BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067516.2.1
(605 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW103503.1|CW103503 104_472_11011923_148_34434_012 Sorgh... 793 0.0
gb|CW415985.1|CW415985 fsbb001f116f10k0 Sorghum methylation... 694 0.0
gb|CW103502.1|CW103502 104_472_11011923_116_34430_012 Sorgh... 250 1e-064
gb|CW090428.1|CW090428 104_436_10949276_114_32607_076 Sorgh... 40 0.23
gb|CW451002.1|CW451002 fsbb001f189o07f0 Sorghum methylation... 40 0.23
>gb|CW103503.1|CW103503 104_472_11011923_148_34434_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11011923, DNA
sequence
Length = 605
Score = 793 bits (400), Expect = 0.0
Identities = 503/536 (93%), Gaps = 1/536 (0%)
Strand = Plus / Minus
Query: 26 ccaaagcatttt-ggtggaatggcttcatacaactgcagggtgacatagatcatcaatga 84
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 536 ccaaagcatttttggtggaatggcttcatacaactgtagggtgacatagatcatcaatga 477
Query: 85 tgttcatgatcaccataactactggatcttgatctatgtgcaacctatatgcatcagagc 144
||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||
Sbjct: 476 tgttcatgatcaccataactattggatcttgacctatgtgcaacgtatatgcatcagagc 417
Query: 145 atcttcagagagtatagctaactctactcccttgatctcatcccaaagacgaccaactca 204
|||||||||||| || ||||||||| |||||||||||||||| ||||||||| ||||||
Sbjct: 416 atcttcagagagcatcgctaactctgctcccttgatctcatctcaaagacgagaaactca 357
Query: 205 tggttcaatcctgtcctctctgttcacttttccaagaattcttggcagcttctgcagatg 264
|| ||||| |||||||| |||||||||||||||||||||||||||| ||| |||||||
Sbjct: 356 tgtttcaactatgtcctctttgttcacttttccaagaattcttggcagattcagcagatg 297
Query: 265 aaccactagaatctccacctttatctttaggcttcgagaagaatggatcccatttgtgag 324
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||
Sbjct: 296 aaccactagaatctccacctttatctttgggctttgagaagaatggatcccattcatgag 237
Query: 325 gtccaattgcctgctgtccatcgtctaacagactatacttccagctattctcttcgataa 384
||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 236 gtccaattgtccgctgtccatcttctaacagactatacttccagctattctcttcgataa 177
Query: 385 aatctttgtcttcttggcctgcgatgatatctcttctcaactttgtcactttgttaatga 444
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 aatctttatcttcttggcctgcgatgatatctcttctcaactttgtcactttgttaatga 117
Query: 445 tcgcctctatggaaacatcaaatgcatctttcaatgtctccagtttcgatcttggatcgg 504
| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 116 ttgcctctacagaaacatcaaatgcatctttcaaggtctccagtttcgatcttggatcag 57
Query: 505 catatatcacctttggtatcagattgatgacctcctctctcatttgcttgaccaca 560
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 56 catatatcacctttggtattagattgatgacctcctctctcatttgcttgatcaca 1
>gb|CW415985.1|CW415985 fsbb001f116f10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f116f10, DNA
sequence
Length = 584
Score = 694 bits (350), Expect = 0.0
Identities = 437/466 (93%)
Strand = Plus / Minus
Query: 138 tcagagcatcttcagagagtatagctaactctactcccttgatctcatcccaaagacgac 197
||||||||||||||||||| || ||||||||| |||||||||||||||| |||||||||
Sbjct: 584 tcagagcatcttcagagagcatcgctaactctgctcccttgatctcatctcaaagacgag 525
Query: 198 caactcatggttcaatcctgtcctctctgttcacttttccaagaattcttggcagcttct 257
|||||||| ||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct: 524 aaactcatgtttcaactatgtcctctttgttcacttttccaagaattcttggcagattca 465
Query: 258 gcagatgaaccactagaatctccacctttatctttaggcttcgagaagaatggatcccat 317
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 464 gcagatgaaccactagaatctccacctttatctttgggctttgagaagaatggatcccat 405
Query: 318 ttgtgaggtccaattgcctgctgtccatcgtctaacagactatacttccagctattctct 377
| ||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 404 tcatgaggtccaattgtccgctgtccatcttctaacagactatacttccagctattctct 345
Query: 378 tcgataaaatctttgtcttcttggcctgcgatgatatctcttctcaactttgtcactttg 437
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tcgataaaatctttatcttcttggcctgcgatgatatctcttctcaactttgtcactttg 285
Query: 438 ttaatgatcgcctctatggaaacatcaaatgcatctttcaatgtctccagtttcgatctt 497
|||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 284 ttaatgattgcctctacagaaacatcaaatgcatctttcaaggtctccagtttcgatctt 225
Query: 498 ggatcggcatatatcacctttggtatcagattgatgacctcctctctcatttgcttgacc 557
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 224 ggatcagcatatatcacctttggtattagattgatgacctcctctctcatttgcttgatc 165
Query: 558 acatctgggtgaatactctttagcctctcctcaatgctggcatttc 603
||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 164 acatctgggtgaatactctttagtctctcctcaatgctggcatttc 119
>gb|CW103502.1|CW103502 104_472_11011923_116_34430_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11011923, DNA
sequence
Length = 687
Score = 250 bits (126), Expect = 1e-064
Identities = 154/162 (95%), Gaps = 1/162 (0%)
Strand = Plus / Plus
Query: 26 ccaaagcatttt-ggtggaatggcttcatacaactgcagggtgacatagatcatcaatga 84
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 522 ccaaagcatttttggtggaatggcttcatacaactgtagggtgacatagatcatcaatga 581
Query: 85 tgttcatgatcaccataactactggatcttgatctatgtgcaacctatatgcatcagagc 144
||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||
Sbjct: 582 tgttcatgatcaccataactattggatcttgacctatgtgcaacgtatatgcatcagagc 641
Query: 145 atcttcagagagtatagctaactctactcccttgatctcatc 186
|||||||||||| || ||||||||| ||||||||||||||||
Sbjct: 642 atcttcagagagcatcgctaactctgctcccttgatctcatc 683
>gb|CW090428.1|CW090428 104_436_10949276_114_32607_076 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
10949276, DNA sequence
Length = 683
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 tttttccaaagcattttggt 40
||||||||||||||||||||
Sbjct: 35 tttttccaaagcattttggt 16
>gb|CW451002.1|CW451002 fsbb001f189o07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f189o07, DNA
sequence
Length = 699
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 tttttccaaagcattttggt 40
||||||||||||||||||||
Sbjct: 413 tttttccaaagcattttggt 432
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 165,619
Number of Sequences: 832831
Number of extensions: 165619
Number of successful extensions: 43141
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43131
Number of HSP's gapped (non-prelim): 8
length of query: 605
length of database: 491,359,669
effective HSP length: 19
effective length of query: 586
effective length of database: 475,535,880
effective search space: 278664025680
effective search space used: 278664025680
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)