BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3070863.2.1
(992 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN130447.1|CN130447 RHOH1_41_C02.g1_A002 Acid- and alkal... 1265 0.0
gb|CN130493.1|CN130493 RHOH1_41_H01.g1_A002 Acid- and alkal... 1185 0.0
gb|CX611646.1|CX611646 ANR1_25_H03.g1_A002 Anaerobic roots ... 1148 0.0
gb|CX611560.1|CX611560 ANR1_25_H03.b1_A002 Anaerobic roots ... 1041 0.0
gb|CX610036.1|CX610036 ANR1_16_F06.b1_A002 Anaerobic roots ... 1031 0.0
gb|AW677920.1|AW677920 WS1_12_B12.b1_A002 Water-stressed 1 ... 963 0.0
gb|CX608625.1|CX608625 ANR1_39_F03.g1_A002 Anaerobic roots ... 952 0.0
gb|CN130373.1|CN130373 RHOH1_41_C02.b1_A002 Acid- and alkal... 783 0.0
gb|CN130419.1|CN130419 RHOH1_41_H01.b1_A002 Acid- and alkal... 767 0.0
gb|CD427331.1|CD427331 SA1_18_B04.g1_A002 Salicylic acid-tr... 733 0.0
gb|CD427207.1|CD427207 SA1_18_B04.b1_A002 Salicylic acid-tr... 716 0.0
gb|CX610123.1|CX610123 ANR1_16_F06.g1_A002 Anaerobic roots ... 700 0.0
gb|CX608546.1|CX608546 ANR1_39_F03.b1_A002 Anaerobic roots ... 311 7e-083
gb|CW384631.1|CW384631 fsbb001f067l22k0 Sorghum methylation... 252 5e-065
gb|CW100832.1|CW100832 104_468_11004316_148_34395_010 Sorgh... 244 1e-062
gb|CW384630.1|CW384630 fsbb001f067l22f0 Sorghum methylation... 228 8e-058
gb|BF657212.1|BF657212 OV2_22_A08.b1_A002 Ovary 2 (OV2) Sor... 228 8e-058
gb|CW484769.1|CW484769 fsbb001f247c04k0 Sorghum methylation... 206 3e-051
gb|AI724495.1|AI724495 RHIZ1_10_G08.y1_A001 Rhizome1 (RHIZ1... 204 1e-050
gb|CL148362.1|CL148362 104_328_10593040_116_31783_164 Sorgh... 186 3e-045
gb|CW484768.1|CW484768 fsbb001f247c04f0 Sorghum methylation... 178 6e-043
gb|CW107005.1|CW107005 104_477_11096309_148_34470_031 Sorgh... 176 3e-042
gb|CW313462.1|CW313462 104_803_11471298_148_35789_067 Sorgh... 176 3e-042
gb|BF656871.1|BF656871 OV2_22_A08.g1_A002 Ovary 2 (OV2) Sor... 172 4e-041
gb|CL172602.1|CL172602 104_375_10890274_116_31797_178 Sorgh... 168 6e-040
gb|CW177379.1|CW177379 104_590_11158993_116_36590_003 Sorgh... 167 2e-039
gb|CW269701.1|CW269701 104_740_11401957_116_36229_049 Sorgh... 105 8e-021
gb|CW269700.1|CW269700 104_740_11401957_116_35320_049 Sorgh... 90 5e-016
gb|CW477810.1|CW477810 fsbb001f235f10f0 Sorghum methylation... 62 1e-007
gb|CW076887.1|CW076887 104_375_10890274_148_31796_178 Sorgh... 46 0.006
gb|BZ349348.1|BZ349348 hq90e05.g1 WGS-SbicolorF (JM107 adap... 42 0.096
gb|CL166959.1|CL166959 104_363_10809742_114_31800_190 Sorgh... 42 0.096
gb|CW072269.1|CW072269 104_325_10592171_116_30539 Sorghum m... 42 0.096
gb|CW283938.1|CW283938 104_760_11409508_116_35482_006 Sorgh... 42 0.096
gb|CW283939.1|CW283939 104_760_11409508_148_35486_006 Sorgh... 42 0.096
gb|CW498374.1|CW498374 fsbb001f291j05k0 Sorghum methylation... 42 0.096
gb|BZ342488.1|BZ342488 ic83h06.b1 WGS-SbicolorF (JM107 adap... 40 0.38
gb|CW513474.1|CW513474 115_4_10511640_1_30021 Sorghum unfil... 40 0.38
gb|CW030899.1|CW030899 104_259_10500489_114_30397 Sorghum m... 40 0.38
gb|CW030900.1|CW030900 104_259_10500489_116_30398 Sorghum m... 40 0.38
gb|CW033844.1|CW033844 104_263_10502188_114_30359 Sorghum m... 40 0.38
gb|CW228650.1|CW228650 104_668_11206494_148_37253_021 Sorgh... 40 0.38
gb|CW289716.1|CW289716 104_768_11412628_148_35550_004 Sorgh... 40 0.38
gb|CW299302.1|CW299302 104_782_11463040_148_36236_060 Sorgh... 40 0.38
gb|CX620595.1|CX620595 GABR1_52_G03.g1_A002 GA- or brassino... 40 0.38
>gb|CN130447.1|CN130447 RHOH1_41_C02.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_41_C02_A002 5', mRNA sequence
Length = 877
Score = 1265 bits (638), Expect = 0.0
Identities = 755/794 (95%)
Strand = Plus / Plus
Query: 36 aaggtcggcctgcgcggcgatggatgtcaagtgccggcgtctggaggggaaggtggccat 95
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 58 aaggccggccagcgcggcgatggatgtcaagtgccggcgtctggaggggaaggtggccgt 117
Query: 96 cgtgacggcgtccacgatggggatcggcctcgccatcgccgagcgcctcggtctggaggg 155
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 118 cgtgacggcgtccacgcaggggatcggcctcgccatcgccgagcgcctcggcctggaggg 177
Query: 156 cgccgccgtcgtcatctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggct 215
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 178 cgccgccgtcgtcatctcctcccgcaagcagaagaacgtggacgaggcggtggaggggct 237
Query: 216 cagggccaagggtatcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcg 275
|||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 238 cagggccaagggtatcaccgcggtgggctccgtctgccacgtctccgacgcgcagcagcg 297
Query: 276 caagagcctcatcgagacggccgtcaagagctttgggcacatagatattcttgtctccaa 335
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 298 caagagtctcatcgagacggccgtcaagagctttgggcacattgacattcttgtctccaa 357
Query: 336 tgctgccgcaaatccttctgtagatagcatacttgaaatgaaagagtctgttctcgataa 395
||||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 358 cgctgctgcaaatcctactgtagatggcatacttgaaatgaaagaggctgttctcgataa 417
Query: 396 gctgtgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcacct 455
||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 418 gctgtgggatattaatgtcaaggcttctatccttcttcttcaggatgctgctccccacct 477
Query: 456 acggaaggggtcatctgtgattattatttcttcaattgctggttacaatccagaacaagg 515
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 478 acggaaggggtcatctgtgattatcatttcttcaattgctggttacaatccagaacaagg 537
Query: 516 attgacaatgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctgg 575
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 538 attgacaatgtatggtgtcacaaagactgctctctttggtctcacaaaggctcttgctgg 597
Query: 576 tgagatgggacccgatactcgtgttaactgtatagcccctggttttgttcctacacggtt 635
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tgagatgggacccaatactcgtgttaactgtatagcccctggttttgttcctacacggtt 657
Query: 636 tgctagtttcctcacagaaaatgagaccattaggaaagagcttaacgagaggaccaagct 695
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 658 tgctagtttcctcacagaaaatgagagcattaggaaagagcttaacgagaggagcaagct 717
Query: 696 taagagattgggtactgtggaagacatggctgcggctgcggcttttctggcgtctgacga 755
|||||||||||||||||||| ||||||||||||||||| || || ||||| ||||||||
Sbjct: 718 caagagattgggtactgtggaggacatggctgcggctgccgcattcctggcatctgacga 777
Query: 756 cgcatcatacattacggctgaaaccattgttgttgctggaggggtgcagtctaggctgta 815
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 778 tgcatcatacattacggctgaaacaattgttgttgctggagggacacagtctaggctgta 837
Query: 816 aatctggctgaagt 829
||||||| ||||||
Sbjct: 838 aatctggttgaagt 851
>gb|CN130493.1|CN130493 RHOH1_41_H01.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_41_H01_A002 5', mRNA sequence
Length = 789
Score = 1185 bits (598), Expect = 0.0
Identities = 700/734 (95%)
Strand = Plus / Plus
Query: 36 aaggtcggcctgcgcggcgatggatgtcaagtgccggcgtctggaggggaaggtggccat 95
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 56 aaggccggccagcgcggcgatggatgtcaagtgccggcgtctggaggggaaggtggccgt 115
Query: 96 cgtgacggcgtccacgatggggatcggcctcgccatcgccgagcgcctcggtctggaggg 155
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 116 cgtgacggcgtccacgcaggggatcggcctcgccatcgccgagcgcctcggcctggaggg 175
Query: 156 cgccgccgtcgtcatctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggct 215
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 176 cgccgccgtcgtcatctcctcccgcaagcagaagaacgtggacgaggcggtggaggggct 235
Query: 216 cagggccaagggtatcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcg 275
|||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 236 cagggccaagggtatcaccgcggtgggctccgtctgccacgtctccgacgcgcagcagcg 295
Query: 276 caagagcctcatcgagacggccgtcaagagctttgggcacatagatattcttgtctccaa 335
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 296 caagagtctcatcgagacggccgtcaagagctttgggcacattgacattcttgtctccaa 355
Query: 336 tgctgccgcaaatccttctgtagatagcatacttgaaatgaaagagtctgttctcgataa 395
||||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 356 cgctgctgcaaatcctactgtagatggcatacttgaaatgaaagaggctgttctcgataa 415
Query: 396 gctgtgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcacct 455
||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 416 gctgtgggatattaatgtcaaggcttctatccttcttcttcaggatgctgctccccacct 475
Query: 456 acggaaggggtcatctgtgattattatttcttcaattgctggttacaatccagaacaagg 515
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 476 acggaaggggtcatctgtgattatcatttcttcaattgctggttacaatccagaacaagg 535
Query: 516 attgacaatgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctgg 575
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 536 attgacaatgtatggtgtcacaaagactgctctctttggtctcacaaaggctcttgctgg 595
Query: 576 tgagatgggacccgatactcgtgttaactgtatagcccctggttttgttcctacacggtt 635
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tgagatgggacccaatactcgtgttaactgtatagcccctggttttgttcctacacggtt 655
Query: 636 tgctagtttcctcacagaaaatgagaccattaggaaagagcttaacgagaggaccaagct 695
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 656 tgctagtttcctcacagaaaatgagagcattaggaaagagcttaacgagaggagcaagct 715
Query: 696 taagagattgggtactgtggaagacatggctgcggctgcggcttttctggcgtctgacga 755
|||||||||||||||||||| ||||||||||||||||| || || ||||| ||||||||
Sbjct: 716 caagagattgggtactgtggaggacatggctgcggctgccgcattcctggcatctgacga 775
Query: 756 cgcatcatacatta 769
|||||||||||||
Sbjct: 776 tgcatcatacatta 789
>gb|CX611646.1|CX611646 ANR1_25_H03.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_25_H03_A002 5', mRNA sequence
Length = 756
Score = 1148 bits (579), Expect = 0.0
Identities = 669/699 (95%)
Strand = Plus / Plus
Query: 36 aaggtcggcctgcgcggcgatggatgtcaagtgccggcgtctggaggggaaggtggccat 95
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 54 aaggccggccagcgcggcgatggatgtcaagtgccggcgtctggaggggaaggtggccgt 113
Query: 96 cgtgacggcgtccacgatggggatcggcctcgccatcgccgagcgcctcggtctggaggg 155
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 114 cgtgacggcgtccacgcaggggatcggcctcgccatcgccgagcgcctcggcctggaggg 173
Query: 156 cgccgccgtcgtcatctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggct 215
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 174 cgccgccgtcgtcatctcctcccgcaagcagaagaacgtggacgaggcggtggaggggct 233
Query: 216 cagggccaagggtatcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcg 275
|||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 234 cagggccaagggtatcaccgcggtgggctccgtctgccacgtctccgacgcgcagcagcg 293
Query: 276 caagagcctcatcgagacggccgtcaagagctttgggcacatagatattcttgtctccaa 335
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 294 caagagtctcatcgagacggccgtcaagagctttgggcacattgacattcttgtctccaa 353
Query: 336 tgctgccgcaaatccttctgtagatagcatacttgaaatgaaagagtctgttctcgataa 395
||||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 354 cgctgctgcaaatcctactgtagatggcatacttgaaatgaaagaggctgttctcgataa 413
Query: 396 gctgtgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcacct 455
||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 414 gctgtgggatattaatgtcaaggcttctatccttcttcttcaggatgctgctccccacct 473
Query: 456 acggaaggggtcatctgtgattattatttcttcaattgctggttacaatccagaacaagg 515
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 474 acggaaggggtcatctgtgattatcatttcttcaattgctggttacaatccagaacaagg 533
Query: 516 attgacaatgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctgg 575
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 534 attgacaatgtatggtgtcacaaagactgctctctttggtctcacaaaggctcttgctgg 593
Query: 576 tgagatgggacccgatactcgtgttaactgtatagcccctggttttgttcctacacggtt 635
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tgagatgggacccaatactcgtgttaactgtatagcccctggttttgttcctacacggtt 653
Query: 636 tgctagtttcctcacagaaaatgagaccattaggaaagagcttaacgagaggaccaagct 695
||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct: 654 tgctagtttcctcacagaatatgagagcattaggaaagagcttaacgagaggagcaagct 713
Query: 696 taagagattgggtactgtggaagacatggctgcggctgc 734
|||||||||||||||||||| |||||||||||||||||
Sbjct: 714 caagagattgggtactgtggaggacatggctgcggctgc 752
>gb|CX611560.1|CX611560 ANR1_25_H03.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_25_H03_A002 3', mRNA sequence
Length = 769
Score = 1041 bits (525), Expect = 0.0
Identities = 624/657 (94%)
Strand = Plus / Plus
Query: 173 cctcccgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggtatca 232
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctcccgcaagcagaagaacgtggacgaggcggtggaggggctcagggccaagggtatca 60
Query: 233 ccgcggttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcgaga 292
||||||| || |||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 61 ccgcggtgggctccgtctgccacgtctccgacgcgcagcagcgcaagagtctcatcgaga 120
Query: 293 cggccgtcaagagctttgggcacatagatattcttgtctccaatgctgccgcaaatcctt 352
||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||
Sbjct: 121 cggccgtcaagagctttgggcacattgacattcttgtctccaacgctgctgcaaatccta 180
Query: 353 ctgtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgggatattaacg 412
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 181 ctgtagatggcatacttgaaatgaaagaggctgttctcgataagctgtgggatattaatg 240
Query: 413 tcaaggcttctatccttcttattcaggatgctgctcctcacctacggaaggggtcatctg 472
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 241 tcaaggcttctatccttcttcttcaggatgctgctccccacctacggaaggggtcatctg 300
Query: 473 tgattattatttcttcaattgctggttacaatccagaacaaggattgacaatgtatggtg 532
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgattatcatttcttcaattgctggttacaatccagaacaaggattgacaatgtatggtg 360
Query: 533 tcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatgggacccgata 592
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 361 tcacaaagactgctctctttggtctcacaaaggctcttgctggtgagatgggacccaata 420
Query: 593 ctcgtgttaactgtatagcccctggttttgttcctacacggtttgctagtttcctcacag 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctcgtgttaactgtatagcccctggttttgttcctacacggtttgctagtttcctcacag 480
Query: 653 aaaatgagaccattaggaaagagcttaacgagaggaccaagcttaagagattgggtactg 712
||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 481 aaaatgagagcattaggaaagagcttaacgagaggagcaagctcaagagattgggtactg 540
Query: 713 tggaagacatggctgcggctgcggcttttctggcgtctgacgacgcatcatacattacgg 772
|||| ||||||||||||||||| || || ||||| |||||||| ||||||||||||||||
Sbjct: 541 tggaggacatggctgcggctgccgcattcctggcatctgacgatgcatcatacattacgg 600
Query: 773 ctgaaaccattgttgttgctggaggggtgcagtctaggctgtaaatctggctgaagt 829
||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 601 ctgaaacaattgttgttgctggagggacacagtctaggctgtaaatctggttgaagt 657
>gb|CX610036.1|CX610036 ANR1_16_F06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_16_F06_A002 3', mRNA sequence
Length = 835
Score = 1031 bits (520), Expect = 0.0
Identities = 619/652 (94%)
Strand = Plus / Plus
Query: 178 cgcaagcagaagaacgtgaacgaggcggtggaggggctcagggccaagggtatcaccgcg 237
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgcaagcagaagaacgtggacgaggcggtggaggggctcagggccaagggtatcaccgcg 60
Query: 238 gttggtgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcgagacggcc 297
|| || |||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 61 gtgggctccgtctgccacgtctccgacgcgcagcagcgcaagagtctcatcgagacggcc 120
Query: 298 gtcaagagctttgggcacatagatattcttgtctccaatgctgccgcaaatccttctgta 357
|||||||||||||||||||| || |||||||||||||| ||||| ||||||||| |||||
Sbjct: 121 gtcaagagctttgggcacattgacattcttgtctccaacgctgctgcaaatcctactgta 180
Query: 358 gatagcatacttgaaatgaaagagtctgttctcgataagctgtgggatattaacgtcaag 417
||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 181 gatggcatacttgaaatgaaagaggctgttctcgataagctgtgggatattaatgtcaag 240
Query: 418 gcttctatccttcttattcaggatgctgctcctcacctacggaaggggtcatctgtgatt 477
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 241 gcttctatccttcttcttcaggatgctgctccccacctacggaaggggtcatctgtgatt 300
Query: 478 attatttcttcaattgctggttacaatccagaacaaggattgacaatgtatggtgtcaca 537
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atcatttcttcaattgctggttacaatccagaacaaggattgacaatgtatggtgtcaca 360
Query: 538 aagactgctctctttggtctcacgaaggctcttgctggtgagatgggacccgatactcgt 597
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 361 aagactgctctctttggtctcacaaaggctcttgctggtgagatgggacccaatactcgt 420
Query: 598 gttaactgtatagcccctggttttgttcctacacggtttgctagtttcctcacagaaaat 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gttaactgtatagcccctggttttgttcctacacggtttgctagtttcctcacagaaaat 480
Query: 658 gagaccattaggaaagagcttaacgagaggaccaagcttaagagattgggtactgtggaa 717
|||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 481 gagagcattaggaaagagcttaacgagaggagcaagctcaagagattgggtactgtggag 540
Query: 718 gacatggctgcggctgcggcttttctggcgtctgacgacgcatcatacattacggctgaa 777
||||||||||||||||| || || ||||| |||||||| |||||||||||||||||||||
Sbjct: 541 gacatggctgcggctgccgcattcctggcatctgacgatgcatcatacattacggctgaa 600
Query: 778 accattgttgttgctggaggggtgcagtctaggctgtaaatctggctgaagt 829
|| |||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 601 acaattgttgttgctggagggacacagtctaggctgtaaatctggttgaagt 652
>gb|AW677920.1|AW677920 WS1_12_B12.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 582
Score = 963 bits (486), Expect = 0.0
Identities = 558/582 (95%)
Strand = Plus / Plus
Query: 124 ctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtcatctcctcccgcaag 183
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcgccatcgccgagcgcctcggcctggagggcgccgccgtcgtcatctcctcccgcaag 60
Query: 184 cagaagaacgtgaacgaggcggtggaggggctcagggccaagggtatcaccgcggttggt 243
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 61 cagaagaacgtggacgaggcggtggaggggctcagggccaagggtatcaccgcggtgggc 120
Query: 244 gccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcgagacggccgtcaag 303
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 121 tccgtctgccacgtctccgacgcgcagcagcgcaagagtctcatcgagacggccgtcaag 180
Query: 304 agctttgggcacatagatattcttgtctccaatgctgccgcaaatccttctgtagatagc 363
|||||||||||||| || |||||||||||||| ||||| ||||||||| |||||||| ||
Sbjct: 181 agctttgggcacattgacattcttgtctccaacgctgctgcaaatcctactgtagatggc 240
Query: 364 atacttgaaatgaaagagtctgttctcgataagctgtgggatattaacgtcaaggcttct 423
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 241 atacttgaaatgaaagaggctgttctcgataagctgtgggatattaatgtcaaggcttct 300
Query: 424 atccttcttattcaggatgctgctcctcacctacggaaggggtcatctgtgattattatt 483
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 301 atccttcttcttcaggatgctgctccccacctacggaaggggtcatctgtgattatcatt 360
Query: 484 tcttcaattgctggttacaatccagaacaaggattgacaatgtatggtgtcacaaagact 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcttcaattgctggttacaatccagaacaaggattgacaatgtatggtgtcacaaagact 420
Query: 544 gctctctttggtctcacgaaggctcttgctggtgagatgggacccgatactcgtgttaac 603
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 421 gctctctttggtctcacaaaggctcttgctggtgagatgggacccaatactcgtgttaac 480
Query: 604 tgtatagcccctggttttgttcctacacggtttgctagtttcctcacagaaaatgagacc 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 481 tgtatagcccctggttttgttcctacacggtttgctagtttcctcacagaaaatgagagc 540
Query: 664 attaggaaagagcttaacgagaggaccaagcttaagagattg 705
|||| |||||||||||||||||||| |||||| |||||||||
Sbjct: 541 attatgaaagagcttaacgagaggagcaagctcaagagattg 582
>gb|CX608625.1|CX608625 ANR1_39_F03.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_39_F03_A002 5', mRNA sequence
Length = 641
Score = 952 bits (480), Expect = 0.0
Identities = 561/588 (95%)
Strand = Plus / Plus
Query: 36 aaggtcggcctgcgcggcgatggatgtcaagtgccggcgtctggaggggaaggtggccat 95
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 54 aaggccggccagcgcggcgatggatgtcaagtgccggcgtctggaggggaaggtggccgt 113
Query: 96 cgtgacggcgtccacgatggggatcggcctcgccatcgccgagcgcctcggtctggaggg 155
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 114 cgtgacggcgtccacgcaggggatcggcctcgccatcgccgagcgcctcggcctggaggg 173
Query: 156 cgccgccgtcgtcatctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggct 215
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 174 cgccgccgtcgtcatctcctcccgcaagcagaagaacgtggacgaggcggtggaggggct 233
Query: 216 cagggccaagggtatcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcg 275
|||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 234 cagggccaagggtatcaccgcggtgggctccgtctgccacgtctccgacgcgcagcagcg 293
Query: 276 caagagcctcatcgagacggccgtcaagagctttgggcacatagatattcttgtctccaa 335
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 294 caagagtctcatcgagacggccgtcaagagctttgggcacattgacattcttgtctccaa 353
Query: 336 tgctgccgcaaatccttctgtagatagcatacttgaaatgaaagagtctgttctcgataa 395
||||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 354 cgctgctgcaaatcctactgtagatggcatacttgaaatgaaagaggctgttctcgataa 413
Query: 396 gctgtgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcacct 455
||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 414 gctgtgggatattaatgtcaaggcttctatccttcttcttcaggatgctgctccccacct 473
Query: 456 acggaaggggtcatctgtgattattatttcttcaattgctggttacaatccagaacaagg 515
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 474 acggaaggggtcatctgtgattatcatttcttcaattgctggttacagtccagaacaagg 533
Query: 516 attgacaatgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctgg 575
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 534 attgacaatgtatggtgtcacaaagactgctctctttggtctcacaaaggctcttgctgg 593
Query: 576 tgagatgggacccgatactcgtgttaactgtatagcccctggttttgt 623
||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 594 tgagatgggacccaatactcctgttaactgtatagcccctggttttgt 641
>gb|CN130373.1|CN130373 RHOH1_41_C02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_41_C02_A002 3', mRNA sequence
Length = 769
Score = 783 bits (395), Expect = 0.0
Identities = 464/487 (95%)
Strand = Plus / Plus
Query: 343 gcaaatccttctgtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgg 402
||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 gcaaatcctactgtagatggcatacttgaaatgaaagaggctgttctcgataagctgtgg 60
Query: 403 gatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcacctacggaag 462
|||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 61 gatattaatgtcaaggcttctatccttcttcttcaggatgctgctccccacctacggaag 120
Query: 463 gggtcatctgtgattattatttcttcaattgctggttacaatccagaacaaggattgaca 522
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gggtcatctgtgattatcatttcttcaattgctggttacaatccagaacaaggattgaca 180
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 181 atgtatggtgtcacaaagactgctctctttggtctcacaaaggctcttgctggtgagatg 240
Query: 583 ggacccgatactcgtgttaactgtatagcccctggttttgttcctacacggtttgctagt 642
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggacccaatactcgtgttaactgtatagcccctggttttgttcctacacggtttgctagt 300
Query: 643 ttcctcacagaaaatgagaccattaggaaagagcttaacgagaggaccaagcttaagaga 702
||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||
Sbjct: 301 ttcctcacagaaaatgagagcattaggaaagagcttaacgagaggagcaagctcaagaga 360
Query: 703 ttgggtactgtggaagacatggctgcggctgcggcttttctggcgtctgacgacgcatca 762
|||||||||||||| ||||||||||||||||| || || ||||| |||||||| ||||||
Sbjct: 361 ttgggtactgtggaggacatggctgcggctgccgcattcctggcatctgacgatgcatca 420
Query: 763 tacattacggctgaaaccattgttgttgctggaggggtgcagtctaggctgtaaatctgg 822
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 421 tacattacggctgaaacaattgttgttgctggagggacacagtctaggctgtaaatctgg 480
Query: 823 ctgaagt 829
||||||
Sbjct: 481 ttgaagt 487
>gb|CN130419.1|CN130419 RHOH1_41_H01.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_41_H01_A002 3', mRNA sequence
Length = 626
Score = 767 bits (387), Expect = 0.0
Identities = 462/487 (94%)
Strand = Plus / Plus
Query: 343 gcaaatccttctgtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgg 402
||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4 gcaaatcctactgtagatggcatacttgaaatgaaagaggctgttctcgataagctgtgg 63
Query: 403 gatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcacctacggaag 462
|||||||| |||||||||||||||||| || |||||||||||||||| ||||||||||||
Sbjct: 64 gatattaatgtcaaggcttctatcctttttcttcaggatgctgctccccacctacggaag 123
Query: 463 gggtcatctgtgattattatttcttcaattgctggttacaatccagaacaaggattgaca 522
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gggtcatctgtgattatcatttcttcaattgctggttacaatccagaacaaggattgaca 183
Query: 523 atgtatggtgtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatg 582
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 184 atgtatggtgtcacaaagactgctctctttggtctcacaaaggctcttgctggtgagatg 243
Query: 583 ggacccgatactcgtgttaactgtatagcccctggttttgttcctacacggtttgctagt 642
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggacccaatactcgtgttaactgtatagcccctggttttgttcctacacggtttgctagt 303
Query: 643 ttcctcacagaaaatgagaccattaggaaagagcttaacgagaggaccaagcttaagaga 702
||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||
Sbjct: 304 ttcctcacagaaaatgagagcattaggaaagagcttaacgagaggagcaagctcaagaga 363
Query: 703 ttgggtactgtggaagacatggctgcggctgcggcttttctggcgtctgacgacgcatca 762
|||||||||||||| ||||||||||||||||| || || ||||| |||||||| ||||||
Sbjct: 364 ttgggtactgtggaggacatggctgcggctgccgcattcctggcatctgacgatgcatca 423
Query: 763 tacattacggctgaaaccattgttgttgctggaggggtgcagtctaggctgtaaatctgg 822
||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||
Sbjct: 424 tacattacggctgaaacaattgttgttgctggagggacacagtttaggctgtaaatctgg 483
Query: 823 ctgaagt 829
||||||
Sbjct: 484 ttgaagt 490
>gb|CD427331.1|CD427331 SA1_18_B04.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_18_B04_A002 5', mRNA sequence
Length = 612
Score = 733 bits (370), Expect = 0.0
Identities = 436/458 (95%)
Strand = Plus / Plus
Query: 372 aatgaaagagtctgttctcgataagctgtgggatattaacgtcaaggcttctatccttct 431
|||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 5 aatgaaagaggctgttctcgataagctgtgggatattaatgtcaaggctcctatccttct 64
Query: 432 tattcaggatgctgctcctcacctacggaaggggtcatctgtgattattatttcttcaat 491
| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 65 tcttcaggatgctgctccccacctacggaaggggtcatctgtgattatcatttcttcaat 124
Query: 492 tgctggttacaatccagaacaaggattgacaatgtatggtgtcacaaagactgctctctt 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tgctggttacaatccagaacaaggattgacaatgtatggtgtcacaaagactgctctctt 184
Query: 552 tggtctcacgaaggctcttgctggtgagatgggacccgatactcgtgttaactgtatagc 611
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 185 tggtctcacaaaggctcttgctggtgagatgggacccaatactcgtgttaactgtatagc 244
Query: 612 ccctggttttgttcctacacggtttgctagtttcctcacagaaaatgagaccattaggaa 671
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 245 ccctggttttgttcctacacggtttgctagtttcctcacagaaaatgagagcattaggaa 304
Query: 672 agagcttaacgagaggaccaagcttaagagattgggtactgtggaagacatggctgcggc 731
||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 305 agagcttaacgagaggagcaagctcaagagattgggtactgtggaggacatggctgcggc 364
Query: 732 tgcggcttttctggcgtctgacgacgcatcatacattacggctgaaaccattgttgttgc 791
||| || || ||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 365 tgccgcattcctggcatctgacgatgcatcatacattacggctgaaacaattgttgttgc 424
Query: 792 tggaggggtgcagtctaggctgtaaatctggctgaagt 829
||||||| ||||||||||||||||||||| ||||||
Sbjct: 425 tggagggacacagtctaggctgtaaatctggttgaagt 462
>gb|CD427207.1|CD427207 SA1_18_B04.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_18_B04_A002 3', mRNA sequence
Length = 585
Score = 716 bits (361), Expect = 0.0
Identities = 441/465 (94%), Gaps = 2/465 (0%)
Strand = Plus / Plus
Query: 367 cttgaaatgaaagagtctgttctcgataagctgtgggatattaacgtcaaggcttctatc 426
||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 1 cttgaaatgaaagaggctgttctcgataagctgtgggatattaatgtcaaggctcctatc 60
Query: 427 cttcttattcaggatgctgctcctcacctacggaaggggtcatctgtgattattatttct 486
|||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 61 cttcttcttcaggatgctgctccccacctacggaaggggtcatctgtgattatcatttct 120
Query: 487 tcaattgctggttacaatccagaacaaggattgacaatgtatggtgtcacaaagactgct 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaattgctggttacaatccagaacaaggattgacaatgtatggtgtcacaaagactgct 180
Query: 547 ctctttggtctcacgaaggctcttgctggtgagatgggacccgatactcgtgttaactgt 606
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 181 ctctttggtctcacaaaggctcttgctggtgagatgggacccaatactcgtgttaactgt 240
Query: 607 atag-cccctggttttgttcctaca-cggtttgctagtttcctcacagaaaatgagacca 664
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 241 atagccccctggttttgttcctacaccggtttgctagtttcctcacagaaaatgagagca 300
Query: 665 ttaggaaagagcttaacgagaggaccaagcttaagagattgggtactgtggaagacatgg 724
|||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||
Sbjct: 301 ttaggaaagagcttaacgagaggagcaagctcaagagattgggtactgtggaggacatgg 360
Query: 725 ctgcggctgcggcttttctggcgtctgacgacgcatcatacattacggctgaaaccattg 784
|||||||||| || || ||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct: 361 ctgcggctgccgcattcctggcatctgacgatgcatcatacattacggctgaaacaattg 420
Query: 785 ttgttgctggaggggtgcagtctaggctgtaaatctggctgaagt 829
|||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 421 ttgttgctggagggacacagtctaggctgtaaatctggttgaagt 465
>gb|CX610123.1|CX610123 ANR1_16_F06.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_16_F06_A002 5', mRNA sequence
Length = 507
Score = 700 bits (353), Expect = 0.0
Identities = 428/453 (94%)
Strand = Plus / Plus
Query: 36 aaggtcggcctgcgcggcgatggatgtcaagtgccggcgtctggaggggaaggtggccat 95
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 55 aaggccggccagcgcggcgatggatgtcaagtgccggcgtctggaggggaaggtggccgt 114
Query: 96 cgtgacggcgtccacgatggggatcggcctcgccatcgccgagcgcctcggtctggaggg 155
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 115 cgtgacggcgtccacgcaggggatcggcctcgccatcgccgagcgcctcggcctggaggg 174
Query: 156 cgccgccgtcgtcatctcctcccgcaagcagaagaacgtgaacgaggcggtggaggggct 215
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 175 cgccgccgtcgtcatctcctcccgcaagcagaagaacgtggacgaggcggtggaggggct 234
Query: 216 cagggccaagggtatcaccgcggttggtgccgtctgccacgtctccgacgcacagcagcg 275
|||||||||||||||||||||||| || || ||||||||||||||||||| ||||| ||
Sbjct: 235 cagggccaagggtatcaccgcggtgggctccatctgccacgtctccgacgcgcagcaccg 294
Query: 276 caagagcctcatcgagacggccgtcaagagctttgggcacatagatattcttgtctccaa 335
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 295 caagagtctcatcgagacggccgtcaagagctttgggcacattgacattcttgtctccaa 354
Query: 336 tgctgccgcaaatccttctgtagatagcatacttgaaatgaaagagtctgttctcgataa 395
||||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 355 cgctgctgcaaatcctactgtagatggcatacttgaaatgaaagaggctgttctcgataa 414
Query: 396 gctgtgggatattaacgtcaaggcttctatccttcttattcaggatgctgctcctcacct 455
||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 415 gctgtgggatattaatgtcaaggcttctatccttcttcttcaggatgctgctccccacct 474
Query: 456 acggaaggggtcatctgtgattattatttcttc 488
|||||||||||||||||||||||| ||||||||
Sbjct: 475 acggaaggggtcatctgtgattatcatttcttc 507
>gb|CX608546.1|CX608546 ANR1_39_F03.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_39_F03_A002 3', mRNA sequence
Length = 357
Score = 311 bits (157), Expect = 7e-083
Identities = 229/253 (90%)
Strand = Plus / Plus
Query: 577 gagatgggacccgatactcgtgttaactgtatagcccctggttttgttcctacacggttt 636
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 gagatgggacccaatactcgtgttaactgtataccccctggttttgttcctacacggttt 60
Query: 637 gctagtttcctcacagaaaatgagaccattaggaaagagcttaacgagaggaccaagctt 696
|||||||||||| |||||||||||| |||||||||||||||||||||| || ||||||
Sbjct: 61 gctagtttcctcccagaaaatgagagcattaggaaagagcttaacgaggggggcaagctc 120
Query: 697 aagagattgggtactgtggaagacatggctgcggctgcggcttttctggcgtctgacgac 756
|||||||||||||||||||| ||||||||||||||||| | || ||||| | ||| ||
Sbjct: 121 aagagattgggtactgtggaggacatggctgcggctgccccattcctggcttttgaggat 180
Query: 757 gcatcatacattacggctgaaaccattgttgttgctggaggggtgcagtctaggctgtaa 816
||||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||||
Sbjct: 181 gcatcatacattacggctgaaacaattgttgttgctggggggacccagtttaggctgtaa 240
Query: 817 atctggctgaagt 829
|||||| ||||||
Sbjct: 241 atctggttgaagt 253
>gb|CW384631.1|CW384631 fsbb001f067l22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f067l22, DNA
sequence
Length = 688
Score = 252 bits (127), Expect = 5e-065
Identities = 145/151 (96%)
Strand = Plus / Plus
Query: 36 aaggtcggcctgcgcggcgatggatgtcaagtgccggcgtctggaggggaaggtggccat 95
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 aaggccggccagcgcggcgatggatgtcaagtgccggcgtctggaggggaaggtggccgt 260
Query: 96 cgtgacggcgtccacgatggggatcggcctcgccatcgccgagcgcctcggtctggaggg 155
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 cgtgacggcgtccacgcaggggatcggcctcgccatcgccgagcgcctcggcctggaggg 320
Query: 156 cgccgccgtcgtcatctcctcccgcaagcag 186
|||||||||||||||||||||||||||||||
Sbjct: 321 cgccgccgtcgtcatctcctcccgcaagcag 351
Score = 192 bits (97), Expect = 4e-047
Identities = 115/121 (95%)
Strand = Plus / Plus
Query: 183 gcagaagaacgtgaacgaggcggtggaggggctcagggccaagggtatcaccgcggttgg 242
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 484 gcagaagaacgtggacgaggcggtggaggggctcagggccaagggtatcaccgcggtggg 543
Query: 243 tgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcgagacggccgtcaa 302
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 544 ctccgtctgccacgtctccgacgcgcagcagcgcaagagtctcatcgagacggccgtcaa 603
Query: 303 g 303
|
Sbjct: 604 g 604
>gb|CW100832.1|CW100832 104_468_11004316_148_34395_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004316, DNA
sequence
Length = 494
Score = 244 bits (123), Expect = 1e-062
Identities = 144/151 (95%)
Strand = Plus / Minus
Query: 36 aaggtcggcctgcgcggcgatggatgtcaagtgccggcgtctggaggggaaggtggccat 95
|||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 398 aaggccggccagagcggcgatggatgtcaagtgccggcgtctggaggggaaggtggccgt 339
Query: 96 cgtgacggcgtccacgatggggatcggcctcgccatcgccgagcgcctcggtctggaggg 155
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 338 cgtgacggcgtccacgcaggggatcggcctcgccatcgccgagcgcctcggcctggaggg 279
Query: 156 cgccgccgtcgtcatctcctcccgcaagcag 186
|||||||||||||||||||||||||||||||
Sbjct: 278 cgccgccgtcgtcatctcctcccgcaagcag 248
Score = 151 bits (76), Expect = 1e-034
Identities = 103/112 (91%)
Strand = Plus / Minus
Query: 183 gcagaagaacgtgaacgaggcggtggaggggctcagggccaagggtatcaccgcggttgg 242
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 115 gcagaagaacgtggacgaggcggtggaggggctcagggccaagggtatcaccgcggtggg 56
Query: 243 tgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcgagacg 294
||||||||||||||||| | | |||||||||||||| ||||||||||||
Sbjct: 55 ctccgtctgccacgtctccaaagggcagcagcgcaagagtctcatcgagacg 4
>gb|CW384630.1|CW384630 fsbb001f067l22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f067l22, DNA
sequence
Length = 742
Score = 228 bits (115), Expect = 8e-058
Identities = 127/131 (96%)
Strand = Plus / Minus
Query: 56 tggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtccacgatgg 115
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 742 tggatgtcaagtgccggcgtctggaggggaaggtggccgtcgtgacggcgtccacgcagg 683
Query: 116 ggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtcatctcct 175
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 682 ggatcggcctcgccatcgccgagcgcctcggcctggagggcgccgccgtcgtcatctcct 623
Query: 176 cccgcaagcag 186
|||||||||||
Sbjct: 622 cccgcaagcag 612
Score = 192 bits (97), Expect = 4e-047
Identities = 115/121 (95%)
Strand = Plus / Minus
Query: 183 gcagaagaacgtgaacgaggcggtggaggggctcagggccaagggtatcaccgcggttgg 242
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 479 gcagaagaacgtggacgaggcggtggaggggctcagggccaagggtatcaccgcggtggg 420
Query: 243 tgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcgagacggccgtcaa 302
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 419 ctccgtctgccacgtctccgacgcgcagcagcgcaagagtctcatcgagacggccgtcaa 360
Query: 303 g 303
|
Sbjct: 359 g 359
>gb|BF657212.1|BF657212 OV2_22_A08.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 138
Score = 228 bits (115), Expect = 8e-058
Identities = 127/131 (96%)
Strand = Plus / Plus
Query: 51 ggcgatggatgtcaagtgccggcgtctggaggggaaggtggccatcgtgacggcgtccac 110
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 8 ggcgatggatgtcaagtgccggcgtctggaggggaaggtggccgtcgtgacggcgtccac 67
Query: 111 gatggggatcggcctcgccatcgccgagcgcctcggtctggagggcgccgccgtcgtcat 170
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 68 gcaggggatcggcctcgccatcgccgagcgcctcggcctggagggcgccgccgtcgtcat 127
Query: 171 ctcctcccgca 181
|||||||||||
Sbjct: 128 ctcctcccgca 138
>gb|CW484769.1|CW484769 fsbb001f247c04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f247c04, DNA
sequence
Length = 699
Score = 206 bits (104), Expect = 3e-051
Identities = 125/132 (94%)
Strand = Plus / Minus
Query: 434 ttcaggatgctgctcctcacctacggaaggggtcatctgtgattattatttcttcaattg 493
||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 549 ttcaggacgccgctccccacctacggaaggggtcatctgtgattcttatttcttcaattg 490
Query: 494 ctggttacaatccagaacaaggattgacaatgtatggtgtcacaaagactgctctctttg 553
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 489 ctggttacaatccagagcaaggattgacaatgtatggtgttacaaagactgctctctttg 430
Query: 554 gtctcacgaagg 565
||||||| ||||
Sbjct: 429 gtctcacaaagg 418
Score = 182 bits (92), Expect = 4e-044
Identities = 101/104 (97%)
Strand = Plus / Minus
Query: 563 aggctcttgctggtgagatgggacccgatactcgtgttaactgtatagcccctggttttg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aggctcttgctggtgagatgggacccgatactcgtgttaactgtatagcccctggttttg 296
Query: 623 ttcctacacggtttgctagtttcctcacagaaaatgagaccatt 666
||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct: 295 ttcctacacggtttgctagtttcttcatagacaatgagaccatt 252
Score = 115 bits (58), Expect = 8e-024
Identities = 73/78 (93%)
Strand = Plus / Minus
Query: 362 gcatacttgaaatgaaagagtctgttctcgataagctgtgggatattaacgtcaaggctt 421
|||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||
Sbjct: 694 gcatacttgaaatgaaagaggctgttcttgataagctgtgggacattaacgtcaaggctt 635
Query: 422 ctatccttcttattcagg 439
|||| |||||| ||||||
Sbjct: 634 ctattcttcttcttcagg 617
>gb|AI724495.1|AI724495 RHIZ1_10_G08.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 414
Score = 204 bits (103), Expect = 1e-050
Identities = 160/179 (89%)
Strand = Plus / Plus
Query: 651 agaaaatgagaccattaggaaagagcttaacgagaggaccaagcttaagagattgggtac 710
||||||||||| | ||||||||||||||| |||||||| |||||| || |||||||||||
Sbjct: 49 agaaaatgagagccttaggaaagagcttatcgagaggagcaagctcaaaagattgggtac 108
Query: 711 tgtggaagacatggctgcggctgcggcttttctggcgtctgacgacgcatcatacattac 770
|||||| ||||||||||||||||| || || ||||| |||||||| ||||||||||||||
Sbjct: 109 tgtggaggacatggctgcggctgccgcattcctggcatctgacgatgcatcatacattac 168
Query: 771 ggctgaaaccattgttgttgctggaggggtgcagtctaggctgtaaatctggctgaagt 829
|||||| | |||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 169 agctgaaccaattgttgttgctggagggccccagtttaggctgtaaatctggctgaagt 227
>gb|CL148362.1|CL148362 104_328_10593040_116_31783_164 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10593040, DNA
sequence
Length = 577
Score = 186 bits (94), Expect = 3e-045
Identities = 109/114 (95%)
Strand = Plus / Minus
Query: 69 ccggcgtctggaggggaaggtggccatcgtgacggcgtccacgatggggatcggcctcgc 128
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 370 ccggcgtctggaggggaaggtggccgtcgtgacggcgtccacgcaggggatcggcctcgc 311
Query: 129 catcgccgagcgcctcggtctggagggcgccgccgtcgtcatctcctcccgcaa 182
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 310 catcgccgaacgcctcggtctcgagggcgccgccgtcgtcatctcctcccgcaa 257
Score = 141 bits (71), Expect = 1e-031
Identities = 98/107 (91%)
Strand = Plus / Minus
Query: 183 gcagaagaacgtgaacgaggcggtggaggggctcagggccaagggtatcaccgcggttgg 242
||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| ||| ||
Sbjct: 107 gcagaagaacgtggacgaggcggtggaggggctcagggctaaggggatcaccgtggtggg 48
Query: 243 tgccgtctgccacgtctccgacgcacagcagcgcaagagcctcatcg 289
|||||||||||||| ||||| |||||||||||||||| ||||||||
Sbjct: 47 cgccgtctgccacgtgtccgatgcacagcagcgcaagaacctcatcg 1
>gb|CW484768.1|CW484768 fsbb001f247c04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f247c04, DNA
sequence
Length = 564
Score = 178 bits (90), Expect = 6e-043
Identities = 123/134 (91%)
Strand = Plus / Plus
Query: 306 ctttgggcacatagatattcttgtctccaatgctgccgcaaatccttctgtagatagcat 365
|||||||||||| ||||||||||||||||||||||| ||||||||| ||||| | ||||
Sbjct: 355 ctttgggcacattgatattcttgtctccaatgctgctgcaaatcctactgtaaagggcat 414
Query: 366 acttgaaatgaaagagtctgttctcgataagctgtgggatattaacgtcaaggcttctat 425
|||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 415 acttgaaatgaaagaggctgttcttgataagctgtgggacattaacgtcaaggcttctat 474
Query: 426 ccttcttattcagg 439
|||||| ||||||
Sbjct: 475 tcttcttcttcagg 488
>gb|CW107005.1|CW107005 104_477_11096309_148_34470_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096309, DNA
sequence
Length = 584
Score = 176 bits (89), Expect = 3e-042
Identities = 164/189 (86%)
Strand = Plus / Plus
Query: 667 aggaaagagcttaacgagaggaccaagcttaagagattgggtactgtggaagacatggct 726
|||||| ||||||| |||||||| | |||||||||||||||| |||||||||| |||||
Sbjct: 231 aggaaaaagcttaatgagaggactatgcttaagagattgggttctgtggaagatatggcg 290
Query: 727 gcggctgcggcttttctggcgtctgacgacgcatcatacattacggctgaaaccattgtt 786
|||||||| || || ||||| |||||||| ||||||| |||||| ||||||||||||| |
Sbjct: 291 gcggctgctgcattcctggcatctgacgatgcatcattcattacagctgaaaccattgct 350
Query: 787 gttgctggaggggtgcagtctaggctgtaaatctggctgaagtttatatttacttggtta 846
|||||||||||||||| |||||| ||||||| |||||||||| ||| | ||| || ||
Sbjct: 351 gttgctggaggggtgccgtctagattgtaaatttggctgaagtctattctgactcggcta 410
Query: 847 ataatgtgt 855
|||||||||
Sbjct: 411 ataatgtgt 419
>gb|CW313462.1|CW313462 104_803_11471298_148_35789_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471298, DNA
sequence
Length = 614
Score = 176 bits (89), Expect = 3e-042
Identities = 164/189 (86%)
Strand = Plus / Plus
Query: 667 aggaaagagcttaacgagaggaccaagcttaagagattgggtactgtggaagacatggct 726
|||||| ||||||| |||||||| | |||||||||||||||| |||||||||| |||||
Sbjct: 71 aggaaaaagcttaatgagaggactatgcttaagagattgggttctgtggaagatatggcg 130
Query: 727 gcggctgcggcttttctggcgtctgacgacgcatcatacattacggctgaaaccattgtt 786
|||||||| || || ||||| |||||||| ||||||| |||||| ||||||||||||| |
Sbjct: 131 gcggctgctgcattcctggcatctgacgatgcatcattcattacagctgaaaccattgct 190
Query: 787 gttgctggaggggtgcagtctaggctgtaaatctggctgaagtttatatttacttggtta 846
|||||||||||||||| |||||| ||||||| |||||||||| ||| | ||| || ||
Sbjct: 191 gttgctggaggggtgccgtctagattgtaaatttggctgaagtctattctgactcggcta 250
Query: 847 ataatgtgt 855
|||||||||
Sbjct: 251 ataatgtgt 259
>gb|BF656871.1|BF656871 OV2_22_A08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 210
Score = 172 bits (87), Expect = 4e-041
Identities = 126/139 (90%)
Strand = Plus / Plus
Query: 691 aagcttaagagattgggtactgtggaagacatggctgcggctgcggcttttctggcgtct 750
||||| |||||||||||||||||| | ||||||||||||||||| || || ||||| |||
Sbjct: 1 aagctcaagagattgggtactgtgcaggacatggctgcggctgccgcattcctggcatct 60
Query: 751 gacgacgcatcatacattacggctgaaaccattgttgttgctggaggggtgcagtctagg 810
||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 61 gacgatgcatcatacattacggctgaaacaattgttgttgctggagggacacagtctagg 120
Query: 811 ctgtaaatctggctgaagt 829
|||||||||||| ||||||
Sbjct: 121 ctgtaaatctggttgaagt 139
>gb|CL172602.1|CL172602 104_375_10890274_116_31797_178 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890274, DNA
sequence
Length = 600
Score = 168 bits (85), Expect = 6e-040
Identities = 112/121 (92%)
Strand = Plus / Minus
Query: 445 gctcctcacctacggaaggggtcatctgtgattattatttcttcaattgctggttacaat 504
||||| |||||||||| |||||||||||||||| |||| |||||||| | ||||||||||
Sbjct: 541 gctccccacctacggatggggtcatctgtgattcttatatcttcaatcggtggttacaat 482
Query: 505 ccagaacaaggattgacaatgtatggtgtcacaaagactgctctctttggtctcacgaag 564
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 481 ccagagcaaggattgacaatgtatggtgttacaaagactgctctctttggtctcacaaag 422
Query: 565 g 565
|
Sbjct: 421 g 421
Score = 167 bits (84), Expect = 2e-039
Identities = 99/104 (95%)
Strand = Plus / Minus
Query: 563 aggctcttgctggtgagatgggacccgatactcgtgttaactgtatagcccctggttttg 622
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 358 aggctcctgctggtgagatgggacccgatactcgtgttatctgtatagcccctggttttg 299
Query: 623 ttcctacacggtttgctagtttcctcacagaaaatgagaccatt 666
||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct: 298 ttcctacacggtttgctagtttcttcatagacaatgagaccatt 255
>gb|CW177379.1|CW177379 104_590_11158993_116_36590_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158993, DNA
sequence
Length = 599
Score = 167 bits (84), Expect = 2e-039
Identities = 99/104 (95%)
Strand = Plus / Minus
Query: 36 aaggtcggcctgcgcggcgatggatgtcaagtgccggcgtctggaggggaaggtggccat 95
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 104 aaggccggccagcgcggcgatggatgtcaagtgccggcgtctggaggggaaggtggccgt 45
Query: 96 cgtgacggcgtccacgatggggatcggcctcgccatcgccgagc 139
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 44 cgtgacggcgtccacgcaggggatcggcctcgccatcgccgagc 1
>gb|CW269701.1|CW269701 104_740_11401957_116_36229_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401957, DNA
sequence
Length = 634
Score = 105 bits (53), Expect = 8e-021
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 757 gcatcatacattacggctgaaaccattgttgttgctggaggggtgcagtctaggctgtaa 816
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 1 gcatcatacattacggctgaaacaattgttgttgctggagggacacagtctaggctgtaa 60
Query: 817 atctggctgaagt 829
|||||| ||||||
Sbjct: 61 atctggttgaagt 73
>gb|CW269700.1|CW269700 104_740_11401957_116_35320_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401957, DNA
sequence
Length = 571
Score = 89.7 bits (45), Expect = 5e-016
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 757 gcatcatacattacggctgaaaccattgttgttgctggaggggtgcagtctaggctgtaa 816
|||||||||||||||||||| || |||||||||||||||||| ||||||| |||||||
Sbjct: 1 gcatcatacattacggctgatacaattgttgttgctggagggacacagtctatgctgtaa 60
Query: 817 atctggctgaagt 829
|||||| ||||||
Sbjct: 61 atctggttgaagt 73
>gb|CW477810.1|CW477810 fsbb001f235f10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235f10, DNA
sequence
Length = 702
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 302 agagctttgggcacatagatattcttgtctccaatgctgccgcaaat 348
|||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct: 47 agagctttgggcacattgacattcttgtctccaacgctgctgcaaat 1
>gb|CW076887.1|CW076887 104_375_10890274_148_31796_178 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890274, DNA
sequence
Length = 199
Score = 46.1 bits (23), Expect = 0.006
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 306 ctttgggcacatagatattcttgtctccaatgctgccgcaaat 348
|||||||||||| |||| ||| |||||||||||| | ||||||
Sbjct: 157 ctttgggcacattgataatctagtctccaatgctactgcaaat 199
>gb|BZ349348.1|BZ349348 hq90e05.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hq90e05 5', DNA sequence
Length = 687
Score = 42.1 bits (21), Expect = 0.096
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 358 gatagcatacttgaaatgaaa 378
|||||||||||||||||||||
Sbjct: 596 gatagcatacttgaaatgaaa 576
>gb|CL166959.1|CL166959 104_363_10809742_114_31800_190 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10809742, DNA
sequence
Length = 759
Score = 42.1 bits (21), Expect = 0.096
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 358 gatagcatacttgaaatgaaa 378
|||||||||||||||||||||
Sbjct: 364 gatagcatacttgaaatgaaa 344
>gb|CW072269.1|CW072269 104_325_10592171_116_30539 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10592171, DNA
sequence
Length = 644
Score = 42.1 bits (21), Expect = 0.096
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 358 gatagcatacttgaaatgaaa 378
|||||||||||||||||||||
Sbjct: 212 gatagcatacttgaaatgaaa 192
>gb|CW283938.1|CW283938 104_760_11409508_116_35482_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11409508, DNA
sequence
Length = 649
Score = 42.1 bits (21), Expect = 0.096
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 358 gatagcatacttgaaatgaaa 378
|||||||||||||||||||||
Sbjct: 393 gatagcatacttgaaatgaaa 373
>gb|CW283939.1|CW283939 104_760_11409508_148_35486_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11409508, DNA
sequence
Length = 693
Score = 42.1 bits (21), Expect = 0.096
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 358 gatagcatacttgaaatgaaa 378
|||||||||||||||||||||
Sbjct: 531 gatagcatacttgaaatgaaa 551
>gb|CW498374.1|CW498374 fsbb001f291j05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f291j05, DNA
sequence
Length = 769
Score = 42.1 bits (21), Expect = 0.096
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 358 gatagcatacttgaaatgaaa 378
|||||||||||||||||||||
Sbjct: 257 gatagcatacttgaaatgaaa 237
>gb|BZ342488.1|BZ342488 ic83h06.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic83h06 5', DNA sequence
Length = 650
Score = 40.1 bits (20), Expect = 0.38
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 76 ctggaggggaaggtggccatcgtgacgg 103
||||| |||||||||||||| |||||||
Sbjct: 126 ctggacgggaaggtggccattgtgacgg 99
>gb|CW513474.1|CW513474 115_4_10511640_1_30021 Sorghum unfiltered library (LibID: 115)
Sorghum bicolor genomic clone 10511640, DNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.38
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 76 ctggaggggaaggtggccatcgtgacgg 103
||||| |||||||||||||| |||||||
Sbjct: 103 ctggacgggaaggtggccattgtgacgg 76
>gb|CW030899.1|CW030899 104_259_10500489_114_30397 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500489, DNA
sequence
Length = 803
Score = 40.1 bits (20), Expect = 0.38
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 154 ggcgccgccgtcgtcatctcctcc 177
|||||||||||||||| |||||||
Sbjct: 155 ggcgccgccgtcgtcacctcctcc 132
>gb|CW030900.1|CW030900 104_259_10500489_116_30398 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500489, DNA
sequence
Length = 833
Score = 40.1 bits (20), Expect = 0.38
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 154 ggcgccgccgtcgtcatctcctcc 177
|||||||||||||||| |||||||
Sbjct: 755 ggcgccgccgtcgtcacctcctcc 778
>gb|CW033844.1|CW033844 104_263_10502188_114_30359 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10502188, DNA
sequence
Length = 589
Score = 40.1 bits (20), Expect = 0.38
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 76 ctggaggggaaggtggccatcgtgacgg 103
||||| |||||||||||||| |||||||
Sbjct: 516 ctggacgggaaggtggccattgtgacgg 489
>gb|CW228650.1|CW228650 104_668_11206494_148_37253_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11206494, DNA
sequence
Length = 496
Score = 40.1 bits (20), Expect = 0.38
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 76 ctggaggggaaggtggccatcgtgacgg 103
||||| |||||||||||||| |||||||
Sbjct: 215 ctggacgggaaggtggccattgtgacgg 242
>gb|CW289716.1|CW289716 104_768_11412628_148_35550_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11412628, DNA
sequence
Length = 244
Score = 40.1 bits (20), Expect = 0.38
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 76 ctggaggggaaggtggccatcgtgacgg 103
||||| |||||||||||||| |||||||
Sbjct: 2 ctggacgggaaggtggccattgtgacgg 29
>gb|CW299302.1|CW299302 104_782_11463040_148_36236_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463040, DNA
sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.38
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 154 ggcgccgccgtcgtcatctcctcc 177
|||||||||||||||| |||||||
Sbjct: 197 ggcgccgccgtcgtcacctcctcc 220
>gb|CX620595.1|CX620595 GABR1_52_G03.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_52_G03_A002 5', mRNA sequence
Length = 437
Score = 40.1 bits (20), Expect = 0.38
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 76 ctggaggggaaggtggccatcgtgacgg 103
||||| |||||||||||||| |||||||
Sbjct: 271 ctggacgggaaggtggccattgtgacgg 298
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 276,194
Number of Sequences: 832831
Number of extensions: 276194
Number of successful extensions: 79895
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79819
Number of HSP's gapped (non-prelim): 74
length of query: 992
length of database: 491,359,669
effective HSP length: 20
effective length of query: 972
effective length of database: 474,703,049
effective search space: 461411363628
effective search space used: 461411363628
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)