BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3070703.2.1
(1214 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN126287.1|CN126287 RHOH1_16_F09.b1_A002 Acid- and alkal... 622 e-176
gb|CD228332.1|CD228332 CCC1_7_D11.b1_A007 Callus culture/ce... 551 e-155
gb|BG159292.1|BG159292 OV2_5_H06.g1_A002 Ovary 2 (OV2) Sorg... 537 e-151
gb|BG159555.1|BG159555 OV2_5_H06.b1_A002 Ovary 2 (OV2) Sorg... 531 e-149
gb|BG463311.1|BG463311 EM1_48_A03.g1_A002 Embryo 1 (EM1) So... 484 e-134
gb|CN135205.1|CN135205 OX1_31_F02.b1_A002 Oxidatively-stres... 470 e-130
gb|CN147765.1|CN147765 WOUND1_52_A01.b1_A002 Wounded leaves... 440 e-121
gb|CW338169.1|CW338169 104_838_11484601_148_36127_009 Sorgh... 434 e-120
gb|CW269978.1|CW269978 104_741_11402142_148_35329_025 Sorgh... 391 e-106
gb|CW445100.1|CW445100 fsbb001f170a14f0 Sorghum methylation... 248 1e-063
gb|CW338168.1|CW338168 104_838_11484601_116_36126_009 Sorgh... 204 1e-050
gb|CN135280.1|CN135280 OX1_31_F02.g1_A002 Oxidatively-stres... 200 2e-049
gb|CN123895.1|CN123895 RHOH1_1_H10.b1_A002 Acid- and alkali... 109 6e-022
gb|CW087850.1|CW087850 104_432_10947871_116_32556_022 Sorgh... 100 6e-019
gb|BQ656122.1|BQ656122 pRC1119 Sorghum halepense rhizome cD... 96 9e-018
gb|AW287265.2|AW287265 LG1_268_G06.b1_A002 Light Grown 1 (L... 92 1e-016
gb|CL190299.1|CL190299 104_408_10905986_116_32502_009 Sorgh... 90 6e-016
gb|CW109338.1|CW109338 104_481_11098049_116_34505_071 Sorgh... 90 6e-016
gb|CW249847.1|CW249847 104_711_11223065_116_35043_067 Sorgh... 90 6e-016
gb|CW352664.1|CW352664 fsbb001f015a20k0 Sorghum methylation... 90 6e-016
gb|CD233682.1|CD233682 SS1_3_B09.g1_A012 Salt-stressed seed... 84 3e-014
gb|CW352663.1|CW352663 fsbb001f015a20f0 Sorghum methylation... 70 5e-010
gb|CL172474.1|CL172474 104_375_10890187_148_31796_091 Sorgh... 64 3e-008
gb|CW109339.1|CW109339 104_481_11098049_148_34501_071 Sorgh... 64 3e-008
gb|CL172473.1|CL172473 104_375_10890187_116_31797_091 Sorgh... 62 1e-007
gb|CW087839.1|CW087839 104_432_10947865_114_32552_005 Sorgh... 56 8e-006
gb|CW087840.1|CW087840 104_432_10947865_116_32556_005 Sorgh... 56 8e-006
gb|BE597085.1|BE597085 PI1_70_E04.g1_A002 Pathogen induced ... 56 8e-006
gb|CL190298.1|CL190298 104_408_10905986_114_32484_009 Sorgh... 54 3e-005
gb|CD228436.1|CD228436 CCC1_7_D11.g1_A007 Callus culture/ce... 54 3e-005
gb|CL160781.1|CL160781 104_351_10805235_114_31824_291 Sorgh... 50 5e-004
gb|BE359967.1|BE359967 DG1_60_B02.g2_A002 Dark Grown 1 (DG1... 44 0.030
gb|CD233593.1|CD233593 SS1_3_B09.b1_A012 Salt-stressed seed... 44 0.030
gb|CL160782.1|CL160782 104_351_10805235_116_31825_291 Sorgh... 42 0.12
gb|CW300247.1|CW300247 104_783_11463552_116_36252_088 Sorgh... 42 0.12
gb|CL699151.2|CL699151 SP__Ba0042O11.r SP__Ba Sorghum propi... 42 0.12
gb|AW284262.1|AW284262 LG1_268_G06.g1_A002 Light Grown 1 (L... 42 0.12
gb|BG049722.1|BG049722 EM1_8_C12.g1_A002 Embryo 1 (EM1) Sor... 42 0.12
gb|BG356594.1|BG356594 EM1_24_E01.g1_A002 Embryo 1 (EM1) So... 42 0.12
gb|BG739395.1|BG739395 EM1_82_D08.g1_A002 Embryo 1 (EM1) So... 42 0.12
>gb|CN126287.1|CN126287 RHOH1_16_F09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_16_F09_A002 3', mRNA sequence
Length = 812
Score = 622 bits (314), Expect = e-176
Identities = 520/583 (89%), Gaps = 18/583 (3%)
Strand = Plus / Minus
Query: 65 taaaatgacaccaacgaaaagaggacctatacatataaatgaaactaatcaaggaacagg 124
||||||| || |||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 568 taaaatgtcaacaacaaaaagaggacctatatatat----gaaactaatcaaggaacagg 513
Query: 125 tagtgtattctccctgcgatactcttgtcttcttccagctctgcaataaaagaatcacga 184
||||| |||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 512 tagtgcattctctctgtgatacttttgtcttcttccagcactgcaataaaagaatcacga 453
Query: 185 ctcttctgttgctgtt-gctacgttttttctatggtgaagaaccaatcgtctgaaggcta 243
|| || |||||||||| |||| |||| ||||| |||||||||||| |||||||||||
Sbjct: 452 cttttgtgttgctgtttgctatgttt---ctatgttgaagaaccaattatctgaaggcta 396
Query: 244 tattgactgcacatggacggaccccttggatgaatctgagtgatgagtctctcaaccttt 303
||| ||||||||| ||| ||||||||| ||| |||||||||||||||||||||
Sbjct: 395 tatc-actgcacatagac----cccttggat----ctgcgtgatgagtctctcaaccttt 345
Query: 304 tgagctctgaatcaggctgacgcatatccgttcgggtgcgccttctgccatttccacgcc 363
|| |||||||||||||||| |||||||||| |||||||| |||||||||||||| |||
Sbjct: 344 -gaactctgaatcaggctgatccatatccgtttgggtgcgctttctgccatttccatgcc 286
Query: 364 tgggcaaggctttggccaagatccgtgtattgggctgtccagttgaggtccatgaggatt 423
||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct: 285 tgggcaaggctttggccaagatcagtgtattgggctgtccagttgaggtccttgtagatt 226
Query: 424 ttcgacggatcgctgtatacctcggcataatctccaggtctacgggcaagatattcgacc 483
||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct: 225 ttcgatggatcactgtatacctcagcataatctccgggtctacgggcaagatattcaacc 166
Query: 484 ttgatagaagctcccgttgccttcttgcaagcttctacaaactcagtcactgatctacct 543
||||| |||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct: 165 ttgatggaagctcctgttgccttcatgcaagctttcacaaactcattcactgatctacct 106
Query: 544 tggcctgttccgacattgtagattccaactttgcctggctgagctttaccaagagctttt 603
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 105 tgtcctgttccgacattgtagattccaactttgcctggctcagctttaccaagagctttg 46
Query: 604 acgtgagcatctacaagatctgtgacatcgatgtagtctctaa 646
|| || |||||||||||||||||||||||||||||||| ||||
Sbjct: 45 acatgggcatctacaagatctgtgacatcgatgtagtccctaa 3
>gb|CD228332.1|CD228332 CCC1_7_D11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_7_D11_A007 3', mRNA sequence
Length = 641
Score = 551 bits (278), Expect = e-155
Identities = 472/531 (88%), Gaps = 18/531 (3%)
Strand = Plus / Minus
Query: 65 taaaatgacaccaacgaaaagaggacctatacatataaatgaaactaatcaaggaacagg 124
||||||| || |||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 514 taaaatgtcaacaacaaaaagaggacctatatatat----gaaactaatcaaggaacagg 459
Query: 125 tagtgtattctccctgcgatactcttgtcttcttccagctctgcaataaaagaatcacga 184
||||| |||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 458 tagtgcattctctctgtgatacttttgtcttcttccagcactgcaataaaagaatcacga 399
Query: 185 ctcttctgttgctgtt-gctacgttttttctatggtgaagaaccaatcgtctgaaggcta 243
|| || |||||||||| |||| |||| ||||| |||||||||||| |||||||||||
Sbjct: 398 cttttgtgttgctgtttgctatgttt---ctatgttgaagaaccaattatctgaaggcta 342
Query: 244 tattgactgcacatggacggaccccttggatgaatctgagtgatgagtctctcaaccttt 303
||| ||||||||| ||| ||||||||| ||| |||||||||||||||||||||
Sbjct: 341 tatc-actgcacatagac----cccttggat----ctgcgtgatgagtctctcaaccttt 291
Query: 304 tgagctctgaatcaggctgacgcatatccgttcgggtgcgccttctgccatttccacgcc 363
|| |||||||||||||||| |||||||||| |||||||| |||||||||||||| |||
Sbjct: 290 -gaactctgaatcaggctgatccatatccgtttgggtgcgctttctgccatttccatgcc 232
Query: 364 tgggcaaggctttggccaagatccgtgtattgggctgtccagttgaggtccatgaggatt 423
||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct: 231 tgggcaaggctttggccaagatcagtgtattgggctgtccagttgaggtccttgtagatt 172
Query: 424 ttcgacggatcgctgtatacctcggcataatctccaggtctacgggcaagatattcgacc 483
||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct: 171 ttcgatggatcactgtatacctcagcataatctccgggtctacgggcaagatattcaacc 112
Query: 484 ttgatagaagctcccgttgccttcttgcaagcttctacaaactcagtcactgatctacct 543
||||| |||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct: 111 ttgatggaagctcctgttgccttcatgcaagctttcacaaactcattcactgatctacct 52
Query: 544 tggcctgttccgacattgtagattccaactttgcctggctgagctttacca 594
|| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 51 tgtcctgttccgacattgtagattccaactttgcctggctcagctttacca 1
>gb|BG159292.1|BG159292 OV2_5_H06.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 584
Score = 537 bits (271), Expect = e-151
Identities = 462/520 (88%), Gaps = 18/520 (3%)
Strand = Plus / Minus
Query: 65 taaaatgacaccaacgaaaagaggacctatacatataaatgaaactaatcaaggaacagg 124
||||||| || |||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 507 taaaatgtcaacaacaaaaagaggacctatatatat----gaaactaatcaaggaacagg 452
Query: 125 tagtgtattctccctgcgatactcttgtcttcttccagctctgcaataaaagaatcacga 184
||||| |||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 451 tagtgcattctctctgtgatacttttgtcttcttccagcactgcaataaaagaatcacga 392
Query: 185 ctcttctgttgctgtt-gctacgttttttctatggtgaagaaccaatcgtctgaaggcta 243
|| || |||||||||| |||| |||| ||||| |||||||||||| |||||||||||
Sbjct: 391 cttttgtgttgctgtttgctatgttt---ctatgttgaagaaccaattatctgaaggcta 335
Query: 244 tattgactgcacatggacggaccccttggatgaatctgagtgatgagtctctcaaccttt 303
||| ||||||||| ||| ||||||||| ||| |||||||||||||||||||||
Sbjct: 334 tatc-actgcacatagac----cccttggat----ctgcgtgatgagtctctcaaccttt 284
Query: 304 tgagctctgaatcaggctgacgcatatccgttcgggtgcgccttctgccatttccacgcc 363
|| |||||||||||||||| |||||||||| |||||||| |||||||||||||| |||
Sbjct: 283 -gaactctgaatcaggctgatccatatccgtttgggtgcgctttctgccatttccatgcc 225
Query: 364 tgggcaaggctttggccaagatccgtgtattgggctgtccagttgaggtccatgaggatt 423
||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct: 224 tgggcaaggctttggccaagatcagtgtattgggctgtccagttgaggtccttgtagatt 165
Query: 424 ttcgacggatcgctgtatacctcggcataatctccaggtctacgggcaagatattcgacc 483
||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct: 164 ttcgatggatcactgtatacctcagcataatctccgggtctacgggcaagatattcaacc 105
Query: 484 ttgatagaagctcccgttgccttcttgcaagcttctacaaactcagtcactgatctacct 543
||||| |||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct: 104 ttgatggaagctcctgttgccttcatgcaagctttcacaaactcattcactgatctacct 45
Query: 544 tggcctgttccgacattgtagattccaactttgcctggct 583
|| |||||||||||||||||||||||||||||||||||||
Sbjct: 44 tgtcctgttccgacattgtagattccaactttgcctggct 5
>gb|BG159555.1|BG159555 OV2_5_H06.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 484
Score = 531 bits (268), Expect = e-149
Identities = 437/488 (89%), Gaps = 14/488 (2%)
Strand = Plus / Minus
Query: 97 atataaatgaaactaatcaaggaacaggtagtgtattctccctgcgatactcttgtcttc 156
||||| ||||||||||||||||||||||||||| |||||| ||| |||||| ||||||||
Sbjct: 479 atatatatgaaactaatcaaggaacaggtagtgcattctctctgtgatacttttgtcttc 420
Query: 157 ttccagctctgcaataaaagaatcacgactcttctgttgctgtt-gctacgttttttcta 215
||||||| |||||||||||||||||||||| || |||||||||| |||| |||| |||
Sbjct: 419 ttccagcactgcaataaaagaatcacgacttttgtgttgctgtttgctatgttt---cta 363
Query: 216 tggtgaagaaccaatcgtctgaaggctatattgactgcacatggacggaccccttggatg 275
|| |||||||||||| |||||||||||||| ||||||||| ||| |||||||||
Sbjct: 362 tgttgaagaaccaattatctgaaggctatatc-actgcacatagac----cccttggat- 309
Query: 276 aatctgagtgatgagtctctcaaccttttgagctctgaatcaggctgacgcatatccgtt 335
||| ||||||||||||||||||||| || |||||||||||||||| ||||||||||
Sbjct: 308 ---ctgcgtgatgagtctctcaaccttt-gaactctgaatcaggctgatccatatccgtt 253
Query: 336 cgggtgcgccttctgccatttccacgcctgggcaaggctttggccaagatccgtgtattg 395
|||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 252 tgggtgcgctttctgccatttccatgcctgggcaaggctttggccaagatcagtgtattg 193
Query: 396 ggctgtccagttgaggtccatgaggattttcgacggatcgctgtatacctcggcataatc 455
||||||||||||||||||| || ||||||||| ||||| ||||||||||| ||||||||
Sbjct: 192 ggctgtccagttgaggtccttgtagattttcgatggatcactgtatacctcagcataatc 133
Query: 456 tccaggtctacgggcaagatattcgaccttgatagaagctcccgttgccttcttgcaagc 515
||| |||||||||||||||||||| |||||||| |||||||| ||||||||| |||||||
Sbjct: 132 tccgggtctacgggcaagatattcaaccttgatggaagctcctgttgccttcatgcaagc 73
Query: 516 ttctacaaactcagtcactgatctaccttggcctgttccgacattgtagattccaacttt 575
|| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 72 tttcacaaactcattcactgatctaccttgtcctgttccgacattgtagattccaacttt 13
Query: 576 gcctggct 583
||||||||
Sbjct: 12 gcctggct 5
>gb|BG463311.1|BG463311 EM1_48_A03.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 622
Score = 484 bits (244), Expect = e-134
Identities = 438/497 (88%), Gaps = 18/497 (3%)
Strand = Plus / Minus
Query: 65 taaaatgacaccaacgaaaagaggacctatacatataaatgaaactaatcaaggaacagg 124
||||||| || |||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 480 taaaatgtcaacaacaaaaagaggacctatatatat----gaaactaatcaaggaacagg 425
Query: 125 tagtgtattctccctgcgatactcttgtcttcttccagctctgcaataaaagaatcacga 184
||||| |||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 424 tagtgcattctctctgtgatacttttgtcttcttccagcactgcaataaaagaatcacga 365
Query: 185 ctcttctgttgctgtt-gctacgttttttctatggtgaagaaccaatcgtctgaaggcta 243
|| || |||||||||| |||| |||| ||||| |||||||||||| |||||| ||||
Sbjct: 364 cttttgtgttgctgtttgctatgttt---ctatgttgaagaaccaattatctgaaagcta 308
Query: 244 tattgactgcacatggacggaccccttggatgaatctgagtgatgagtctctcaaccttt 303
||| ||||||||| ||| ||||||||| ||| |||||||||||||||||||||
Sbjct: 307 tatc-actgcacatagac----cccttggat----ctgcgtgatgagtctctcaaccttt 257
Query: 304 tgagctctgaatcaggctgacgcatatccgttcgggtgcgccttctgccatttccacgcc 363
|| |||||||||||||||| |||||||||| |||||||| |||||||||||||| |||
Sbjct: 256 -gaactctgaatcaggctgatccatatccgtttgggtgcgctttctgccatttccatgcc 198
Query: 364 tgggcaaggctttggccaagatccgtgtattgggctgtccagttgaggtccatgaggatt 423
||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct: 197 tgggcaaggctttggccaagatcagtgtattgggctgtccagttgaggtccttgtagatt 138
Query: 424 ttcgacggatcgctgtatacctcggcataatctccaggtctacgggcaagatattcgacc 483
||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct: 137 ttcgatggatcactgtatacctcagcataatctccgggtctacgggcaagatattcaacc 78
Query: 484 ttgatagaagctcccgttgccttcttgcaagcttctacaaactcagtcactgatctacct 543
||||| |||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct: 77 ttgatggaagctcctgttgccttcatgcaagctttcacaaactcattcactgatctacct 18
Query: 544 tggcctgttccgacatt 560
|| ||||||||||||||
Sbjct: 17 tgtcctgttccgacatt 1
>gb|CN135205.1|CN135205 OX1_31_F02.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_31_F02_A002 3', mRNA sequence
Length = 683
Score = 470 bits (237), Expect = e-130
Identities = 431/490 (87%), Gaps = 18/490 (3%)
Strand = Plus / Minus
Query: 65 taaaatgacaccaacgaaaagaggacctatacatataaatgaaactaatcaaggaacagg 124
||||||| || |||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 473 taaaatgtcaacaacaaaaagaggacctatatatat----gaaactaatcaaggaacagg 418
Query: 125 tagtgtattctccctgcgatactcttgtcttcttccagctctgcaataaaagaatcacga 184
||||| |||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 417 tagtgcattctctctgtgatacttttgtcttcttccagcactgcaataaaagaatcacga 358
Query: 185 ctcttctgttgctgtt-gctacgttttttctatggtgaagaaccaatcgtctgaaggcta 243
|| || |||||||||| |||| |||| ||||| |||||||||||| |||||||||||
Sbjct: 357 cttttgtgttgctgtttgctatgttt---ctatgttgaagaaccaattatctgaaggcta 301
Query: 244 tattgactgcacatggacggaccccttggatgaatctgagtgatgagtctctcaaccttt 303
||| ||||||||| ||| ||||||||| ||| |||||||||||||||||||||
Sbjct: 300 tatc-actgcacatagac----cccttggat----ctgcgtgatgagtctctcaaccttt 250
Query: 304 tgagctctgaatcaggctgacgcatatccgttcgggtgcgccttctgccatttccacgcc 363
|| |||||||||||||||| | |||||||| |||||||| |||||||||||||| |||
Sbjct: 249 -gaactctgaatcaggctgatccgtatccgtttgggtgcgctttctgccatttccatgcc 191
Query: 364 tgggcaaggctttggccaagatccgtgtattgggctgtccagttgaggtccatgaggatt 423
||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct: 190 tgggcaaggctttggccaagatcagtgtattgggctgtccagttgaggtccttgtagatt 131
Query: 424 ttcgacggatcgctgtatacctcggcataatctccaggtctacgggcaagatattcgacc 483
||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct: 130 ttcgatggatcactgtatacctcagcataatctccgggtctacgggcaagatattcaacc 71
Query: 484 ttgatagaagctcccgttgccttcttgcaagcttctacaaactcagtcactgatctacct 543
||||| |||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct: 70 ttgatggaagctcctgttgccttcatgcaagctttcacaaactcattcactgatctacct 11
Query: 544 tggcctgttc 553
|| |||||||
Sbjct: 10 tgtcctgttc 1
>gb|CN147765.1|CN147765 WOUND1_52_A01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_52_A01_A002 3', mRNA sequence
Length = 625
Score = 440 bits (222), Expect = e-121
Identities = 424/486 (87%), Gaps = 14/486 (2%)
Strand = Plus / Minus
Query: 97 atataaatgaaactaatcaaggaacaggtagtgtattctccctgcgatactcttgtcttc 156
||||| |||||||||||| |||||||||||||| |||||| ||| |||||| ||||||||
Sbjct: 473 atatatatgaaactaatccaggaacaggtagtgcattctctctgtgatacttttgtcttc 414
Query: 157 ttccagctctgcaataaaagaatcacgactcttctgttgctgtt-gctacgttttttcta 215
||||| | |||||||||||||||||| ||| || |||||||||| |||| | || |||
Sbjct: 413 ttccaacactgcaataaaagaatcacaacttttgtgttgctgtttgctatggtt---cta 357
Query: 216 tggtgaagaaccaatcgtctgaaggctatattgactgcacatggacggaccccttggatg 275
| |||||||||||| |||||||||||||| ||||||||| ||| |||||||||
Sbjct: 356 agttgaagaaccaattatctgaaggctatatc-actgcacatagac----cccttggat- 303
Query: 276 aatctgagtgatgagtctctcaaccttttgagctctgaatcaggctgacgcatatccgtt 335
||| ||||||||||||||||||||| || |||||||||||||||| ||||||||||
Sbjct: 302 ---ctgcgtgatgagtctctcaaccttt-gaactctgaatcaggctgatccatatccgtt 247
Query: 336 cgggtgcgccttctgccatttccacgcctgggcaaggctttggccaagatccgtgtattg 395
|||||||| |||||||||||||| ||||||| |||||||||||||| ||| ||||||||
Sbjct: 246 tgggtgcgctttctgccatttccatgcctgggaaaggctttggccaaaatcagtgtattg 187
Query: 396 ggctgtccagttgaggtccatgaggattttcgacggatcgctgtatacctcggcataatc 455
|||||||||||| | |||| || ||||||| | ||||| ||||||||||| |||||||
Sbjct: 186 ggctgtccagttcaagtccttgtagattttccatggatcactgtatacctcaacataatc 127
Query: 456 tccaggtctacgggcaagatattcgaccttgatagaagctcccgttgccttcttgcaagc 515
||| |||||||||||||||||||| |||||||| |||||||| ||||||||| |||||||
Sbjct: 126 tccgggtctacgggcaagatattcaaccttgatggaagctcctgttgccttcatgcaagc 67
Query: 516 ttctacaaactcagtcactgatctaccttggcctgttccgacattgtagattccaacttt 575
|| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 66 tttcacaaactcattcactgatctaccttgtcctgttccgacattgtagattccaacttt 7
Query: 576 gcctgg 581
||||||
Sbjct: 6 gcctgg 1
>gb|CW338169.1|CW338169 104_838_11484601_148_36127_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484601, DNA
sequence
Length = 604
Score = 434 bits (219), Expect = e-120
Identities = 419/480 (87%), Gaps = 18/480 (3%)
Strand = Plus / Plus
Query: 65 taaaatgacaccaacgaaaagaggacctatacatataaatgaaactaatcaaggaacagg 124
||||||| || |||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 78 taaaatgtcaacaacaaaaagaggacctatatatat----gaaactaatcaaggaacagg 133
Query: 125 tagtgtattctccctgcgatactcttgtcttcttccagctctgcaataaaagaatcacga 184
||||| |||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 134 tagtgcattctctctgtgatacttttgtcttcttccagcactgcaataaaagaatcacga 193
Query: 185 ctcttctgttgctgtt-gctacgttttttctatggtgaagaaccaatcgtctgaaggcta 243
|| || |||||||||| |||| |||| ||||| |||||||||||| |||||||||||
Sbjct: 194 cttttgtgttgctgtttgctatgttt---ctatgttgaagaaccaattatctgaaggcta 250
Query: 244 tattgactgcacatggacggaccccttggatgaatctgagtgatgagtctctcaaccttt 303
||| ||||||||| ||| ||||||||| ||| |||||||||||||||||||||
Sbjct: 251 tatc-actgcacatagac----cccttggat----ctgcgtgatgagtctctcaaccttt 301
Query: 304 tgagctctgaatcaggctgacgcatatccgttcgggtgcgccttctgccatttccacgcc 363
|| |||||||||| ||||| |||||||||| |||||||| |||||||||||||| |||
Sbjct: 302 -gaactctgaatcatgctgatccatatccgtttgggtgcgctttctgccatttccatgcc 360
Query: 364 tgggcaaggctttggccaagatccgtgtattgggctgtccagttgaggtccatgaggatt 423
||||||||||||||||||||||| |||||||| ||||||||| ||||| || || ||||
Sbjct: 361 tgggcaaggctttggccaagatcagtgtattgcgctgtccagatgaggaccttgtagatt 420
Query: 424 ttcgacggatcgctgtatacctcggcataatctccaggtctacgggcaagatattcgacc 483
||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct: 421 ttcgatggatcactgtatacctcagcataatctccgggtctacgggcaagatattcaacc 480
Query: 484 ttgatagaagctcccgttgccttcttgcaagcttctacaaactcagtcactgatctacct 543
||||| |||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct: 481 ttgatggaagctcctgttgccttcatgcaagctttcacaaactcattcactgatctacct 540
>gb|CW269978.1|CW269978 104_741_11402142_148_35329_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402142, DNA
sequence
Length = 599
Score = 391 bits (197), Expect = e-106
Identities = 348/393 (88%), Gaps = 14/393 (3%)
Strand = Plus / Minus
Query: 152 tcttcttccagctctgcaataaaagaatcacgactcttctgttgctgtt-gctacgtttt 210
|||||||||||| |||||||||||||||||||||| || |||||||||| |||| ||||
Sbjct: 599 tcttcttccagcactgcaataaaagaatcacgacttttgtgttgctgtttgctatgttt- 541
Query: 211 ttctatggtgaagaaccaatcgtctgaaggctatattgactgcacatggacggacccctt 270
||||| |||||||||||| |||||||||||||| ||||||||| ||| |||||
Sbjct: 540 --ctatgttgaagaaccaattatctgaaggctatatc-actgcacatagac----ccctt 488
Query: 271 ggatgaatctgagtgatgagtctctcaaccttttgagctctgaatcaggctgacgcatat 330
|||| ||| ||||||||||||||||||||| || |||||||||||||||| |||||
Sbjct: 487 ggat----ctgcgtgatgagtctctcaaccttt-gaactctgaatcaggctgatccatat 433
Query: 331 ccgttcgggtgcgccttctgccatttccacgcctgggcaaggctttggccaagatccgtg 390
||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 432 ccgtttgggtgcgctttctgccatttccatgcctgggcaaggctttggccaagatcagtg 373
Query: 391 tattgggctgtccagttgaggtccatgaggattttcgacggatcgctgtatacctcggca 450
|||||||||||||||||||||||| || ||||||||| ||||| ||||||||||| |||
Sbjct: 372 tattgggctgtccagttgaggtccttgtagattttcgatggatcactgtatacctcagca 313
Query: 451 taatctccaggtctacgggcaagatattcgaccttgatagaagctcccgttgccttcttg 510
|||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||| ||
Sbjct: 312 taatctccgggtctacgggcaagatattcaaccttgatggaagctcctgttgccttcatg 253
Query: 511 caagcttctacaaactcagtcactgatctacct 543
||||||| ||||||||| ||||||||||||||
Sbjct: 252 caagctttcacaaactcattcactgatctacct 220
Score = 155 bits (78), Expect = 1e-035
Identities = 93/98 (94%)
Strand = Plus / Minus
Query: 540 accttggcctgttccgacattgtagattccaactttgcctggctgagctttaccaagagc 599
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 98 accttgtcctgttccgacattgtagattccaactttgcctggctcagctttaccaagagc 39
Query: 600 ttttacgtgagcatctacaagatctgtgacatcgatgt 637
||| || || ||||||||||||||||||||||||||||
Sbjct: 38 tttgacatgggcatctacaagatctgtgacatcgatgt 1
>gb|CW445100.1|CW445100 fsbb001f170a14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f170a14, DNA
sequence
Length = 662
Score = 248 bits (125), Expect = 1e-063
Identities = 140/145 (96%)
Strand = Plus / Plus
Query: 921 ctgaggagttgtttctacaataggcatcgtatcaggttcaccataggttgcacacgtact 980
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 116 ctgaggagttgtttctacaataggcatcgtatcaggttcaccgtaggttgcacatgtact 175
Query: 981 cgagtaaatcagagtatttacattatatgctgccattgcctcaagaactgtcaatgtgtt 1040
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 176 cgagtaaatcagagtatttacattgtgtgctgccattgcctcaagaactgtcaatgtgtt 235
Query: 1041 cgatgttatgttgtggtagtacctg 1065
||||||||||||||||||||||||
Sbjct: 236 tgatgttatgttgtggtagtacctg 260
Score = 123 bits (62), Expect = 4e-026
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 1060 tacctgagtggctccattgtgctctcaccaacataagcaacagcagcaaagtgcataaca 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tacctgagtggctccattgtgctctcaccaacataagcaacagcagcaaagtgcataaca 659
Query: 1120 gc 1121
||
Sbjct: 660 gc 661
Score = 67.9 bits (34), Expect = 2e-009
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 890 tctttgccttaccatatggattgataggattctg 923
||||||||||||||||||||||||||||||||||
Sbjct: 1 tctttgccttaccatatggattgataggattctg 34
>gb|CW338168.1|CW338168 104_838_11484601_116_36126_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484601, DNA
sequence
Length = 621
Score = 204 bits (103), Expect = 1e-050
Identities = 166/187 (88%)
Strand = Plus / Minus
Query: 355 ttccacgcctgggcaaggctttggccaagatccgtgtattgggctgtccagttgaggtcc 414
||||| || ||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 621 ttccatgcatgggcaaggctttggccaagatcagtgtattggactgtccagttgaggtcc 562
Query: 415 atgaggattttcgacggatcgctgtatacctcggcataatctccaggtctacgggcaaga 474
|| ||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct: 561 ttgtagattttcgatggatcactgtatacctcagcataatctccgggtctacgggcaaga 502
Query: 475 tattcgaccttgatagaagctcccgttgccttcttgcaagcttctacaaactcagtcact 534
||||| |||||||| |||||||| ||||| ||| ||||||||| ||||| || |||||
Sbjct: 501 tattcaaccttgatggaagctcctgttgcgttcatgcaagctttcacaaagtctttcact 442
Query: 535 gatctac 541
|||||||
Sbjct: 441 gatctac 435
Score = 192 bits (97), Expect = 5e-047
Identities = 136/149 (91%)
Strand = Plus / Minus
Query: 540 accttggcctgttccgacattgtagattccaactttgcctggctgagctttaccaagagc 599
|||||| ||||||| ||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct: 311 accttgtcctgttcggacatggtagattccaactttgcctggctcagctttaccaagtgc 252
Query: 600 ttttacgtgagcatctacaagatctgtgacatcgatgtagtctctaacgcaagttccatc 659
||| || || |||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 251 tttgacatgggcatctacaagatctgtgacatcgatgtagtccctaatgcaagttccatg 192
Query: 660 tgcagtggagtaatcggttccacgaacct 688
|||||||| |||||| |||||||||||||
Sbjct: 191 tgcagtggggtaatcagttccacgaacct 163
Score = 77.8 bits (39), Expect = 2e-012
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 685 acctttagccctggaatgattcccaaagctgcatcaaagcaagcacc 731
||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 48 acctttagccctggaatgattcccagagttgcatcaaagcaagcacc 2
>gb|CN135280.1|CN135280 OX1_31_F02.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_31_F02_A002 5', mRNA sequence
Length = 787
Score = 200 bits (101), Expect = 2e-049
Identities = 121/128 (94%)
Strand = Plus / Minus
Query: 1079 tgctctcaccaacataagcaacagcagcaaagtgcataacagcgtcaaatgcattctccg 1138
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 787 tgctctcaccaacataagcaacagcagcaaagtgcataacagcatcaaatgcattctccg 728
Query: 1139 aaaatattttcttcacagctttggcatcgcctaagtcagcataaataaactgaagccttc 1198
|||||||||| |||||||||| ||||||||| || |||||||||||||| ||||||||||
Sbjct: 727 aaaatattttgttcacagcttnggcatcgcccaaatcagcataaataaattgaagccttc 668
Query: 1199 cgggttct 1206
| ||||||
Sbjct: 667 caggttct 660
>gb|CN123895.1|CN123895 RHOH1_1_H10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_1_H10_A002 3', mRNA sequence
Length = 747
Score = 109 bits (55), Expect = 6e-022
Identities = 193/239 (80%)
Strand = Plus / Minus
Query: 598 gcttttacgtgagcatctacaagatctgtgacatcgatgtagtctctaacgcaagttcca 657
||||| || |||||||| || | |||||||||||| || || ||||| | ||| ||||||
Sbjct: 259 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 200
Query: 658 tctgcagtggagtaatcggttccacgaacctttagccctggaatgattcccaaagctgca 717
|| || |||| ||||| ||||| |||||| | |||||||||| ||| || ||||||
Sbjct: 199 tcagctgtgggataatctgttcctttaaccttcaatcctggaatgactcctaatgctgca 140
Query: 718 tcaaagcaagcaccggatatccgtccatgctcgcgtagctctggccttggagcttctcct 777
|| ||||| || || |||||||| |||||||| || || |||||||| ||||| || |||
Sbjct: 139 tcgaagcatgccccagatatccgaccatgctctcggagttctggcctaggagcctcacct 80
Query: 778 agccgtccctctgggtctgatccaatcacgttgaagtatcttaagatcatgacagccat 836
| | |||||| ||||| || ||||| || ||||| |||||||| ||||||||||||||
Sbjct: 79 aatcttccctcagggtcagagccaataacattgaaatatcttaaaatcatgacagccat 21
Score = 50.1 bits (25), Expect = 5e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 382 agatccgtgtattgggctgtccagttgaggtccatgaggattttcgacggatcgctgtat 441
||||| || ||||| |||||||||||||| ||| || ||| || | ||||||||||||
Sbjct: 475 agatcggtatattgagctgtccagttgagctccttgttgatctttgttggatcgctgtat 416
Query: 442 acctcggcataatctcc 458
|| || |||||||||||
Sbjct: 415 acttctgcataatctcc 399
>gb|CW087850.1|CW087850 104_432_10947871_116_32556_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947871, DNA
sequence
Length = 732
Score = 99.6 bits (50), Expect = 6e-019
Identities = 87/99 (87%), Gaps = 4/99 (4%)
Strand = Plus / Minus
Query: 65 taaaatgacaccaacgaaaagaggacctatacatataaatgaaactaatcaaggaacagg 124
||||||| || |||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 98 taaaatgtcaacaacaaaaagaggacctatatatat----gaaactaatcaaggaacagg 43
Query: 125 tagtgtattctccctgcgatactcttgtcttcttccagc 163
||||| |||||| ||| |||||| |||||||||||||||
Sbjct: 42 tagtgcattctctctgtgatacttttgtcttcttccagc 4
>gb|BQ656122.1|BQ656122 pRC1119 Sorghum halepense rhizome cDNA library Sorghum halepense
cDNA clone pRC1119, mRNA sequence
Length = 862
Score = 95.6 bits (48), Expect = 9e-018
Identities = 193/240 (80%), Gaps = 1/240 (0%)
Strand = Plus / Minus
Query: 598 gcttttacgtgagcatctacaagatctgtgacatcgatgtagtctctaacgcaagttcca 657
||||| || |||||||| || | |||||||||||| || || ||||| | ||| ||||||
Sbjct: 299 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 240
Query: 658 tctgcagtggagtaatcggttccacgaacctttagccctggaatgattcccaaagctgca 717
|| || |||| ||||| ||||| |||||| | |||||||||| ||| || ||||||
Sbjct: 239 tcagctgtgggataatctgttcctttaaccttcaatcctggaatgactcctaatgctgca 180
Query: 718 tcaaagcaagcaccggatatccgtccatgctcgcgtagctctggccttggagcttctcct 777
|| ||||| || || |||||||| |||||||| || || |||||||| ||||| || |||
Sbjct: 179 tcgaagcatgccccagatatccgaccatgctctcggagttctggcctaggagcctcacct 120
Query: 778 agccgtccctctgggtctga-tccaatcacgttgaagtatcttaagatcatgacagccat 836
| | |||||| ||||| || ||||| || ||||| |||||||| ||||||||||||||
Sbjct: 119 aatcttccctcagggtcagaggccaataacattgaaatatcttaaaatcatgacagccat 60
Score = 50.1 bits (25), Expect = 5e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 382 agatccgtgtattgggctgtccagttgaggtccatgaggattttcgacggatcgctgtat 441
||||| || ||||| |||||||||||||| ||| || ||| || | ||||||||||||
Sbjct: 515 agatcggtatattgagctgtccagttgagctccttgttgatctttgttggatcgctgtat 456
Query: 442 acctcggcataatctcc 458
|| || |||||||||||
Sbjct: 455 acttctgcataatctcc 439
>gb|AW287265.2|AW287265 LG1_268_G06.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 501
Score = 91.7 bits (46), Expect = 1e-016
Identities = 73/82 (89%)
Strand = Plus / Minus
Query: 1078 gtgctctcaccaacataagcaacagcagcaaagtgcataacagcgtcaaatgcattctcc 1137
||||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||
Sbjct: 247 gtgctctcaccaacataggccacagcagcaaagtgcataacagcatcaaatgcgttctct 188
Query: 1138 gaaaatattttcttcacagctt 1159
| ||||||| | || |||||||
Sbjct: 187 gcaaatattctattaacagctt 166
Score = 69.9 bits (35), Expect = 5e-010
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 848 tctttgattttgtaaaatctaagatgatgtcctccgccatcttctttgccttaccatatg 907
||||||| |||| || ||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 477 tctttgactttgagaagtctaagatgatatcctccgccattttcttggccttaccatatg 418
Query: 908 gattgat 914
| |||||
Sbjct: 417 ggttgat 411
>gb|CL190299.1|CL190299 104_408_10905986_116_32502_009 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10905986, DNA
sequence
Length = 633
Score = 89.7 bits (45), Expect = 6e-016
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 1078 gtgctctcaccaacataagcaacagcagcaaagtgcataacagcgtcaaatgcattctcc 1137
||||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||
Sbjct: 432 gtgctctcaccaacataggccacagcagcaaagtgcataacagcatcaaatgcgttctct 373
Query: 1138 gaaaatatt 1146
| |||||||
Sbjct: 372 gcaaatatt 364
>gb|CW109338.1|CW109338 104_481_11098049_116_34505_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11098049, DNA
sequence
Length = 622
Score = 89.7 bits (45), Expect = 6e-016
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 1078 gtgctctcaccaacataagcaacagcagcaaagtgcataacagcgtcaaatgcattctcc 1137
||||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||
Sbjct: 540 gtgctctcaccaacataggccacagcagcaaagtgcataacagcatcaaatgcgttctct 599
Query: 1138 gaaaatatt 1146
| |||||||
Sbjct: 600 gcaaatatt 608
Score = 69.9 bits (35), Expect = 5e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 848 tctttgattttgtaaaatctaagatgatgtcctccgccatcttctttgccttaccatatg 907
||||||| |||| || ||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 82 tctttgactttgagaagtctaagatgatatcctccgccattttcttggccttaccatatg 141
Query: 908 gattgat 914
| |||||
Sbjct: 142 ggttgat 148
>gb|CW249847.1|CW249847 104_711_11223065_116_35043_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223065, DNA
sequence
Length = 505
Score = 89.7 bits (45), Expect = 6e-016
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 1078 gtgctctcaccaacataagcaacagcagcaaagtgcataacagcgtcaaatgcattctcc 1137
||||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||
Sbjct: 377 gtgctctcaccaacataggccacagcagcaaagtgcataacagcatcaaatgcgttctct 436
Query: 1138 gaaaatatt 1146
| |||||||
Sbjct: 437 gcaaatatt 445
>gb|CW352664.1|CW352664 fsbb001f015a20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f015a20, DNA
sequence
Length = 785
Score = 89.7 bits (45), Expect = 6e-016
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 1078 gtgctctcaccaacataagcaacagcagcaaagtgcataacagcgtcaaatgcattctcc 1137
||||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||
Sbjct: 221 gtgctctcaccaacataggccacagcagcaaagtgcataacagcatcaaatgcgttctct 162
Query: 1138 gaaaatatt 1146
| |||||||
Sbjct: 161 gcaaatatt 153
Score = 69.9 bits (35), Expect = 5e-010
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 848 tctttgattttgtaaaatctaagatgatgtcctccgccatcttctttgccttaccatatg 907
||||||| |||| || ||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 679 tctttgactttgagaagtctaagatgatatcctccgccattttcttggccttaccatatg 620
Query: 908 gattgat 914
| |||||
Sbjct: 619 ggttgat 613
>gb|CD233682.1|CD233682 SS1_3_B09.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone
SS1_3_B09_A012 5', mRNA sequence
Length = 671
Score = 83.8 bits (42), Expect = 3e-014
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 1078 gtgctctcaccaacataagcaacagcagcaaagtgcataacagcgtcaaatgcattctcc 1137
||||||||||||||||| || ||||| ||||||||||||||||| |||||||| |||||
Sbjct: 614 gtgctctcaccaacataggccacagctgcaaagtgcataacagcatcaaatgcgttctct 555
Query: 1138 gaaaatattttcttcacagctt 1159
| ||||||| | || |||||||
Sbjct: 554 gcaaatattctattaacagctt 533
>gb|CW352663.1|CW352663 fsbb001f015a20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f015a20, DNA
sequence
Length = 711
Score = 69.9 bits (35), Expect = 5e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 848 tctttgattttgtaaaatctaagatgatgtcctccgccatcttctttgccttaccatatg 907
||||||| |||| || ||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 267 tctttgactttgagaagtctaagatgatatcctccgccattttcttggccttaccatatg 326
Query: 908 gattgat 914
| |||||
Sbjct: 327 ggttgat 333
Score = 50.1 bits (25), Expect = 5e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 685 acctttagccctggaatgattcccaaagctgcatcaaagcaagcaccggatatccgtcca 744
||||||| |||||||||||||||| ||||| |||||||| || || ||||| || |||
Sbjct: 9 acctttaaacctggaatgattcccagtgctgcgtcaaagcatgcccccgatatacggcca 68
Query: 745 tgctc 749
|||||
Sbjct: 69 tgctc 73
>gb|CL172474.1|CL172474 104_375_10890187_148_31796_091 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890187, DNA
sequence
Length = 706
Score = 63.9 bits (32), Expect = 3e-008
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 715 gcatcaaagcaagcaccggatatccgtccatgctcgcgtagctctggccttggagcttct 774
||||||||||| ||||||||||| || || ||||| || | || || |||||||| ||
Sbjct: 485 gcatcaaagcaggcaccggatattcgaccttgctcccgcaattcaggtcttggagcctcg 426
Query: 775 cctagccgtccctctgggtctgatccaatcacgttgaagtatct 818
|| | | ||| || |||||||||||||||||||||||||||||
Sbjct: 425 cccaatcttccttcagggtctgatccaatcacgttgaagtatct 382
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 877 tcctccgccatcttctttgccttaccatatggatt 911
||||||||||||||||| || ||||||||||||||
Sbjct: 164 tcctccgccatcttcttggctttaccatatggatt 130
>gb|CW109339.1|CW109339 104_481_11098049_148_34501_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11098049, DNA
sequence
Length = 575
Score = 63.9 bits (32), Expect = 3e-008
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 1099 acagcagcaaagtgcataacagcgtcaaatgcattctccgaaaatatt 1146
||||||||||||||||||||||| |||||||| ||||| | |||||||
Sbjct: 568 acagcagcaaagtgcataacagcatcaaatgcgttctctgcaaatatt 521
>gb|CL172473.1|CL172473 104_375_10890187_116_31797_091 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890187, DNA
sequence
Length = 677
Score = 61.9 bits (31), Expect = 1e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 593 caagagcttttacgtgagcatctacaagatctgtgacatcgatgtagtctctaacgcaag 652
|||||||||| || |||||||| || |||||||| |||||||| || |||| || |||||
Sbjct: 476 caagagctttcacatgagcatcaaccagatctgttacatcgatataatctccaatgcaag 535
Query: 653 ttccatc 659
|||||||
Sbjct: 536 ttccatc 542
>gb|CW087839.1|CW087839 104_432_10947865_114_32552_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947865, DNA
sequence
Length = 739
Score = 56.0 bits (28), Expect = 8e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 862 aaatctaagatgatgtcctccgccatcttctttgccttaccatatggattgatagg 917
|||||||| ||||| ||||| ||||| ||||| || || |||||||||||||||||
Sbjct: 466 aaatctaatatgatatcctctgccattttcttagcttttccatatggattgatagg 521
>gb|CW087840.1|CW087840 104_432_10947865_116_32556_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947865, DNA
sequence
Length = 675
Score = 56.0 bits (28), Expect = 8e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 862 aaatctaagatgatgtcctccgccatcttctttgccttaccatatggattgatagg 917
|||||||| ||||| ||||| ||||| ||||| || || |||||||||||||||||
Sbjct: 666 aaatctaatatgatatcctctgccattttcttagcttttccatatggattgatagg 611
>gb|BE597085.1|BE597085 PI1_70_E04.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 623
Score = 56.0 bits (28), Expect = 8e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 1099 acagcagcaaagtgcataacagcgtcaaatgcattctccgaaaatatt 1146
|||||||||||||||||| |||| |||||||| ||||| | |||||||
Sbjct: 4 acagcagcaaagtgcataccagcatcaaatgcgttctctgcaaatatt 51
>gb|CL190298.1|CL190298 104_408_10905986_114_32484_009 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10905986, DNA
sequence
Length = 689
Score = 54.0 bits (27), Expect = 3e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 848 tctttgattttgtaaaatctaagatgatgtcctccgccatcttctttgccttaccatatg 907
||||||| |||| || ||||||||||| ||||||||||| ||||| | | |||||||||
Sbjct: 563 tctttgactttgagaagtctaagatgatatcctccgccattttcttgggcctaccatatg 622
Query: 908 gattgat 914
| |||||
Sbjct: 623 ggttgat 629
Score = 50.1 bits (25), Expect = 5e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 685 acctttagccctggaatgattcccaaagctgcatcaaagcaagcaccggatatccgtcca 744
||||||| |||||||||||||||| ||||| |||||||| || || ||||| || |||
Sbjct: 305 acctttaaacctggaatgattcccagtgctgcgtcaaagcatgcccccgatatacggcca 364
Query: 745 tgctc 749
|||||
Sbjct: 365 tgctc 369
>gb|CD228436.1|CD228436 CCC1_7_D11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_7_D11_A007 5', mRNA sequence
Length = 655
Score = 54.0 bits (27), Expect = 3e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 1164 atcgcctaagtcagcataaataaactgaagccttccgggttct 1206
|||||| || |||||||||||||| ||||||||||| ||||||
Sbjct: 655 atcgcccaaatcagcataaataaattgaagccttccaggttct 613
>gb|CL160781.1|CL160781 104_351_10805235_114_31824_291 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805235, DNA
sequence
Length = 632
Score = 50.1 bits (25), Expect = 5e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 382 agatccgtgtattgggctgtccagttgaggtccatgaggattttcgacggatcgctgtat 441
||||| || ||||| |||||||||||||| ||| || ||| || | ||||||||||||
Sbjct: 469 agatcggtatattgagctgtccagttgagctccttgttgatctttgttggatcgctgtat 528
Query: 442 acctcggcataatctcc 458
|| || |||||||||||
Sbjct: 529 acatctgcataatctcc 545
>gb|BE359967.1|BE359967 DG1_60_B02.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 635
Score = 44.1 bits (22), Expect = 0.030
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 684 aacctttagccctggaatgattcccaaagctgcatcaaagca 725
|||||||| |||||||||||||||| ||||| ||||||||
Sbjct: 54 aacctttaaacctggaatgattcccagtgctgcgtcaaagca 13
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 339 gtgcgccttctgccatttccacgcc 363
|||||||||||||||| ||||||||
Sbjct: 399 gtgcgccttctgccatgtccacgcc 375
>gb|CD233593.1|CD233593 SS1_3_B09.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_3_B09_A012 3', mRNA sequence
Length = 655
Score = 44.1 bits (22), Expect = 0.030
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 684 aacctttagccctggaatgattcccaaagctgcatcaaagca 725
|||||||| |||||||||||||||| ||||| ||||||||
Sbjct: 48 aacctttaaacctggaatgattcccagtgctgcgtcaaagca 7
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 339 gtgcgccttctgccatttccacgcc 363
|||||||||||||||| ||||||||
Sbjct: 393 gtgcgccttctgccatgtccacgcc 369
>gb|CL160782.1|CL160782 104_351_10805235_116_31825_291 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805235, DNA
sequence
Length = 717
Score = 42.1 bits (21), Expect = 0.12
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 862 aaatctaagatgatgtcctccgccatcttctttgccttaccatatggattgat 914
|||||||| ||||| ||||| | ||| ||||| || || ||||||||||||||
Sbjct: 53 aaatctaatatgatatcctctgacattttcttagcttttccatatggattgat 1
>gb|CW300247.1|CW300247 104_783_11463552_116_36252_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463552, DNA
sequence
Length = 501
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 430 ggatcgctgtatacctcggcataatctcc 458
|||||||||||||| || |||||||||||
Sbjct: 460 ggatcgctgtatacttctgcataatctcc 488
>gb|CL699151.2|CL699151 SP__Ba0042O11.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0042O11 3', DNA sequence
Length = 643
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 878 cctccgccatcttctttgcct 898
|||||||||||||||||||||
Sbjct: 69 cctccgccatcttctttgcct 89
>gb|AW284262.1|AW284262 LG1_268_G06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 439
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 339 gtgcgccttctgccatttccacgcc 363
|||||||||||||||| ||||||||
Sbjct: 167 gtgcgccttctgccatgtccacgcc 143
>gb|BG049722.1|BG049722 EM1_8_C12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 620
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 339 gtgcgccttctgccatttccacgcc 363
|||||||||||||||| ||||||||
Sbjct: 371 gtgcgccttctgccatgtccacgcc 347
>gb|BG356594.1|BG356594 EM1_24_E01.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 463
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 339 gtgcgccttctgccatttccacgcc 363
|||||||||||||||| ||||||||
Sbjct: 244 gtgcgccttctgccatgtccacgcc 220
>gb|BG739395.1|BG739395 EM1_82_D08.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 574
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 339 gtgcgccttctgccatttccacgcc 363
|||||||||||||||| ||||||||
Sbjct: 317 gtgcgccttctgccatgtccacgcc 293
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 296,007
Number of Sequences: 832831
Number of extensions: 296007
Number of successful extensions: 81004
Number of sequences better than 0.5: 40
Number of HSP's better than 0.5 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80873
Number of HSP's gapped (non-prelim): 103
length of query: 1214
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1194
effective length of database: 474,703,049
effective search space: 566795440506
effective search space used: 566795440506
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)