BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3054736.2.1
(725 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD430969.1|CD430969 ETH1_6_D05.b1_A002 Ethylene-treated ... 670 0.0
gb|BE360608.1|BE360608 DG1_64_B12.g1_A002 Dark Grown 1 (DG1... 593 e-168
gb|CW261205.1|CW261205 104_728_11229383_116_35174_092 Sorgh... 206 2e-051
gb|CW261206.1|CW261206 104_728_11229383_148_35170_092 Sorgh... 46 0.004
gb|CD227650.1|CD227650 CCC1_53_H12.b1_A007 Callus culture/c... 40 0.28
>gb|CD430969.1|CD430969 ETH1_6_D05.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_D05_A002 3', mRNA sequence
Length = 748
Score = 670 bits (338), Expect = 0.0
Identities = 389/406 (95%)
Strand = Plus / Plus
Query: 1 cagttgtcaatgatccaaatttgaaatggtacgaaagttcttgggaactgttgggtaacg 60
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 32 cagttgtcaatgatccaaatatgaaatggtacgaaagttcttgggaacttttgggtaacg 91
Query: 61 agtacttcatgcatgcatctggttcactatatgctctttcttctgaggtggttgaagctc 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 agtacttcatgcatgcttctggttcactatatgctctttcttctgaggtggttgaagctc 151
Query: 121 tagctactgcaaagagtgatagcttaaggatgtttgattatgaagatgttacaatcggcg 180
|||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 152 tagctactacaaagagtgatagcttaaggatgtttgattacgaagatgttacagtcggcg 211
Query: 181 catggatgcttgctatgaatgtaaagcatgaagacaaccgagcaatgtgtgattcagtat 240
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 212 catggatgcttgctatgaatgtaaagcatgaagacaacagagcaatgtgtgattcaatat 271
Query: 241 gtacccctacctccatcgctgtatgggacagtaagaaatgctcaggtacttgtaacgtcg 300
| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||| | |
Sbjct: 272 gcactcctacctccattgctgtatgggacagtaagaaatgttcaggtacttgtaacatag 331
Query: 301 ctgacaaaataaagcagctccataacaccactgtgtgctcaaagagcccaacgttgccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctgacaaaataaagcagctccataacaccactgtgtgctcaaagagcccaacgttgccac 391
Query: 361 ctgaggtggaggaggaagaatagaaaccgaaacagttttggccctt 406
|||||||||||||||||||||||||||| ||||| |||| ||||||
Sbjct: 392 ctgaggtggaggaggaagaatagaaaccaaaacaatttttgccctt 437
Score = 42.1 bits (21), Expect = 0.070
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 662 ttgtacacagagtgacctatg 682
|||||||||||||||||||||
Sbjct: 721 ttgtacacagagtgacctatg 741
>gb|BE360608.1|BE360608 DG1_64_B12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 515
Score = 593 bits (299), Expect = e-168
Identities = 347/363 (95%)
Strand = Plus / Plus
Query: 44 ggaactgttgggtaacgagtacttcatgcatgcatctggttcactatatgctctttcttc 103
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 ggaacttttgggtaacgagtacttcatgcatgcttctggttcactatatgctctttcttc 60
Query: 104 tgaggtggttgaagctctagctactgcaaagagtgatagcttaaggatgtttgattatga 163
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 61 tgaggtggttgaagctctagctactacaaagagtgatagcttaaggatgtttgattacga 120
Query: 164 agatgttacaatcggcgcatggatgcttgctatgaatgtaaagcatgaagacaaccgagc 223
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 121 agatgttacagtcggcgcatggatgcttgctatgaatgtaaagcatgaagacaacagagc 180
Query: 224 aatgtgtgattcagtatgtacccctacctccatcgctgtatgggacagtaagaaatgctc 283
||||||||||||| |||| || ||||||||||| ||||||||||||||||||||||| ||
Sbjct: 181 aatgtgtgattcaatatgcactcctacctccattgctgtatgggacagtaagaaatgttc 240
Query: 284 aggtacttgtaacgtcgctgacaaaataaagcagctccataacaccactgtgtgctcaaa 343
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aggtacttgtaacatagctgacaaaataaagcagctccataacaccactgtgtgctcaaa 300
Query: 344 gagcccaacgttgccacctgaggtggaggaggaagaatagaaaccgaaacagttttggcc 403
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||
Sbjct: 301 gagcccaacgttgccacctgaggtggaggaggaagaatagaaaccaaaacaatttttgcc 360
Query: 404 ctt 406
|||
Sbjct: 361 ctt 363
>gb|CW261205.1|CW261205 104_728_11229383_116_35174_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229383, DNA
sequence
Length = 551
Score = 206 bits (104), Expect = 2e-051
Identities = 119/124 (95%)
Strand = Plus / Plus
Query: 283 caggtacttgtaacgtcgctgacaaaataaagcagctccataacaccactgtgtgctcaa 342
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 caggtacttgtaacatagctgacaaaataaagcagctccataacaccactgtgtgctcaa 77
Query: 343 agagcccaacgttgccacctgaggtggaggaggaagaatagaaaccgaaacagttttggc 402
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||
Sbjct: 78 agagcccaacgttgccacctgaggtggaggaggaagaatagaaaccaaaacaatttttgc 137
Query: 403 cctt 406
||||
Sbjct: 138 cctt 141
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 662 ttgtacacagagtgacctatgtggtttcatt 692
||||||||||||||||||||| ||| |||||
Sbjct: 425 ttgtacacagagtgacctatgcggtctcatt 455
>gb|CW261206.1|CW261206 104_728_11229383_148_35170_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229383, DNA
sequence
Length = 591
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 662 ttgtacacagagtgacctatgtggtttcatt 692
||||||||||||||||||||| ||| |||||
Sbjct: 302 ttgtacacagagtgacctatgcggtctcatt 272
>gb|CD227650.1|CD227650 CCC1_53_H12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_53_H12_A007 3', mRNA sequence
Length = 196
Score = 40.1 bits (20), Expect = 0.28
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 526 gacaccatcacattacatgt 545
||||||||||||||||||||
Sbjct: 125 gacaccatcacattacatgt 106
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 206,088
Number of Sequences: 832831
Number of extensions: 206088
Number of successful extensions: 57607
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57588
Number of HSP's gapped (non-prelim): 19
length of query: 725
length of database: 491,359,669
effective HSP length: 20
effective length of query: 705
effective length of database: 474,703,049
effective search space: 334665649545
effective search space used: 334665649545
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)