BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3042304.2.1
(805 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE358947.1|BE358947 DG1_37_C03.b1_A002 Dark Grown 1 (DG1... 755 0.0
gb|BG947739.1|BG947739 IP1_8_E06.g1_A002 Immature pannicle ... 718 0.0
gb|CX612233.1|CX612233 GABR1_1_F11.b1_A002 GA- or brassinol... 684 0.0
gb|BM326925.1|BM326925 PIC1_4_G12.g1_A002 Pathogen-infected... 666 0.0
gb|BE598394.1|BE598394 PI1_81_A12.g1_A002 Pathogen induced ... 654 0.0
gb|BM328668.1|BM328668 PIC1_25_A12.g1_A002 Pathogen-infecte... 650 0.0
gb|AW564373.1|AW564373 LG1_290_H10.b1_A002 Light Grown 1 (L... 648 0.0
gb|BG103143.1|BG103143 RHIZ2_18_F09.g1_A003 Rhizome2 (RHIZ2... 605 e-171
gb|BE358980.1|BE358980 DG1_37_C03.g1_A002 Dark Grown 1 (DG1... 589 e-166
gb|BE358837.1|BE358837 DG1_32_C04.g1_A002 Dark Grown 1 (DG1... 583 e-164
gb|BE598726.1|BE598726 PI1_81_A12.b1_A002 Pathogen induced ... 569 e-160
gb|BE356139.1|BE356139 DG1_122_E02.g1_A002 Dark Grown 1 (DG... 504 e-141
gb|BG559870.1|BG559870 RHIZ2_74_F04.g1_A003 Rhizome2 (RHIZ2... 454 e-126
gb|CB929269.1|CB929269 ABA1_41_B05.b1_A012 Abscisic acid-tr... 454 e-126
gb|AW923940.1|AW923940 WS1_31_D05.b1_A002 Water-stressed 1 ... 432 e-119
gb|BG052710.1|BG052710 RHIZ2_28_G06.g1_A003 Rhizome2 (RHIZ2... 402 e-110
gb|BM328675.1|BM328675 PIC1_25_B12.g1_A002 Pathogen-infecte... 398 e-109
gb|AW922728.1|AW922728 DG1_45_A08.g1_A002 Dark Grown 1 (DG1... 363 2e-098
gb|AW680120.1|AW680120 WS1_4_H09.g1_A002 Water-stressed 1 (... 347 1e-093
gb|BG933568.1|BG933568 WS1_4_H09.b1_A002 Water-stressed 1 (... 347 1e-093
gb|CX612323.1|CX612323 GABR1_1_F11.g1_A002 GA- or brassinol... 329 2e-088
gb|BG103104.1|BG103104 RHIZ2_18_C01.g1_A003 Rhizome2 (RHIZ2... 309 2e-082
gb|BG047632.1|BG047632 OV1_26_C08.b1_A002 Ovary 1 (OV1) Sor... 272 5e-071
gb|CN128193.1|CN128193 RHOH1_27_E03.g1_A002 Acid- and alkal... 272 5e-071
gb|CX623197.1|CX623197 GABR1_68_F11.b1_A002 GA- or brassino... 266 3e-069
gb|CN128125.1|CN128125 RHOH1_27_E03.b1_A002 Acid- and alkal... 262 4e-068
gb|CX611045.1|CX611045 ANR1_22_G07.b1_A002 Anaerobic roots ... 244 1e-062
gb|CF772893.1|CF772893 DSBF1_40_F07.g1_A010 Drought-stresse... 238 7e-061
gb|BM330970.1|BM330970 PIC1_67_H03.g1_A002 Pathogen-infecte... 230 2e-058
gb|BG047988.1|BG047988 OV1_26_C08.g1_A002 Ovary 1 (OV1) Sor... 174 8e-042
gb|CX622843.1|CX622843 GABR1_66_G03.b1_A002 GA- or brassino... 165 8e-039
gb|CW069120.1|CW069120 104_318_10525655_1_30095 Sorghum met... 157 2e-036
gb|AI724163.1|AI724163 RHIZ1_7_G05.y2_A001 Rhizome1 (RHIZ1)... 157 2e-036
gb|CN125323.1|CN125323 RHOH1_10_H10.b1_A002 Acid- and alkal... 151 1e-034
gb|CX615688.1|CX615688 GABR1_22_A05.b1_A002 GA- or brassino... 151 1e-034
gb|AW282755.1|AW282755 LG1_290_H10.g1_A002 Light Grown 1 (L... 147 2e-033
gb|CD225257.1|CD225257 CCC1_39_H04.b1_A007 Callus culture/c... 135 7e-030
gb|BZ337599.1|BZ337599 ia89f08.g1 WGS-SbicolorF (JM107 adap... 133 3e-029
gb|CW341966.1|CW341966 104_843_11486613_116_36157_085 Sorgh... 133 3e-029
gb|CW155314.1|CW155314 104_557_11146073_148_36360_067 Sorgh... 129 4e-028
gb|CW177065.1|CW177065 104_590_11158824_116_36593_092 Sorgh... 129 4e-028
gb|BG464726.1|BG464726 EM1_33_C05.g1_A002 Embryo 1 (EM1) So... 129 4e-028
gb|CW195601.1|CW195601 104_619_11180724_116_36808_044 Sorgh... 125 7e-027
gb|BG103207.1|BG103207 RHIZ2_19_E05.g1_A003 Rhizome2 (RHIZ2... 121 1e-025
gb|CD213228.1|CD213228 HS1_29_A02.b1_A012 Heat-shocked seed... 117 2e-024
gb|CF426874.1|CF426874 PH1_2_E09.b1_A002 Phosphorous-defici... 117 2e-024
gb|BE592429.1|BE592429 WS1_94_F06.g1_A002 Water-stressed 1 ... 113 3e-023
gb|CD424899.1|CD424899 SA1_9_C07.b1_A002 Salicylic acid-tre... 96 6e-018
gb|CN149962.1|CN149962 WOUND1_66_B07.b1_A002 Wounded leaves... 96 6e-018
gb|BG239908.1|BG239908 OV1_30_E11.g1_A002 Ovary 1 (OV1) Sor... 92 9e-017
gb|BI098154.1|BI098154 IP1_32_G07.g1_A002 Immature pannicle... 92 9e-017
gb|BI098163.1|BI098163 IP1_32_H07.g1_A002 Immature pannicle... 92 9e-017
gb|BM330485.1|BM330485 PIC1_52_F06.g1_A002 Pathogen-infecte... 92 9e-017
gb|CF485564.1|CF485564 POL1_32_G02.b1_A002 Pollen Sorghum b... 92 9e-017
gb|CN127153.1|CN127153 RHOH1_21_H01.b1_A002 Acid- and alkal... 92 9e-017
gb|CX607990.1|CX607990 ANR1_32_A09.b1_A002 Anaerobic roots ... 92 9e-017
gb|CX610151.1|CX610151 ANR1_17_A01.b1_A002 Anaerobic roots ... 92 9e-017
gb|CW241292.1|CW241292 104_700_11218687_116_37545_026 Sorgh... 90 4e-016
gb|CW241293.1|CW241293 104_700_11218687_148_37542_026 Sorgh... 90 4e-016
gb|CW195602.1|CW195602 104_619_11180724_148_36804_044 Sorgh... 88 1e-015
gb|BE592553.1|BE592553 WS1_94_F06.b1_A002 Water-stressed 1 ... 80 4e-013
gb|CF771082.1|CF771082 DSBF1_13_F08.g1_A010 Drought-stresse... 80 4e-013
gb|BZ332079.1|BZ332079 hx25c04.b1 WGS-SbicolorF (JM107 adap... 56 5e-006
gb|CD429345.1|CD429345 ETH1_4_B06.b1_A002 Ethylene-treated ... 46 0.005
>gb|BE358947.1|BE358947 DG1_37_C03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 587
Score = 755 bits (381), Expect = 0.0
Identities = 484/517 (93%), Gaps = 5/517 (0%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtg-tgccaaccttgag-ttangatcgcacgtatcttcaaca 69
||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct: 2 tgaccatggattaccaccgtggtgccaaccttgaggttaggatcgcacgtatcttcaaca 61
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
|||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 62 catatggccctcgcatgtgcattgacgatggccgtgttgtcagtaactttgttgctcagg 121
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
| |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ctctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccaggagtttccaat 181
Query: 190 atgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccat 249
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 182 atgtttctgatctggttgagggtctgatgaagctgatggaaggcgaccatgtaggaccat 241
Query: 250 ttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggaca 309
| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 242 tcaacctgggtaaccccggcgagttcaccatgcttgagcttgccaaggttgtccaggaca 301
Query: 310 ccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagc 369
||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 302 ccatcgaccccaatgcacagatcgagttccgtcagaacacccaggacgacccacacaagc 361
Query: 370 gcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccccctcc 429
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 362 gcaagcccgacatcagccgtgccaaggagctccttgggtgggagccgaagatccccctcc 421
Query: 430 gcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgaccaagaca 489
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 422 gcgagggccttcccctcatggtcagtgacttccgcaagcgcatctttggcgaccaaga-- 479
Query: 490 ccgcggctgccacccccggaaaccagcaaggctagga 526
||| || |||||| | |||||||||||||| |||||
Sbjct: 480 -cgccgccgccaccactggaaaccagcaaggttagga 515
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 548 ggaaatttttggtggcctgcttctag-ctgcttggtcg 584
|||| || |||||||||||||||||| |||||||||||
Sbjct: 535 ggaagttnttggtggcctgcttctagcctgcttggtcg 572
>gb|BG947739.1|BG947739 IP1_8_E06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 698
Score = 718 bits (362), Expect = 0.0
Identities = 451/482 (93%), Gaps = 3/482 (0%)
Strand = Plus / Plus
Query: 45 gttangatcgcacgtatcttcaacacatatggccctcgcatgtgcattgacgatggccgt 104
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gttaggatcgcacgtatcttcaacacatatggccctcgcatgtgcattgacgatggccgt 64
Query: 105 gttgtcagttaantcgttgctcaggcactgangaangagccattgacggtttatggtgat 164
||||||||| | | ||||||||||| |||| ||| ||||| ||||||||||||||||||
Sbjct: 65 gttgtcagtaactttgttgctcaggctctgaggaaggagcccttgacggtttatggtgat 124
Query: 165 ggaaagcaaaccaggagtttccaatatgtttctgatctggtcgagggtctgatgaagctg 224
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 125 ggaaagcaaaccaggagtttccaatatgtttctgatctggttgagggtctgatgaagctg 184
Query: 225 atggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttcaccatgctg 284
||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 185 atggaaggcgaccatgtaggaccattcaacctgggtaaccccggcgagttcaccatgctt 244
Query: 285 gagcttgccaangttgtccaggacaccatcgaccccaacgcacggatcgagttccgtcag 344
||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 245 gagcttgccaaggttgtccaggacaccatcgaccccaatgcacagatcgagttccgtcag 304
Query: 345 aacacccangacgacccacacaagcgcaagcccgacatcggccgtgccaaggagctcctt 404
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 305 aacacccaggacgacccacacaagcgcaagcccgacatcagccgtgccaaggagctcctt 364
Query: 405 gggtgggagccaaagatccccctccgcgagggccttcccctcatggtcaccgacttccgc 464
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 365 gggtgggagccgaagatccccctccgcgagggccttcccctcatggtcagtgacttccgc 424
Query: 465 aagcgcatcttcggcgaccaagacaccgcggctgccacccccggaaaccagcaaggctag 524
||||||||||| ||||||||||| ||| || |||||| | |||||||||||||| |||
Sbjct: 425 aagcgcatctttggcgaccaaga---cgccgccgccaccactggaaaccagcaaggttag 481
Query: 525 ga 526
||
Sbjct: 482 ga 483
Score = 157 bits (79), Expect = 2e-036
Identities = 130/145 (89%), Gaps = 9/145 (6%)
Strand = Plus / Plus
Query: 548 ggaaatttttggtggcctgcttctagc-tgcttggtcggccctcctctcctta--ctgac 604
|||| |||||||||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 503 ggaagtttttggtggcctgcttctagcctgcttggtcg------ctctccttatactgac 556
Query: 605 aaaagctatggccatgtagttcgtcgggaatgtgtcgctgaaataccttggttgatgctg 664
|||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 557 aaaagctatggccacgtagttcgttgggaatgtgttactgaaataccttggttgatgctg 616
Query: 665 taatgctattctttctcctgtattt 689
|||||||||||||| ||||||||||
Sbjct: 617 taatgctattctttttcctgtattt 641
>gb|CX612233.1|CX612233 GABR1_1_F11.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_1_F11_A002 3', mRNA sequence
Length = 749
Score = 684 bits (345), Expect = 0.0
Identities = 432/462 (93%), Gaps = 3/462 (0%)
Strand = Plus / Plus
Query: 65 caacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgc 124
||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct: 1 caacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagtaactttgttgc 60
Query: 125 tcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagttt 184
|||||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcaggctctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccaggagttt 120
Query: 185 ccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtagg 244
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 121 ccaatatgtttctgatctggttgagggtctgatgaagctgatggaaggcgaccatgtagg 180
Query: 245 accatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtcca 304
|||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 181 accattcaacctgggtaaccccggcgagttcaccatgcttgagcttgccaaggttgtcca 240
Query: 305 ggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccaca 364
|||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||
Sbjct: 241 ggacaccatcgaccccaatgcacagatcgagttccgtcagaacacccaggacgacccaca 300
Query: 365 caagcgcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccc 424
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 301 caagcgcaagcccgacatcagccgtgccaaggagctccttgggtgggagccgaagatccc 360
Query: 425 cctccgcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgacca 484
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 361 cctccgcgagggccttcccctcatggtcagtgacttccgcaagcgcatctttggcgacca 420
Query: 485 agacaccgcggctgccacccccggaaaccagcaaggctagga 526
||| ||| || |||||| | |||||||||||||| |||||
Sbjct: 421 aga---cgccgccgccaccactggaaaccagcaaggttagga 459
Score = 157 bits (79), Expect = 2e-036
Identities = 130/145 (89%), Gaps = 9/145 (6%)
Strand = Plus / Plus
Query: 548 ggaaatttttggtggcctgcttctagc-tgcttggtcggccctcctctcctta--ctgac 604
|||| |||||||||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 479 ggaagtttttggtggcctgcttctagcctgcttggtcg------ctctccttatactgac 532
Query: 605 aaaagctatggccatgtagttcgtcgggaatgtgtcgctgaaataccttggttgatgctg 664
|||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 533 aaaagctatggccacgtagttcgttgggaatgtgttactgaaataccttggttgatgctg 592
Query: 665 taatgctattctttctcctgtattt 689
|||||||||||||| ||||||||||
Sbjct: 593 taatgctattctttttcctgtattt 617
Score = 87.7 bits (44), Expect = 1e-015
Identities = 65/72 (90%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 738 cagttgaaccgttggggataaacctggatgatctaattctttg----ttgagagcatanc 793
||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| |
Sbjct: 660 cagttgaaccgttggagataaacccggatgatctaattctttgttgattgagagcatagc 719
Query: 794 atcatatatatg 805
||||||||||||
Sbjct: 720 atcatatatatg 731
>gb|BM326925.1|BM326925 PIC1_4_G12.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 665
Score = 666 bits (336), Expect = 0.0
Identities = 423/453 (93%), Gaps = 3/453 (0%)
Strand = Plus / Plus
Query: 74 tggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcaggcact 133
|||||||||||||||||||||||||||||||||||||||| | | ||||||||||| ||
Sbjct: 1 tggccctcgcatgtgcattgacgatggccgtgttgtcagtaactttgttgctcaggctct 60
Query: 134 gangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgt 193
|| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaggaaggagcccttgacggtttatggtgatggaaagcaaaccaggagtttccaatatgt 120
Query: 194 ttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaa 253
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 121 ttctgatctggttgagggtctgatgaagctgatggaaggcgaccatgtaggaccattcaa 180
Query: 254 cctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggacaccat 313
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 181 cctgggtaaccccggcgagttcaccatgcttgagcttgccaaggttgtccaggacaccat 240
Query: 314 cgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagcgcaa 373
||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 241 cgaccccaatgcacagatcgagttccgtcagaacacccaggacgacccacacaagcgcaa 300
Query: 374 gcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgcga 433
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 301 gcccgacatcagccgtgccaaggagctccttgggtgggagccgaagatccccctccgcga 360
Query: 434 gggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgaccaagacaccgc 493
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct: 361 gggccttcccctcatggtcagtgacttccgcaagcgcatctttggcgaccaaga---cgc 417
Query: 494 ggctgccacccccggaaaccagcaaggctagga 526
|| |||||| | |||||||||||||| |||||
Sbjct: 418 cgccgccaccactggaaaccagcaaggttagga 450
Score = 157 bits (79), Expect = 2e-036
Identities = 130/145 (89%), Gaps = 9/145 (6%)
Strand = Plus / Plus
Query: 548 ggaaatttttggtggcctgcttctagc-tgcttggtcggccctcctctcctta--ctgac 604
|||| |||||||||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 470 ggaagtttttggtggcctgcttctagcctgcttggtcg------ctctccttatactgac 523
Query: 605 aaaagctatggccatgtagttcgtcgggaatgtgtcgctgaaataccttggttgatgctg 664
|||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 524 aaaagctatggccacgtagttcgttgggaatgtgttactgaaataccttggttgatgctg 583
Query: 665 taatgctattctttctcctgtattt 689
|||||||||||||| ||||||||||
Sbjct: 584 taatgctattctttttcctgtattt 608
>gb|BE598394.1|BE598394 PI1_81_A12.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 697
Score = 654 bits (330), Expect = 0.0
Identities = 417/447 (93%), Gaps = 3/447 (0%)
Strand = Plus / Plus
Query: 80 tcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcaggcactgangaa 139
|||||||||||||||||||||||||||||||||| | | ||||||||||| |||| |||
Sbjct: 2 tcgcatgtgcattgacgatggccgtgttgtcagtaactttgttgctcaggctctgaggaa 61
Query: 140 ngagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctga 199
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ggagcccttgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctga 121
Query: 200 tctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctggg 259
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 122 tctggttgagggtctgatgaagctgatggaaggcgaccatgtaggaccattcaacctggg 181
Query: 260 caaccccggcgagttcaccatgctggagcttgccaangttgtccaggacaccatcgaccc 319
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 182 taaccccggcgagttcaccatgcttgagcttgccaaggttgtccaggacaccatcgaccc 241
Query: 320 caacgcacggatcgagttccgtcagaacacccangacgacccacacaagcgcaagcccga 379
||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 242 caatgcacagatcgagttccgtcagaacacccaggacgacccacacaagcgcaagcccga 301
Query: 380 catcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgcgagggcct 439
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 302 catcagccgtgccaaggagctccttgggtgggagccgaagatccccctccgcgagggcct 361
Query: 440 tcccctcatggtcaccgacttccgcaagcgcatcttcggcgaccaagacaccgcggctgc 499
|||||||||||||| |||||||||||||||||||| ||||||||||| ||| || ||
Sbjct: 362 tcccctcatggtcagtgacttccgcaagcgcatctttggcgaccaaga---cgccgccgc 418
Query: 500 cacccccggaaaccagcaaggctagga 526
|||| | |||||||||||||| |||||
Sbjct: 419 caccactggaaaccagcaaggttagga 445
Score = 157 bits (79), Expect = 2e-036
Identities = 130/145 (89%), Gaps = 9/145 (6%)
Strand = Plus / Plus
Query: 548 ggaaatttttggtggcctgcttctagc-tgcttggtcggccctcctctcctta--ctgac 604
|||| |||||||||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 465 ggaagtttttggtggcctgcttctagcctgcttggtcg------ctctccttatactgac 518
Query: 605 aaaagctatggccatgtagttcgtcgggaatgtgtcgctgaaataccttggttgatgctg 664
|||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 519 aaaagctatggccacgtagttcgttgggaatgtgttactgaaataccttggttgatgctg 578
Query: 665 taatgctattctttctcctgtattt 689
|||||||||||||| ||||||||||
Sbjct: 579 taatgctattctttttcctgtattt 603
Score = 69.9 bits (35), Expect = 3e-010
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 738 cagttgaaccgttggggataaacctggatgatctaattctttgttga 784
||||||||||||||| |||||||| ||||||||||||| ||||||||
Sbjct: 646 cagttgaaccgttggagataaacccggatgatctaattttttgttga 692
>gb|BM328668.1|BM328668 PIC1_25_A12.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 650
Score = 650 bits (328), Expect = 0.0
Identities = 481/528 (91%), Gaps = 16/528 (3%)
Strand = Plus / Plus
Query: 166 gaaagcaaaccaggagtttccaatatgtttctgatctggtcgagggtctgatgaagctga 225
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gaaagcaaaccaggagtttccaatatgtttctgatctggttgagggtctgatgaagctga 60
Query: 226 tggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttcaccatgctgg 285
|||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct: 61 tggaaggcgaccatgtaggaccattcaacctgggtaaccccggcgagttcaccatgcttg 120
Query: 286 agcttgccaangttgtccaggacaccatcgaccccaacgcacggatcgagttccgtcaga 345
|||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 121 agcttgccaaggttgtccaggacaccatcgaccccaatgcacagatcgagttccgtcaga 180
Query: 346 acacccangacgacccacacaagcgcaagcccgacatcggccgtgccaaggagctccttg 405
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 181 acacccaggacgacccacacaagcgcaagcccgacatcagccgtgccaaggagctccttg 240
Query: 406 ggtgggagccaaagatccccctccgcgagggccttcccctcatggtcaccgacttccgca 465
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 241 ggtgggagccgaagatccccctccgcgagggccttcccctcatggtcagtgacttccgca 300
Query: 466 agcgcatcttcggcgaccaagacaccgcggctgccacccccggaaaccagcaaggctagg 525
|||||||||| ||||||||||| ||| || |||||| | |||||||||||||| ||||
Sbjct: 301 agcgcatctttggcgaccaaga---cgccgccgccaccactggaaaccagcaaggttagg 357
Query: 526 acggaagaggagcacgggacctggaaa-tttttggtggcctgcttctag-ctgcttggtc 583
| | || ||||| || |||||| ||||||||||||||||||||| ||||||||||
Sbjct: 358 atg---aagccgcacgatacttggaaagtttttggtggcctgcttctagcctgcttggtc 414
Query: 584 ggccctcctctcct--tactgacaaaagctatggccatgtagttcgtcgggaatgtgtcg 641
| ||||||| ||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 415 g------ctctccttatactgacaaaagctatggccacgtagttcgttgggaatgtgtta 468
Query: 642 ctgaaataccttggttgatgctgtaatgctattctttctcctgtattt 689
||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 469 ctgaaataccttggttgatgctgtaatgctattctttttcctgtattt 516
Score = 87.7 bits (44), Expect = 1e-015
Identities = 65/72 (90%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 738 cagttgaaccgttggggataaacctggatgatctaattctttg----ttgagagcatanc 793
||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| |
Sbjct: 559 cagttgaaccgttggagataaacccggatgatctaattctttgttgattgagagcatagc 618
Query: 794 atcatatatatg 805
||||||||||||
Sbjct: 619 atcatatatatg 630
>gb|AW564373.1|AW564373 LG1_290_H10.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 509
Score = 648 bits (327), Expect = 0.0
Identities = 395/417 (94%), Gaps = 2/417 (0%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtg-tgccaaccttgag-ttangatcgcacgtatcttcaaca 69
||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct: 93 tgaccatggattaccaccgtggtgccaaccttgaggttaggatcgcacgtatcttcaaca 152
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
|||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 153 catatggccctcgcatgtgcattgacgatggccgtgttgtcagtaactttgttgctcagg 212
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
| |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ctctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccaggagtttccaat 272
Query: 190 atgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccat 249
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 273 atgtttctgatctggttgagggtctgatgaagctgatggaaggcgaccatgtaggaccat 332
Query: 250 ttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggaca 309
| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 333 tcaacctgggtaaccccggcgagttcaccatgcttgagcttgccaaggttgtccaggaca 392
Query: 310 ccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagc 369
||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 393 ccatcgaccccaatgcacagatcgagttccgtcagaacacccaggacgacccacacaagc 452
Query: 370 gcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccccc 426
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 453 gcaagcccgacatcagccgtgccaaggagctccttgggtgggagccgaagatccccc 509
>gb|BG103143.1|BG103143 RHIZ2_18_F09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 423
Score = 605 bits (305), Expect = e-171
Identities = 381/407 (93%), Gaps = 3/407 (0%)
Strand = Plus / Plus
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 15 gttgctcaggctctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccagg 74
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 75 agtttccaatatgtttctgatctggttgagggtctgatgaagctgatggaaggcgaccat 134
Query: 240 gtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangtt 299
||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct: 135 gtaggaccattcaacctgggtaaccccggcgagttcaccatgcttgagcttgccaaggtt 194
Query: 300 gtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgac 359
|||||||||||||| |||||||| |||| |||||||||||||||||||||||| ||||||
Sbjct: 195 gtccaggacaccattgaccccaatgcacagatcgagttccgtcagaacacccaggacgac 254
Query: 360 ccacacaagcgcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaag 419
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 255 ccacacaagcgcaagcccgacatcagccgtgccaaggagctccttgggtgggagccgaag 314
Query: 420 atccccctccgcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggc 479
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 315 atccccctccgcgagggccttcccctcatggtcagcgacttccgcaagcgcatctttggc 374
Query: 480 gaccaagacaccgcggctgccacccccggaaaccagcaaggctagga 526
|||||||| ||| || |||||| | |||||||||||||| |||||
Sbjct: 375 gaccaaga---cgccgccgccaccactggaaaccagcaaggttagga 418
>gb|BE358980.1|BE358980 DG1_37_C03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 433
Score = 589 bits (297), Expect = e-166
Identities = 370/395 (93%), Gaps = 3/395 (0%)
Strand = Plus / Plus
Query: 132 ctgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatat 191
|||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccaggagtttccaatat 62
Query: 192 gtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccattt 251
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 63 gtttctgatctggttgagggtctgatgaagctgatggaaggcgaccatgtaggaccattc 122
Query: 252 aacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggacacc 311
|||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 123 aacctgggtaaccccggcgagttcaccatgcttgagcttgccaaggttgtccaggacacc 182
Query: 312 atcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagcgc 371
||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 183 atcgaccccaatgcacagatcgagttccgtcagaacacccaggacgacccacacaagcgc 242
Query: 372 aagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgc 431
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 243 aagcccgacatcagccgtgccaaggagctccttgggtgggagccgaagatccccctccgc 302
Query: 432 gagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgaccaagacacc 491
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct: 303 gagggccttcccctcatggtcagtgacttccgcaagcgcatctttggcgaccaaga---c 359
Query: 492 gcggctgccacccccggaaaccagcaaggctagga 526
|| || |||||| | |||||||||||||| |||||
Sbjct: 360 gccgccgccaccactggaaaccagcaaggttagga 394
>gb|BE358837.1|BE358837 DG1_32_C04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 494
Score = 583 bits (294), Expect = e-164
Identities = 363/386 (94%), Gaps = 3/386 (0%)
Strand = Plus / Plus
Query: 141 gagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgat 200
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gagcccttgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgat 61
Query: 201 ctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggc 260
||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 62 ctggttgagggtctgatgaagctgatggaaggcgaccatgtaggaccattcaacctgggt 121
Query: 261 aaccccggcgagttcaccatgctggagcttgccaangttgtccaggacaccatcgacccc 320
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 122 aaccccggcgagttcaccatgcttgagcttgccaaggttgtccaggacaccatcgacccc 181
Query: 321 aacgcacggatcgagttccgtcagaacacccangacgacccacacaagcgcaagcccgac 380
|| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 182 aatgcacagatcgagttccgtcagaacacccaggacgacccacacaagcgcaagcccgac 241
Query: 381 atcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgcgagggcctt 440
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 242 atcagccgtgccaaggagctccttgggtgggagccgaagatccccctccgcgagggcctt 301
Query: 441 cccctcatggtcaccgacttccgcaagcgcatcttcggcgaccaagacaccgcggctgcc 500
||||||||||||| |||||||||||||||||||| ||||||||||| ||| || |||
Sbjct: 302 cccctcatggtcagtgacttccgcaagcgcatctttggcgaccaaga---cgccgccgcc 358
Query: 501 acccccggaaaccagcaaggctagga 526
||| | |||||||||||||| |||||
Sbjct: 359 accactggaaaccagcaaggttagga 384
Score = 81.8 bits (41), Expect = 9e-014
Identities = 83/95 (87%), Gaps = 9/95 (9%)
Strand = Plus / Plus
Query: 548 ggaaatttttggtggcctgcttctagc-tgcttggtcggccctcctctcctta--ctgac 604
|||| |||||||||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 404 ggaagtttttggtggcctgcttctagcctgcttggtcg------ctctccttatactgac 457
Query: 605 aaaagctatggccatgtagttcgtcgggaatgtgt 639
|||||||||||||| ||||||||| ||||||||||
Sbjct: 458 aaaagctatggccacgtagttcgttgggaatgtgt 492
>gb|BE598726.1|BE598726 PI1_81_A12.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 527
Score = 569 bits (287), Expect = e-160
Identities = 349/369 (94%), Gaps = 2/369 (0%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtg-tgccaaccttgag-ttangatcgcacgtatcttcaaca 69
||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct: 159 tgaccatggattaccaccgtggtgccaaccttgaggttaggatcgcacgtatcttcaaca 218
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
|||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 219 catatggccctcgcatgtgcattgacgatggccgtgttgtcagtaactttgttgctcagg 278
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
| |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ctctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccaggagtttccaat 338
Query: 190 atgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccat 249
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 339 atgtttctgatctggttgagggtctgatgaagctgatggaaggcgaccatgtaggaccat 398
Query: 250 ttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggaca 309
| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 399 tcaacctgggtaaccccggcgagttcaccatgcttgagcttgccaaggttgtccaggaca 458
Query: 310 ccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagc 369
||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 459 ccatcgaccccaatgcacagatcgagttccgtcagaacacccaggacgacccacacaagc 518
Query: 370 gcaagcccg 378
|||||||||
Sbjct: 519 gcaagcccg 527
>gb|BE356139.1|BE356139 DG1_122_E02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 575
Score = 504 bits (254), Expect = e-141
Identities = 320/342 (93%), Gaps = 3/342 (0%)
Strand = Plus / Plus
Query: 185 ccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtagg 244
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 4 ccaatatgtttctgatctggttgagggtctgatgaagctgatggaaggcgaccatgtagg 63
Query: 245 accatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtcca 304
|||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 64 accattcaacctgggtaaccccggcgagttcaccatgcttgagcttgccaaggttgtcca 123
Query: 305 ggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccaca 364
|||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||
Sbjct: 124 ggacaccatcgaccccaatgcacagatcgagttccgtcagaacacccaggacgacccaca 183
Query: 365 caagcgcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccc 424
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 184 caagcgcaagcccgacatcagccgtgccaaggagctccttgggtgggagccgaagatccc 243
Query: 425 cctccgcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgacca 484
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 244 cctccgcgagggccttcccctcatggtcagtgacttccgcaagcgcatctttggcgacca 303
Query: 485 agacaccgcggctgccacccccggaaaccagcaaggctagga 526
||| ||| || |||||| | |||||||||||||| |||||
Sbjct: 304 aga---cgccgccgccaccactggaaaccagcaaggttagga 342
Score = 143 bits (72), Expect = 3e-032
Identities = 120/134 (89%), Gaps = 9/134 (6%)
Strand = Plus / Plus
Query: 548 ggaaatttttggtggcctgcttctagc-tgcttggtcggccctcctctcctta--ctgac 604
|||| |||||||||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 362 ggaagtttttggtggcctgcttctagcctgcttggtcg------ctctccttatactgac 415
Query: 605 aaaagctatggccatgtagttcgtcgggaatgtgtcgctgaaataccttggttgatgctg 664
|||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 416 aaaagctatggccacgtagttcgttgggaatgtgttactgaaataccttggttgatgctg 475
Query: 665 taatgctattcttt 678
||||||||||||||
Sbjct: 476 taatgctattcttt 489
>gb|BG559870.1|BG559870 RHIZ2_74_F04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 468
Score = 454 bits (229), Expect = e-126
Identities = 376/421 (89%), Gaps = 16/421 (3%)
Strand = Plus / Plus
Query: 273 ttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacggatc 332
||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||| ||||
Sbjct: 1 ttcaccatgcttgagcttgccaaggttgtccaggacaccattgaccccaatgcacagatc 60
Query: 333 gagttccgtcagaacacccangacgacccacacaagcgcaagcccgacatcggccgtgcc 392
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 61 gagttccgtcagaacacccaggacgacccacacaagcgcaagcccgacatcagccgtgcc 120
Query: 393 aaggagctccttgggtgggagccaaagatccccctccgcgagggccttcccctcatggtc 452
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaggagctccttgggtgggagccgaagatccccctccgcgagggccttcccctcatggtc 180
Query: 453 accgacttccgcaagcgcatcttcggcgaccaagacaccgcggctgccacccccggaaac 512
| ||||||||||||||||||||| ||||||||||| ||| || |||||| | ||||||
Sbjct: 181 agcgacttccgcaagcgcatctttggcgaccaaga---cgccgccgccaccactggaaac 237
Query: 513 cagcaaggctaggacggaagaggagcacgggacct-ggaaatttttggtggcctgcttct 571
|||||||| ||||| | || ||||| ||| | |||||||||||||||||||||| |
Sbjct: 238 cagcaaggttaggatg---aagccgcacgagacttgggaaatttttggtggcctgctttt 294
Query: 572 ag-ctgcttggtcggccctcctctcct--tactgacaaaagctatggccatgtagttcgt 628
|| ||||||||||| ||||||| ||||||||||||||||||||| |||||| ||
Sbjct: 295 agcctgcttggtcg------ctctccttatactgacaaaagctatggccacgtagtttgt 348
Query: 629 cgggaatgtgtcgctgaaataccttggttgatgctgtaatgctattctttctcctgtatt 688
|||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 349 tgggaatgtgttactgaaatcccttggttgatgctgtaatgctattctttttcctgtatt 408
Query: 689 t 689
|
Sbjct: 409 t 409
>gb|CB929269.1|CB929269 ABA1_41_B05.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_41_B05_A012 3', mRNA sequence
Length = 508
Score = 454 bits (229), Expect = e-126
Identities = 301/325 (92%), Gaps = 3/325 (0%)
Strand = Plus / Plus
Query: 202 tggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggca 261
|||| |||||||||||||||||||||||||||| |||||||||||||| ||| |||| |
Sbjct: 1 tggttgagggtctgatgaagctgatggaaggcgcccatgtaggaccattcaacgtgggta 60
Query: 262 accccggcgagttcaccatgctggagcttgccaangttgtccaggacaccatcgacccca 321
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct: 61 accccggcgagttcaccatgcttgagcttgccaaggttgtccaggacaccattgacccca 120
Query: 322 acgcacggatcgagttccgtcagaacacccangacgacccacacaagcgcaagcccgaca 381
| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 121 atgcacagatcgagttccgtcagaacacccaggacgacccacacaagcgcaagcccgaca 180
Query: 382 tcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgcgagggccttc 441
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 181 tcagccgtgccaaggagctccttgggtgggagccgaagatccccctccgcgagggccttc 240
Query: 442 ccctcatggtcaccgacttccgcaagcgcatcttcggcgaccaagacaccgcggctgcca 501
|||||||||||| |||||||||||||||||||| ||||||||||||||| || ||||
Sbjct: 241 ccctcatggtcagtgacttccgcaagcgcatctttggcgaccaagacacc---gccgcca 297
Query: 502 cccccggaaaccagcaaggctagga 526
|| | |||||||||||||| |||||
Sbjct: 298 ccactggaaaccagcaaggttagga 322
Score = 157 bits (79), Expect = 2e-036
Identities = 130/145 (89%), Gaps = 9/145 (6%)
Strand = Plus / Plus
Query: 548 ggaaatttttggtggcctgcttctagc-tgcttggtcggccctcctctcctta--ctgac 604
||||||||||||||||||||||||||| |||||||| | ||||||||| |||||
Sbjct: 342 ggaaatttttggtggcctgcttctagcctgcttggttg------ctctccttatactgac 395
Query: 605 aaaagctatggccatgtagttcgtcgggaatgtgtcgctgaaataccttggttgatgctg 664
|||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 396 aaaagctatggccacgtagttcgttgggaatgtgttactgaaataccttggttgatgctg 455
Query: 665 taatgctattctttctcctgtattt 689
|||||||||||||| ||||||||||
Sbjct: 456 taatgctattctttttcctgtattt 480
>gb|AW923940.1|AW923940 WS1_31_D05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 408
Score = 432 bits (218), Expect = e-119
Identities = 270/286 (94%), Gaps = 2/286 (0%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtg-tgccaaccttgag-ttangatcgcacgtatcttcaaca 69
||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct: 123 tgaccatggattaccaccgtggtgccaaccttgaggttaggatcgcacgtatcttcaaca 182
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
|||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 183 catatggccctcgcatgtgcattgacgatggccgtgttgtcagtaactttgttgctcagg 242
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
| |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccaggagtttccaat 302
Query: 190 atgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccat 249
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 303 atgtttctgatctggttgagggtctgatgaagctgatggaaggcgaccatgtaggaccat 362
Query: 250 ttaacctgggcaaccccggcgagttcaccatgctggagcttgccaa 295
| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 363 tcaacctgggtaaccccggcgagttcaccatgcttgagcttgccaa 408
>gb|BG052710.1|BG052710 RHIZ2_28_G06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 500
Score = 402 bits (203), Expect = e-110
Identities = 336/376 (89%), Gaps = 16/376 (4%)
Strand = Plus / Plus
Query: 318 cccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagcgcaagccc 377
||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 cccaatgcacagatcgagttccgtcagaacacccaggacgacccacacaagcgcaagccc 60
Query: 378 gacatcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgcgagggc 437
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 61 gacatcagccgtgccaaggagctccttgggtgggagccgaagatccccctccgcgagggc 120
Query: 438 cttcccctcatggtcaccgacttccgcaagcgcatcttcggcgaccaagacaccgcggct 497
|||||||||||||||| ||||||||||||||||||||| ||||||||||| ||| ||
Sbjct: 121 cttcccctcatggtcagcgacttccgcaagcgcatctttggcgaccaaga---cgccgcc 177
Query: 498 gccacccccggaaaccagcaaggctaggacggaagaggagcacgggacct-ggaaatttt 556
|||||| | |||||||||||||| ||||| | || ||||| ||| | |||||||||
Sbjct: 178 gccaccactggaaaccagcaaggttaggatg---aagccgcacgagacttgggaaatttt 234
Query: 557 tggtggcctgcttctag-ctgcttggtcggccctcctctcct--tactgacaaaagctat 613
||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||
Sbjct: 235 tggtggcctgcttctagcctgcttggtcg------ctctccttatactgacaaaagctat 288
Query: 614 ggccatgtagttcgtcgggaatgtgtcgctgaaataccttggttgatgctgtaatgctat 673
||||| |||||| || |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 289 ggccacgtagtttgttgggaatgtgttactgaaataccttggttgatgctgtaatgctat 348
Query: 674 tctttctcctgtattt 689
||||| ||||||||||
Sbjct: 349 tctttttcctgtattt 364
Score = 79.8 bits (40), Expect = 4e-013
Identities = 64/72 (88%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 738 cagttgaaccgttggggataaacctggatgatctaattctttg----ttgagagcatanc 793
||||||||| ||||| |||||||| |||||||||||||||||| ||||||||||| |
Sbjct: 409 cagttgaacggttggagataaacccggatgatctaattctttgttgattgagagcatagc 468
Query: 794 atcatatatatg 805
||||||||||||
Sbjct: 469 atcatatatatg 480
>gb|BM328675.1|BM328675 PIC1_25_B12.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 504
Score = 398 bits (201), Expect = e-109
Identities = 340/382 (89%), Gaps = 16/382 (4%)
Strand = Plus / Plus
Query: 312 atcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagcgc 371
||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 atcgaccccaatgcacagatcgagttccgtcagaacacccaggacgacccacacaagcgc 60
Query: 372 aagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgc 431
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 61 aagcccgacatcagccgtgccaaggagctccttgggtgggagccgaagatccccctccgc 120
Query: 432 gagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgaccaagacacc 491
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct: 121 gagggccttcccctcatggtcagtgacttccgcaagcgcatctttggcgaccaaga---c 177
Query: 492 gcggctgccacccccggaaaccagcaaggctaggacggaagaggagcacgggacctggaa 551
|| || |||||| | |||||||||||||| ||||| | || ||||| || |||||
Sbjct: 178 gccgccgccaccactggaaaccagcaaggttaggatg---aagccgcacgatacttggaa 234
Query: 552 a-tttttggtggcctgcttctag-ctgcttggtcggccctcctctcct--tactgacaaa 607
| ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct: 235 agtttttggtggcctgcttctagcctgcttggtcg------ctctccttatactgacaaa 288
Query: 608 agctatggccatgtagttcgtcgggaatgtgtcgctgaaataccttggttgatgctgtaa 667
||||||||||| ||||||||| |||||||||| ||||||| ||||||||||||||||||
Sbjct: 289 agctatggccacgtagttcgttgggaatgtgttactgaaatcccttggttgatgctgtaa 348
Query: 668 tgctattctttctcctgtattt 689
||||||||||| ||||||||||
Sbjct: 349 tgctattctttttcctgtattt 370
Score = 87.7 bits (44), Expect = 1e-015
Identities = 65/72 (90%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 738 cagttgaaccgttggggataaacctggatgatctaattctttg----ttgagagcatanc 793
||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| |
Sbjct: 413 cagttgaaccgttggagataaacccggatgatctaattctttgttgattgagagcatagc 472
Query: 794 atcatatatatg 805
||||||||||||
Sbjct: 473 atcatatatatg 484
>gb|AW922728.1|AW922728 DG1_45_A08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 298
Score = 363 bits (183), Expect = 2e-098
Identities = 247/267 (92%), Gaps = 4/267 (1%)
Strand = Plus / Plus
Query: 261 aaccccggcgagttcaccatgctggagcttgccaangttgtccaggacaccatcgacccc 320
||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct: 4 aaccccggcgagttcaccatgtttgagcttgccaaggttgtccaggacaccatcgacccc 63
Query: 321 aac-gcacggatcgagttccgtcagaacacccangacgacccacacaagcgcaagcccga 379
|| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 64 aattgcacagatcgagttccgtcagaacacccaggacgacccacacaagcgcaagcccga 123
Query: 380 catcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgcgagggcct 439
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 124 catcagccgtgccaaggagctccttgggtgggagccgaagatccccctccgcgagggcct 183
Query: 440 tcccctcatggtcaccgacttccgcaagcgcatcttcggcgaccaagacaccgcggctgc 499
|||||||||||||| |||||||||||||||||||| ||||||||||| ||| || ||
Sbjct: 184 tcccctcatggtcagtgacttccgcaagcgcatctttggcgaccaaga---cgccgccgc 240
Query: 500 cacccccggaaaccagcaaggctagga 526
|||| | |||||||||||||| |||||
Sbjct: 241 caccactggaaaccagcaaggttagga 267
>gb|AW680120.1|AW680120 WS1_4_H09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 492
Score = 347 bits (175), Expect = 1e-093
Identities = 226/243 (93%), Gaps = 3/243 (1%)
Strand = Plus / Plus
Query: 284 ggagcttgccaangttgtccaggacaccatcgaccccaacgcacggatcgagttccgtca 343
|||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 7 ggagcttgccaaggttgtccaggacaccatcgaccccaatgcacagatcgagttccgtca 66
Query: 344 gaacacccangacgacccacacaagcgcaagcccgacatcggccgtgccaaggagctcct 403
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 67 gaacacccaggacgacccacacaagcgcaagcccgacatcagccgtgccaaggagctcct 126
Query: 404 tgggtgggagccaaagatccccctccgcgagggccttcccctcatggtcaccgacttccg 463
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 127 tgggtgggagccgaagatccccctccgcgagggccttcccctcatggtcagtgacttccg 186
Query: 464 caagcgcatcttcggcgaccaagacaccgcggctgccacccccggaaaccagcaaggcta 523
|||||||||||| ||||||||||| ||| || |||||| | |||||||||||||| ||
Sbjct: 187 caagcgcatctttggcgaccaaga---cgccgccgccaccactggaaaccagcaaggtta 243
Query: 524 gga 526
|||
Sbjct: 244 gga 246
Score = 157 bits (79), Expect = 2e-036
Identities = 130/145 (89%), Gaps = 9/145 (6%)
Strand = Plus / Plus
Query: 548 ggaaatttttggtggcctgcttctagc-tgcttggtcggccctcctctcctta--ctgac 604
|||| |||||||||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 266 ggaagtttttggtggcctgcttctagcctgcttggtcg------ctctccttatactgac 319
Query: 605 aaaagctatggccatgtagttcgtcgggaatgtgtcgctgaaataccttggttgatgctg 664
|||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 320 aaaagctatggccacgtagttcgttgggaatgtgttactgaaataccttggttgatgctg 379
Query: 665 taatgctattctttctcctgtattt 689
|||||||||||||| ||||||||||
Sbjct: 380 taatgctattctttttcctgtattt 404
Score = 75.8 bits (38), Expect = 6e-012
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 738 cagttgaaccgttggggataaacctggatgatctaattctttgttg 783
||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 447 cagttgaaccgttggagataaacccggatgatctaattctttgttg 492
>gb|BG933568.1|BG933568 WS1_4_H09.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 496
Score = 347 bits (175), Expect = 1e-093
Identities = 226/243 (93%), Gaps = 3/243 (1%)
Strand = Plus / Plus
Query: 284 ggagcttgccaangttgtccaggacaccatcgaccccaacgcacggatcgagttccgtca 343
|||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 7 ggagcttgccaaggttgtccaggacaccatcgaccccaatgcacagatcgagttccgtca 66
Query: 344 gaacacccangacgacccacacaagcgcaagcccgacatcggccgtgccaaggagctcct 403
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 67 gaacacccaggacgacccacacaagcgcaagcccgacatcagccgtgccaaggagctcct 126
Query: 404 tgggtgggagccaaagatccccctccgcgagggccttcccctcatggtcaccgacttccg 463
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 127 tgggtgggagccgaagatccccctccgcgagggccttcccctcatggtcagtgacttccg 186
Query: 464 caagcgcatcttcggcgaccaagacaccgcggctgccacccccggaaaccagcaaggcta 523
|||||||||||| ||||||||||| ||| || |||||| | |||||||||||||| ||
Sbjct: 187 caagcgcatctttggcgaccaaga---cgccgccgccaccactggaaaccagcaaggtta 243
Query: 524 gga 526
|||
Sbjct: 244 gga 246
Score = 157 bits (79), Expect = 2e-036
Identities = 130/145 (89%), Gaps = 9/145 (6%)
Strand = Plus / Plus
Query: 548 ggaaatttttggtggcctgcttctagc-tgcttggtcggccctcctctcctta--ctgac 604
|||| |||||||||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 266 ggaagtttttggtggcctgcttctagcctgcttggtcg------ctctccttatactgac 319
Query: 605 aaaagctatggccatgtagttcgtcgggaatgtgtcgctgaaataccttggttgatgctg 664
|||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 320 aaaagctatggccacgtagttcgttgggaatgtgttactgaaataccttggttgatgctg 379
Query: 665 taatgctattctttctcctgtattt 689
|||||||||||||| ||||||||||
Sbjct: 380 taatgctattctttttcctgtattt 404
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 738 cagttgaaccgttggggataaacctggatgatctaattctttgttga 784
||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 447 cagttgaaccgttggagataaacccggatgatctaattctttgttga 493
>gb|CX612323.1|CX612323 GABR1_1_F11.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_1_F11_A002 5', mRNA sequence
Length = 777
Score = 329 bits (166), Expect = 2e-088
Identities = 206/218 (94%), Gaps = 2/218 (0%)
Strand = Plus / Plus
Query: 12 tgaccatggattaccaccgtg-tgccaaccttgag-ttangatcgcacgtatcttcaaca 69
||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct: 560 tgaccatggattaccaccgtggtgccaaccttgaggttaggatcgcacgtatcttcaaca 619
Query: 70 catatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcagg 129
|||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 620 catatggccctcgcatgtgcattgacgatggccgtgttgtcagtaactttgttgctcagg 679
Query: 130 cactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaat 189
| |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccaggagtttccaat 739
Query: 190 atgtttctgatctggtcgagggtctgatgaagctgatg 227
|||||||||||||||| |||||||||||||||||||||
Sbjct: 740 atgtttctgatctggttgagggtctgatgaagctgatg 777
>gb|BG103104.1|BG103104 RHIZ2_18_C01.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 386
Score = 309 bits (156), Expect = 2e-082
Identities = 281/318 (88%), Gaps = 16/318 (5%)
Strand = Plus / Plus
Query: 376 ccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgcgagg 435
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ccgacatcagccgtgccaaggagctccttgggtgggagccgaagatccccctccgcgagg 60
Query: 436 gccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgaccaagacaccgcgg 495
|||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||| |
Sbjct: 61 gccttcccctcatggtcagcgacttccgcaagcgcatctttggcgaccaaga---cgccg 117
Query: 496 ctgccacccccggaaaccagcaaggctaggacggaagaggagcacgggacct-ggaaatt 554
| |||||| | |||||||||||||| ||||| | || ||||| ||| | |||||||
Sbjct: 118 ccgccaccactggaaaccagcaaggttaggatg---aagccgcacgagacttgggaaatt 174
Query: 555 tttggtggcctgcttctag-ctgcttggtcggccctcctctcct--tactgacaaaagct 611
||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||
Sbjct: 175 tttggtggcctgcttctagcctgcttggtcg------ctctccttatactgacaaaagct 228
Query: 612 atggccatgtagttcgtcgggaatgtgtcgctgaaataccttggttgatgctgtaatgct 671
||||||| |||||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 229 atggccacgtagtttgttgggaatgtgttactgaaataccttggttgatgctgtaatgct 288
Query: 672 attctttctcctgtattt 689
||||||| ||||||||||
Sbjct: 289 attctttttcctgtattt 306
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 738 cagttgaaccgttggggataaacctggatgatctaa 773
||||||||| ||||| |||||||| |||||||||||
Sbjct: 351 cagttgaacggttggagataaacccggatgatctaa 386
>gb|BG047632.1|BG047632 OV1_26_C08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 601
Score = 272 bits (137), Expect = 5e-071
Identities = 391/475 (82%), Gaps = 2/475 (0%)
Strand = Plus / Plus
Query: 14 accatggattaccaccgtg-tgccaaccttgagttang-atcgcacgtatcttcaacaca 71
|||||||| ||||| |||| ||||||||||||| || | || || || ||||||||||||
Sbjct: 12 accatggactaccatcgtggtgccaaccttgaggtaaggattgcccggatcttcaacaca 71
Query: 72 tatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcaggca 131
||||| ||||||||||||||||| || || |||||||||||| | | |||||||||||
Sbjct: 72 tatggtcctcgcatgtgcattgatgacggtcgtgttgtcagtaattttgttgctcaggcg 131
Query: 132 ctgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatat 191
|||| ||| ||||| ||||| |||||||| ||||| || || || ||||| || |||||
Sbjct: 132 ctgaggaaggagcctttgacagtttatggcgatggcaaacagactaggagctttcaatac 191
Query: 192 gtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccattt 251
|| || ||| |||| || || ||||||||||| |||||||| || || | ||||||||
Sbjct: 192 gtatcagatttggtggaagggctgatgaagctcatggaaggggatcacattggaccattc 251
Query: 252 aacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggacacc 311
||||| || || || || || ||||||||||||||||| || || || || |||||||||
Sbjct: 252 aacctcggtaatcctggagaattcaccatgctggagctggctaaggtggttcaggacacc 311
Query: 312 atcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagcgc 371
|||||||| | || || ||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 312 atcgacccagaggcgcgcatcgagttccgtccaaacactgcagacgatccacacaagcgc 371
Query: 372 aagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgc 431
||||| |||||| |||| || || ||||||||||| |||||||| ||| | ||||| ||
Sbjct: 372 aagcctgacatcagccgcgcaaaagagctccttggctgggagcccaaggttccccttcgt 431
Query: 432 gagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgaccaag 486
||||| ||||| | ||||||||| ||||||||||| || |||||||| |||||||
Sbjct: 432 gagggtcttcctcgcatggtcactgacttccgcaaacgtatcttcggggaccaag 486
>gb|CN128193.1|CN128193 RHOH1_27_E03.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_27_E03_A002 5', mRNA sequence
Length = 696
Score = 272 bits (137), Expect = 5e-071
Identities = 391/475 (82%), Gaps = 2/475 (0%)
Strand = Plus / Plus
Query: 14 accatggattaccaccgtg-tgccaaccttgagttang-atcgcacgtatcttcaacaca 71
|||||||| ||||| |||| ||||||||||||| || | || || || ||||||||||||
Sbjct: 80 accatggactaccatcgtggtgccaaccttgaggtaaggattgcccggatcttcaacaca 139
Query: 72 tatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcaggca 131
||||| ||||||||||||||||| || || |||||||||||| | | |||||||||||
Sbjct: 140 tatggtcctcgcatgtgcattgatgacggtcgtgttgtcagtaattttgttgctcaggcg 199
Query: 132 ctgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatat 191
|||| ||| ||||| ||||| |||||||| ||||| || || || ||||| || |||||
Sbjct: 200 ctgaggaaggagcctttgacagtttatggcgatggcaaacagactaggagctttcaatac 259
Query: 192 gtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccattt 251
|| || ||| |||| || || ||||||||||| |||||||| || || | ||||||||
Sbjct: 260 gtatcagatttggtggaagggctgatgaagctcatggaaggggatcacattggaccattc 319
Query: 252 aacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggacacc 311
||||| || || || || || ||||||||||||||||| || || || || |||||||||
Sbjct: 320 aacctcggtaatcctggagaattcaccatgctggagctggctaaggtggttcaggacacc 379
Query: 312 atcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagcgc 371
|||||||| | || || ||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 380 atcgacccagaggcgcgcatcgagttccgtccaaacactgcagacgatccacacaagcgc 439
Query: 372 aagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgc 431
||||| |||||| |||| || || ||||||||||| |||||||| ||| | ||||| ||
Sbjct: 440 aagcctgacatcagccgcgcaaaagagctccttggctgggagcccaaggttccccttcgt 499
Query: 432 gagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgaccaag 486
||||| ||||| | ||||||||| ||||||||||| || |||||||| |||||||
Sbjct: 500 gagggtcttcctcgcatggtcactgacttccgcaaacgtatcttcggggaccaag 554
>gb|CX623197.1|CX623197 GABR1_68_F11.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_68_F11_A002 3', mRNA sequence
Length = 752
Score = 266 bits (134), Expect = 3e-069
Identities = 375/456 (82%), Gaps = 1/456 (0%)
Strand = Plus / Plus
Query: 32 gtgccaaccttgagttang-atcgcacgtatcttcaacacatatggccctcgcatgtgca 90
|||||||||||||| || | || || || ||||||||||||||||| |||||||||||||
Sbjct: 1 gtgccaaccttgaggtaaggattgcccggatcttcaacacatatggtcctcgcatgtgca 60
Query: 91 ttgacgatggccgtgttgtcagttaantcgttgctcaggcactgangaangagccattga 150
|||| || || |||||||||||| | | ||||||||||| |||| ||| ||||| ||||
Sbjct: 61 ttgatgacggtcgtgttgtcagtaattttgttgctcaggcgctgaggaaggagcctttga 120
Query: 151 cggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgatctggtcgagg 210
| |||||||| ||||| || || || ||||| || ||||| || || ||| |||| || |
Sbjct: 121 cagtttatggcgatggcaaacagactaggagctttcaatacgtatcagatttggtggaag 180
Query: 211 gtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcg 270
| ||||||||||| |||||||| || || | |||||||| ||||| || || || || |
Sbjct: 181 ggctgatgaagctcatggaaggggatcacattggaccattcaacctcggtaatcctggag 240
Query: 271 agttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacgga 330
| ||||||||||||||||| || || || || ||||||||||||||||| | || || |
Sbjct: 241 aattcaccatgctggagctggctaaggtggttcaggacaccatcgacccagaggcgcgca 300
Query: 331 tcgagttccgtcagaacacccangacgacccacacaagcgcaagcccgacatcggccgtg 390
|||||||||||| ||||| ||||| ||||||||||||||||| |||||| |||| |
Sbjct: 301 tcgagttccgtccaaacactgcagacgatccacacaagcgcaagcctgacatcagccgcg 360
Query: 391 ccaaggagctccttgggtgggagccaaagatccccctccgcgagggccttcccctcatgg 450
| || ||||||||||| |||||||| ||| | ||||| || ||||| ||||| | |||||
Sbjct: 361 caaaagagctccttggctgggagcccaaggttccccttcgtgagggtcttcctcgcatgg 420
Query: 451 tcaccgacttccgcaagcgcatcttcggcgaccaag 486
|||| ||||||||||| || |||||||| |||||||
Sbjct: 421 tcactgacttccgcaaacgtatcttcggggaccaag 456
>gb|CN128125.1|CN128125 RHOH1_27_E03.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_27_E03_A002 3', mRNA sequence
Length = 757
Score = 262 bits (132), Expect = 4e-068
Identities = 352/427 (82%)
Strand = Plus / Plus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantc 119
||||||||||||||||| ||||||||||||||||| || || |||||||||||| | |
Sbjct: 18 atcttcaacacatatggtcctcgcatgtgcattgatgacggtcgtgttgtcagtaatttt 77
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
||||||||||| |||| ||| ||||| ||||| |||||||| ||||| || || || |||
Sbjct: 78 gttgctcaggcgctgaggaaggagcctttgacagtttatggcgatggcaaacagactagg 137
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
|| || ||||| || || ||| |||| || || ||||||||||| |||||||| || ||
Sbjct: 138 agctttcaatacgtatcagatttggtggaagggctgatgaagctcatggaaggggatcac 197
Query: 240 gtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangtt 299
| |||||||| ||||| || || || || || ||||||||||||||||| || || ||
Sbjct: 198 attggaccattcaacctcggtaatcctggagaattcaccatgctggagctggctaaggtg 257
Query: 300 gtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgac 359
|| ||||||||||||||||| | || || ||||||||||||| ||||| |||||
Sbjct: 258 gttcaggacaccatcgacccagaggcgcgcatcgagttccgtccaaacactgcagacgat 317
Query: 360 ccacacaagcgcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaag 419
||||||||||||||||| |||||| |||| || || ||||||||||| |||||||| |||
Sbjct: 318 ccacacaagcgcaagcctgacatcagccgcgcaaaagagctccttggctgggagcccaag 377
Query: 420 atccccctccgcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggc 479
| ||||| || ||||| ||||| | ||||||||| ||||||||||| || ||||||||
Sbjct: 378 gttccccttcgtgagggtcttcctcgcatggtcactgacttccgcaaacgtatcttcggg 437
Query: 480 gaccaag 486
|||||||
Sbjct: 438 gaccaag 444
>gb|CX611045.1|CX611045 ANR1_22_G07.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_22_G07_A002 3', mRNA sequence
Length = 790
Score = 244 bits (123), Expect = 1e-062
Identities = 346/422 (81%)
Strand = Plus / Plus
Query: 65 caacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgc 124
|||||||||||| ||||||||||||||||| || || |||||||||||| | | |||||
Sbjct: 1 caacacatatggtcctcgcatgtgcattgatgacggtcgtgttgtcagtaattttgttgc 60
Query: 125 tcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagttt 184
|||||| |||| ||| ||||| ||||| |||||||| ||||| || || || ||||| ||
Sbjct: 61 tcaggcgctgaggaaggagcctttgacagtttatggcgatggcaaacagactaggagctt 120
Query: 185 ccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtagg 244
||||| || || ||| |||| || || ||||||||||| |||||||| || || | ||
Sbjct: 121 tcaatacgtatcagatttggtggaagggctgatgaagctcatggaaggggatcacattgg 180
Query: 245 accatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtcca 304
|||||| ||||| || || || || || ||||||||||||||||| || || || || ||
Sbjct: 181 accattcaacctcggtaatcctggagaattcaccatgctggagctggctaaggtggttca 240
Query: 305 ggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccaca 364
||||||||||||||| | || || ||||||||||| | ||||| ||||| |||||
Sbjct: 241 ggacaccatcgacccagaggcgcgcatcgagttccgcccaaacactgcagacgatccaca 300
Query: 365 caagcgcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccc 424
|||||||||||| |||||| |||| || || ||||||||||| |||||||| ||| | ||
Sbjct: 301 caagcgcaagcctgacatcagccgcgcaaaagagctccttggctgggagcccaaggttcc 360
Query: 425 cctccgcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgacca 484
||| || ||||| ||||| | ||||||||| ||||||||||| || |||||||| |||||
Sbjct: 361 ccttcgtgagggtcttcctcgcatggtcactgacttccgcaaacgtatcttcggggacca 420
Query: 485 ag 486
||
Sbjct: 421 ag 422
>gb|CF772893.1|CF772893 DSBF1_40_F07.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_40_F07_A010 3', mRNA sequence
Length = 393
Score = 238 bits (120), Expect = 7e-061
Identities = 163/177 (92%), Gaps = 3/177 (1%)
Strand = Plus / Plus
Query: 350 ccangacgacccacacaagcgcaagcccgacatcggccgtgccaaggagctccttgggtg 409
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 ccaggacgacccacacaagcgcaagcccgacatcagccgtgccaaggagctccttgggtg 60
Query: 410 ggagccaaagatccccctccgcgagggccttcccctcatggtcaccgacttccgcaagcg 469
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 61 ggagccgaagatccccctccgcgagggccttcccctcatggtcagtgacttccgcaagcg 120
Query: 470 catcttcggcgaccaagacaccgcggctgccacccccggaaaccagcaaggctagga 526
|||||| ||||||||||| ||| || |||||| | |||||||||||||| |||||
Sbjct: 121 catctttggcgaccaaga---cgccgccgccaccactggaaaccagcaaggttagga 174
Score = 165 bits (83), Expect = 8e-039
Identities = 131/145 (90%), Gaps = 9/145 (6%)
Strand = Plus / Plus
Query: 548 ggaaatttttggtggcctgcttctagc-tgcttggtcggccctcctctcctta--ctgac 604
||||||||||||||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 194 ggaaatttttggtggcctgcttctagcctgcttggtcg------ctctccttatactgac 247
Query: 605 aaaagctatggccatgtagttcgtcgggaatgtgtcgctgaaataccttggttgatgctg 664
|||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 248 aaaagctatggccacgtagttcgttgggaatgtgttactgaaataccttggttgatgctg 307
Query: 665 taatgctattctttctcctgtattt 689
|||||||||||||| ||||||||||
Sbjct: 308 taatgctattctttttcctgtattt 332
>gb|BM330970.1|BM330970 PIC1_67_H03.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 459
Score = 230 bits (116), Expect = 2e-058
Identities = 157/170 (92%), Gaps = 3/170 (1%)
Strand = Plus / Plus
Query: 357 gacccacacaagcgcaagcccgacatcggccgtgccaaggagctccttgggtgggagcca 416
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 gacccacacaagcgcaagcccgacatcagccgtgccaaggagctccttgggtgggagccg 60
Query: 417 aagatccccctccgcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttc 476
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 aagatccccctccgcgagggccttcccctcatggtcagtgacttccgcaagcgcatcttt 120
Query: 477 ggcgaccaagacaccgcggctgccacccccggaaaccagcaaggctagga 526
||||||||||| ||| || |||||| | |||||||||||||| |||||
Sbjct: 121 ggcgaccaaga---cgccgccgccaccactggaaaccagcaaggttagga 167
Score = 157 bits (79), Expect = 2e-036
Identities = 130/145 (89%), Gaps = 9/145 (6%)
Strand = Plus / Plus
Query: 548 ggaaatttttggtggcctgcttctagc-tgcttggtcggccctcctctcctta--ctgac 604
|||| |||||||||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 187 ggaagtttttggtggcctgcttctagcctgcttggtcg------ctctccttatactgac 240
Query: 605 aaaagctatggccatgtagttcgtcgggaatgtgtcgctgaaataccttggttgatgctg 664
|||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 241 aaaagctatggccacgtagttcgttgggaatgtgttactgaaataccttggttgatgctg 300
Query: 665 taatgctattctttctcctgtattt 689
|||||||||||||| ||||||||||
Sbjct: 301 taatgctattctttttcctgtattt 325
Score = 87.7 bits (44), Expect = 1e-015
Identities = 65/72 (90%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 738 cagttgaaccgttggggataaacctggatgatctaattctttg----ttgagagcatanc 793
||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| |
Sbjct: 368 cagttgaaccgttggagataaacccggatgatctaattctttgttgattgagagcatagc 427
Query: 794 atcatatatatg 805
||||||||||||
Sbjct: 428 atcatatatatg 439
>gb|BG047988.1|BG047988 OV1_26_C08.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 635
Score = 174 bits (88), Expect = 8e-042
Identities = 272/334 (81%)
Strand = Plus / Plus
Query: 153 gtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgatctggtcgagggt 212
|||||||| ||||| || || || ||||| || ||||| || || ||| |||| || ||
Sbjct: 5 gtttatggcgatggcaaacagactaggagctttcaatacgtatcagatttggtggaaggg 64
Query: 213 ctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgag 272
||||||||||| |||||||| || || | |||||||| ||||| || || || || ||
Sbjct: 65 ctgatgaagctcatggaaggggatcacattggaccattcaacctcggtaatcctggagaa 124
Query: 273 ttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacggatc 332
||||||||||||||||| || || || || ||||||||||||||||| | || || |||
Sbjct: 125 ttcaccatgctggagctggctaaggtggttcaggacaccatcgacccagaggcgcgcatc 184
Query: 333 gagttccgtcagaacacccangacgacccacacaagcgcaagcccgacatcggccgtgcc 392
|||||||||| ||||| ||||| ||||||||||||||||| |||||| |||| ||
Sbjct: 185 gagttccgtccaaacactgcagacgatccacacaagcgcaagcctgacatcagccgcgca 244
Query: 393 aaggagctccttgggtgggagccaaagatccccctccgcgagggccttcccctcatggtc 452
|| ||||||||||| |||||||| ||| | ||||| || ||||| ||||| | |||||||
Sbjct: 245 aaagagctccttggctgggagcccaaggttccccttcgtgagggtcttcctcgcatggtc 304
Query: 453 accgacttccgcaagcgcatcttcggcgaccaag 486
|| ||||||||||| || |||||||| |||||||
Sbjct: 305 actgacttccgcaaacgtatcttcggggaccaag 338
>gb|CX622843.1|CX622843 GABR1_66_G03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_66_G03_A002 3', mRNA sequence
Length = 720
Score = 165 bits (83), Expect = 8e-039
Identities = 295/367 (80%)
Strand = Plus / Plus
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
||||||||||| |||| ||| || || ||||| |||||||| ||||| || || || |||
Sbjct: 6 gttgctcaggcgctgaggaaggaccctttgacagtttatggcgatggcaaacagactagg 65
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
|| || ||||| || || ||| |||| || || ||||||||||| |||||||| || ||
Sbjct: 66 agctttcaatacgtatcagatttggtggaagggctgatgaagctcatggaaggggatcac 125
Query: 240 gtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangtt 299
| || ||||| ||||| || || || || || ||||||||||||||||| || || ||
Sbjct: 126 attggcccattcaacctcggtaatcctggagaattcaccatgctggagctggctaaggtg 185
Query: 300 gtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgac 359
|| |||||| |||||||||| | || || ||||||||||||| ||||| |||||
Sbjct: 186 gttcaggaccccatcgacccagaggcgcgcatcgagttccgtccaaacactgcagacgat 245
Query: 360 ccacacaagcgcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaag 419
|||||||||||||| || |||||| |||| || || ||||||||||| |||||||| |||
Sbjct: 246 ccacacaagcgcaaccctgacatcagccgcgcaaaagagctccttggctgggagcccaag 305
Query: 420 atccccctccgcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggc 479
| ||||| || ||||| ||||| | ||||||||| |||||||||| || ||||||||
Sbjct: 306 gttccccttcgtgagggtcttcctcgcatggtcactgacttccgcagacgtatcttcggg 365
Query: 480 gaccaag 486
|||||||
Sbjct: 366 gaccaag 372
>gb|CW069120.1|CW069120 104_318_10525655_1_30095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10525655, DNA
sequence
Length = 538
Score = 157 bits (79), Expect = 2e-036
Identities = 130/145 (89%), Gaps = 9/145 (6%)
Strand = Plus / Plus
Query: 548 ggaaatttttggtggcctgcttctagc-tgcttggtcggccctcctctcctta--ctgac 604
|||| |||||||||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 19 ggaagtttttggtggcctgcttctagcctgcttggtcg------ctctccttatactgac 72
Query: 605 aaaagctatggccatgtagttcgtcgggaatgtgtcgctgaaataccttggttgatgctg 664
|||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 73 aaaagctatggccacgtagttcgttgggaatgtgttactgaaataccttggttgatgctg 132
Query: 665 taatgctattctttctcctgtattt 689
|||||||||||||| ||||||||||
Sbjct: 133 taatgctattctttttcctgtattt 157
Score = 87.7 bits (44), Expect = 1e-015
Identities = 65/72 (90%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 738 cagttgaaccgttggggataaacctggatgatctaattctttg----ttgagagcatanc 793
||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| |
Sbjct: 200 cagttgaaccgttggagataaacccggatgatctaattctttgttgattgagagcatagc 259
Query: 794 atcatatatatg 805
||||||||||||
Sbjct: 260 atcatatatatg 271
>gb|AI724163.1|AI724163 RHIZ1_7_G05.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 287
Score = 157 bits (79), Expect = 2e-036
Identities = 130/145 (89%), Gaps = 9/145 (6%)
Strand = Plus / Plus
Query: 548 ggaaatttttggtggcctgcttctagc-tgcttggtcggccctcctctcctta--ctgac 604
||||||||||||||||||||||||||| |||||||| | ||||||||| |||||
Sbjct: 61 ggaaatttttggtggcctgcttctagcctgcttggttg------ctctccttatactgac 114
Query: 605 aaaagctatggccatgtagttcgtcgggaatgtgtcgctgaaataccttggttgatgctg 664
|||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 115 aaaagctatggccacgtagttcgttgggaatgtgttactgaaataccttggttgatgctg 174
Query: 665 taatgctattctttctcctgtattt 689
|||||||||||||| ||||||||||
Sbjct: 175 taatgctattctttttcctgtattt 199
Score = 75.8 bits (38), Expect = 6e-012
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 738 cagttgaaccgttggggataaacctggatgatctaattctttgttg 783
||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 242 cagttgaaccgttggagataaacccggatgatctaattctttgttg 287
>gb|CN125323.1|CN125323 RHOH1_10_H10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_10_H10_A002 3', mRNA sequence
Length = 752
Score = 151 bits (76), Expect = 1e-034
Identities = 179/214 (83%)
Strand = Plus / Plus
Query: 273 ttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacggatc 332
||||||||||||||||| || || || || ||||||||||||||||| | || || |||
Sbjct: 234 ttcaccatgctggagctggctaaggtggttcaggacaccatcgacccagaggcgcgcatc 293
Query: 333 gagttccgtcagaacacccangacgacccacacaagcgcaagcccgacatcggccgtgcc 392
|||||||||| ||||| ||||| ||||||||||||||||| |||||| |||| ||
Sbjct: 294 gagttccgtccaaacactgcagacgatccacacaagcgcaagcctgacatcagccgcgca 353
Query: 393 aaggagctccttgggtgggagccaaagatccccctccgcgagggccttcccctcatggtc 452
|| ||||||||||| |||||||| ||| | ||||| || ||||| ||||| | |||||||
Sbjct: 354 aaagagctccttggctgggagcccaaggttccccttcgtgagggtcttcctcgcatggtc 413
Query: 453 accgacttccgcaagcgcatcttcggcgaccaag 486
|| ||||||||||| || |||||||| |||||||
Sbjct: 414 actgacttccgcaaacgtatcttcggggaccaag 447
>gb|CX615688.1|CX615688 GABR1_22_A05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_22_A05_A002 3', mRNA sequence
Length = 596
Score = 151 bits (76), Expect = 1e-034
Identities = 179/214 (83%)
Strand = Plus / Plus
Query: 273 ttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacggatc 332
||||||||||||||||| || || || || ||||||||||||||||| | || || |||
Sbjct: 8 ttcaccatgctggagctggctaaggtggttcaggacaccatcgacccagaggcgcgcatc 67
Query: 333 gagttccgtcagaacacccangacgacccacacaagcgcaagcccgacatcggccgtgcc 392
|||||||||| ||||| ||||| ||||||||||||||||| |||||| |||| ||
Sbjct: 68 gagttccgtccaaacactgcagacgatccacacaagcgcaagcctgacatcagccgcgca 127
Query: 393 aaggagctccttgggtgggagccaaagatccccctccgcgagggccttcccctcatggtc 452
|| ||||||||||| |||||||| ||| | ||||| || ||||| ||||| | |||||||
Sbjct: 128 aaagagctccttggctgggagcccaaggttccccttcgtgagggtcttcctcgcatggtc 187
Query: 453 accgacttccgcaagcgcatcttcggcgaccaag 486
|| ||||||||||| || |||||||| |||||||
Sbjct: 188 actgacttccgcaaacgtatcttcggggaccaag 221
>gb|AW282755.1|AW282755 LG1_290_H10.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 490
Score = 147 bits (74), Expect = 2e-033
Identities = 122/136 (89%), Gaps = 9/136 (6%)
Strand = Plus / Plus
Query: 557 tggtggcctgcttctagc-tgcttggtcggccctcctctcctta--ctgacaaaagctat 613
|||||||||||||||||| |||||||||| ||||||||| ||||||||||||||
Sbjct: 1 tggtggcctgcttctagcctgcttggtcg------ctctccttatactgacaaaagctat 54
Query: 614 ggccatgtagttcgtcgggaatgtgtcgctgaaataccttggttgatgctgtaatgctat 673
||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 55 ggccacgtagttcgttgggaatgtgttactgaaataccttggttgatgctgtaatgctat 114
Query: 674 tctttctcctgtattt 689
||||| ||||||||||
Sbjct: 115 tctttttcctgtattt 130
Score = 87.7 bits (44), Expect = 1e-015
Identities = 65/72 (90%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 738 cagttgaaccgttggggataaacctggatgatctaattctttg----ttgagagcatanc 793
||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| |
Sbjct: 173 cagttgaaccgttggagataaacccggatgatctaattctttgttgattgagagcatagc 232
Query: 794 atcatatatatg 805
||||||||||||
Sbjct: 233 atcatatatatg 244
>gb|CD225257.1|CD225257 CCC1_39_H04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_39_H04_A007 3', mRNA sequence
Length = 602
Score = 135 bits (68), Expect = 7e-030
Identities = 171/206 (83%)
Strand = Plus / Plus
Query: 273 ttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacggatc 332
||||||||||||||||| || || || || ||||||||||||||||| | || || |||
Sbjct: 25 ttcaccatgctggagctggctaaggtggttcaggacaccatcgacccagaggcgcgcatc 84
Query: 333 gagttccgtcagaacacccangacgacccacacaagcgcaagcccgacatcggccgtgcc 392
|||||||||| ||||| || || ||||||||||||||||| |||||| |||| ||
Sbjct: 85 gagttccgtccaaacactgcagatgatccacacaagcgcaagcctgacatcagccgcgca 144
Query: 393 aaggagctccttgggtgggagccaaagatccccctccgcgagggccttcccctcatggtc 452
|| ||||||||||| |||||||| ||| | ||||| || ||||| ||||| | |||||||
Sbjct: 145 aaagagctccttggctgggagcccaaggttccccttcgggagggtcttcctcgcatggtc 204
Query: 453 accgacttccgcaagcgcatcttcgg 478
|| ||||||||||| || ||||||||
Sbjct: 205 actgacttccgcaaacgtatcttcgg 230
>gb|BZ337599.1|BZ337599 ia89f08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia89f08 5', DNA sequence
Length = 717
Score = 133 bits (67), Expect = 3e-029
Identities = 80/85 (94%)
Strand = Plus / Minus
Query: 45 gttangatcgcacgtatcttcaacacatatggccctcgcatgtgcattgacgatggccgt 104
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gttaggatcgcacgtatcttcaacacatatggccctcgcatgtgcattgacgatggccgt 352
Query: 105 gttgtcagttaantcgttgctcagg 129
||||||||| | | ||||||||||
Sbjct: 351 gttgtcagtaactttgttgctcagg 327
Score = 131 bits (66), Expect = 1e-028
Identities = 76/80 (95%)
Strand = Plus / Minus
Query: 126 caggcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttc 185
||||| |||| ||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 165 caggctctgaggaaggagcccttgacggtttatggtgatggaaagcaaaccaggagtttc 106
Query: 186 caatatgtttctgatctggt 205
||||||||||||||||||||
Sbjct: 105 caatatgtttctgatctggt 86
Score = 54.0 bits (27), Expect = 2e-005
Identities = 34/35 (97%), Gaps = 1/35 (2%)
Strand = Plus / Minus
Query: 12 tgaccatggattaccaccgt-gtgccaaccttgag 45
|||||||||||||||||||| ||||||||||||||
Sbjct: 541 tgaccatggattaccaccgtggtgccaaccttgag 507
>gb|CW341966.1|CW341966 104_843_11486613_116_36157_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11486613, DNA
sequence
Length = 758
Score = 133 bits (67), Expect = 3e-029
Identities = 80/85 (94%)
Strand = Plus / Minus
Query: 45 gttangatcgcacgtatcttcaacacatatggccctcgcatgtgcattgacgatggccgt 104
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gttaggatcgcacgtatcttcaacacatatggccctcgcatgtgcattgacgatggccgt 82
Query: 105 gttgtcagttaantcgttgctcagg 129
||||||||| | | ||||||||||
Sbjct: 81 gttgtcagtaactttgttgctcagg 57
Score = 54.0 bits (27), Expect = 2e-005
Identities = 34/35 (97%), Gaps = 1/35 (2%)
Strand = Plus / Minus
Query: 12 tgaccatggattaccaccgt-gtgccaaccttgag 45
|||||||||||||||||||| ||||||||||||||
Sbjct: 271 tgaccatggattaccaccgtggtgccaaccttgag 237
>gb|CW155314.1|CW155314 104_557_11146073_148_36360_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146073, DNA
sequence
Length = 683
Score = 129 bits (65), Expect = 4e-028
Identities = 186/227 (81%)
Strand = Plus / Plus
Query: 252 aacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggacacc 311
|||||||| ||||| ||||||||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 30 aacctggggaacccgggcgagttcacgatgctggagctggccaaggtggtgcaggagacc 89
Query: 312 atcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagcgc 371
||||||| ||| || |||| |||||| | |||||| |||||||| |||||||||
Sbjct: 90 atcgaccggggcgcgcgcatcgtgttccgccccaacaccgccgacgacccgcacaagcgc 149
Query: 372 aagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgc 431
||||| |||||| ||| |||||| |||| || ||||||||||| ||| | || ||||||
Sbjct: 150 aagccggacatcacccgcgccaagcagctgctggggtgggagcccaaggtgccgctccgc 209
Query: 432 gagggccttcccctcatggtcaccgacttccgcaagcgcatcttcgg 478
||||| || || ||||||||| |||||||||| |||||||||||
Sbjct: 210 gagggactcccgctcatggtccacgacttccgcgcccgcatcttcgg 256
>gb|CW177065.1|CW177065 104_590_11158824_116_36593_092 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158824, DNA
sequence
Length = 640
Score = 129 bits (65), Expect = 4e-028
Identities = 186/227 (81%)
Strand = Plus / Minus
Query: 252 aacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccaggacacc 311
|||||||| ||||| ||||||||||| ||||||||||| ||||| || || ||||| |||
Sbjct: 555 aacctggggaacccgggcgagttcacgatgctggagctggccaaggtggtgcaggagacc 496
Query: 312 atcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacacaagcgc 371
||||||| ||| || |||| |||||| | |||||| |||||||| |||||||||
Sbjct: 495 atcgaccggggcgcgcgcatcgtgttccgccccaacaccgccgacgacccgcacaagcgc 436
Query: 372 aagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatccccctccgc 431
||||| |||||| ||| |||||| |||| || ||||||||||| ||| | || ||||||
Sbjct: 435 aagccggacatcacccgcgccaagcagctgctggggtgggagcccaaggtgccgctccgc 376
Query: 432 gagggccttcccctcatggtcaccgacttccgcaagcgcatcttcgg 478
||||| || || ||||||||| |||||||||| |||||||||||
Sbjct: 375 gagggactcccgctcatggtccacgacttccgcgcccgcatcttcgg 329
>gb|BG464726.1|BG464726 EM1_33_C05.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 299
Score = 129 bits (65), Expect = 4e-028
Identities = 154/184 (83%)
Strand = Plus / Plus
Query: 303 caggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgaccca 362
||||||||||||||||| | || || ||||||||||||| ||||| ||||| |||
Sbjct: 2 caggacaccatcgacccagaggcgcgcatcgagttccgtccaaacactgcagacgatcca 61
Query: 363 cacaagcgcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatc 422
|||||||||||||| |||||| |||| || || ||||||||||| |||||||| ||| |
Sbjct: 62 cacaagcgcaagcctgacatcagccgcgcaaaagagctccttggctgggagcccaaggtt 121
Query: 423 cccctccgcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgac 482
||||| || ||||| ||||| | ||||||||| ||||||||||| || |||||||| |||
Sbjct: 122 ccccttcgtgagggtcttcctcgcatggtcactgacttccgcaaacgtatcttcggggac 181
Query: 483 caag 486
||||
Sbjct: 182 caag 185
>gb|CW195601.1|CW195601 104_619_11180724_116_36808_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11180724, DNA
sequence
Length = 596
Score = 125 bits (63), Expect = 7e-027
Identities = 78/83 (93%)
Strand = Plus / Plus
Query: 607 aagctatggccatgtagttcgtcgggaatgtgtcgctgaaataccttggttgatgctgta 666
|||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 1 aagctatggccacgtagttcgttgggaatgtgttactgaaataccttggttgatgctgta 60
Query: 667 atgctattctttctcctgtattt 689
|||||||||||| ||||||||||
Sbjct: 61 atgctattctttttcctgtattt 83
Score = 87.7 bits (44), Expect = 1e-015
Identities = 65/72 (90%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 738 cagttgaaccgttggggataaacctggatgatctaattctttg----ttgagagcatanc 793
||||||||||||||| |||||||| |||||||||||||||||| ||||||||||| |
Sbjct: 126 cagttgaaccgttggagataaacccggatgatctaattctttgttgattgagagcatagc 185
Query: 794 atcatatatatg 805
||||||||||||
Sbjct: 186 atcatatatatg 197
>gb|BG103207.1|BG103207 RHIZ2_19_E05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 561
Score = 121 bits (61), Expect = 1e-025
Identities = 153/184 (83%)
Strand = Plus / Plus
Query: 303 caggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgaccca 362
||||||||||||||||| | || || ||||||||||||| ||||| || || |||
Sbjct: 15 caggacaccatcgacccagaggcgcgcatcgagttccgtccaaacactgcagatgatcca 74
Query: 363 cacaagcgcaagcccgacatcggccgtgccaaggagctccttgggtgggagccaaagatc 422
|||||||||||||| |||||| |||| || || ||||||||||| |||||||| ||| |
Sbjct: 75 cacaagcgcaagcctgacatcagccgcgcaaaagagctccttggctgggagcccaaggtt 134
Query: 423 cccctccgcgagggccttcccctcatggtcaccgacttccgcaagcgcatcttcggcgac 482
||||| || ||||| ||||| | ||||||||| ||||||||||| || |||||||| |||
Sbjct: 135 ccccttcgtgagggtcttcctcgcatggtcactgacttccgcaaacgtatcttcggggac 194
Query: 483 caag 486
||||
Sbjct: 195 caag 198
>gb|CD213228.1|CD213228 HS1_29_A02.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_29_A02_A012 3', mRNA sequence
Length = 570
Score = 117 bits (59), Expect = 2e-024
Identities = 165/201 (82%)
Strand = Plus / Plus
Query: 278 catgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacggatcgagtt 337
|||||||||||| || || || || ||||||||||||||||| | || || || |||||
Sbjct: 1 catgctggagctggctaaggtggttcaggacaccatcgacccagaggcgcgcattgagtt 60
Query: 338 ccgtcagaacacccangacgacccacacaagcgcaagcccgacatcggccgtgccaagga 397
||||| ||||| || || ||||||||||||||||| |||||| |||| || || ||
Sbjct: 61 ccgtccaaacactgcagatgatccacacaagcgcaagcctgacatcagccgcgcaaaaga 120
Query: 398 gctccttgggtgggagccaaagatccccctccgcgagggccttcccctcatggtcaccga 457
||||||||| |||||||| ||| | ||||| || ||||| ||||| | ||||||||| ||
Sbjct: 121 gctccttggctgggagcccaaggttccccttcgggagggtcttcctcgcatggtcactga 180
Query: 458 cttccgcaagcgcatcttcgg 478
||||||||| || ||||||||
Sbjct: 181 cttccgcaaacgtatcttcgg 201
>gb|CF426874.1|CF426874 PH1_2_E09.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_2_E09_A002 3', mRNA sequence
Length = 598
Score = 117 bits (59), Expect = 2e-024
Identities = 132/155 (85%), Gaps = 2/155 (1%)
Strand = Plus / Plus
Query: 14 accatggattaccaccgtg-tgccaaccttgagttang-atcgcacgtatcttcaacaca 71
|||||||| ||||| |||| ||||||||||||| || | || || || ||||||||||||
Sbjct: 236 accatggactaccatcgtggtgccaaccttgaggtaaggattgcccggatcttcaacaca 295
Query: 72 tatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantcgttgctcaggca 131
||||| ||||||||||||||||| || || |||||||||||| | | |||||||||||
Sbjct: 296 tatggtcctcgcatgtgcattgatgacggtcgtgttgtcagtaattttgttgctcaggcg 355
Query: 132 ctgangaangagccattgacggtttatggtgatgg 166
|||| ||| ||||| ||||| |||||||| |||||
Sbjct: 356 ctgaggaaggagcctttgacagtttatggcgatgg 390
>gb|BE592429.1|BE592429 WS1_94_F06.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 477
Score = 113 bits (57), Expect = 3e-023
Identities = 114/133 (85%)
Strand = Plus / Plus
Query: 354 gacgacccacacaagcgcaagcccgacatcggccgtgccaaggagctccttgggtgggag 413
||||| ||||||||||||||||| |||||| |||| || || ||||||||||| ||||||
Sbjct: 31 gacgatccacacaagcgcaagcctgacatcagccgcgcaaaagagctccttggctgggag 90
Query: 414 ccaaagatccccctccgcgagggccttcccctcatggtcaccgacttccgcaagcgcatc 473
|| ||| | ||||| || ||||| ||||| | ||||||||| ||||||||||| || |||
Sbjct: 91 cccaaggttccccttcgtgagggtcttcctcgcatggtcactgacttccgcaaacgtatc 150
Query: 474 ttcggcgaccaag 486
||||| |||||||
Sbjct: 151 ttcggggaccaag 163
>gb|CD424899.1|CD424899 SA1_9_C07.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_9_C07_A002 3', mRNA sequence
Length = 677
Score = 95.6 bits (48), Expect = 6e-018
Identities = 103/122 (84%), Gaps = 4/122 (3%)
Strand = Plus / Plus
Query: 73 atggccctcgcatgtgcattgacgatggccgtgttgtcagtta----antcgttgctcag 128
|||||||||||||||||||||| |||||| ||||||||||| | | | |||||||||
Sbjct: 295 atggccctcgcatgtgcattgatgatggctgtgttgtcagtaactttaattgttgctcag 354
Query: 129 gcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaa 188
| | ||| ||| ||||| ||||||||||||||||||| ||| |||| || ||||||| ||
Sbjct: 355 gaattgaggaaggagccgttgacggtttatggtgatgcaaatcaaaacatgagtttctaa 414
Query: 189 ta 190
||
Sbjct: 415 ta 416
Score = 83.8 bits (42), Expect = 2e-014
Identities = 122/146 (83%), Gaps = 12/146 (8%)
Strand = Plus / Plus
Query: 548 ggaaatttttggtggcctgcttctagctgcttggtcggccctcctctccttactgacaaa 607
|||||||||||||||||| |||||||||||||||| | ||| |||||| ||||||
Sbjct: 529 ggaaatttttggtggcctacttctagctgcttggttg------ctccccttacagacaaa 582
Query: 608 a--gctatg--gccatgtagttcgtcgggaatgtgtcgctgaaataccttggttgatgct 663
| |||||| ||| |||||||| | || |||||||| ||||||||||| |||| ||||
Sbjct: 583 aaagctatgcggccttgtagttctttggaaatgtgtcactgaaatacct--gttggtgct 640
Query: 664 gtaatgctattctttctcctgtattt 689
||||||||||||||| ||| ||||||
Sbjct: 641 gtaatgctattctttttccggtattt 666
>gb|CN149962.1|CN149962 WOUND1_66_B07.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_66_B07_A002 3', mRNA sequence
Length = 836
Score = 95.6 bits (48), Expect = 6e-018
Identities = 103/122 (84%), Gaps = 4/122 (3%)
Strand = Plus / Plus
Query: 73 atggccctcgcatgtgcattgacgatggccgtgttgtcagtta----antcgttgctcag 128
|||||| ||||||||||||||| |||||| ||||||||||| | | | |||||||||
Sbjct: 579 atggccttcgcatgtgcattgatgatggctgtgttgtcagtaactttaattgttgctcag 638
Query: 129 gcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttccaa 188
||| ||| ||| ||||| ||||||||||||||||||| ||| |||| || ||||||| ||
Sbjct: 639 gcattgaggaaggagccgttgacggtttatggtgatgcaaatcaaaacatgagtttctaa 698
Query: 189 ta 190
||
Sbjct: 699 ta 700
>gb|BG239908.1|BG239908 OV1_30_E11.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 627
Score = 91.7 bits (46), Expect = 9e-017
Identities = 123/146 (84%), Gaps = 12/146 (8%)
Strand = Plus / Plus
Query: 548 ggaaatttttggtggcctgcttctagctgcttggtcggccctcctctccttactgacaaa 607
|||||||||||||||||| |||||||||||||||| | ||| |||||| ||||||
Sbjct: 374 ggaaatttttggtggcctacttctagctgcttggttg------ctccccttacagacaaa 427
Query: 608 a--gctatg--gccatgtagttcgtcgggaatgtgtcgctgaaataccttggttgatgct 663
| |||||| ||| |||||||| | || |||||||| ||||||||||| |||| ||||
Sbjct: 428 aaagctatgcggccttgtagttctttggaaatgtgtcactgaaatacct--gttggtgct 485
Query: 664 gtaatgctattctttctcctgtattt 689
||||||||||||||| ||||||||||
Sbjct: 486 gtaatgctattctttttcctgtattt 511
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 166,907
Number of Sequences: 832831
Number of extensions: 166907
Number of successful extensions: 46741
Number of sequences better than 0.5: 64
Number of HSP's better than 0.5 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46457
Number of HSP's gapped (non-prelim): 214
length of query: 805
length of database: 491,359,669
effective HSP length: 20
effective length of query: 785
effective length of database: 474,703,049
effective search space: 372641893465
effective search space used: 372641893465
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)