BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067450.2.1
(724 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW324654.1|CW324654 104_819_11477275_148_35912_076 Sorgh... 414 e-114
gb|CW192116.1|CW192116 104_614_11178853_116_36947_057 Sorgh... 412 e-113
gb|CW376017.1|CW376017 fsbb001f053k20k0 Sorghum methylation... 396 e-108
gb|CW223611.1|CW223611 104_659_11203008_148_37191_088 Sorgh... 280 2e-073
gb|CW324653.1|CW324653 104_819_11477275_116_35916_076 Sorgh... 280 2e-073
gb|CW347989.1|CW347989 fsbb001f008c13k0 Sorghum methylation... 280 2e-073
gb|CW209940.1|CW209940 104_640_11189528_116_36996_028 Sorgh... 264 1e-068
gb|CW376016.1|CW376016 fsbb001f053k20f0 Sorghum methylation... 121 9e-026
gb|CN144107.1|CN144107 WOUND1_20_E12.b1_A002 Wounded leaves... 98 1e-018
gb|CN148282.1|CN148282 WOUND1_55_G06.b1_A002 Wounded leaves... 98 1e-018
gb|CN150569.1|CN150569 WOUND1_70_C05.b1_A002 Wounded leaves... 98 1e-018
gb|CN151544.1|CN151544 WOUND1_76_C11.b1_A002 Wounded leaves... 98 1e-018
gb|CX607042.1|CX607042 ANR1_6_H06.b1_A002 Anaerobic roots S... 92 8e-017
gb|CX620993.1|CX620993 GABR1_55_G09.b1_A002 GA- or brassino... 92 8e-017
gb|BG102714.1|BG102714 RHIZ2_36_D11.g1_A003 Rhizome2 (RHIZ2... 90 3e-016
gb|CX606124.1|CX606124 ANR1_1_F10.b1_A002 Anaerobic roots S... 86 5e-015
gb|BE596903.1|BE596903 PI1_60_A01.g1_A002 Pathogen induced ... 84 2e-014
gb|CF429902.1|CF429902 PH1_25_D10.b1_A002 Phosphorous-defic... 84 2e-014
gb|CN129547.1|CN129547 RHOH1_36_B08.b3_A002 Acid- and alkal... 84 2e-014
gb|CX608050.1|CX608050 ANR1_32_G10.b1_A002 Anaerobic roots ... 84 2e-014
gb|BG052711.1|BG052711 RHIZ2_28_G08.g1_A003 Rhizome2 (RHIZ2... 82 8e-014
gb|CN151846.1|CN151846 WOUND1_78_C02.b1_A002 Wounded leaves... 82 8e-014
gb|CB925746.1|CB925746 ABA1_23_E12.b1_A012 Abscisic acid-tr... 80 3e-013
gb|CD235375.1|CD235375 SS1_29_H10.b1_A012 Salt-stressed see... 78 1e-012
gb|CF433158.1|CF433158 NIT1_25_E08.b1_A002 Nitrogen-deficie... 78 1e-012
gb|CN148575.1|CN148575 WOUND1_57_A09.g1_A002 Wounded leaves... 78 1e-012
gb|CF431021.1|CF431021 NIT1_4_H02.b1_A002 Nitrogen-deficien... 76 5e-012
gb|CN135321.1|CN135321 OX1_32_B07.b1_A002 Oxidatively-stres... 76 5e-012
gb|CN151211.1|CN151211 WOUND1_74_C10.b1_A002 Wounded leaves... 76 5e-012
gb|CN149045.1|CN149045 WOUND1_60_H10.b1_A002 Wounded leaves... 74 2e-011
gb|AW923055.1|AW923055 DG1_48_G01.g1_A002 Dark Grown 1 (DG1... 72 8e-011
gb|CD234204.1|CD234204 SS1_26_B02.b1_A012 Salt-stressed see... 72 8e-011
gb|CN141678.1|CN141678 WOUND1_1_E01.b1_A002 Wounded leaves ... 72 8e-011
gb|CN145288.1|CN145288 WOUND1_28_A10.b2_A002 Wounded leaves... 72 8e-011
gb|CN146677.1|CN146677 WOUND1_43_B07.b1_A002 Wounded leaves... 72 8e-011
gb|CN150014.1|CN150014 WOUND1_66_H05.b1_A002 Wounded leaves... 72 8e-011
gb|CX618728.1|CX618728 GABR1_41_G07.b1_A002 GA- or brassino... 72 8e-011
gb|CX622109.1|CX622109 GABR1_62_C09.b2_A002 GA- or brassino... 72 8e-011
gb|CW063049.1|CW063049 104_308_10521687_1_30092 Sorghum met... 70 3e-010
gb|CW152280.1|CW152280 104_553_11144405_116_36323_023 Sorgh... 70 3e-010
gb|CF431162.1|CF431162 NIT1_6_C08.b1_A002 Nitrogen-deficien... 70 3e-010
gb|CF490081.1|CF490081 POL1_62_H01.b1_A002 Pollen Sorghum b... 70 3e-010
gb|CW353559.1|CW353559 fsbb001f016f20k0 Sorghum methylation... 68 1e-009
gb|BG558734.1|BG558734 RHIZ2_59_G10.g1_A003 Rhizome2 (RHIZ2... 68 1e-009
gb|CN124677.1|CN124677 RHOH1_6_F06.b1_A002 Acid- and alkali... 68 1e-009
gb|AI723825.1|AI723825 RHIZ1_12_H04.y1_A001 Rhizome1 (RHIZ1... 66 5e-009
gb|CN150018.1|CN150018 WOUND1_66_H09.b1_A002 Wounded leaves... 66 5e-009
gb|CN150866.1|CN150866 WOUND1_72_A06.b1_A002 Wounded leaves... 64 2e-008
gb|CW125845.1|CW125845 104_506_11112559_116_34722_028 Sorgh... 62 8e-008
gb|CF433215.1|CF433215 NIT1_25_E08.g1_A002 Nitrogen-deficie... 62 8e-008
gb|CN141999.1|CN141999 WOUND1_3_E12.b1_A002 Wounded leaves ... 58 1e-006
gb|CW294913.1|CW294913 104_776_11460652_148_35615_016 Sorgh... 56 5e-006
gb|CD236143.1|CD236143 SS1_32_H03.b1_A012 Salt-stressed see... 56 5e-006
gb|CW392630.1|CW392630 fsbb001f079f09f0 Sorghum methylation... 54 2e-005
gb|CW469992.1|CW469992 fsbb001f222p16f0 Sorghum methylation... 52 7e-005
gb|BF657567.1|BF657567 OV2_23_G08.b1_A002 Ovary 2 (OV2) Sor... 52 7e-005
gb|CF429614.1|CF429614 PH1_23_D07.b1_A002 Phosphorous-defic... 52 7e-005
gb|CN129718.1|CN129718 RHOH1_37_B03.b1_A002 Acid- and alkal... 52 7e-005
gb|CN130050.1|CN130050 RHOH1_39_A12.b1_A002 Acid- and alkal... 52 7e-005
gb|CN135665.1|CN135665 OX1_38_F05.b1_A002 Oxidatively-stres... 52 7e-005
gb|CX606431.1|CX606431 ANR1_3_B02.b1_A002 Anaerobic roots S... 52 7e-005
gb|CX606801.1|CX606801 ANR1_5_B12.b1_A002 Anaerobic roots S... 52 7e-005
gb|CX608043.1|CX608043 ANR1_32_F11.b1_A002 Anaerobic roots ... 52 7e-005
gb|CX610703.1|CX610703 ANR1_20_G07.b1_A002 Anaerobic roots ... 52 7e-005
gb|CX614913.1|CX614913 GABR1_17_C07.b1_A002 GA- or brassino... 52 7e-005
gb|CX616691.1|CX616691 GABR1_29_H04.b1_A002 GA- or brassino... 52 7e-005
gb|CX621118.1|CX621118 GABR1_56_D04.b1_A002 GA- or brassino... 52 7e-005
gb|CL152122.1|CL152122 104_335_10779735_116_31364_135 Sorgh... 50 3e-004
gb|CL152965.1|CL152965 104_337_10780377_116_31368_009 Sorgh... 50 3e-004
gb|CW124854.1|CW124854 104_504_11112012_116_34706_034 Sorgh... 50 3e-004
gb|CW255681.1|CW255681 104_720_11226371_148_35403_042 Sorgh... 50 3e-004
gb|CN150772.1|CN150772 WOUND1_71_H03.b1_A002 Wounded leaves... 50 3e-004
gb|CD232077.1|CD232077 SS1_38_E04.b1_A012 Salt-stressed see... 48 0.001
gb|CF432260.1|CF432260 NIT1_15_D05.b1_A002 Nitrogen-deficie... 48 0.001
gb|CF755720.1|CF755720 DSAF1_1_B02.b1_A011 Drought-stressed... 48 0.001
gb|CF771144.1|CF771144 DSBF1_14_E10.g1_A010 Drought-stresse... 48 0.001
gb|CW245147.1|CW245147 104_706_11220910_148_35077_093 Sorgh... 46 0.004
gb|CW245148.1|CW245148 104_706_11220910_148_37599_093 Sorgh... 46 0.004
gb|AW677325.1|AW677325 DG1_5_C12.g1_A002 Dark Grown 1 (DG1)... 46 0.004
gb|CF432253.1|CF432253 NIT1_15_E06.b1_A002 Nitrogen-deficie... 44 0.018
gb|CN124537.1|CN124537 RHOH1_5_A06.g1_A002 Acid- and alkali... 44 0.018
gb|CL167616.1|CL167616 104_364_10810203_116_31803_267 Sorgh... 42 0.070
gb|CW108984.1|CW108984 104_480_11097815_116_34493_082 Sorgh... 42 0.070
gb|CW332999.1|CW332999 104_830_11481709_116_36036_049 Sorgh... 42 0.070
gb|CW097149.1|CW097149 104_463_11002295_116_34344_094 Sorgh... 40 0.28
gb|CW362491.1|CW362491 fsbb001f033i24k0 Sorghum methylation... 40 0.28
gb|CW364958.1|CW364958 fsbb001f037d22f0 Sorghum methylation... 40 0.28
gb|CW404977.1|CW404977 fsbb001f097f17k0 Sorghum methylation... 40 0.28
gb|CW428221.1|CW428221 fsbb001f140l01f0 Sorghum methylation... 40 0.28
gb|CW792366.1|CW792366 SP__Ba0092A24.f SP__Ba Sorghum propi... 40 0.28
gb|AW677158.1|AW677158 DG1_5_C12.b1_A002 Dark Grown 1 (DG1)... 40 0.28
gb|BG463547.1|BG463547 EM1_49_H04.g1_A002 Embryo 1 (EM1) So... 40 0.28
gb|CN143623.1|CN143623 WOUND1_17_H12.b1_A002 Wounded leaves... 40 0.28
gb|CN148351.1|CN148351 WOUND1_55_G06.g1_A002 Wounded leaves... 40 0.28
gb|CN150641.1|CN150641 WOUND1_70_C05.g1_A002 Wounded leaves... 40 0.28
gb|CN151625.1|CN151625 WOUND1_76_C11.g1_A002 Wounded leaves... 40 0.28
>gb|CW324654.1|CW324654 104_819_11477275_148_35912_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477275, DNA
sequence
Length = 635
Score = 414 bits (209), Expect = e-114
Identities = 281/305 (92%)
Strand = Plus / Plus
Query: 178 atttcaggggtatagctcgatgattgatcgaacacctaaaactggtatgattatgtagtc 237
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 200 atttcaggggtagagctcgatgattgatcgaacacctaaaactggtatgatcttgtagtc 259
Query: 238 actgaaaccagcttcaaagatgatgttcctccattcctgctcatctctctcaaggccgtt 297
||||||||||||||||||||| || ||||||||||| ||||||||||||||| ||| ||
Sbjct: 260 actgaaaccagcttcaaagataattttcctccattcttgctcatctctctcagtgccatt 319
Query: 298 gacgatcataaaaaagagatcagacatgacctgtgtctctttgttcttaaggtttggagg 357
||| |||||||| |||| |||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 320 gacaatcataaagaagatatcagacatgacctgtgtctctctattcttaagatttggagg 379
Query: 358 ccctgcaccaaccacggtatctactattatcaccttgccgcctgcatctcgtggaggtat 417
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 380 ccctgcaccaaccacggtatctactatgatcaccttgccgcctgcatctcgtggtggtat 439
Query: 418 agctttcttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgcatgat 477
|||||||||||||||| |||| || ||||||||||||| ||||| ||| |||||||| ||
Sbjct: 440 agctttcttgcagttccttagtattgtgacacactcagtgtcactccaatcgtgcataat 499
Query: 478 ccact 482
|||||
Sbjct: 500 ccact 504
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 481 cttgaggaagacagcattcgctggcggaatggc 513
|||||||||||| ||||||||||| ||||||||
Sbjct: 603 cttgaggaagactgcattcgctggtggaatggc 635
>gb|CW192116.1|CW192116 104_614_11178853_116_36947_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178853, DNA
sequence
Length = 702
Score = 412 bits (208), Expect = e-113
Identities = 280/304 (92%)
Strand = Plus / Plus
Query: 178 atttcaggggtatagctcgatgattgatcgaacacctaaaactggtatgattatgtagtc 237
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 349 atttcaggggtagagctcgatgattgatcgaacacctaaaactggtatgatcttgtagtc 408
Query: 238 actgaaaccagcttcaaagatgatgttcctccattcctgctcatctctctcaaggccgtt 297
||||||||||||||||||||| || ||||||||||| ||||||||||||||| ||| ||
Sbjct: 409 actgaaaccagcttcaaagataattttcctccattcttgctcatctctctcagtgccatt 468
Query: 298 gacgatcataaaaaagagatcagacatgacctgtgtctctttgttcttaaggtttggagg 357
||| |||||||| |||| |||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 469 gacaatcataaagaagatatcagacatgacctgtgtctctctattcttaagatttggagg 528
Query: 358 ccctgcaccaaccacggtatctactattatcaccttgccgcctgcatctcgtggaggtat 417
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 529 ccctgcaccaaccacggtatctactatgatcaccttgccgcctgcatctcgtggtggtat 588
Query: 418 agctttcttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgcatgat 477
|||||||||||||||| |||| || ||||||||||||| ||||| ||| |||||||| ||
Sbjct: 589 agctttcttgcagttccttagtattgtgacacactcagtgtcactccaatcgtgcataat 648
Query: 478 ccac 481
||||
Sbjct: 649 ccac 652
>gb|CW376017.1|CW376017 fsbb001f053k20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f053k20, DNA
sequence
Length = 686
Score = 396 bits (200), Expect = e-108
Identities = 263/284 (92%)
Strand = Plus / Minus
Query: 178 atttcaggggtatagctcgatgattgatcgaacacctaaaactggtatgattatgtagtc 237
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 305 atttcaggggtagagctcgatgattgatcgaacacctaaaactggtatgatcttgtagtc 246
Query: 238 actgaaaccagcttcaaagatgatgttcctccattcctgctcatctctctcaaggccgtt 297
||||||||||||||||||||| || ||||||||||| ||||||||||||||| ||| ||
Sbjct: 245 actgaaaccagcttcaaagataattttcctccattcttgctcatctctctcagtgccatt 186
Query: 298 gacgatcataaaaaagagatcagacatgacctgtgtctctttgttcttaaggtttggagg 357
||| |||||||| |||| |||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 185 gacaatcataaagaagatatcagacatgacctgtgtctctctattcttaagatttggagg 126
Query: 358 ccctgcaccaaccacggtatctactattatcaccttgccgcctgcatctcgtggaggtat 417
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 125 ccctgcaccaaccacggtatctactatgatcaccttgccgcctgcatctcgtggtggtat 66
Query: 418 agctttcttgcagttctttagaatcgtgacacactcagagtcac 461
|||||||||||||||| |||| || ||||||||||||| |||||
Sbjct: 65 agctttcttgcagttccttagtattgtgacacactcagtgtcac 22
>gb|CW223611.1|CW223611 104_659_11203008_148_37191_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11203008, DNA
sequence
Length = 746
Score = 280 bits (141), Expect = 2e-073
Identities = 221/247 (89%), Gaps = 3/247 (1%)
Strand = Plus / Plus
Query: 481 cttgaggaagacagcattcgctggcggaatggcctcaaacatgtcgccagcaacgaagct 540
|||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct: 64 cttgaggaagactgcattcgctggtggaatggcctcaaacatgtcaccagcaacgaaact 123
Query: 541 gagcccagcgcaagcgggagcggttgcgaccacgtgtgcaaggtccagcacggtgcactg 600
|||||| |||||||| ||||| || ||||| ||||||||||| |||| ||||||||||||
Sbjct: 124 gagcccggcgcaagcaggagcagtggcgacgacgtgtgcaagatccatcacggtgcactg 183
Query: 601 tatggcagggaacgccgcagagatggcctgcgccgccgcgccatgcccgccgccaacgtc 660
|||| ||||||||||| | |||||||||||||||||||||||||| || ||||| |||||
Sbjct: 184 tatgccagggaacgccactgagatggcctgcgccgccgcgccatggcccccgccgacgtc 243
Query: 661 gaccagggagcgtatcccctgaaacacgtcg---ccgcactccctgacggcgatgtccat 717
||||||||||| |||||||| || ||| || ||||||||||||| ||||||||||||
Sbjct: 244 gaccagggagctgatcccctggaagacgacgccaccgcactccctgatggcgatgtccat 303
Query: 718 gaggaag 724
|||||||
Sbjct: 304 gaggaag 310
>gb|CW324653.1|CW324653 104_819_11477275_116_35916_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477275, DNA
sequence
Length = 597
Score = 280 bits (141), Expect = 2e-073
Identities = 221/247 (89%), Gaps = 3/247 (1%)
Strand = Plus / Minus
Query: 481 cttgaggaagacagcattcgctggcggaatggcctcaaacatgtcgccagcaacgaagct 540
|||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct: 378 cttgaggaagactgcattcgctggtggaatggcctcaaacatgtcaccagcaacgaaact 319
Query: 541 gagcccagcgcaagcgggagcggttgcgaccacgtgtgcaaggtccagcacggtgcactg 600
|||||| |||||||| ||||| || ||||| ||||||||||| |||| ||||||||||||
Sbjct: 318 gagcccggcgcaagcaggagcagtggcgacgacgtgtgcaagatccatcacggtgcactg 259
Query: 601 tatggcagggaacgccgcagagatggcctgcgccgccgcgccatgcccgccgccaacgtc 660
|||| ||||||||||| | |||||||||||||||||||||||||| || ||||| |||||
Sbjct: 258 tatgccagggaacgccactgagatggcctgcgccgccgcgccatggcccccgccgacgtc 199
Query: 661 gaccagggagcgtatcccctgaaacacgtcg---ccgcactccctgacggcgatgtccat 717
||||||||||| |||||||| || ||| || ||||||||||||| ||||||||||||
Sbjct: 198 gaccagggagctgatcccctggaagacgacgccaccgcactccctgatggcgatgtccat 139
Query: 718 gaggaag 724
|||||||
Sbjct: 138 gaggaag 132
Score = 168 bits (85), Expect = 4e-040
Identities = 112/121 (92%)
Strand = Plus / Minus
Query: 362 gcaccaaccacggtatctactattatcaccttgccgcctgcatctcgtggaggtatagct 421
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 597 gcaccaaccacggtatctactatgatcaccttgccgcctgcatctcgtggtggtatagct 538
Query: 422 ttcttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgcatgatccac 481
|||||||||||| |||| || ||||||||||||| ||||| ||| |||||||| ||||||
Sbjct: 537 ttcttgcagttccttagtattgtgacacactcagtgtcactccaatcgtgcataatccac 478
Query: 482 t 482
|
Sbjct: 477 t 477
>gb|CW347989.1|CW347989 fsbb001f008c13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f008c13, DNA
sequence
Length = 560
Score = 280 bits (141), Expect = 2e-073
Identities = 221/247 (89%), Gaps = 3/247 (1%)
Strand = Plus / Plus
Query: 481 cttgaggaagacagcattcgctggcggaatggcctcaaacatgtcgccagcaacgaagct 540
|||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct: 19 cttgaggaagactgcattcgctggtggaatggcctcaaacatgtcaccagcaacgaaact 78
Query: 541 gagcccagcgcaagcgggagcggttgcgaccacgtgtgcaaggtccagcacggtgcactg 600
|||||| |||||||| ||||| || ||||| ||||||||||| |||| ||||||||||||
Sbjct: 79 gagcccggcgcaagcaggagcagtggcgacgacgtgtgcaagatccatcacggtgcactg 138
Query: 601 tatggcagggaacgccgcagagatggcctgcgccgccgcgccatgcccgccgccaacgtc 660
|||| ||||||||||| | |||||||||||||||||||||||||| || ||||| |||||
Sbjct: 139 tatgccagggaacgccactgagatggcctgcgccgccgcgccatggcccccgccgacgtc 198
Query: 661 gaccagggagcgtatcccctgaaacacgtcg---ccgcactccctgacggcgatgtccat 717
||||||||||| |||||||| || ||| || ||||||||||||| ||||||||||||
Sbjct: 199 gaccagggagctgatcccctggaagacgacgccaccgcactccctgatggcgatgtccat 258
Query: 718 gaggaag 724
|||||||
Sbjct: 259 gaggaag 265
>gb|CW209940.1|CW209940 104_640_11189528_116_36996_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189528, DNA
sequence
Length = 584
Score = 264 bits (133), Expect = 1e-068
Identities = 213/239 (89%), Gaps = 3/239 (1%)
Strand = Plus / Plus
Query: 489 agacagcattcgctggcggaatggcctcaaacatgtcgccagcaacgaagctgagcccag 548
|||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |
Sbjct: 1 agactgcattcgctggtggaatggcctcaaacatgtcaccagcaacgaaactgagcccgg 60
Query: 549 cgcaagcgggagcggttgcgaccacgtgtgcaaggtccagcacggtgcactgtatggcag 608
||||||| ||||| || ||||| ||||||||||| |||| |||||||||||||||| |||
Sbjct: 61 cgcaagcaggagcagtggcgacgacgtgtgcaagatccatcacggtgcactgtatgccag 120
Query: 609 ggaacgccgcagagatggcctgcgccgccgcgccatgcccgccgccaacgtcgaccaggg 668
|||||||| | |||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct: 121 ggaacgccactgagatggcctgcgccgccgcgccatggcccccgccgacgtcgaccaggg 180
Query: 669 agcgtatcccctgaaacacgtcg---ccgcactccctgacggcgatgtccatgaggaag 724
||| |||||||| || ||| || ||||||||||||| |||||||||||||||||||
Sbjct: 181 agctgatcccctggaagacgacgccaccgcactccctgatggcgatgtccatgaggaag 239
>gb|CW376016.1|CW376016 fsbb001f053k20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f053k20, DNA
sequence
Length = 593
Score = 121 bits (61), Expect = 9e-026
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 178 atttcaggggtatagctcgatgattgatcgaacacctaaaactggtatgattatgtagtc 237
|||||||||||| |||||||||||||||||||||||||||||||||||||| || || |
Sbjct: 507 atttcaggggtagagctcgatgattgatcgaacacctaaaactggtatgatcttggagcc 566
Query: 238 actgaaaccagcttcaaagat 258
|||||||||||||||||||||
Sbjct: 567 actgaaaccagcttcaaagat 587
>gb|CN144107.1|CN144107 WOUND1_20_E12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_20_E12_A002 3', mRNA sequence
Length = 473
Score = 97.6 bits (49), Expect = 1e-018
Identities = 130/157 (82%)
Strand = Plus / Minus
Query: 197 atgattgatcgaacacctaaaactggtatgattatgtagtcactgaaaccagcttcaaag 256
||||| ||||||||||| | ||| ||||||||| |||| || || || || |||||||||
Sbjct: 410 atgatggatcgaacaccaagaacaggtatgattttgtaatccctaaatccggcttcaaag 351
Query: 257 atgatgttcctccattcctgctcatctctctcaaggccgttgacgatcataaaaaagaga 316
||||| ||| ||||||| ||||| |||| ||| | ||||||||| | ||| | ||||||
Sbjct: 350 atgatcttcttccattcttgctcgtctcgctcgacgccgttgacaaacatgatgaagaga 291
Query: 317 tcagacatgacctgtgtctctttgttcttaaggtttg 353
||| ||| |||||| |||||||||| ||||| |||||
Sbjct: 290 tcaaacaagacctgagtctctttgtgcttaatgtttg 254
Score = 63.9 bits (32), Expect = 2e-008
Identities = 122/152 (80%)
Strand = Plus / Minus
Query: 383 attatcaccttgccgcctgcatctcgtggaggtatagctttcttgcagttctttagaatc 442
||||||||||| || |||||||||| | ||| ||||| ||||| || ||||| || |||
Sbjct: 224 attatcacctttcctcctgcatctctagaagggatagcattcttacaattcttcagtatc 165
Query: 443 gtgacacactcagagtcaccccagtcgtgcatgatccacttgaggaagacagcattcgct 502
||| ||| |||| || |||||||| |||| | |||||| |||||||| || || ||
Sbjct: 164 ttgatacaatcagcatcgccccagtcatgcaaaacccacttaaggaagacggcgtttgcc 105
Query: 503 ggcggaatggcctcaaacatgtcgccagcaac 534
|| |||||| |||||||||||| ||||||||
Sbjct: 104 ggtggaatgctctcaaacatgtcaccagcaac 73
>gb|CN148282.1|CN148282 WOUND1_55_G06.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_55_G06_A002 3', mRNA sequence
Length = 741
Score = 97.6 bits (49), Expect = 1e-018
Identities = 130/157 (82%)
Strand = Plus / Minus
Query: 197 atgattgatcgaacacctaaaactggtatgattatgtagtcactgaaaccagcttcaaag 256
||||| ||||||||||| | ||| ||||||||| |||| || || || || |||||||||
Sbjct: 680 atgatggatcgaacaccaagaacaggtatgattttgtaatcgctaaatccggcttcaaag 621
Query: 257 atgatgttcctccattcctgctcatctctctcaaggccgttgacgatcataaaaaagaga 316
||||| ||| ||||||| ||||| |||| ||| | ||||||||| | ||| | ||||||
Sbjct: 620 atgatcttcttccattcttgctcgtctcgctcgacgccgttgacaaacatgatgaagaga 561
Query: 317 tcagacatgacctgtgtctctttgttcttaaggtttg 353
||| ||| |||||| |||||||||| ||||| |||||
Sbjct: 560 tcaaacaagacctgagtctctttgtgcttaatgtttg 524
Score = 71.9 bits (36), Expect = 8e-011
Identities = 123/152 (80%)
Strand = Plus / Minus
Query: 383 attatcaccttgccgcctgcatctcgtggaggtatagctttcttgcagttctttagaatc 442
||||||||||| || |||||||||| | ||||||||| ||||| || ||||| || |||
Sbjct: 494 attatcacctttcctcctgcatctctagaaggtatagcattcttacaattcttcagtatc 435
Query: 443 gtgacacactcagagtcaccccagtcgtgcatgatccacttgaggaagacagcattcgct 502
||| ||| |||| || |||||||| |||| | |||||| |||||||| || || ||
Sbjct: 434 ttgatacaatcagcatcgccccagtcatgcaaaacccacttaaggaagacggcgtttgcc 375
Query: 503 ggcggaatggcctcaaacatgtcgccagcaac 534
|| |||||| |||||||||||| ||||||||
Sbjct: 374 ggtggaatgctctcaaacatgtcaccagcaac 343
Score = 40.1 bits (20), Expect = 0.28
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 689 tcgccgcactccctgacggcgatgtccatgaggaag 724
|||||||| ||| ||||| |||||||||||| ||||
Sbjct: 188 tcgccgcagtccttgacgacgatgtccatgatgaag 153
>gb|CN150569.1|CN150569 WOUND1_70_C05.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_70_C05_A002 3', mRNA sequence
Length = 749
Score = 97.6 bits (49), Expect = 1e-018
Identities = 130/157 (82%)
Strand = Plus / Minus
Query: 197 atgattgatcgaacacctaaaactggtatgattatgtagtcactgaaaccagcttcaaag 256
||||| ||||||||||| | ||| ||||||||| |||| || || || || |||||||||
Sbjct: 586 atgatggatcgaacaccaagaacaggtatgattttgtaatcgctaaatccggcttcaaag 527
Query: 257 atgatgttcctccattcctgctcatctctctcaaggccgttgacgatcataaaaaagaga 316
||||| ||| ||||||| ||||| |||| ||| | ||||||||| | ||| | ||||||
Sbjct: 526 atgatcttcttccattcttgctcgtctcgctcgacgccgttgacaaacatgatgaagaga 467
Query: 317 tcagacatgacctgtgtctctttgttcttaaggtttg 353
||| ||| |||||| |||||||||| ||||| |||||
Sbjct: 466 tcaaacaagacctgagtctctttgtgcttaatgtttg 430
Score = 63.9 bits (32), Expect = 2e-008
Identities = 122/152 (80%)
Strand = Plus / Minus
Query: 383 attatcaccttgccgcctgcatctcgtggaggtatagctttcttgcagttctttagaatc 442
||||||||||| || |||||||||| | ||||||||| ||||| || ||||| || |||
Sbjct: 400 attatcacctttcctcctgcatctctagaaggtatagcattcttacaattcttcagtatc 341
Query: 443 gtgacacactcagagtcaccccagtcgtgcatgatccacttgaggaagacagcattcgct 502
||| ||| |||| | |||||||| |||| | |||||| |||||||| || || ||
Sbjct: 340 ttgatacaatcagcaccgccccagtcatgcaaaacccacttaaggaagacggcgtttgcc 281
Query: 503 ggcggaatggcctcaaacatgtcgccagcaac 534
|| |||||| |||||||||||| ||||||||
Sbjct: 280 ggtggaatgctctcaaacatgtcaccagcaac 249
>gb|CN151544.1|CN151544 WOUND1_76_C11.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_76_C11_A002 3', mRNA sequence
Length = 620
Score = 97.6 bits (49), Expect = 1e-018
Identities = 130/157 (82%)
Strand = Plus / Minus
Query: 197 atgattgatcgaacacctaaaactggtatgattatgtagtcactgaaaccagcttcaaag 256
||||| ||||||||||| | ||| ||||||||| |||| || || || || |||||||||
Sbjct: 455 atgatggatcgaacaccaagaacaggtatgattttgtaatcgctaaatccggcttcaaag 396
Query: 257 atgatgttcctccattcctgctcatctctctcaaggccgttgacgatcataaaaaagaga 316
||||| ||| ||||||| ||||| |||| ||| | ||||||||| | ||| | ||||||
Sbjct: 395 atgatcttcttccattcttgctcgtctcgctcgacgccgttgacaaacatgatgaagaga 336
Query: 317 tcagacatgacctgtgtctctttgttcttaaggtttg 353
||| ||| |||||| |||||||||| ||||| |||||
Sbjct: 335 tcaaacaagacctgagtctctttgtgcttaatgtttg 299
Score = 71.9 bits (36), Expect = 8e-011
Identities = 123/152 (80%)
Strand = Plus / Minus
Query: 383 attatcaccttgccgcctgcatctcgtggaggtatagctttcttgcagttctttagaatc 442
||||||||||| || |||||||||| | ||||||||| ||||| || ||||| || |||
Sbjct: 269 attatcacctttcctcctgcatctctagaaggtatagcattcttacaattcttcagtatc 210
Query: 443 gtgacacactcagagtcaccccagtcgtgcatgatccacttgaggaagacagcattcgct 502
||| ||| |||| || |||||||| |||| | |||||| |||||||| || || ||
Sbjct: 209 ttgatacaatcagcatcgccccagtcatgcaaaacccacttaaggaagacggcgtttgcc 150
Query: 503 ggcggaatggcctcaaacatgtcgccagcaac 534
|| |||||| |||||||||||| ||||||||
Sbjct: 149 ggtggaatgctctcaaacatgtcaccagcaac 118
>gb|CX607042.1|CX607042 ANR1_6_H06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_H06_A002 3', mRNA sequence
Length = 733
Score = 91.7 bits (46), Expect = 8e-017
Identities = 139/170 (81%)
Strand = Plus / Minus
Query: 365 ccaaccacggtatctactattatcaccttgccgcctgcatctcgtggaggtatagctttc 424
|||||||| |||||| |||||| | ||| || |||||||||||||||||||| |||||
Sbjct: 339 ccaaccaccatatctattattattatctttcctcctgcatctcgtggaggtattgctttt 280
Query: 425 ttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgcatgatccacttg 484
||||||||||| || ||| ||||||||||| || ||||||||||| | | |||||
Sbjct: 279 ttgcagttcttcagtatcttgacacactcatcatcgttccagtcgtgcagaaccaacttg 220
Query: 485 aggaagacagcattcgctggcggaatggcctcaaacatgtcgccagcaac 534
||||| ||||| || || |||||||| | ||||||||||||||||||
Sbjct: 219 aggaacacagcgtttgccggcggaatactttgaaacatgtcgccagcaac 170
>gb|CX620993.1|CX620993 GABR1_55_G09.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_55_G09_A002 3', mRNA sequence
Length = 667
Score = 91.7 bits (46), Expect = 8e-017
Identities = 139/170 (81%)
Strand = Plus / Minus
Query: 365 ccaaccacggtatctactattatcaccttgccgcctgcatctcgtggaggtatagctttc 424
|||||||| |||||| |||||| | ||| || |||||||||||||||||||| |||||
Sbjct: 251 ccaaccaccatatctattattattatctttcctcctgcatctcgtggaggtattgctttt 192
Query: 425 ttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgcatgatccacttg 484
||||||||||| || ||| ||||||||||| || ||||||||||| | | |||||
Sbjct: 191 ttgcagttcttcagtatcttgacacactcatcatcgttccagtcgtgcagaaccaacttg 132
Query: 485 aggaagacagcattcgctggcggaatggcctcaaacatgtcgccagcaac 534
||||| ||||| || || |||||||| | ||||||||||||||||||
Sbjct: 131 aggaacacagcgtttgccggcggaatactttgaaacatgtcgccagcaac 82
>gb|BG102714.1|BG102714 RHIZ2_36_D11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 632
Score = 89.7 bits (45), Expect = 3e-016
Identities = 129/157 (82%)
Strand = Plus / Minus
Query: 197 atgattgatcgaacacctaaaactggtatgattatgtagtcactgaaaccagcttcaaag 256
||||| ||||||||||| | ||| ||||||||| |||| || || || || |||||||||
Sbjct: 541 atgatggatcgaacaccaagaacaggtatgattttgtaatcgctaaatccggcttcaaag 482
Query: 257 atgatgttcctccattcctgctcatctctctcaaggccgttgacgatcataaaaaagaga 316
||||| ||| ||||||| ||||| |||| ||| | ||| ||||| | ||| | ||||||
Sbjct: 481 atgatcttcttccattcttgctcgtctcgctcgacgccattgacaaacatgatgaagaga 422
Query: 317 tcagacatgacctgtgtctctttgttcttaaggtttg 353
||| ||| |||||| |||||||||| ||||| |||||
Sbjct: 421 tcaaacaagacctgagtctctttgtgcttaatgtttg 385
Score = 79.8 bits (40), Expect = 3e-013
Identities = 124/152 (81%)
Strand = Plus / Minus
Query: 383 attatcaccttgccgcctgcatctcgtggaggtatagctttcttgcagttctttagaatc 442
||||||||||| || |||||||| | ||||||||||||||||| || ||||| || |||
Sbjct: 355 attatcacctttcctcctgcatccctaggaggtatagctttcttacaattcttcagtatc 296
Query: 443 gtgacacactcagagtcaccccagtcgtgcatgatccacttgaggaagacagcattcgct 502
||| ||| |||| || |||||||| |||| | |||||| |||||||| |||| ||
Sbjct: 295 ttgatacaatcagcatcgccccagtcatgcaaaacccacttaaggaagacggcatctgcc 236
Query: 503 ggcggaatggcctcaaacatgtcgccagcaac 534
|| |||||| |||||||||||| ||||||||
Sbjct: 235 ggtggaatgctctcaaacatgtcaccagcaac 204
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 689 tcgccgcactccctgacggcgatgtccatgaggaag 724
|||||||||||| ||||| |||||||||||| ||||
Sbjct: 49 tcgccgcactccttgacgacgatgtccatgatgaag 14
>gb|CX606124.1|CX606124 ANR1_1_F10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_1_F10_A002 3', mRNA sequence
Length = 675
Score = 85.7 bits (43), Expect = 5e-015
Identities = 109/131 (83%)
Strand = Plus / Minus
Query: 365 ccaaccacggtatctactattatcaccttgccgcctgcatctcgtggaggtatagctttc 424
|||||||| |||||| ||||| ||||| || ||| |||||||||||||||||||||
Sbjct: 192 ccaaccaccatatctatgattattacctttcctcctacatctcgtggaggtatagcttgt 133
Query: 425 ttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgcatgatccacttg 484
|| ||||||||||| ||| ||||||| ||| ||| ||||||||||| |||||||||
Sbjct: 132 ttacagttctttagtatcttgacacagtcatcatcattccagtcgtgcagaatccacttg 73
Query: 485 aggaagacagc 495
||||| |||||
Sbjct: 72 aggaacacagc 62
>gb|BE596903.1|BE596903 PI1_60_A01.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 676
Score = 83.8 bits (42), Expect = 2e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 365 ccaaccacggtatctactattatcaccttgccgcctgcatctcgtggaggtatagctttc 424
|||||||| |||||| |||||| | ||| || || ||||||||||||||||| |||||
Sbjct: 227 ccaaccaccatatctattattattatcttccctcccgcatctcgtggaggtattgctttt 168
Query: 425 ttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgcatgatccacttg 484
||||||||||| | ||| ||||||||||| ||| ||||||||| | |||||||||
Sbjct: 167 ttgcagttcttcaatatcttgacacactcatcatcattccagtcgtgaagaatccacttg 108
Query: 485 aggaagacagcattcgctggcggaat 510
||||| ||||| ||||| || |||||
Sbjct: 107 aggaacacagcgttcgccggtggaat 82
>gb|CF429902.1|CF429902 PH1_25_D10.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_D10_A002 3', mRNA sequence
Length = 545
Score = 83.8 bits (42), Expect = 2e-014
Identities = 138/170 (81%)
Strand = Plus / Minus
Query: 365 ccaaccacggtatctactattatcaccttgccgcctgcatctcgtggaggtatagctttc 424
|||||||| |||||| |||||| | ||| || ||||||||||| |||||||| |||||
Sbjct: 204 ccaaccaccatatctattattattatctttccccctgcatctcggggaggtattgctttt 145
Query: 425 ttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgcatgatccacttg 484
||||||||||| || ||| ||||||||||| || ||||||||||| | | |||||
Sbjct: 144 ttgcagttcttcagtatcttgacacactcatcatcgttccagtcgtgcagaaccaacttg 85
Query: 485 aggaagacagcattcgctggcggaatggcctcaaacatgtcgccagcaac 534
||||| ||||| || || |||||||| | ||||||||||||||||||
Sbjct: 84 aggaacacagcgtttgccggcggaatactttgaaacatgtcgccagcaac 35
>gb|CN129547.1|CN129547 RHOH1_36_B08.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_B08_A002 3', mRNA sequence
Length = 793
Score = 83.8 bits (42), Expect = 2e-014
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 365 ccaaccacggtatctactattatcaccttgccgcctgcatctcgtggaggtatagctttc 424
|||||||| |||||| |||||| | ||| || |||||||||||||||||||| |||||
Sbjct: 452 ccaaccaccatatctattattattatctttcctcctgcatctcgtggaggtattgctttt 393
Query: 425 ttgcagttctttagaatcgtgacacactca 454
||||||||||| || ||| |||||||||||
Sbjct: 392 ttgcagttcttcagtatcttgacacactca 363
>gb|CX608050.1|CX608050 ANR1_32_G10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_32_G10_A002 3', mRNA sequence
Length = 617
Score = 83.8 bits (42), Expect = 2e-014
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 365 ccaaccacggtatctactattatcaccttgccgcctgcatctcgtggaggtatagctttc 424
|||||||| |||||| |||||| | ||| || |||||||||||||||||||| |||||
Sbjct: 202 ccaaccaccatatctattattattatctttccccctgcatctcgtggaggtattgctttt 143
Query: 425 ttgcagttctttagaatcgtgacacactca 454
||||||||||| || ||| |||||||||||
Sbjct: 142 ttgcagttcttcagtatcttgacacactca 113
>gb|BG052711.1|BG052711 RHIZ2_28_G08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 469
Score = 81.8 bits (41), Expect = 8e-014
Identities = 128/157 (81%)
Strand = Plus / Minus
Query: 197 atgattgatcgaacacctaaaactggtatgattatgtagtcactgaaaccagcttcaaag 256
||||| ||||||||||| | ||| ||||||||| |||| || || || || |||||||||
Sbjct: 352 atgatggatcgaacaccaagaacaggtatgattttgtaatcgctaaatccggcttcaaag 293
Query: 257 atgatgttcctccattcctgctcatctctctcaaggccgttgacgatcataaaaaagaga 316
||||| ||| ||||||| ||||| | || ||| | ||| ||||| | ||| | ||||||
Sbjct: 292 atgatcttcttccattcttgctcgtatcgctcgacgccattgacaaacatgatgaagaga 233
Query: 317 tcagacatgacctgtgtctctttgttcttaaggtttg 353
||| ||| |||||| |||||||||| ||||| |||||
Sbjct: 232 tcaaacaagacctgggtctctttgtgcttaatgtttg 196
Score = 48.1 bits (24), Expect = 0.001
Identities = 120/152 (78%)
Strand = Plus / Minus
Query: 383 attatcaccttgccgcctgcatctcgtggaggtatagctttcttgcagttctttagaatc 442
||||||||||| | |||||||| | ||||| ||||||||||| || || || || |||
Sbjct: 166 attatcaccttttctcctgcatccctaggagggatagctttcttacaattgttcagtatc 107
Query: 443 gtgacacactcagagtcaccccagtcgtgcatgatccacttgaggaagacagcattcgct 502
||| ||| |||| || |||||||| |||| | |||||| ||||| || |||| ||
Sbjct: 106 ttgatacaatcagcatcgccccagtcatgcaaaacccacttaaggaaaacggcatctgcc 47
Query: 503 ggcggaatggcctcaaacatgtcgccagcaac 534
|| |||||| |||||||||||| ||||||||
Sbjct: 46 gggggaatgctctcaaacatgtcaccagcaac 15
>gb|CN151846.1|CN151846 WOUND1_78_C02.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_78_C02_A002 3', mRNA sequence
Length = 363
Score = 81.8 bits (41), Expect = 8e-014
Identities = 128/157 (81%)
Strand = Plus / Minus
Query: 197 atgattgatcgaacacctaaaactggtatgattatgtagtcactgaaaccagcttcaaag 256
||||| ||||||||||| | ||| ||||||||| |||| || || || || ||||| |||
Sbjct: 205 atgatggatcgaacaccaagaacaggtatgattttgtaatcgctaaatccggcttccaag 146
Query: 257 atgatgttcctccattcctgctcatctctctcaaggccgttgacgatcataaaaaagaga 316
||||| ||| ||||||| ||||| |||| ||| | ||||||||| | ||| | || |||
Sbjct: 145 atgatcttcttccattcttgctcgtctcgctcgacgccgttgacaaacatgatgaaaaga 86
Query: 317 tcagacatgacctgtgtctctttgttcttaaggtttg 353
||| ||| |||||| |||||||||| ||||| |||||
Sbjct: 85 tcaaacaagacctgagtctctttgtgcttaaagtttg 49
>gb|CB925746.1|CB925746 ABA1_23_E12.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_23_E12_A012 3', mRNA sequence
Length = 534
Score = 79.8 bits (40), Expect = 3e-013
Identities = 208/264 (78%)
Strand = Plus / Minus
Query: 191 agctcgatgattgatcgaacacctaaaactggtatgattatgtagtcactgaaaccagct 250
|||||||| || || |||||||| | || |||||||||| ||||||| |||| || ||
Sbjct: 269 agctcgataatagaacgaacaccaagaagtggtatgattttgtagtccttgaatcctgcc 210
Query: 251 tcaaagatgatgttcctccattcctgctcatctctctcaaggccgttgacgatcataaaa 310
|| |||| ||||||| |||| || | |||||||| ||| | || ||||| |||| |
Sbjct: 209 tcgaagaagatgttcttccactcattctcatctcgctcgaccccattgacattcatcatc 150
Query: 311 aagagatcagacatgacctgtgtctctttgttcttaaggtttggaggccctgcaccaacc 370
| ||| ||| ||| |||||||||||| ||| || ||||||| ||| | | ||||||
Sbjct: 149 atgaggtcaaacaaaacctgtgtctctatgtgtttgaggtttgacggctcagatccaacc 90
Query: 371 acggtatctactattatcaccttgccgcctgcatctcgtggaggtatagctttcttgcag 430
|| |||||| |||||| | ||| || |||||||||||||||||||| |||| ||||||
Sbjct: 89 accatatctattattattatcttccctcctgcatctcgtggaggtattgcttgtttgcag 30
Query: 431 ttctttagaatcgtgacacactca 454
||||| || ||| |||||||||||
Sbjct: 29 ttcttcagtatcttgacacactca 6
>gb|CD235375.1|CD235375 SS1_29_H10.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_29_H10_A012 3', mRNA sequence
Length = 652
Score = 77.8 bits (39), Expect = 1e-012
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 419 gctttcttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgcatgatc 478
||||||||||||||||| | ||| ||||||| || | ||||||||||| |||| |||
Sbjct: 309 gctttcttgcagttcttcaatatcttgacacattcggcatcaccccagtcatgcagaatc 250
Query: 479 cacttgaggaagacagcattcgctggcggaatggcctcaaacatgtc 525
|||||||||||||| || || |||| ||||||| ||||||||||||
Sbjct: 249 cacttgaggaagaccgcgtttgctgacggaatgctctcaaacatgtc 203
Score = 61.9 bits (31), Expect = 8e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 645 gcccgccgccaacgtcgaccagggagcgtatcccctgaaacacgtcgccgcactccctga 704
|||||||| | |||||||| ||||||| ||||||||||| ||||||| ||||||| |||
Sbjct: 83 gcccgccggcgacgtcgacaagggagctaatcccctgaaagacgtcgctgcactccttga 24
Query: 705 cggcgatgtccatga 719
| ||| ||||||||
Sbjct: 23 ccacgacgtccatga 9
>gb|CF433158.1|CF433158 NIT1_25_E08.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_25_E08_A002 3', mRNA sequence
Length = 626
Score = 77.8 bits (39), Expect = 1e-012
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 419 gctttcttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgcatgatc 478
||||||||||||||||| | ||| ||||||| || | ||||||||||| |||| |||
Sbjct: 222 gctttcttgcagttcttcaatatcttgacacattcggcatcaccccagtcatgcagaatc 163
Query: 479 cacttgaggaagacagcattcgctggcggaatggcctcaaacatgtc 525
|||||||||||||| || || |||| ||||||| ||||||||||||
Sbjct: 162 cacttgaggaagaccgcgtttgctgacggaatgctctcaaacatgtc 116
Score = 40.1 bits (20), Expect = 0.28
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 193 ctcgatgattgatcgaacacctaaaactggtatgat 228
|||||| || ||||||||||||| ||| ||||||||
Sbjct: 442 ctcgataatcgatcgaacacctagaacaggtatgat 407
>gb|CN148575.1|CN148575 WOUND1_57_A09.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_57_A09_A002 5', mRNA sequence
Length = 863
Score = 77.8 bits (39), Expect = 1e-012
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 419 gctttcttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgcatgatc 478
||||||||||||||||| | ||| ||||||| || | ||||||||||| |||| |||
Sbjct: 858 gctttcttgcagttcttcaatatcttgacacattcggcatcaccccagtcatgcagaatc 799
Query: 479 cacttgaggaagacagcattcgctggcggaatggcctcaaacatgtc 525
|||||||||||||| || || |||| ||||||| ||||||||||||
Sbjct: 798 cacttgaggaagaccgcgtttgctgacggaatgctctcaaacatgtc 752
Score = 61.9 bits (31), Expect = 8e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 645 gcccgccgccaacgtcgaccagggagcgtatcccctgaaacacgtcgccgcactccctga 704
|||||||| | |||||||| ||||||| ||||||||||| ||||||| ||||||| |||
Sbjct: 632 gcccgccggcgacgtcgacaagggagctaatcccctgaaagacgtcgctgcactccttga 573
Query: 705 cggcgatgtccatga 719
| ||| ||||||||
Sbjct: 572 ccacgacgtccatga 558
>gb|CF431021.1|CF431021 NIT1_4_H02.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_4_H02_A002 3', mRNA sequence
Length = 651
Score = 75.8 bits (38), Expect = 5e-012
Identities = 77/90 (85%)
Strand = Plus / Minus
Query: 365 ccaaccacggtatctactattatcaccttgccgcctgcatctcgtggaggtatagctttc 424
|||||||| |||||| |||||| | ||| || |||||||||||||||||||| ||||
Sbjct: 204 ccaaccaccatatctattattattatcttccctcctgcatctcgtggaggtattgcttgt 145
Query: 425 ttgcagttctttagaatcgtgacacactca 454
||||||||||| || ||| |||||||||||
Sbjct: 144 ttgcagttcttcagtatcttgacacactca 115
>gb|CN135321.1|CN135321 OX1_32_B07.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_32_B07_A002 3', mRNA sequence
Length = 714
Score = 75.8 bits (38), Expect = 5e-012
Identities = 77/90 (85%)
Strand = Plus / Minus
Query: 365 ccaaccacggtatctactattatcaccttgccgcctgcatctcgtggaggtatagctttc 424
|||||||| |||||| |||||| | ||| || |||||||||||||||||||| ||||
Sbjct: 267 ccaaccaccatatctattattattatcttccctcctgcatctcgtggaggtattgcttgt 208
Query: 425 ttgcagttctttagaatcgtgacacactca 454
||||||||||| || ||| |||||||||||
Sbjct: 207 ttgcagttcttcagtatcttgacacactca 178
>gb|CN151211.1|CN151211 WOUND1_74_C10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_74_C10_A002 3', mRNA sequence
Length = 780
Score = 75.8 bits (38), Expect = 5e-012
Identities = 77/90 (85%)
Strand = Plus / Minus
Query: 365 ccaaccacggtatctactattatcaccttgccgcctgcatctcgtggaggtatagctttc 424
|||||||| |||||| |||||| | ||| || |||||||||||||||||||| ||||
Sbjct: 343 ccaaccaccatatctattattattatcttccctcctgcatctcgtggaggtattgcttgt 284
Query: 425 ttgcagttctttagaatcgtgacacactca 454
||||||||||| || ||| |||||||||||
Sbjct: 283 ttgcagttcttcagtatcttgacacactca 254
>gb|CN149045.1|CN149045 WOUND1_60_H10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_60_H10_A002 3', mRNA sequence
Length = 681
Score = 73.8 bits (37), Expect = 2e-011
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 413 ggtatagctttcttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgc 472
|||||||| |||||||||||||| | ||| ||||||| |||| ||||||||| || |||
Sbjct: 235 ggtatagccttcttgcagttcttcaatatcttgacacattcagcgtcaccccaatcatgc 176
Query: 473 atgatccacttgaggaagacagcattcgctggcggaatggcctcaaacatgtcgccagca 532
| | |||||||||||||||| |||| || | |||| | ||||||||||||||| |||
Sbjct: 175 agaacccacttgaggaagacaacatttgccgatggaacgctctcaaacatgtcgccggca 116
Query: 533 a 533
|
Sbjct: 115 a 115
>gb|AW923055.1|AW923055 DG1_48_G01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 690
Score = 71.9 bits (36), Expect = 8e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 413 ggtatagctttcttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgc 472
|||||||| |||||||||||||| | ||| ||||||| |||| ||||||||| || |||
Sbjct: 222 ggtatagccttcttgcagttcttcaatatcttgacacattcagcgtcaccccaatcatgc 163
Query: 473 atgatccacttgaggaagacagcattcgctggcggaatggcctcaaacatgtcgcc 528
| | |||||||||||||||| |||| || | |||| | |||||||||||||||
Sbjct: 162 agaacccacttgaggaagacaacatttgccgatggaacgctctcaaacatgtcgcc 107
>gb|CD234204.1|CD234204 SS1_26_B02.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_26_B02_A012 3', mRNA sequence
Length = 618
Score = 71.9 bits (36), Expect = 8e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 413 ggtatagctttcttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgc 472
|||||||| |||||||||||||| | ||| ||||||| |||| ||||||||| || |||
Sbjct: 168 ggtatagccttcttgcagttcttcaatatcttgacacattcagcgtcaccccaatcatgc 109
Query: 473 atgatccacttgaggaagacagcattcgctggcggaatggcctcaaacatgtcgcc 528
| | |||||||||||||||| |||| || | |||| | |||||||||||||||
Sbjct: 108 agaacccacttgaggaagacaacatttgccgatggaacgctctcaaacatgtcgcc 53
>gb|CN141678.1|CN141678 WOUND1_1_E01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_1_E01_A002 3', mRNA sequence
Length = 584
Score = 71.9 bits (36), Expect = 8e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 413 ggtatagctttcttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgc 472
|||||||| |||||||||||||| | ||| ||||||| |||| ||||||||| || |||
Sbjct: 133 ggtatagccttcttgcagttcttcaatatcttgacacattcagcgtcaccccaatcatgc 74
Query: 473 atgatccacttgaggaagacagcattcgctggcggaatggcctcaaacatgtcgcc 528
| | |||||||||||||||| |||| || | |||| | |||||||||||||||
Sbjct: 73 agaacccacttgaggaagacaacatttgccgatggaacgctctcaaacatgtcgcc 18
>gb|CN145288.1|CN145288 WOUND1_28_A10.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_28_A10_A002 3', mRNA sequence
Length = 623
Score = 71.9 bits (36), Expect = 8e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 413 ggtatagctttcttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgc 472
|||||||| |||||||||||||| | ||| ||||||| |||| ||||||||| || |||
Sbjct: 148 ggtatagccttcttgcagttcttcaatatcttgacacattcagcgtcaccccaatcatgc 89
Query: 473 atgatccacttgaggaagacagcattcgctggcggaatggcctcaaacatgtcgcc 528
| | |||||||||||||||| |||| || | |||| | |||||||||||||||
Sbjct: 88 agaacccacttgaggaagacaacatttgccgatggaacgctctcaaacatgtcgcc 33
>gb|CN146677.1|CN146677 WOUND1_43_B07.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_43_B07_A002 3', mRNA sequence
Length = 754
Score = 71.9 bits (36), Expect = 8e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 413 ggtatagctttcttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgc 472
|||||||| |||||||||||||| | ||| ||||||| |||| ||||||||| || |||
Sbjct: 315 ggtatagccttcttgcagttcttcaatatcttgacacattcagcgtcaccccaatcatgc 256
Query: 473 atgatccacttgaggaagacagcattcgctggcggaatggcctcaaacatgtcgcc 528
| | |||||||||||||||| |||| || | |||| | |||||||||||||||
Sbjct: 255 agaacccacttgaggaagacaacatttgccgatggaacgctctcaaacatgtcgcc 200
>gb|CN150014.1|CN150014 WOUND1_66_H05.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_66_H05_A002 3', mRNA sequence
Length = 627
Score = 71.9 bits (36), Expect = 8e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 413 ggtatagctttcttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgc 472
|||||||| |||||||||||||| | ||| ||||||| |||| ||||||||| || |||
Sbjct: 172 ggtatagccttcttgcagttcttcaatatcttgacacattcagcgtcaccccaatcatgc 113
Query: 473 atgatccacttgaggaagacagcattcgctggcggaatggcctcaaacatgtcgcc 528
| | |||||||||||||||| |||| || | |||| | |||||||||||||||
Sbjct: 112 agaacccacttgaggaagacaacatttgccgatggaacgctctcaaacatgtcgcc 57
>gb|CX618728.1|CX618728 GABR1_41_G07.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_41_G07_A002 3', mRNA sequence
Length = 669
Score = 71.9 bits (36), Expect = 8e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 413 ggtatagctttcttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgc 472
|||||||| |||||||||||||| | ||| ||||||| |||| ||||||||| || |||
Sbjct: 221 ggtatagccttcttgcagttcttcaatatcttgacacattcagcgtcaccccaatcatgc 162
Query: 473 atgatccacttgaggaagacagcattcgctggcggaatggcctcaaacatgtcgcc 528
| | |||||||||||||||| |||| || | |||| | |||||||||||||||
Sbjct: 161 agaacccacttgaggaagacaacatttgccgatggaacgctctcaaacatgtcgcc 106
>gb|CX622109.1|CX622109 GABR1_62_C09.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_62_C09_A002 3', mRNA sequence
Length = 740
Score = 71.9 bits (36), Expect = 8e-011
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 413 ggtatagctttcttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgc 472
|||||||| |||||||||||||| | ||| ||||||| |||| ||||||||| || |||
Sbjct: 301 ggtatagccttcttgcagttcttcaatatcttgacacattcagcgtcaccccaatcatgc 242
Query: 473 atgatccacttgaggaagacagcattcgctggcggaatggcctcaaacatgtcgcc 528
| | |||||||||||||||| |||| || | |||| | |||||||||||||||
Sbjct: 241 agaacccacttgaggaagacaacatttgccgatggaacgctctcaaacatgtcgcc 186
>gb|CW063049.1|CW063049 104_308_10521687_1_30092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521687, DNA
sequence
Length = 635
Score = 69.9 bits (35), Expect = 3e-010
Identities = 116/143 (81%)
Strand = Plus / Minus
Query: 383 attatcaccttgccgcctgcatctcgtggaggtatagctttcttgcagttctttagaatc 442
||||| ||||| || |||||| |||||||||||||||| | |||||| ||||| || |||
Sbjct: 296 attattaccttccctcctgcagctcgtggaggtatagcctgcttgcacttcttcagtatc 237
Query: 443 gtgacacactcagagtcaccccagtcgtgcatgatccacttgaggaagacagcattcgct 502
| |||||||| ||| | ||||||||||| ||||||||||| || ||||| | |||
Sbjct: 236 ttcacacactcgtcgtcgctccagtcgtgcagaatccacttgagcaacacagcgtccgcc 177
Query: 503 ggcggaatggcctcaaacatgtc 525
|| ||||| ||||||||||||
Sbjct: 176 ggaggaatactctcaaacatgtc 154
>gb|CW152280.1|CW152280 104_553_11144405_116_36323_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144405, DNA
sequence
Length = 684
Score = 69.9 bits (35), Expect = 3e-010
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 383 attatcaccttgccgcctgcatctcgtggaggtatagctttcttgcagttctttagaatc 442
||||| ||||| || |||||| |||||||||||||||| | |||||| ||||| || |||
Sbjct: 61 attattaccttccctcctgcagctcgtggaggtatagcctgcttgcacttcttcagtatc 120
Query: 443 gtgacacactcagagtcaccccagtcgtgcatgatccacttgaggaagacagcattcgct 502
| |||||||| ||| | ||||||||||| ||||||||||| || ||||| | |||
Sbjct: 121 ttcacacactcgtcgtcgctccagtcgtgcagaatccacttgagcaacacagcgtccgcc 180
Query: 503 ggcggaatggcctcaaacatgtc 525
|| ||||| ||||||||||||
Sbjct: 181 ggaggaatactctcaaacatgtc 203
>gb|CF431162.1|CF431162 NIT1_6_C08.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_6_C08_A002 3', mRNA sequence
Length = 487
Score = 69.9 bits (35), Expect = 3e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 419 gctttcttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgcatgatc 478
||||||||||||||||| | ||| ||||||| || | ||||||||||| |||| |||
Sbjct: 152 gctttcttgcagttcttcaatatcttgacacattcggcatcaccccagtcatgcagaatc 93
Query: 479 cacttgaggaagacagcattcgctggcggaatggcctcaaacatgtc 525
||||||||||| || || || |||| ||||||| ||||||||||||
Sbjct: 92 cacttgaggaaaaccgcgtttgctgacggaatgctctcaaacatgtc 46
Score = 40.1 bits (20), Expect = 0.28
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 193 ctcgatgattgatcgaacacctaaaactggtatgat 228
|||||| || ||||||||||||| ||| ||||||||
Sbjct: 372 ctcgataatcgatcgaacacctagaacaggtatgat 337
>gb|CF490081.1|CF490081 POL1_62_H01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_62_H01_A002 3', mRNA sequence
Length = 623
Score = 69.9 bits (35), Expect = 3e-010
Identities = 116/143 (81%)
Strand = Plus / Minus
Query: 383 attatcaccttgccgcctgcatctcgtggaggtatagctttcttgcagttctttagaatc 442
||||| ||||| || |||||| |||||||||||||||| | |||||| ||||| || |||
Sbjct: 225 attattaccttccctcctgcagctcgtggaggtatagcctgcttgcacttcttcagtatc 166
Query: 443 gtgacacactcagagtcaccccagtcgtgcatgatccacttgaggaagacagcattcgct 502
| |||||||| ||| | ||||||||||| ||||||||||| || ||||| | |||
Sbjct: 165 ttcacacactcgtcgtcgctccagtcgtgcagaatccacttgagcaacacagcgtccgcc 106
Query: 503 ggcggaatggcctcaaacatgtc 525
|| ||||| ||||||||||||
Sbjct: 105 ggaggaatactctcaaacatgtc 83
>gb|CW353559.1|CW353559 fsbb001f016f20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f016f20, DNA
sequence
Length = 740
Score = 67.9 bits (34), Expect = 1e-009
Identities = 76/90 (84%)
Strand = Plus / Plus
Query: 365 ccaaccacggtatctactattatcaccttgccgcctgcatctcgtggaggtatagctttc 424
|||||||| |||||| |||||| | ||| || || ||||||||||||||||| |||||
Sbjct: 417 ccaaccaccatatctattattattatcttccctcccgcatctcgtggaggtattgctttt 476
Query: 425 ttgcagttctttagaatcgtgacacactca 454
||||||||||| | ||| |||||||||||
Sbjct: 477 ttgcagttcttcaatatcttgacacactca 506
>gb|BG558734.1|BG558734 RHIZ2_59_G10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 532
Score = 67.9 bits (34), Expect = 1e-009
Identities = 136/170 (80%)
Strand = Plus / Minus
Query: 365 ccaaccacggtatctactattatcaccttgccgcctgcatctcgtggaggtatagctttc 424
|||||||| |||| || ||||| ||||||| || ||||||| || ||| ||||||| |
Sbjct: 184 ccaaccacaatatcaacgattattgccttgcctccggcatctcttgaagggatagcttgc 125
Query: 425 ttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgcatgatccacttg 484
|| || ||||| | ||| ||| ||||||| || |||||||| |||| |||||||||
Sbjct: 124 ttacaattcttcaatatcttgatacactcatcatcgccccagtcatgcaaaatccacttg 65
Query: 485 aggaagacagcattcgctggcggaatggcctcaaacatgtcgccagcaac 534
|||||||||||||| || || |||||| || ||||||||| || |||||
Sbjct: 64 aggaagacagcatttgccggtggaatgctctgaaacatgtcacccgcaac 15
>gb|CN124677.1|CN124677 RHOH1_6_F06.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_6_F06_A002 3', mRNA sequence
Length = 619
Score = 67.9 bits (34), Expect = 1e-009
Identities = 73/86 (84%)
Strand = Plus / Minus
Query: 413 ggtatagctttcttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgc 472
|||||||| |||||||||||||| | ||| ||||||| |||| ||||||||| || |||
Sbjct: 110 ggtatagccttcttgcagttcttcaatatcttgacacattcagcgtcaccccaatcatgc 51
Query: 473 atgatccacttgaggaagacagcatt 498
| | |||||||||||||||| ||||
Sbjct: 50 agaacccacttgaggaagacaacatt 25
>gb|AI723825.1|AI723825 RHIZ1_12_H04.y1_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 427
Score = 65.9 bits (33), Expect = 5e-009
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 457 gtcaccccagtcgtgcatgatccacttgaggaagacagcattcgctggcggaatggcctc 516
|||||||||||| ||||| |||||||| ||||||||||| || || | ||||||| |||
Sbjct: 94 gtcaccccagtcatgcataatccacttaaggaagacagcgtttgccgacggaatgctctc 153
Query: 517 aaacatgtc 525
|||||||||
Sbjct: 154 aaacatgtc 162
>gb|CN150018.1|CN150018 WOUND1_66_H09.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_66_H09_A002 3', mRNA sequence
Length = 688
Score = 65.9 bits (33), Expect = 5e-009
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 413 ggtatagctttcttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgc 472
|||||||| |||||||||||||| | ||| ||||||| |||| ||||||||| || |||
Sbjct: 226 ggtatagccttcttgcagttcttcaatatcttgacacattcagcgtcaccccaatcatgc 167
Query: 473 atgatccacttgaggaagaca 493
| | ||||||||||||||||
Sbjct: 166 agaacccacttgaggaagaca 146
>gb|CN150866.1|CN150866 WOUND1_72_A06.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_72_A06_A002 3', mRNA sequence
Length = 725
Score = 63.9 bits (32), Expect = 2e-008
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 422 ttcttgcagttctttagaatcgtgacacactcagagtcaccccagtcgtgcatgatccac 481
|||||||||||||| | || ||||||| || | ||||||||||| ||||| ||||||
Sbjct: 324 ttcttgcagttcttcaatattttgacacattcggcatcaccccagtcatgcataatccac 265
Query: 482 ttgaggaagacagcattcgctggcggaatggcctcaaacatgtc 525
|| ||||||||||| || || | ||||||| ||||||||||||
Sbjct: 264 ttaaggaagacagcgtttgccgacggaatgctctcaaacatgtc 221
>gb|CW125845.1|CW125845 104_506_11112559_116_34722_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112559, DNA
sequence
Length = 370
Score = 61.9 bits (31), Expect = 8e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 645 gcccgccgccaacgtcgaccagggagcgtatcccctgaaacacgtcgccgcactccctga 704
|||||||| | |||||||| ||||||| ||||||||||| ||||||| ||||||| |||
Sbjct: 208 gcccgccggcgacgtcgacaagggagctaatcccctgaaagacgtcgctgcactccttga 267
Query: 705 cggcgatgtccatga 719
| ||| ||||||||
Sbjct: 268 ccacgacgtccatga 282
Score = 42.1 bits (21), Expect = 0.070
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 481 cttgaggaagacagcattcgctggcggaatggcctcaaacatgtc 525
|||||||||||| || || |||| ||||||| ||||||||||||
Sbjct: 44 cttgaggaagaccgcgtttgctgacggaatgctctcaaacatgtc 88
>gb|CF433215.1|CF433215 NIT1_25_E08.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_25_E08_A002 5', mRNA sequence
Length = 739
Score = 61.9 bits (31), Expect = 8e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 645 gcccgccgccaacgtcgaccagggagcgtatcccctgaaacacgtcgccgcactccctga 704
|||||||| | |||||||| ||||||| ||||||||||| ||||||| ||||||| |||
Sbjct: 633 gcccgccggcgacgtcgacaagggagctaatcccctgaaagacgtcgctgcactccttga 574
Query: 705 cggcgatgtccatga 719
| ||| ||||||||
Sbjct: 573 ccacgacgtccatga 559
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 196,704
Number of Sequences: 832831
Number of extensions: 196704
Number of successful extensions: 56721
Number of sequences better than 0.5: 96
Number of HSP's better than 0.5 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56461
Number of HSP's gapped (non-prelim): 238
length of query: 724
length of database: 491,359,669
effective HSP length: 20
effective length of query: 704
effective length of database: 474,703,049
effective search space: 334190946496
effective search space used: 334190946496
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)