BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3062418.2.1
(851 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF177065.1|BF177065 EM1_3_B09.g1_A002 Embryo 1 (EM1) Sor... 791 0.0
gb|BF177056.1|BF177056 EM1_3_A09.g1_A002 Embryo 1 (EM1) Sor... 781 0.0
gb|CD431007.1|CD431007 ETH1_6_B01.b1_A002 Ethylene-treated ... 708 0.0
gb|BM328758.1|BM328758 PIC1_26_B11.g1_A002 Pathogen-infecte... 622 e-176
gb|CW053212.1|CW053212 104_293_10515837_115_30191 Sorghum m... 460 e-127
gb|CW053339.1|CW053339 104_293_10515908_115_30191 Sorghum m... 460 e-127
gb|BG412794.1|BG412794 OV2_34_H07.b1_A002 Ovary 2 (OV2) Sor... 430 e-119
gb|BG412795.1|BG412795 OV2_34_H08.b1_A002 Ovary 2 (OV2) Sor... 375 e-102
gb|BG948068.1|BG948068 IP1_9_A05.g1_A002 Immature pannicle ... 339 3e-091
gb|AW922447.1|AW922447 DG1_19_F09.g1_A002 Dark Grown 1 (DG1... 321 6e-086
gb|BG239805.1|BG239805 OV1_29_C04.g1_A002 Ovary 1 (OV1) Sor... 280 2e-073
gb|BF704987.1|BF704987 RHIZ2_1_A02.g1_A003 Rhizome2 (RHIZ2)... 278 8e-073
gb|BF481476.1|BF481476 FM1_19_F05.g1_A003 Floral-Induced Me... 274 1e-071
gb|BI075135.1|BI075135 IP1_19_D09.g1_A002 Immature pannicle... 270 2e-070
gb|BG412484.1|BG412484 OV2_34_H07.g1_A002 Ovary 2 (OV2) Sor... 268 8e-070
gb|BI074347.1|BI074347 IP1_14_E12.g1_A002 Immature pannicle... 268 8e-070
gb|BI075107.1|BI075107 IP1_19_F12.g1_A002 Immature pannicle... 268 8e-070
gb|BG356885.1|BG356885 OV2_11_C02.g1_A002 Ovary 2 (OV2) Sor... 262 5e-068
gb|BI075510.1|BI075510 IP1_21_D08.g1_A002 Immature pannicle... 258 7e-067
gb|BG050964.1|BG050964 FM1_54_E04.b1_A003 Floral-Induced Me... 238 7e-061
gb|BI075368.1|BI075368 IP1_19_F12.b1_A002 Immature pannicle... 224 1e-056
gb|BG412485.1|BG412485 OV2_34_H08.g1_A002 Ovary 2 (OV2) Sor... 218 6e-055
gb|CW241422.1|CW241422 104_700_11218762_148_37541_037 Sorgh... 216 3e-054
gb|BF481302.1|BF481302 FM1_18_C08.g1_A003 Floral-Induced Me... 216 3e-054
gb|BG559003.1|BG559003 RHIZ2_53_D04.g1_A003 Rhizome2 (RHIZ2... 214 1e-053
gb|BZ367054.1|BZ367054 id02b04.g1 WGS-SbicolorF (JM107 adap... 208 6e-052
gb|CL165780.1|CL165780 104_361_10808896_114_31820_112 Sorgh... 208 6e-052
gb|BZ367053.1|BZ367053 id02b04.b1 WGS-SbicolorF (JM107 adap... 206 2e-051
gb|CW092082.1|CW092082 104_454_10998932_116_33041_074 Sorgh... 178 5e-043
gb|BI097917.1|BI097917 IP1_29_F08.g1_A002 Immature pannicle... 167 2e-039
gb|BG051535.1|BG051535 FM1_57_G01.g1_A003 Floral-Induced Me... 123 3e-026
gb|CL165781.1|CL165781 104_361_10808896_116_31821_112 Sorgh... 119 4e-025
gb|BF587914.1|BF587914 FM1_34_D09.g1_A003 Floral-Induced Me... 119 4e-025
gb|CD234207.1|CD234207 SS1_26_D01.b1_A012 Salt-stressed see... 119 4e-025
gb|BG558112.1|BG558112 RHIZ2_67_A03.g1_A003 Rhizome2 (RHIZ2... 109 4e-022
gb|CW304526.1|CW304526 104_789_11465829_116_35701_087 Sorgh... 100 4e-019
gb|AI724868.1|AI724868 RHIZ1_30_D02.y3_A001 Rhizome1 (RHIZ1... 90 4e-016
gb|CW116495.1|CW116495 104_492_11107149_116_34608_093 Sorgh... 76 6e-012
gb|CW154736.1|CW154736 104_557_11145760_148_36357_064 Sorgh... 76 6e-012
gb|CW299015.1|CW299015 104_781_11462882_148_35655_001 Sorgh... 68 1e-009
gb|BF587276.1|BF587276 FM1_34_D09.b1_A003 Floral-Induced Me... 66 6e-009
gb|CW476625.1|CW476625 fsbb001f233j03k0 Sorghum methylation... 58 1e-006
gb|AW923660.1|AW923660 DG1_57_B08.g1_A002 Dark Grown 1 (DG1... 58 1e-006
gb|CN144836.1|CN144836 WOUND1_25_F02.b2_A002 Wounded leaves... 56 5e-006
gb|CW299014.1|CW299014 104_781_11462882_116_35659_001 Sorgh... 54 2e-005
gb|BE359792.1|BE359792 DG1_57_B08.g2_A002 Dark Grown 1 (DG1... 54 2e-005
gb|BF586059.1|BF586059 FM1_26_B07.g1_A003 Floral-Induced Me... 54 2e-005
gb|CW304527.1|CW304527 104_789_11465829_148_35705_087 Sorgh... 52 9e-005
gb|CW472326.1|CW472326 fsbb001f227d11f0 Sorghum methylation... 48 0.001
gb|BG356442.1|BG356442 EM1_22_F02.g1_A002 Embryo 1 (EM1) So... 48 0.001
gb|CW077452.1|CW077452 104_381_10892527_116_31765_127 Sorgh... 46 0.005
gb|CW077453.1|CW077453 104_381_10892527_148_31764_127 Sorgh... 46 0.005
gb|CW081454.1|CW081454 104_419_10941845_116_32296_023 Sorgh... 46 0.005
gb|CW112744.1|CW112744 104_486_11105051_116_34545_036 Sorgh... 46 0.005
gb|CW112745.1|CW112745 104_486_11105051_148_34541_036 Sorgh... 46 0.005
gb|CW128496.1|CW128496 104_510_11114036_148_34753_078 Sorgh... 46 0.005
gb|CW164626.1|CW164626 104_572_11152084_148_36463_004 Sorgh... 46 0.005
gb|CW190500.1|CW190500 104_612_11174536_148_36759_062 Sorgh... 46 0.005
gb|CW210000.1|CW210000 104_640_11189560_116_37000_060 Sorgh... 46 0.005
gb|CW457729.1|CW457729 fsbb001f203k19f0 Sorghum methylation... 46 0.005
gb|CW457730.1|CW457730 fsbb001f203k19k0 Sorghum methylation... 46 0.005
gb|AW284341.2|AW284341 LG1_275_C12.g1_A002 Light Grown 1 (L... 46 0.005
gb|AW286529.2|AW286529 LG1_334_A07.g1_A002 Light Grown 1 (L... 46 0.005
gb|AW677220.1|AW677220 DG1_6_D11.g1_A002 Dark Grown 1 (DG1)... 46 0.005
gb|AW744827.1|AW744827 LG1_384_D09.g1_A002 Light Grown 1 (L... 46 0.005
gb|AW922651.1|AW922651 DG1_20_B09.g1_A002 Dark Grown 1 (DG1... 46 0.005
gb|AW923243.1|AW923243 DG1_50_B11.g1_A002 Dark Grown 1 (DG1... 46 0.005
gb|AW923628.1|AW923628 DG1_56_E12.g1_A002 Dark Grown 1 (DG1... 46 0.005
gb|BE356472.1|BE356472 DG1_125_D03.g1_A002 Dark Grown 1 (DG... 46 0.005
gb|BE356746.1|BE356746 DG1_12_B04.g1_A002 Dark Grown 1 (DG1... 46 0.005
gb|BE357387.1|BE357387 DG1_15_B06.b2_A002 Dark Grown 1 (DG1... 46 0.005
gb|BE358119.1|BE358119 DG1_24_H05.g1_A002 Dark Grown 1 (DG1... 46 0.005
gb|BE358884.1|BE358884 DG1_32_G02.g1_A002 Dark Grown 1 (DG1... 46 0.005
gb|BE359233.1|BE359233 DG1_39_G12.g1_A002 Dark Grown 1 (DG1... 46 0.005
gb|BE359750.1|BE359750 DG1_56_E12.g2_A002 Dark Grown 1 (DG1... 46 0.005
gb|BE360002.1|BE360002 DG1_60_H01.g2_A002 Dark Grown 1 (DG1... 46 0.005
gb|BE360562.1|BE360562 DG1_64_C07.b1_A002 Dark Grown 1 (DG1... 46 0.005
gb|BE361214.1|BE361214 DG1_70_H03.g1_A002 Dark Grown 1 (DG1... 46 0.005
gb|BE361473.1|BE361473 DG1_72_G02.g1_A002 Dark Grown 1 (DG1... 46 0.005
gb|BG464390.1|BG464390 EM1_69_B10.g1_A002 Embryo 1 (EM1) So... 46 0.005
gb|BG557199.1|BG557199 EM1_43_H09.g1_A002 Embryo 1 (EM1) So... 46 0.005
gb|BG557200.1|BG557200 EM1_43_H10.g1_A002 Embryo 1 (EM1) So... 46 0.005
gb|CD222337.1|CD222337 CCC1_21_H03.b1_A007 Callus culture/c... 46 0.005
gb|CD461465.1|CD461465 SA1_32_D07.b1_A002 Salicylic acid-tr... 46 0.005
gb|CF430559.1|CF430559 NIT1_3_G08.b1_A002 Nitrogen-deficien... 46 0.005
gb|CF433098.1|CF433098 NIT1_25_G09.b1_A002 Nitrogen-deficie... 46 0.005
gb|CN128121.1|CN128121 RHOH1_27_D08.b1_A002 Acid- and alkal... 46 0.005
gb|CX614275.1|CX614275 GABR1_13_C10.b1_A002 GA- or brassino... 46 0.005
gb|CX614453.1|CX614453 GABR1_14_E02.b1_A002 GA- or brassino... 46 0.005
gb|CX615129.1|CX615129 GABR1_18_G09.b1_A002 GA- or brassino... 46 0.005
gb|CX616148.1|CX616148 GABR1_26_D10.b1_A002 GA- or brassino... 46 0.005
gb|CX620938.1|CX620938 GABR1_55_B01.b1_A002 GA- or brassino... 46 0.005
gb|U33817.1|SBU33817 Sorghum bicolor dhurrinase mRNA, nucle... 46 0.005
gb|AW676919.1|AW676919 DG1_2_E11.b1_A002 Dark Grown 1 (DG1)... 42 0.082
gb|CW143523.1|CW143523 104_535_11137466_116_34955_009 Sorgh... 40 0.33
gb|CW143524.1|CW143524 104_535_11137466_148_34959_009 Sorgh... 40 0.33
gb|CW168850.1|CW168850 104_578_11154365_116_36603_021 Sorgh... 40 0.33
gb|CW391208.1|CW391208 fsbb001f077d18f0 Sorghum methylation... 40 0.33
gb|BG158722.1|BG158722 RHIZ2_44_D05.g1_A003 Rhizome2 (RHIZ2... 40 0.33
gb|BG355936.2|BG355936 EM1_18_E01.g1_A002 Embryo 1 (EM1) So... 40 0.33
gb|CN151024.1|CN151024 WOUND1_73_B01.b1_A002 Wounded leaves... 40 0.33
gb|CX615723.1|CX615723 GABR1_22_F02.b1_A002 GA- or brassino... 40 0.33
>gb|BF177065.1|BF177065 EM1_3_B09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 620
Score = 791 bits (399), Expect = 0.0
Identities = 512/549 (93%), Gaps = 3/549 (0%)
Strand = Plus / Plus
Query: 167 cagcggattacattgggatcaatcaatacaccgctagctacgtgaagggccagaaactgc 226
|||| ||||| |||||||||||||||||||| ||||||||| | |||||||||||| |||
Sbjct: 1 cagcagattatattgggatcaatcaatacacagctagctacattaagggccagaaattgc 60
Query: 227 tccagcagaagcctactagctactcagctgattggcaggttcaatatgttttagaacgga 286
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 61 ttcagcagaagcctactagctactcagctgattggcaggttcaatatgctttagaacgga 120
Query: 287 acggcaaaccgatcggaccacaggcgaattcaaagtggctttacatcgtcccagaaggga 346
| |||||||| || |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 121 atggcaaaccaattggaccacaggcgaattcaaactggctttacatcgtcccatcgggga 180
Query: 347 tgtacggttgtgtgaactatctgaagcacaagtatggaaatccaacagttttcataaccg 406
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 181 tgtatggttgtgtgaactatctgaagcagaagtatggaaatccaacagttttcataactg 240
Query: 407 agaacggaatggatcagccaggaaacttgactcgtggccagtacctgcacgacaccacaa 466
|||||||||||||||| || ||||||||||| |||| |||||| |||||||||||||||
Sbjct: 241 agaacggaatggatcaacctggaaacttgacccgtgagcagtacttgcacgacaccacaa 300
Query: 467 gggtgcaattctacaaaggctacctcgctgagctgaggaaagccatcgatgacggcgccg 526
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 301 gggtgcaattctacaaaggctacctcgctgagctgaagaaagccatcgatgacggcgcta 360
Query: 527 acgtggctggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttaca 586
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 361 acgtggctggctacttcgcttggtctctccttgacaacttcgagtggcagtcaggttaca 420
Query: 587 cgtccaagtttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacacccca 646
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cgtccaagttcggaattgtctacgtcgacttcagcacgcccaagctcgaacgacacccca 480
Query: 647 aggcgtcagcctactggttcagagacatgctccagaaacacttatgagcgtctaacaacc 706
||| |||||||||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct: 481 aggattcagcctactggttcagagacatgcttcagaaacac---tgagtgtctaacaacc 537
Query: 707 aagcctgaa 715
|||||||||
Sbjct: 538 aagcctgaa 546
>gb|BF177056.1|BF177056 EM1_3_A09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 636
Score = 781 bits (394), Expect = 0.0
Identities = 560/615 (91%), Gaps = 19/615 (3%)
Strand = Plus / Plus
Query: 211 aagggccagaaactgctccagcagaagcctactagctactcagctgattggcaggttcaa 270
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 aagggccagaaattgctccagcagaagcctactagctactcagctgattggcaggttcaa 68
Query: 271 tatgttttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtggctttac 330
|||| |||||||||||| |||||||| || |||||||||||||||||||| |||||||||
Sbjct: 69 tatgctttagaacggaatggcaaaccaattggaccacaggcgaattcaaactggctttac 128
Query: 331 atcgtcccagaagggatgtacggttgtgtgaactatctgaagcacaagtatggaaatcca 390
||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 129 atcgtcccatcggggatgtatggttgtgtgaactatctgaagcagaagtatggaaatcca 188
Query: 391 acagttttcataaccgagaacggaatggatcagccaggaaacttgactcgtggccagtac 450
|||||||||||||| ||||||||||||||||| || ||||||||||| |||| ||||||
Sbjct: 189 acagttttcataactgagaacggaatggatcaacctggaaacttgacccgtgagcagtac 248
Query: 451 ctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgaggaaagcc 510
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 249 ttgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgaagaaagcc 308
Query: 511 atcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaacttcgag 570
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 309 atcgatgacggcgctaacgtggctggctacttcgcttggtctctccttgacaacttcgag 368
Query: 571 tggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcacgcccaag 630
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 369 tggcagtcaggttacacgtccaagttcggaattgtctacgtcgacttcagcacgcccaag 428
Query: 631 ctcgaacgacaccccaaggcgtcagcctactggttcagagacatgctccagaaacactta 690
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 429 ctcgaacgacaccccaaggattcagcctactggttcagagacatgcttcagaaacac--- 485
Query: 691 tgagcgtctaacaaccaagcctga-------aataggtaccattaaatttcttcag-cgt 742
|||| ||||||||||||||||||| | ||| ||||||| ||||||||||| |||
Sbjct: 486 tgagtgtctaacaaccaagcctgaaccctggagtagttaccattgaatttcttcagacgt 545
Query: 743 tgcctaagctag--------tggccatattattgtagcaaaagttgtaagctagcacagt 794
|||||||| ||| ||||||||||||| ||||||||| ||||||||||| ||||
Sbjct: 546 tgcctaagttagtgtttggctggccatattattctagcaaaagctgtaagctagctcagt 605
Query: 795 gcaagggtatcaaaa 809
||||||||||||||
Sbjct: 606 acaagggtatcaaaa 620
>gb|CD431007.1|CD431007 ETH1_6_B01.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_B01_A002 3', mRNA sequence
Length = 609
Score = 708 bits (357), Expect = 0.0
Identities = 516/570 (90%), Gaps = 18/570 (3%)
Strand = Plus / Plus
Query: 255 tgattggcaggttcaatatgttttagaacggaacggcaaaccgatcggaccacaggcgaa 314
|||||||||||||||||||| |||||||||||| |||||||| || ||||||||||||||
Sbjct: 1 tgattggcaggttcaatatgctttagaacggaatggcaaaccaattggaccacaggcgaa 60
Query: 315 ttcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaactatctgaagca 374
|||||| ||||||||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct: 61 ttcaaactggctttacattgtcccatcggggatgtatggttgtgtgaactatctgaagca 120
Query: 375 caagtatggaaatccaacagttttcataaccgagaacggaatggatcagccaggaaactt 434
||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 121 gaagtatggaaatccaacagttttcataactgagaacggaatggatcaacccggaaactt 180
Query: 435 gactcgtggccagtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgc 494
||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gacccgtgagcagtacttgcacgacaccacaagggtgcaattctacaaaggctacctcgc 240
Query: 495 tgagctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctct 554
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 241 tgagctgaagaaagccatcgatgacggcgctaacgtggctggctacttcgcttggtctct 300
Query: 555 cctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcga 614
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 301 ccttgacaacttcgagtggcagtcaggttacacgtccaagttcggaattgtctacgtcga 360
Query: 615 cttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacat 674
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 361 cttcagcacgcccaagctcgaacgacaccccaaggattcagcctactggttcagagacat 420
Query: 675 gctccagaaacacttatgagcgtctaacaaccaagcctga-------aataggtaccatt 727
||| ||||||||| |||| ||||||||||||||||||| | ||| |||||||
Sbjct: 421 gcttcagaaacac---tgagtgtctaacaaccaagcctgaaccctggagtagttaccatt 477
Query: 728 aaatttcttcagcgttgcctaagctag--------tggccatattattgtagcaaaagtt 779
|||||||||||||||||||||| ||| ||||||||||||| ||||||||| |
Sbjct: 478 gaatttcttcagcgttgcctaagttagtgtttggctggccatattattctagcaaaagct 537
Query: 780 gtaagctagcacagtgcaagggtatcaaaa 809
|||||||||| |||| ||||||||||||||
Sbjct: 538 gtaagctagctcagtacaagggtatcaaaa 567
>gb|BM328758.1|BM328758 PIC1_26_B11.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 538
Score = 622 bits (314), Expect = e-176
Identities = 468/519 (90%), Gaps = 19/519 (3%)
Strand = Plus / Plus
Query: 306 acaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaacta 365
||||||||||||||| ||||||||||| |||||| |||||||| ||||||||||||||
Sbjct: 1 acaggcgaattcaaactggctttacattgtcccatcggggatgtatggttgtgtgaacta 60
Query: 366 tctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggatcagcc 425
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 61 tctgaagcagaagtatggaaatccaacagttttcataactgagaacggaatggatcaacc 120
Query: 426 aggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctacaaagg 485
||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 121 tggaaacttgacccgtgagcagtacttgcacgacaccacaagggtgcaattctacaaagg 180
Query: 486 ctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgc 545
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 181 ctacctcgctgagctgaagaaagccatcgatgacggcgctaacgtggctggctacttcgc 240
Query: 546 ttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaatcgt 605
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 241 ttggtctctccttgacaacttcgagtggcagtcaggttacacgtccaagttcggaattgt 300
Query: 606 ctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctactggtt 665
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 301 ctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggattcagcctactggtt 360
Query: 666 cagagacatgctccagaaacacttatgagcgtctaacaaccaagcctga-------aata 718
|||||||||||| ||||||||| |||| ||||||||||||||||||| | ||
Sbjct: 361 cagagacatgcttcagaaacac---tgagtgtctaacaaccaagcctgaaccctggagta 417
Query: 719 ggtaccattaaatttcttcagcgttgcctaagctag--------tggccatattattgta 770
| ||||||| ||||||||||||||||||||| ||| ||||||||||||| ||
Sbjct: 418 gttaccatt-gatttcttcagcgttgcctaagttagtgtttggctggccatattattcta 476
Query: 771 gcaaaagttgtaagctagcacagtgcaagggtatcaaaa 809
||||||| ||||||||||| |||| ||||||||||||||
Sbjct: 477 gcaaaagctgtaagctagctcagtacaagggtatcaaaa 515
>gb|CW053212.1|CW053212 104_293_10515837_115_30191 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515837, DNA
sequence
Length = 585
Score = 460 bits (232), Expect = e-127
Identities = 349/389 (89%), Gaps = 18/389 (4%)
Strand = Plus / Minus
Query: 412 ggaatggatcagccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtg 471
||||||||||| || ||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct: 386 ggaatggatcaacctggaaacttgacccgtgagcagtacttgcacgacaccacaagggtg 327
Query: 472 caattctacaaaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtg 531
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 326 caattctacaaaggctacctcgctgagctgaagaaagccatcgatgacggcgctaacgtg 267
Query: 532 gctggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtcc 591
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 266 gctggctacttcgcttggtctctccttgacaacttcgagtggcagtcaggttacacgtcc 207
Query: 592 aagtttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcg 651
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aagttcggaattgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggat 147
Query: 652 tcagcctactggttcagagacatgctccagaaacacttatgagcgtctaacaaccaagcc 711
|||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||
Sbjct: 146 tcagcctactggttcagagacatgcttcagaaacact---gagtgtctaacaaccaagcc 90
Query: 712 tgaaa-------taggtaccattaaatttcttcagcgttgcctaagctagtg-------- 756
|||| ||| ||||||| |||||||||||||||||||||| |||||
Sbjct: 89 tgaaccctggagtagttaccattgaatttcttcagcgttgcctaagttagtgtttggctg 30
Query: 757 gccatattattgtagcaaaagttgtaagc 785
||||||||||| ||||||||| |||||||
Sbjct: 29 gccatattattctagcaaaagctgtaagc 1
Score = 139 bits (70), Expect = 5e-031
Identities = 94/102 (92%)
Strand = Plus / Minus
Query: 312 gaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaactatctgaa 371
||||||||| ||||||||||| |||||| |||||||| ||||||||||||||||||||
Sbjct: 585 gaattcaaactggctttacattgtcccatcggggatgtatggttgtgtgaactatctgaa 526
Query: 372 gcacaagtatggaaatccaacagttttcataaccgagaacgg 413
||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 525 gcagaagtatggaaatccaacagttttcataactgagaacgg 484
>gb|CW053339.1|CW053339 104_293_10515908_115_30191 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515908, DNA
sequence
Length = 582
Score = 460 bits (232), Expect = e-127
Identities = 349/389 (89%), Gaps = 18/389 (4%)
Strand = Plus / Minus
Query: 412 ggaatggatcagccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtg 471
||||||||||| || ||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct: 386 ggaatggatcaacctggaaacttgacccgtgagcagtacttgcacgacaccacaagggtg 327
Query: 472 caattctacaaaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtg 531
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 326 caattctacaaaggctacctcgctgagctgaagaaagccatcgatgacggcgctaacgtg 267
Query: 532 gctggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtcc 591
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 266 gctggctacttcgcttggtctctccttgacaacttcgagtggcagtcaggttacacgtcc 207
Query: 592 aagtttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcg 651
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aagttcggaattgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggat 147
Query: 652 tcagcctactggttcagagacatgctccagaaacacttatgagcgtctaacaaccaagcc 711
|||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||
Sbjct: 146 tcagcctactggttcagagacatgcttcagaaacact---gagtgtctaacaaccaagcc 90
Query: 712 tgaaa-------taggtaccattaaatttcttcagcgttgcctaagctagtg-------- 756
|||| ||| ||||||| |||||||||||||||||||||| |||||
Sbjct: 89 tgaaccctggagtagttaccattgaatttcttcagcgttgcctaagttagtgtttggctg 30
Query: 757 gccatattattgtagcaaaagttgtaagc 785
||||||||||| ||||||||| |||||||
Sbjct: 29 gccatattattctagcaaaagctgtaagc 1
Score = 133 bits (67), Expect = 3e-029
Identities = 91/99 (91%)
Strand = Plus / Minus
Query: 315 ttcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaactatctgaagca 374
|||||| ||||||||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct: 582 ttcaaactggctttacattgtcccatcggggatgtatggttgtgtgaactatctgaagca 523
Query: 375 caagtatggaaatccaacagttttcataaccgagaacgg 413
||||||||||||||||||||||||||||| ||||||||
Sbjct: 522 gaagtatggaaatccaacagttttcataactgagaacgg 484
>gb|BG412794.1|BG412794 OV2_34_H07.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 562
Score = 430 bits (217), Expect = e-119
Identities = 455/533 (85%), Gaps = 1/533 (0%)
Strand = Plus / Plus
Query: 87 tatccacagataatgcaagatattgtgaaagagaggctgccccaagtttactccggagca 146
|||||||| |||||||||||| |||||||||||||||| ||| | ||| ||||| |||||
Sbjct: 1 tatccacaaataatgcaagatcttgtgaaagagaggctaccc-aggttcactcctgagca 59
Query: 147 agctaagttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagcta 206
|||||| |||||||||||||| || || |||||||| |||||| ||||||| | |||||
Sbjct: 60 agctaaattggtcaagggctcggcagactacattggtatcaatgaatacacatccagcta 119
Query: 207 cgtgaagggccagaaactgctccagcagaagcctactagctactcagctgattggcaggt 266
| ||||||| ||||||||||||||||||| ||| | ||||||||| || |||||||||||
Sbjct: 120 catgaagggacagaaactgctccagcagacgcccagtagctactctgccgattggcaggt 179
Query: 267 tcaatatgttttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtggct 326
||||||||||| | ||| || |||||||| || |||||| |||||||||| || |||||
Sbjct: 180 ccaatatgtttttgcacgcaatggcaaaccaattggaccaaaggcgaattctaattggct 239
Query: 327 ttacatcgtcccagaagggatgtacggttgtgtgaactatctgaagcacaagtatggaaa 386
|||||||||||| |||||||| || ||||||||||| || ||| | |||||||| ||
Sbjct: 240 ttacatcgtcccgacggggatgtatggatgtgtgaactacctcaaggagaagtatgggaa 299
Query: 387 tccaacagttttcataaccgagaacggaatggatcagccaggaaacttgactcgtggcca 446
|||||| || | ||| |||||||| |||||||||||||| ||||||||||| |||| |||
Sbjct: 300 tccaactgtctacattaccgagaatggaatggatcagcctggaaacttgacccgtgacca 359
Query: 447 gtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgaggaa 506
|||||||| ||| |||||||||||| ||||||| | ||||| | | |||||| ||
Sbjct: 360 gtacctgcgcgatgccacaagggtgcggttctacagaagctacattggccagctgaaaaa 419
Query: 507 agccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaactt 566
|||||| ||| | ||||| ||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 420 agccatagatcagggcgcaaacgtggctggctacttcgcctggtctctccttgacaactt 479
Query: 567 cgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttca 619
|||||||| |||||| ||| ||||||||||||| ||||||||||| |||||||
Sbjct: 480 cgagtggctgtcaggatactcgtccaagtttggcatcgtctacgttgacttca 532
>gb|BG412795.1|BG412795 OV2_34_H08.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 492
Score = 375 bits (189), Expect = e-102
Identities = 418/493 (84%), Gaps = 1/493 (0%)
Strand = Plus / Plus
Query: 87 tatccacagataatgcaagatattgtgaaagagaggctgccccaagtttactccggagca 146
|||||||| ||||||||||| |||||||||||||||| ||| | ||| ||||| |||||
Sbjct: 1 tatccacaactaatgcaagatcttgtgaaagagaggctaccc-acgttcactcctgagca 59
Query: 147 agctaagttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagcta 206
|||||| |||||||||||||| || || |||||||| |||||| ||||||| | |||||
Sbjct: 60 agctaaattggtcaagggctcggcagactacattggtatcaatgaatacacatccagcta 119
Query: 207 cgtgaagggccagaaactgctccagcagaagcctactagctactcagctgattggcaggt 266
| ||||||| ||||||||||||||||||| ||| | ||||||||| || |||||||||||
Sbjct: 120 catgaagggacagaaactgctccagcagacgcccagtagctactctgccgattggcaggt 179
Query: 267 tcaatatgttttagaacggaacggcaaaccgatcggaccacaggcgaattcaaagtggct 326
||||||||||| | ||| || |||||||| || |||||| |||||||||| || |||||
Sbjct: 180 ccaatatgtttttgcacgcaatggcaaaccaattggaccaaaggcgaattctaattggct 239
Query: 327 ttacatcgtcccagaagggatgtacggttgtgtgaactatctgaagcacaagtatggaaa 386
|||||||||||| |||||||| || ||||||||||| || ||| | |||||||| ||
Sbjct: 240 ttacatcgtcccgacggggatgtatggatgtgtgaactacctcaaggagaagtatgggaa 299
Query: 387 tccaacagttttcataaccgagaacggaatggatcagccaggaaacttgactcgtggcca 446
|||||| || | ||| |||||||| |||||||||||||| ||||||||||| |||| |||
Sbjct: 300 tccaactgtctacattaccgagaatggaatggatcagcctggaaacttgacccgtgacca 359
Query: 447 gtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgaggaa 506
|||||||| ||| |||||||||||| ||||||| | ||||| | | |||||| ||
Sbjct: 360 gtacctgcgcgatgccacaagggtgcggttctacagaagctacattggccagctgaaaaa 419
Query: 507 agccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaactt 566
|||||| ||| | ||||| ||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 420 agccatagatcatggcgcaaacgtggctggctacttcgcctggtctctccttgacaactt 479
Query: 567 cgagtggcagtca 579
|||||||| ||||
Sbjct: 480 cgagtggctgtca 492
>gb|BG948068.1|BG948068 IP1_9_A05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 636
Score = 339 bits (171), Expect = 3e-091
Identities = 386/458 (84%), Gaps = 6/458 (1%)
Strand = Plus / Plus
Query: 226 ctccagcagaagcctactagctactcagctgattggcaggttcaatatgttttagaacgg 285
|||||||||| ||| | ||||||||| || ||||||||||| ||||||||||| | |||
Sbjct: 1 ctccagcagacgcccagtagctactctgccgattggcaggtccaatatgtttttgcacgc 60
Query: 286 aacggcaaaccgatcggaccacaggcgaattcaaagtggctttacatcgtcccagaaggg 345
|| |||||||| || |||||| |||||||||| || ||||||||||||||||| |||
Sbjct: 61 aatggcaaaccaattggaccaaaggcgaattctaattggctttacatcgtcccgacgggg 120
Query: 346 atgtacggttgtgtgaactatctgaagcacaagtatggaaatccaacagttttcataacc 405
||||| || ||||||||||| || ||| | |||||||| |||||||| || | ||| |||
Sbjct: 121 atgtatggatgtgtgaactacctcaaggagaagtatgggaatccaactgtctacattacc 180
Query: 406 gagaacggaatggatcagccaggaaacttgactcgtggccagtacctgcacgacaccaca 465
||||| |||||||||||||| ||||||||||| |||| ||||||||||| ||| |||||
Sbjct: 181 gagaatggaatggatcagcctggaaacttgacccgtgaccagtacctgcgcgatgccaca 240
Query: 466 agggtgcaattctacaaaggctacctcgctgagctgaggaaagccatcgatgacggcgcc 525
||||||| ||||||| | ||||| | | |||||| |||||||| ||| | |||||
Sbjct: 241 agggtgcggttctacagaagctacattggccagctgaaaaaagccatagatcagggcgca 300
Query: 526 gacgtggctggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttac 585
||||||||||||||||||| ||||||||||| |||||||||||||||| |||||| |||
Sbjct: 301 aacgtggctggctacttcgcctggtctctccttgacaacttcgagtggctgtcaggatac 360
Query: 586 acgtccaagtttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacacccc 645
||||||||||||| ||||||||||| ||||||| || ||||||||| ||||||
Sbjct: 361 tcgtccaagtttggcatcgtctacgttgacttcaatac------gctcgaacggcacccc 414
Query: 646 aaggcgtcagcctactggttcagagacatgctccagaa 683
|||||||| |||||||||||||| |||||||| |||||
Sbjct: 415 aaggcgtcggcctactggttcagggacatgcttcagaa 452
>gb|AW922447.1|AW922447 DG1_19_F09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 634
Score = 321 bits (162), Expect = 6e-086
Identities = 372/441 (84%), Gaps = 7/441 (1%)
Strand = Plus / Plus
Query: 243 tagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaaccgatcgg 302
||||||||| || ||||||||||| ||||||||||| | ||| || |||||||| || ||
Sbjct: 9 tagctactctgccgattggcaggtccaatatgtttt-gcacgcaatggcaaaccaattgg 67
Query: 303 accacaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaa 362
|||| |||||||||| || ||||||||||||||||| |||||||| || ||||||||
Sbjct: 68 accaaaggcgaattctaattggctttacatcgtcccgacggggatgtatggatgtgtgaa 127
Query: 363 ctatctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggatca 422
||| || ||| | |||||||| |||||||| || | ||| |||||||| |||||||||||
Sbjct: 128 ctacctcaaggagaagtatgggaatccaactgtctacattaccgagaatggaatggatca 187
Query: 423 gccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctacaa 482
||| ||||||||||| |||| ||||||||||| ||| |||||||||||| |||||||
Sbjct: 188 gcctggaaacttgacccgtgaccagtacctgcgcgatgccacaagggtgcggttctacag 247
Query: 483 aggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctactt 542
| ||||| | | |||||| |||||||| ||| | ||||| ||||||||||||||||
Sbjct: 248 aagctacattggccagctgaaaaaagccatagatcagggcgcaaacgtggctggctactt 307
Query: 543 cgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaat 602
||| ||||||||||| |||||||||||||||| |||||| ||| ||||||||||||| ||
Sbjct: 308 cgcctggtctctccttgacaacttcgagtggctgtcaggatactcgtccaagtttggcat 367
Query: 603 cgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctactg 662
||||||||| ||||||| || ||||||||| |||||||||||||| ||||||||
Sbjct: 368 cgtctacgttgacttcaatac------gctcgaacggcaccccaaggcgtcggcctactg 421
Query: 663 gttcagagacatgctccagaa 683
|||||| |||||||| |||||
Sbjct: 422 gttcagggacatgcttcagaa 442
>gb|BG239805.1|BG239805 OV1_29_C04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 526
Score = 280 bits (141), Expect = 2e-073
Identities = 317/376 (84%), Gaps = 6/376 (1%)
Strand = Plus / Plus
Query: 308 aggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaactatc 367
|||||||||| || ||||||||||||||||| |||||||| || ||||||||||| |
Sbjct: 1 aggcgaattctaattggctttacatcgtcccgacggggatgtatggatgtgtgaactacc 60
Query: 368 tgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggatcagccag 427
| ||| | |||||||| |||||||| || | ||| |||||||| |||||||||||||| |
Sbjct: 61 tcaaggagaagtatgggaatccaactgtctacattaccgagaatggaatggatcagcctg 120
Query: 428 gaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctacaaaggct 487
|||||||||| |||| ||||||||||| ||| |||||||||||| ||||||| | |||
Sbjct: 121 gaaacttgacccgtgaccagtacctgcgcgatgccacaagggtgcggttctacagaagct 180
Query: 488 acctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgctt 547
|| | | |||||| |||||||| ||| | ||||| ||||||||||||||||||| |
Sbjct: 181 acattggccagctgaaaaaagccatagatcagggcgcaaacgtggctggctacttcgcct 240
Query: 548 ggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaatcgtct 607
|||||||||| |||||||||||||||| |||||| ||| ||||||||||||| |||||||
Sbjct: 241 ggtctctccttgacaacttcgagtggctgtcaggatactcgtccaagtttggcatcgtct 300
Query: 608 acgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctactggttca 667
|||| ||||||| || ||||||||| |||||||||||||| |||||||||||||
Sbjct: 301 acgttgacttcaatac------gctcgaacggcaccccaaggcgtcggcctactggttca 354
Query: 668 gagacatgctccagaa 683
| |||||||| |||||
Sbjct: 355 gggacatgcttcagaa 370
>gb|BF704987.1|BF704987 RHIZ2_1_A02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 479
Score = 278 bits (140), Expect = 8e-073
Identities = 322/383 (84%), Gaps = 6/383 (1%)
Strand = Plus / Plus
Query: 301 ggaccacaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtg 360
|||||| |||||||||| || ||||||||||||||||| |||||||| || ||||||
Sbjct: 8 ggaccaaaggcgaattctaattggctttacatcgtcccgacggggatgtatggatgtgtg 67
Query: 361 aactatctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggat 420
||||| || ||| | |||||||| |||||||| || | ||| |||||||| |||||||||
Sbjct: 68 aactacctcaaggagaagtatgggaatccaactgtctacattaccgagaatggaatggat 127
Query: 421 cagccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctac 480
||||| ||||||||||| |||| |||||||||| ||| |||||||||||| ||||||
Sbjct: 128 cagcctggaaacttgacccgtgatcagtacctgcgcgatgccacaagggtgcggttctac 187
Query: 481 aaaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctac 540
| | ||||| | | |||||| |||||||| ||| | ||||| ||||||||||||||
Sbjct: 188 agaagctacattggccagctgaaaaaagccatagatcagggcgcaaacgtggctggctac 247
Query: 541 ttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttgga 600
||||| ||||||||||| |||||||||||||||| |||||| ||| |||||||||||||
Sbjct: 248 ttcgcctggtctctccttgacaacttcgagtggctgtcaggatactcgtccaagtttggc 307
Query: 601 atcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctac 660
||||||||||| ||||||| || ||||||||| |||||||||||||| ||||||
Sbjct: 308 atcgtctacgttgacttcaatac------gctcgaacggcaccccaaggcgtcggcctac 361
Query: 661 tggttcagagacatgctccagaa 683
|||||||| |||||||| |||||
Sbjct: 362 tggttcagggacatgcttcagaa 384
>gb|BF481476.1|BF481476 FM1_19_F05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 500
Score = 274 bits (138), Expect = 1e-071
Identities = 320/381 (83%), Gaps = 6/381 (1%)
Strand = Plus / Plus
Query: 303 accacaggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaa 362
|||| |||||||||| || ||||||||||||||||| |||||||| || ||||||||
Sbjct: 1 accaaaggcgaattctaattggctttacatcgtcccgacggggatgtatggatgtgtgaa 60
Query: 363 ctatctgaagcacaagtatggaaatccaacagttttcataaccgagaacggaatggatca 422
||| || ||| | |||||||| |||||||| || | ||| |||||||| |||||||||||
Sbjct: 61 ctacctcaaggagaagtatgggaatccaactgtctacattaccgagaatggaatggatca 120
Query: 423 gccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaattctacaa 482
||| ||||||||||| |||| |||||||||| ||| |||||||||||| |||||||
Sbjct: 121 gcctggaaacttgacccgtgatcagtacctgcgcgatgccacaagggtgcggttctacag 180
Query: 483 aggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggctggctactt 542
| ||||| | | |||||| |||||||| ||| | ||||| ||||||||||||||||
Sbjct: 181 aagctacattggccagctgaaaaaagccatagatcagggcgcaaacgtggctggctactt 240
Query: 543 cgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaat 602
||| ||||||||||| |||||||||||||||| |||||| ||| ||||||||||||| ||
Sbjct: 241 cgcctggtctctccttgacaacttcgagtggctgtcaggatactcgtccaagtttggcat 300
Query: 603 cgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctactg 662
||||||||| ||||||| || ||||||||| |||||||||||||| ||||||||
Sbjct: 301 cgtctacgttgacttcaatac------gctcgaacggcaccccaaggcgtcggcctactg 354
Query: 663 gttcagagacatgctccagaa 683
|||||| |||||||| |||||
Sbjct: 355 gttcagggacatgcttcagaa 375
>gb|BI075135.1|BI075135 IP1_19_D09.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 553
Score = 270 bits (136), Expect = 2e-070
Identities = 312/371 (84%), Gaps = 6/371 (1%)
Strand = Plus / Plus
Query: 313 aattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaactatctgaag 372
||||| || ||||||||||||||||| |||||||| || ||||||||||| || |||
Sbjct: 1 aattctaattggctttacatcgtcccgacggggatgtatggatgtgtgaactacctcaag 60
Query: 373 cacaagtatggaaatccaacagttttcataaccgagaacggaatggatcagccaggaaac 432
| |||||||| |||||||| || | ||| |||||||| |||||||||||||| ||||||
Sbjct: 61 gagaagtatgggaatccaactgtctacattaccgagaatggaatggatcagcctggaaac 120
Query: 433 ttgactcgtggccagtacctgcacgacaccacaagggtgcaattctacaaaggctacctc 492
||||| |||| ||||||||||| ||| |||||||||||| ||||||| | ||||| |
Sbjct: 121 ttgacccgtgaccagtacctgcgcgatgccacaagggtgcggttctacagaagctacatt 180
Query: 493 gctgagctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtct 552
| |||||| |||||||| ||| | ||||| ||||||||||||||||||| ||||||
Sbjct: 181 ggccagctgaaaaaagccatagatcagggcgcaaacgtggctggctacttcgcctggtct 240
Query: 553 ctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtc 612
||||| |||||||||||||||| |||||| ||| ||||||||||||| |||||||||||
Sbjct: 241 ctccttgacaacttcgagtggctgtcaggatactcgtccaagtttggcatcgtctacgtt 300
Query: 613 gacttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagac 672
||||||| || ||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 301 gacttcaatac------gctcgaacggcaccccaaggcgtcggcctactggttcagggac 354
Query: 673 atgctccagaa 683
||||| |||||
Sbjct: 355 atgcttcagaa 365
>gb|BG412484.1|BG412484 OV2_34_H07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 654
Score = 268 bits (135), Expect = 8e-070
Identities = 305/362 (84%), Gaps = 6/362 (1%)
Strand = Plus / Plus
Query: 322 tggctttacatcgtcccagaagggatgtacggttgtgtgaactatctgaagcacaagtat 381
||||||||||||||||| |||||||| || ||||||||||| || ||| | ||||||
Sbjct: 8 tggctttacatcgtcccgacggggatgtatggatgtgtgaactacctcaaggagaagtat 67
Query: 382 ggaaatccaacagttttcataaccgagaacggaatggatcagccaggaaacttgactcgt 441
|| |||||||| || | ||| |||||||| |||||||||||||| ||||||||||| |||
Sbjct: 68 gggaatccaactgtctacattaccgagaatggaatggatcagcctggaaacttgacccgt 127
Query: 442 ggccagtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctg 501
| ||||||||||| ||| |||||||||||| ||||||| | ||||| | | |||||
Sbjct: 128 gaccagtacctgcgcgatgccacaagggtgcggttctacagaagctacattggccagctg 187
Query: 502 aggaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgac 561
| |||||||| ||| | ||||| ||||||||||||||||||| ||||||||||| |||
Sbjct: 188 aaaaaagccatagatcagggcgcaaacgtggctggctacttcgcctggtctctccttgac 247
Query: 562 aacttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagc 621
||||||||||||| |||||| ||| ||||||||||||| ||||||||||| |||||||
Sbjct: 248 aacttcgagtggctgtcaggatactcgtccaagtttggcatcgtctacgttgacttcaat 307
Query: 622 acgcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgctccag 681
|| ||||||||| |||||||||||||| |||||||||||||| |||||||| |||
Sbjct: 308 ac------gctcgaacggcaccccaaggcgtcggcctactggttcagggacatgcttcag 361
Query: 682 aa 683
||
Sbjct: 362 aa 363
>gb|BI074347.1|BI074347 IP1_14_E12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 576
Score = 268 bits (135), Expect = 8e-070
Identities = 305/362 (84%), Gaps = 6/362 (1%)
Strand = Plus / Plus
Query: 322 tggctttacatcgtcccagaagggatgtacggttgtgtgaactatctgaagcacaagtat 381
||||||||||||||||| |||||||| || ||||||||||| || ||| | ||||||
Sbjct: 2 tggctttacatcgtcccgacggggatgtatggatgtgtgaactacctcaaggagaagtat 61
Query: 382 ggaaatccaacagttttcataaccgagaacggaatggatcagccaggaaacttgactcgt 441
|| |||||||| || | ||| |||||||| |||||||||||||| ||||||||||| |||
Sbjct: 62 gggaatccaactgtctacattaccgagaatggaatggatcagcctggaaacttgacccgt 121
Query: 442 ggccagtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctg 501
| ||||||||||| ||| |||||||||||| ||||||| | ||||| | | |||||
Sbjct: 122 gaccagtacctgcgcgatgccacaagggtgcggttctacagaagctacattggccagctg 181
Query: 502 aggaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgac 561
| |||||||| ||| | ||||| ||||||||||||||||||| ||||||||||| |||
Sbjct: 182 aaaaaagccatagatcagggcgcaaacgtggctggctacttcgcctggtctctccttgac 241
Query: 562 aacttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagc 621
||||||||||||| |||||| ||| ||||||||||||| ||||||||||| |||||||
Sbjct: 242 aacttcgagtggctgtcaggatactcgtccaagtttggcatcgtctacgttgacttcaat 301
Query: 622 acgcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgctccag 681
|| ||||||||| |||||||||||||| |||||||||||||| |||||||| |||
Sbjct: 302 ac------gctcgaacggcaccccaaggcgtcggcctactggttcagggacatgcttcag 355
Query: 682 aa 683
||
Sbjct: 356 aa 357
>gb|BI075107.1|BI075107 IP1_19_F12.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 592
Score = 268 bits (135), Expect = 8e-070
Identities = 305/362 (84%), Gaps = 6/362 (1%)
Strand = Plus / Plus
Query: 322 tggctttacatcgtcccagaagggatgtacggttgtgtgaactatctgaagcacaagtat 381
||||||||||||||||| |||||||| || ||||||||||| || ||| | ||||||
Sbjct: 8 tggctttacatcgtcccgacggggatgtatggatgtgtgaactacctcaaggagaagtat 67
Query: 382 ggaaatccaacagttttcataaccgagaacggaatggatcagccaggaaacttgactcgt 441
|| |||||||| || | ||| |||||||| |||||||||||||| ||||||||||| |||
Sbjct: 68 gggaatccaactgtctacattaccgagaatggaatggatcagcctggaaacttgacccgt 127
Query: 442 ggccagtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctg 501
| ||||||||||| ||| |||||||||||| ||||||| | ||||| | | |||||
Sbjct: 128 gaccagtacctgcgcgatgccacaagggtgcggttctacagaagctacattggccagctg 187
Query: 502 aggaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgac 561
| |||||||| ||| | ||||| ||||||||||||||||||| ||||||||||| |||
Sbjct: 188 aaaaaagccatagatcagggcgcaaacgtggctggctacttcgcctggtctctccttgac 247
Query: 562 aacttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagc 621
||||||||||||| |||||| ||| ||||||||||||| ||||||||||| |||||||
Sbjct: 248 aacttcgagtggctgtcaggatactcgtccaagtttggcatcgtctacgttgacttcaat 307
Query: 622 acgcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgctccag 681
|| ||||||||| |||||||||||||| |||||||||||||| |||||||| |||
Sbjct: 308 ac------gctcgaacggcaccccaaggcgtcggcctactggttcagggacatgcttcag 361
Query: 682 aa 683
||
Sbjct: 362 aa 363
>gb|BG356885.1|BG356885 OV2_11_C02.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 545
Score = 262 bits (132), Expect = 5e-068
Identities = 302/359 (84%), Gaps = 6/359 (1%)
Strand = Plus / Plus
Query: 325 ctttacatcgtcccagaagggatgtacggttgtgtgaactatctgaagcacaagtatgga 384
|||||||||||||| |||||||| || ||||||||||| || ||| | ||||||||
Sbjct: 1 ctttacatcgtcccgacggggatgtatggatgtgtgaactacctcaaggagaagtatggg 60
Query: 385 aatccaacagttttcataaccgagaacggaatggatcagccaggaaacttgactcgtggc 444
|||||||| || | ||| |||||||| |||||||||||||| ||||||||||| |||| |
Sbjct: 61 aatccaactgtctacattaccgagaatggaatggatcagcctggaaacttgacccgtgac 120
Query: 445 cagtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgagg 504
|||||||||| ||| |||||||||||| ||||||| | ||||| | | ||||||
Sbjct: 121 cagtacctgcgcgatgccacaagggtgcggttctacagaagctacattggccagctgaaa 180
Query: 505 aaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaac 564
|||||||| ||| | ||||| ||||||||||||||||||| ||||||||||| ||||||
Sbjct: 181 aaagccatagatcagggcgcaaacgtggctggctacttcgcctggtctctccttgacaac 240
Query: 565 ttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcacg 624
|||||||||| |||||| ||| ||||||||||||| ||||||||||| ||||||| ||
Sbjct: 241 ttcgagtggctgtcaggatactcgtccaagtttggcatcgtctacgttgacttcaatac- 299
Query: 625 cccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgctccagaa 683
||||||||| |||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 300 -----gctcgaacggcaccccaaggcgtcggcctactggttcagggacatgcttcagaa 353
>gb|BI075510.1|BI075510 IP1_21_D08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 539
Score = 258 bits (130), Expect = 7e-067
Identities = 300/357 (84%), Gaps = 6/357 (1%)
Strand = Plus / Plus
Query: 327 ttacatcgtcccagaagggatgtacggttgtgtgaactatctgaagcacaagtatggaaa 386
|||||||||||| |||||||| || ||||||||||| || ||| | |||||||| ||
Sbjct: 1 ttacatcgtcccgacggggatgtatggatgtgtgaactacctcaaggagaagtatgggaa 60
Query: 387 tccaacagttttcataaccgagaacggaatggatcagccaggaaacttgactcgtggcca 446
|||||| || | ||| |||||||| |||||||||||||| ||||||||||| |||| |||
Sbjct: 61 tccaactgtctacattaccgagaatggaatggatcagcctggaaacttgacccgtgacca 120
Query: 447 gtacctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgaggaa 506
|||||||| ||| |||||||||||| ||||||| | ||||| | | |||||| ||
Sbjct: 121 gtacctgcgcgatgccacaagggtgcggttctacagaagctacattggccagctgaaaaa 180
Query: 507 agccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaactt 566
|||||| ||| | ||||| ||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 181 agccatagatcagggcgcaaacgtggctggctacttcgcctggtctctccttgacaactt 240
Query: 567 cgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcacgcc 626
|||||||| |||||| ||| ||||||||||||| ||||||||||| ||||||| ||
Sbjct: 241 cgagtggctgtcaggatactcgtccaagtttggcatcgtctacgttgacttcaatac--- 297
Query: 627 caagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgctccagaa 683
||||||||| |||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 298 ---gctcgaacggcaccccaaggcgtcggcctactggttcagggacatgcttcagaa 351
>gb|BG050964.1|BG050964 FM1_54_E04.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 447
Score = 238 bits (120), Expect = 7e-061
Identities = 254/296 (85%), Gaps = 2/296 (0%)
Strand = Plus / Plus
Query: 1 aaactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggtt 60
||||||| | || ||||| ||||| || |||||||| ||||| ||||| |||| |||||
Sbjct: 149 aaactcacctgatgaccaggcagcagcccaaagagctagggacttccacattggctggtt 208
Query: 61 tgctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaagaga 120
|| ||||||||| | ||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 209 tgttgatccattga-taaatggacattatccacaaataatgcaagatcttgtgaaagaga 267
Query: 121 ggctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggattacatt 180
|||| ||| | ||| ||||| ||||||||||| |||||||||||||| || || ||||||
Sbjct: 268 ggctaccc-aggttcactcctgagcaagctaaattggtcaagggctcggcagactacatt 326
Query: 181 gggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaagcct 240
|| |||||| ||||||| | |||||| ||||||| ||||||||||||||||||| |||
Sbjct: 327 ggtatcaatgaatacacatccagctacatgaagggacagaaactgctccagcagacgccc 386
Query: 241 actagctactcagctgattggcaggttcaatatgttttagaacggaacggcaaacc 296
| ||||||||| || ||||||||||| ||||||||||| | ||| || ||||||||
Sbjct: 387 agtagctactctgccgattggcaggtccaatatgtttttgcacgcaatggcaaacc 442
>gb|BI075368.1|BI075368 IP1_19_F12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 620
Score = 224 bits (113), Expect = 1e-056
Identities = 217/249 (87%), Gaps = 2/249 (0%)
Strand = Plus / Plus
Query: 29 caaagagcaagggatttccatgttggttggtttgctgatccattaaataaatggacatta 88
|||||||| ||||| ||||| |||| ||||||| ||||||||| | |||||||||||||
Sbjct: 13 caaagagctagggacttccacattggctggtttgttgatccattga-taaatggacatta 71
Query: 89 tccacagataatgcaagatattgtgaaagagaggctgccccaagtttactccggagcaag 148
|||||| |||||||||||| |||||||||||||||| ||| | ||| ||||| |||||||
Sbjct: 72 tccacaaataatgcaagatcttgtgaaagagaggctaccc-aggttcactcctgagcaag 130
Query: 149 ctaagttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagctacg 208
|||| |||||||||||||| || || |||||||| |||||| ||||||| | ||||||
Sbjct: 131 ctaaattggtcaagggctcggcagactacattggtatcaatgaatacacatccagctaca 190
Query: 209 tgaagggccagaaactgctccagcagaagcctactagctactcagctgattggcaggttc 268
||||||| ||||||||||||||||||| ||| | ||||||||| || ||||||||||| |
Sbjct: 191 tgaagggacagaaactgctccagcagacgcccagtagctactctgccgattggcaggtcc 250
Query: 269 aatatgttt 277
|||||||||
Sbjct: 251 aatatgttt 259
Score = 65.9 bits (33), Expect = 6e-009
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 308 aggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaactatc 367
|||||||||| || ||||||||||||||||| |||||||| || ||||||||||| |
Sbjct: 522 aggcgaattctaattggctttacatcgtcccgacggggatgtatggatgtgtgaactacc 581
Query: 368 tgaagcacaagtatggaaatccaac 392
| ||| | |||||||| ||||||||
Sbjct: 582 tcaaggagaagtatgggaatccaac 606
>gb|BG412485.1|BG412485 OV2_34_H08.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 345
Score = 218 bits (110), Expect = 6e-055
Identities = 274/329 (83%), Gaps = 6/329 (1%)
Strand = Plus / Plus
Query: 355 tgtgtgaactatctgaagcacaagtatggaaatccaacagttttcataaccgagaacgga 414
||||||||||| || ||| | |||||||| |||||||| || | ||| |||||||| |||
Sbjct: 8 tgtgtgaactacctcaaggagaagtatgggaatccaactgtctacattaccgagaatgga 67
Query: 415 atggatcagccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtgcaa 474
||||||||||| ||||||||||| |||| ||||||||||| ||| ||||||||||||
Sbjct: 68 atggatcagcctggaaacttgacccgtgaccagtacctgcgcgatgccacaagggtgcgg 127
Query: 475 ttctacaaaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtggct 534
||||||| | ||||| | | |||||| |||||||| ||| | ||||| ||||||||
Sbjct: 128 ttctacagaagctacattggccagctgaaaaaagccatagatcagggcgcaaacgtggct 187
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
|||||||||| ||||||||||| |||||||||||||| | |||||| ||| ||||||||
Sbjct: 188 ggctacttcgtctggtctctccttgacaacttcgagtgcctgtcaggatactcgtccaag 247
Query: 595 tttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtca 654
||||| || |||||||| ||||||| || ||||||||| ||||||||||||||
Sbjct: 248 tttggcatagtctacgttgacttcaatac------gctcgaacggcaccccaaggcgtcg 301
Query: 655 gcctactggttcagagacatgctccagaa 683
|| ||||||||||| |||||||| |||||
Sbjct: 302 gcgtactggttcagggacatgcttcagaa 330
>gb|CW241422.1|CW241422 104_700_11218762_148_37541_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218762, DNA
sequence
Length = 644
Score = 216 bits (109), Expect = 3e-054
Identities = 231/272 (84%), Gaps = 6/272 (2%)
Strand = Plus / Minus
Query: 412 ggaatggatcagccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtg 471
|||||||||||||| ||||||||||| |||| ||||||||||| ||| |||||||||||
Sbjct: 325 ggaatggatcagcctggaaacttgacccgtgaccagtacctgcgcgatgccacaagggtg 266
Query: 472 caattctacaaaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtg 531
| ||||||| | ||||| | | |||||| |||||||| ||| | ||||| |||||
Sbjct: 265 cggttctacagaagctacattggccagctgaaaaaagccatagatcagggcgcaaacgtg 206
Query: 532 gctggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtcc 591
|||||||||||||| ||||||||||| |||||||||||||||| |||||| ||| |||||
Sbjct: 205 gctggctacttcgcctggtctctccttgacaacttcgagtggctgtcaggatactcgtcc 146
Query: 592 aagtttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcg 651
|||||||| ||||||||||| ||||||| || ||||||||| ||||||||||||
Sbjct: 145 aagtttggcatcgtctacgttgacttcaatac------gctcgaacggcaccccaaggcg 92
Query: 652 tcagcctactggttcagagacatgctccagaa 683
|| |||||||||||||| |||||||| |||||
Sbjct: 91 tcggcctactggttcagggacatgcttcagaa 60
Score = 69.9 bits (35), Expect = 4e-010
Identities = 86/103 (83%)
Strand = Plus / Minus
Query: 308 aggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaactatc 367
|||||||||| || ||||||||||||||||| |||||||| || ||||||||||| |
Sbjct: 525 aggcgaattctaattggctttacatcgtcccgacggggatgtatggatgtgtgaactacc 466
Query: 368 tgaagcacaagtatggaaatccaacagttttcataaccgagaa 410
| ||| | |||||||| |||||||| || | ||| ||||||||
Sbjct: 465 tcaaggagaagtatgggaatccaactgtctacattaccgagaa 423
>gb|BF481302.1|BF481302 FM1_18_C08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 442
Score = 216 bits (109), Expect = 3e-054
Identities = 237/280 (84%), Gaps = 6/280 (2%)
Strand = Plus / Plus
Query: 404 ccgagaacggaatggatcagccaggaaacttgactcgtggccagtacctgcacgacacca 463
||||||| |||||||||||||| ||||||||||| |||| |||||||||| ||| |||
Sbjct: 1 ccgagaatggaatggatcagcctggaaacttgacccgtgatcagtacctgcgcgatgcca 60
Query: 464 caagggtgcaattctacaaaggctacctcgctgagctgaggaaagccatcgatgacggcg 523
||||||||| ||||||| | ||||| | | |||||| |||||||| ||| | ||||
Sbjct: 61 caagggtgcggttctacagaagctacattggccagctgaaaaaagccatagatcagggcg 120
Query: 524 ccgacgtggctggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggtt 583
| ||||||||||||||||||| ||||||||||| |||||||||||||||| |||||| |
Sbjct: 121 caaacgtggctggctacttcgcctggtctctccttgacaacttcgagtggctgtcaggat 180
Query: 584 acacgtccaagtttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacacc 643
|| ||||||||||||| ||||||||||| ||||||| || ||||||||| ||||
Sbjct: 181 actcgtccaagtttggcatcgtctacgttgacttcaatac------gctcgaacggcacc 234
Query: 644 ccaaggcgtcagcctactggttcagagacatgctccagaa 683
|||||||||| |||||||||||||| |||||||| |||||
Sbjct: 235 ccaaggcgtcggcctactggttcagggacatgcttcagaa 274
>gb|BG559003.1|BG559003 RHIZ2_53_D04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 427
Score = 214 bits (108), Expect = 1e-053
Identities = 248/295 (84%), Gaps = 6/295 (2%)
Strand = Plus / Plus
Query: 389 caacagttttcataaccgagaacggaatggatcagccaggaaacttgactcgtggccagt 448
|||| |||| ||| |||||||| |||||||||||||| ||||||||||| |||| ||||
Sbjct: 1 caactgtttacattaccgagaatggaatggatcagcctggaaacttgacccgtgatcagt 60
Query: 449 acctgcacgacaccacaagggtgcaattctacaaaggctacctcgctgagctgaggaaag 508
|||||| || |||||||||||| ||||||| | ||||| | | |||||| ||||
Sbjct: 61 acctgcgtgatgccacaagggtgcggttctacagaagctacattggccagctgaaaaaag 120
Query: 509 ccatcgatgacggcgccgacgtggctggctacttcgcttggtctctcctcgacaacttcg 568
|||| ||| | ||||| ||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 121 ccatagatcagggcgcaaacgtggctggctacttcgcctggtctctccttgacaacttcg 180
Query: 569 agtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcacgccca 628
|||||| |||||| ||| ||||||||||||| ||||||||||| ||||||| ||
Sbjct: 181 agtggctgtcaggatactcgtccaagtttggcatcgtctacgttgacttcaatac----- 235
Query: 629 agctcgaacgacaccccaaggcgtcagcctactggttcagagacatgctccagaa 683
||||||||| |||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 236 -gctcgaacggcaccccaaggcgtcggcctactggttcagggacatgcttcagaa 289
>gb|BZ367054.1|BZ367054 id02b04.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone id02b04 5', DNA sequence
Length = 617
Score = 208 bits (105), Expect = 6e-052
Identities = 194/221 (87%), Gaps = 2/221 (0%)
Strand = Plus / Plus
Query: 57 ggtttgctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaa 116
|||||| ||||||||| | ||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 160 ggtttgttgatccattga-taaatggacattatccacaaataatgcaagatcttgtgaaa 218
Query: 117 gagaggctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggatta 176
|||||||| ||| | ||| ||||| ||||||||||| |||||||||||||| || || ||
Sbjct: 219 gagaggctaccc-aggttcactcctgagcaagctaaattggtcaagggctcggcagacta 277
Query: 177 cattgggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaa 236
|||||| |||||| ||||||| | |||||| ||||||| |||||||||||||||||||
Sbjct: 278 cattggtatcaatgaatacacatccagctacatgaagggacagaaactgctccagcagac 337
Query: 237 gcctactagctactcagctgattggcaggttcaatatgttt 277
||| | ||||||||| || ||||||||||| ||||||||||
Sbjct: 338 gcccagtagctactctgccgattggcaggtccaatatgttt 378
Score = 40.1 bits (20), Expect = 0.33
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 1 aaactcaaccgaagaccaagcagcggctcaaagagcaagggatttcca 48
||||||| | || ||||||||||| || |||||||| ||||| |||||
Sbjct: 12 aaactcacctgatgaccaagcagcagcccaaagagctagggacttcca 59
>gb|CL165780.1|CL165780 104_361_10808896_114_31820_112 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808896, DNA
sequence
Length = 682
Score = 208 bits (105), Expect = 6e-052
Identities = 194/221 (87%), Gaps = 2/221 (0%)
Strand = Plus / Plus
Query: 57 ggtttgctgatccattaaataaatggacattatccacagataatgcaagatattgtgaaa 116
|||||| ||||||||| | ||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 140 ggtttgttgatccattga-taaatggacattatccacaaataatgcaagatcttgtgaaa 198
Query: 117 gagaggctgccccaagtttactccggagcaagctaagttggtcaagggctcagcggatta 176
|||||||| ||| | ||| ||||| ||||||||||| |||||||||||||| || || ||
Sbjct: 199 gagaggctaccc-aggttcactcctgagcaagctaaattggtcaagggctcggcagacta 257
Query: 177 cattgggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcagaa 236
|||||| |||||| ||||||| | |||||| ||||||| |||||||||||||||||||
Sbjct: 258 cattggtatcaatgaatacacatccagctacatgaagggacagaaactgctccagcagac 317
Query: 237 gcctactagctactcagctgattggcaggttcaatatgttt 277
||| | ||||||||| || ||||||||||| ||||||||||
Sbjct: 318 gcccagtagctactctgccgattggcaggtccaatatgttt 358
Score = 52.0 bits (26), Expect = 9e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 308 aggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaacta 365
|||||||||| || ||||||||||||||||| |||||||| || |||||||||||
Sbjct: 621 aggcgaattctaattggctttacatcgtcccgacggggatgtatggatgtgtgaacta 678
>gb|BZ367053.1|BZ367053 id02b04.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone id02b04 5', DNA sequence
Length = 619
Score = 206 bits (104), Expect = 2e-051
Identities = 223/263 (84%), Gaps = 6/263 (2%)
Strand = Plus / Minus
Query: 412 ggaatggatcagccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtg 471
|||||||||||||| ||||||||||| |||| ||||||||||| ||| |||||||||||
Sbjct: 278 ggaatggatcagcctggaaacttgacccgtgaccagtacctgcgcgatgccacaagggtg 219
Query: 472 caattctacaaaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtg 531
| ||||||| | ||||| | | |||||| |||||||| ||| | ||||| |||||
Sbjct: 218 cggttctacagaagctacattggccagctgaaaaaagccatagatcagggcgcaaacgtg 159
Query: 532 gctggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtcc 591
|||||||||||||| ||||||||||| |||||||||||||||| |||||| ||| |||||
Sbjct: 158 gctggctacttcgcctggtctctccttgacaacttcgagtggctgtcaggatactcgtcc 99
Query: 592 aagtttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcg 651
|||||||| ||||||||||| ||||||| || ||||||||| ||||||||||||
Sbjct: 98 aagtttggcatcgtctacgttgacttcaatac------gctcgaacggcaccccaaggcg 45
Query: 652 tcagcctactggttcagagacat 674
|| |||||||||||||| |||||
Sbjct: 44 tcggcctactggttcagggacat 22
Score = 69.9 bits (35), Expect = 4e-010
Identities = 86/103 (83%)
Strand = Plus / Minus
Query: 308 aggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaactatc 367
|||||||||| || ||||||||||||||||| |||||||| || ||||||||||| |
Sbjct: 478 aggcgaattctaattggctttacatcgtcccgacggggatgtatggatgtgtgaactacc 419
Query: 368 tgaagcacaagtatggaaatccaacagttttcataaccgagaa 410
| ||| | |||||||| |||||||| || | ||| ||||||||
Sbjct: 418 tcaaggagaagtatgggaatccaactgtctacattaccgagaa 376
>gb|CW092082.1|CW092082 104_454_10998932_116_33041_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998932, DNA
sequence
Length = 670
Score = 178 bits (90), Expect = 5e-043
Identities = 177/206 (85%)
Strand = Plus / Plus
Query: 412 ggaatggatcagccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtg 471
|||||||||||||| ||||||||||| |||| ||||||||||| ||| |||||||||||
Sbjct: 436 ggaatggatcagcctggaaacttgacccgtgaccagtacctgcgcgatgccacaagggtg 495
Query: 472 caattctacaaaggctacctcgctgagctgaggaaagccatcgatgacggcgccgacgtg 531
| ||||||| | ||||| | | |||||| |||||||| ||| | ||||| |||||
Sbjct: 496 cggttctacagaagctacattggccagctgaaaaaagccatagatcagggcgcaaacgtg 555
Query: 532 gctggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtcc 591
|||||||||||||| ||||||||||| |||||||||||||||| |||||| ||| |||||
Sbjct: 556 gctggctacttcgcctggtctctccttgacaacttcgagtggctgtcaggatactcgtcc 615
Query: 592 aagtttggaatcgtctacgtcgactt 617
|||||||| ||||||||||| |||||
Sbjct: 616 aagtttggcatcgtctacgttgactt 641
Score = 69.9 bits (35), Expect = 4e-010
Identities = 86/103 (83%)
Strand = Plus / Plus
Query: 308 aggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaactatc 367
|||||||||| || ||||||||||||||||| |||||||| || ||||||||||| |
Sbjct: 236 aggcgaattctaattggctttacatcgtcccgacggggatgtatggatgtgtgaactacc 295
Query: 368 tgaagcacaagtatggaaatccaacagttttcataaccgagaa 410
| ||| | |||||||| |||||||| || | ||| ||||||||
Sbjct: 296 tcaaggagaagtatgggaatccaactgtctacattaccgagaa 338
>gb|BI097917.1|BI097917 IP1_29_F08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 510
Score = 167 bits (84), Expect = 2e-039
Identities = 188/223 (84%), Gaps = 6/223 (2%)
Strand = Plus / Plus
Query: 461 ccacaagggtgcaattctacaaaggctacctcgctgagctgaggaaagccatcgatgacg 520
|||||||||||| ||||||| | ||||| | | |||||| |||||||| ||| | |
Sbjct: 7 ccacaagggtgcggttctacagaagctacattggccagctgaaaaaagccatagatcagg 66
Query: 521 gcgccgacgtggctggctacttcgcttggtctctcctcgacaacttcgagtggcagtcag 580
|||| ||||||||||||||||||| ||||||||||| |||||||||||||||| |||||
Sbjct: 67 gcgcaaacgtggctggctacttcgcctggtctctccttgacaacttcgagtggctgtcag 126
Query: 581 gttacacgtccaagtttggaatcgtctacgtcgacttcagcacgcccaagctcgaacgac 640
| ||| ||||||||||||| ||||||||||| ||||||| || ||||||||| |
Sbjct: 127 gatactcgtccaagtttggcatcgtctacgttgacttcaatac------gctcgaacggc 180
Query: 641 accccaaggcgtcagcctactggttcagagacatgctccagaa 683
||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 181 accccaaggcgtcggcctactggttcagggacatgcttcagaa 223
>gb|BG051535.1|BG051535 FM1_57_G01.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 143
Score = 123 bits (62), Expect = 3e-026
Identities = 118/137 (86%), Gaps = 6/137 (4%)
Strand = Plus / Plus
Query: 547 tggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaatcgtc 606
||||||||||| |||||||||||||||| |||||| ||| ||||||||||||| || |||
Sbjct: 1 tggtctctccttgacaacttcgagtggctgtcaggatactcgtccaagtttggcatagtc 60
Query: 607 tacgtcgacttcagcacgcccaagctcgaacgacaccccaaggcgtcagcctactggttc 666
||||| ||||||| || ||||||||| |||||||||||||| ||||||||||||
Sbjct: 61 tacgttgacttcaatac------gctcgaacggcaccccaaggcgtcggcctactggttc 114
Query: 667 agagacatgctccagaa 683
|| |||||||| |||||
Sbjct: 115 agggacatgcttcagaa 131
>gb|CL165781.1|CL165781 104_361_10808896_116_31821_112 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10808896, DNA
sequence
Length = 574
Score = 119 bits (60), Expect = 4e-025
Identities = 108/124 (87%)
Strand = Plus / Minus
Query: 154 ttggtcaagggctcagcggattacattgggatcaatcaatacaccgctagctacgtgaag 213
|||||||||||||| || || |||||||| |||||| ||||||| | |||||| |||||
Sbjct: 573 ttggtcaagggctcggcagactacattggtatcaatgaatacacatccagctacatgaag 514
Query: 214 ggccagaaactgctccagcagaagcctactagctactcagctgattggcaggttcaatat 273
|| ||||||||||||||||||| ||| | ||||||||| || ||||||||||| ||||||
Sbjct: 513 ggacagaaactgctccagcagacgcccagtagctactctgccgattggcaggtccaatat 454
Query: 274 gttt 277
||||
Sbjct: 453 gttt 450
Score = 69.9 bits (35), Expect = 4e-010
Identities = 86/103 (83%)
Strand = Plus / Minus
Query: 308 aggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaactatc 367
|||||||||| || ||||||||||||||||| |||||||| || ||||||||||| |
Sbjct: 187 aggcgaattctaattggctttacatcgtcccgacggggatgtatggatgtgtgaactacc 128
Query: 368 tgaagcacaagtatggaaatccaacagttttcataaccgagaa 410
| ||| | |||||||| |||||||| || | ||| ||||||||
Sbjct: 127 tcaaggagaagtatgggaatccaactgtctacattaccgagaa 85
>gb|BF587914.1|BF587914 FM1_34_D09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 584
Score = 119 bits (60), Expect = 4e-025
Identities = 108/124 (87%)
Strand = Plus / Plus
Query: 496 gagctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctc 555
||||||| ||||| ||||| |||||||| |||||| ||||||||||| ||||| |||
Sbjct: 126 gagctgaagaaagggatcgacgacggcgcaaacgtggtgggctacttcgcgtggtccctc 185
Query: 556 ctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgac 615
|| |||||||||||||||| ||| || |||||||||||||| || |||||||||||||||
Sbjct: 186 ctggacaacttcgagtggctgtcgggctacacgtccaagttcggcatcgtctacgtcgac 245
Query: 616 ttca 619
||||
Sbjct: 246 ttca 249
>gb|CD234207.1|CD234207 SS1_26_D01.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_26_D01_A012 3', mRNA sequence
Length = 552
Score = 119 bits (60), Expect = 4e-025
Identities = 108/124 (87%)
Strand = Plus / Plus
Query: 496 gagctgaggaaagccatcgatgacggcgccgacgtggctggctacttcgcttggtctctc 555
||||||| ||||| ||||| |||||||| |||||| ||||||||||| ||||| |||
Sbjct: 90 gagctgaagaaagggatcgacgacggcgcaaacgtggtgggctacttcgcgtggtccctc 149
Query: 556 ctcgacaacttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgac 615
|| |||||||||||||||| ||| || |||||||||||||| || |||||||||||||||
Sbjct: 150 ctggacaacttcgagtggctgtcgggctacacgtccaagttcggcatcgtctacgtcgac 209
Query: 616 ttca 619
||||
Sbjct: 210 ttca 213
>gb|BG558112.1|BG558112 RHIZ2_67_A03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 330
Score = 109 bits (55), Expect = 4e-022
Identities = 105/122 (86%), Gaps = 6/122 (4%)
Strand = Plus / Plus
Query: 562 aacttcgagtggcagtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagc 621
||||||||||||| |||||| ||| ||||||||||||| ||||||||||| |||||||
Sbjct: 1 aacttcgagtggctgtcaggatactcgtccaagtttggcatcgtctacgttgacttcaat 60
Query: 622 acgcccaagctcgaacgacaccccaaggcgtcagcctactggttcagagacatgctccag 681
|||| ||||||| |||||||||||||| |||||||||||||| |||||||| |||
Sbjct: 61 acgc------tcgaacggcaccccaaggcgtcggcctactggttcagggacatgcttcag 114
Query: 682 aa 683
||
Sbjct: 115 aa 116
>gb|CW304526.1|CW304526 104_789_11465829_116_35701_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465829, DNA
sequence
Length = 610
Score = 99.6 bits (50), Expect = 4e-019
Identities = 89/102 (87%)
Strand = Plus / Plus
Query: 176 acattgggatcaatcaatacaccgctagctacgtgaagggccagaaactgctccagcaga 235
||||||| |||||| ||||||| | |||||| ||||||| |||||||||||||||||||
Sbjct: 1 acattggtatcaatgaatacacatccagctacatgaagggacagaaactgctccagcaga 60
Query: 236 agcctactagctactcagctgattggcaggttcaatatgttt 277
||| | ||||||||| || ||||||||||| ||||||||||
Sbjct: 61 cgcccagtagctactctgccgattggcaggtccaatatgttt 102
Score = 69.9 bits (35), Expect = 4e-010
Identities = 86/103 (83%)
Strand = Plus / Plus
Query: 308 aggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaactatc 367
|||||||||| || ||||||||||||||||| |||||||| || ||||||||||| |
Sbjct: 365 aggcgaattctaattggctttacatcgtcccgacggggatgtatggatgtgtgaactacc 424
Query: 368 tgaagcacaagtatggaaatccaacagttttcataaccgagaa 410
| ||| | |||||||| |||||||| || | ||| ||||||||
Sbjct: 425 tcaaggagaagtatgggaatccaactgtctacattaccgagaa 467
Score = 61.9 bits (31), Expect = 9e-008
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 412 ggaatggatcagccaggaaacttgactcgtggccagtacctgc 454
|||||||||||||| ||||||||||| |||| |||||||||||
Sbjct: 565 ggaatggatcagcctggaaacttgacccgtgaccagtacctgc 607
>gb|AI724868.1|AI724868 RHIZ1_30_D02.y3_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 396
Score = 89.7 bits (45), Expect = 4e-016
Identities = 92/108 (85%), Gaps = 6/108 (5%)
Strand = Plus / Plus
Query: 576 gtcaggttacacgtccaagtttggaatcgtctacgtcgacttcagcacgcccaagctcga 635
|||||| ||| ||||||||||||| ||||||||||| ||||||| |||| ||||
Sbjct: 5 gtcaggatactcgtccaagtttggcatcgtctacgttgacttcaatacgc------tcga 58
Query: 636 acgacaccccaaggcgtcagcctactggttcagagacatgctccagaa 683
||| |||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 59 acggcaccccaaggcgtcggcctactggttcagggacatgcttcagaa 106
>gb|CW116495.1|CW116495 104_492_11107149_116_34608_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11107149, DNA
sequence
Length = 436
Score = 75.8 bits (38), Expect = 6e-012
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 412 ggaatggatcagccaggaaacttgactcgtggccagtacctgcacgacaccacaagggtg 471
|||||||||||||| ||||||||||| |||| ||||||||||| ||| |||||||||||
Sbjct: 352 ggaatggatcagcctggaaacttgacccgtgaccagtacctgcgcgatgccacaagggtg 411
Query: 472 caattctaca 481
| |||||||
Sbjct: 412 cggttctaca 421
Score = 61.9 bits (31), Expect = 9e-008
Identities = 85/103 (82%)
Strand = Plus / Plus
Query: 308 aggcgaattcaaagtggctttacatcgtcccagaagggatgtacggttgtgtgaactatc 367
|||||||||| || ||||||||||||||||| |||||||| || ||||||||||| |
Sbjct: 152 aggcgaattctaattggctttacatcgtcccgacggggatgtatggatgtgtgaactacc 211
Query: 368 tgaagcacaagtatggaaatccaacagttttcataaccgagaa 410
| || | |||||||| |||||||| || | ||| ||||||||
Sbjct: 212 tcgaggagaagtatgggaatccaactgtctacattaccgagaa 254
>gb|CW154736.1|CW154736 104_557_11145760_148_36357_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11145760, DNA
sequence
Length = 689
Score = 75.8 bits (38), Expect = 6e-012
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 630 gctcgaacgacaccccaaggcgtcagcctactggttcagagacatgctccagaa 683
||||||||| |||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 15 gctcgaacggcaccccaaggcgtcggcctactggttcagggacatgcttcagaa 68
>gb|CW299015.1|CW299015 104_781_11462882_148_35655_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462882, DNA
sequence
Length = 710
Score = 67.9 bits (34), Expect = 1e-009
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggt 59
|||||||||||||| |||||||| || ||||| || |||||||||||| |||||||||
Sbjct: 87 aactcaaccgaagatcaagcagcagcgcaaagggccagggatttccatattggttggt 144
Score = 54.0 bits (27), Expect = 2e-005
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 64 tgatccattaaataaatggacattatccacagataatgcaagatattgtgaaaga 118
||||||||||| |||||||||| |||||| ||| |||||| || |||||||||||
Sbjct: 232 tgatccattaa-taaatggacaatatccaaagacaatgcaggacattgtgaaaga 285
>gb|BF587276.1|BF587276 FM1_34_D09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 503
Score = 65.9 bits (33), Expect = 6e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 2 aactcaaccgaagaccaagcagcggctcaaagagcaagggatttccatgttggttggttt 61
|||||||| ||||| |||||||| || ||||| || ||||| |||||| |||||||||||
Sbjct: 430 aactcaactgaagatcaagcagcagcgcaaagggccagggacttccatattggttggttt 489
Query: 62 gctgatccattaa 74
|||||||||||
Sbjct: 490 cttgatccattaa 502
>gb|CW476625.1|CW476625 fsbb001f233j03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f233j03, DNA
sequence
Length = 571
Score = 58.0 bits (29), Expect = 1e-006
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| ||||| || |||||||||||||||||| || ||||||||| ||| |
Sbjct: 18 ggctacttcgcctggtccctgctcgacaacttcgagtggaagctgggttacacggccagg 77
Query: 595 tttggaatcgtctacgtcgacttca 619
|| || | ||||||||||| ||||
Sbjct: 78 ttcggcctggtctacgtcgatttca 102
>gb|AW923660.1|AW923660 DG1_57_B08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 389
Score = 58.0 bits (29), Expect = 1e-006
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtggcagtcaggttacacgtccaag 594
||||||||||| ||||| || |||||||||||||||||| || ||||||||| ||| |
Sbjct: 300 ggctacttcgcctggtccctgctcgacaacttcgagtggaaggtgggttacacggccagg 359
Query: 595 tttggaatcgtctacgtcgacttca 619
|| || | ||||||||||| ||||
Sbjct: 360 ttcggcctggtctacgtcgatttca 384
>gb|CN144836.1|CN144836 WOUND1_25_F02.b2_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_25_F02_A002 3', mRNA sequence
Length = 728
Score = 56.0 bits (28), Expect = 5e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 534 tggctacttcgcttggtctctcctcgacaacttcgagtgg 573
||||||||||| |||||||| ||||||||||||||||||
Sbjct: 447 tggctacttcgtgtggtctcttctcgacaacttcgagtgg 486
>gb|CW299014.1|CW299014 104_781_11462882_116_35659_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462882, DNA
sequence
Length = 662
Score = 54.0 bits (27), Expect = 2e-005
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Minus
Query: 64 tgatccattaaataaatggacattatccacagataatgcaagatattgtgaaaga 118
||||||||||| |||||||||| |||||| ||| |||||| || |||||||||||
Sbjct: 527 tgatccattaa-taaatggacaatatccaaagacaatgcaggacattgtgaaaga 474
Score = 40.1 bits (20), Expect = 0.33
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 12 aagaccaagcagcggctcaaagagcaagggatttccatgttggt 55
|||| |||||||| || ||||| || |||||||||||| |||||
Sbjct: 662 aagatcaagcagcagcgcaaagggccagggatttccatattggt 619
>gb|BE359792.1|BE359792 DG1_57_B08.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 374
Score = 54.0 bits (27), Expect = 2e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgagtgg 573
||||||||||| ||||| || ||||||||||||||||||
Sbjct: 301 ggctacttcgcctggtccctgctcgacaacttcgagtgg 339
>gb|BF586059.1|BF586059 FM1_26_B07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 590
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcga 569
|||||||||||||||||||| || |||||||||||
Sbjct: 181 ggctacttcgcttggtctctgctggacaacttcga 215
>gb|CW304527.1|CW304527 104_789_11465829_148_35705_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465829, DNA
sequence
Length = 562
Score = 52.0 bits (26), Expect = 9e-005
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 646 aaggcgtcagcctactggttcagagacatgctccagaa 683
|||||||| |||||||||||||| |||||||| |||||
Sbjct: 562 aaggcgtcggcctactggttcagggacatgcttcagaa 525
>gb|CW472326.1|CW472326 fsbb001f227d11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f227d11, DNA
sequence
Length = 449
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 535 ggctacttcgcttggtctctcctcgacaacttcgag 570
||||||||||| |||||||| || ||||||||||||
Sbjct: 315 ggctacttcgcgtggtctctgctggacaacttcgag 280
>gb|BG356442.1|BG356442 EM1_22_F02.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 356
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 538 tacttcgcttggtctctcctcgacaacttcgagtgg 573
|||||||| ||||| || ||||||||||||||||||
Sbjct: 293 tacttcgcctggtccctgctcgacaacttcgagtgg 328
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 192,932
Number of Sequences: 832831
Number of extensions: 192932
Number of successful extensions: 51575
Number of sequences better than 0.5: 102
Number of HSP's better than 0.5 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51289
Number of HSP's gapped (non-prelim): 228
length of query: 851
length of database: 491,359,669
effective HSP length: 20
effective length of query: 831
effective length of database: 474,703,049
effective search space: 394478233719
effective search space used: 394478233719
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)