BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023825.2.1
(1094 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD223826.1|CD223826 CCC1_30_C12.b1_A007 Callus culture/c... 466 e-129
gb|BE598668.1|BE598668 PI1_81_G10.b1_A002 Pathogen induced ... 345 5e-093
gb|CD210978.1|CD210978 HS1_58_H07.b1_A012 Heat-shocked seed... 285 4e-075
gb|BM324798.1|BM324798 PIC1_35_G09.b1_A002 Pathogen-infecte... 242 6e-062
gb|CB924981.1|CB924981 ABA1_29_B09.b1_A012 Abscisic acid-tr... 186 3e-045
gb|BE598560.1|BE598560 PI1_83_A08.g1_A002 Pathogen induced ... 184 1e-044
gb|BZ412929.1|BZ412929 232a8_13 Subclones from BAC clones m... 161 2e-037
gb|BM324718.1|BM324718 PIC1_34_G04.b1_A002 Pathogen-infecte... 153 4e-035
gb|BZ412841.1|BZ412841 111e10_12 Subclones from BAC clones ... 141 2e-031
gb|BM331709.1|BM331709 PIC1_59_F10.g1_A002 Pathogen-infecte... 139 6e-031
gb|BE598327.1|BE598327 PI1_81_G10.g1_A002 Pathogen induced ... 137 2e-030
gb|BZ412928.1|BZ412928 232a8_08 Subclones from BAC clones m... 129 6e-028
gb|BM328210.1|BM328210 PIC1_22_D06.g1_A002 Pathogen-infecte... 123 4e-026
gb|CW178061.1|CW178061 104_591_11159361_148_36612_037 Sorgh... 82 1e-013
gb|CW178060.1|CW178060 104_591_11159361_116_36611_037 Sorgh... 72 1e-010
gb|CF428452.1|CF428452 PH1_15_C10.b1_A002 Phosphorous-defic... 64 3e-008
gb|BM329289.1|BM329289 PIC1_35_G09.g1_A002 Pathogen-infecte... 56 7e-006
gb|BE918124.1|BE918124 OV1_2_C03.b1_A002 Ovary 1 (OV1) Sorg... 50 4e-004
gb|BE918628.1|BE918628 OV1_4_C03.b1_A002 Ovary 1 (OV1) Sorg... 46 0.007
gb|CD210040.1|CD210040 HS1_56_F11.g1_A012 Heat-shocked seed... 46 0.007
gb|CD210818.1|CD210818 HS1_66_C12.b1_A012 Heat-shocked seed... 46 0.007
gb|CD231560.1|CD231560 SS1_22_F12.b1_A012 Salt-stressed see... 46 0.007
gb|CD231796.1|CD231796 SS1_23_D05.g1_A012 Salt-stressed see... 46 0.007
gb|CF488175.1|CF488175 POL1_48_F01.b1_A002 Pollen Sorghum b... 46 0.007
gb|CN127327.1|CN127327 RHOH1_22_H01.b1_A002 Acid- and alkal... 46 0.007
gb|CN127412.1|CN127412 RHOH1_22_H01.g3_A002 Acid- and alkal... 46 0.007
gb|CN139301.1|CN139301 OX1_21_F05.b1_A002 Oxidatively-stres... 46 0.007
gb|CN145882.1|CN145882 WOUND1_36_A05.b1_A002 Wounded leaves... 46 0.007
gb|CN151877.1|CN151877 WOUND1_78_G01.b1_A002 Wounded leaves... 46 0.007
gb|CF485067.1|CF485067 POL1_29_F04.b1_A002 Pollen Sorghum b... 44 0.027
gb|CF488612.1|CF488612 POL1_51_C07.b1_A002 Pollen Sorghum b... 44 0.027
gb|CN126958.1|CN126958 RHOH1_20_D08.b1_A002 Acid- and alkal... 44 0.027
gb|CF488370.1|CF488370 POL1_49_B07.g1_A002 Pollen Sorghum b... 42 0.11
gb|CF483082.1|CF483082 POL1_11_D12.b1_A002 Pollen Sorghum b... 40 0.42
>gb|CD223826.1|CD223826 CCC1_30_C12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_30_C12_A007 3', mRNA sequence
Length = 680
Score = 466 bits (235), Expect = e-129
Identities = 253/259 (97%)
Strand = Plus / Plus
Query: 298 ataatccagagtttgaggatgatccagatctttatgtgctgaagcctttgaagtatattg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataatccagagtttgaggatgatccagatctttatgtgctgaagcctttgaagtatattg 60
Query: 358 gaattgaagtttggcaggtaaaagctggttcagttttcgacaacattctgatttgtgatg 417
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 61 ggattgaagtttggcaggtaaaagctggttcagttttcgacaacattttgatttgtgatg 120
Query: 418 accctgagtatgcaagaaaggttgttgaggaaacttggggtgcaaatagggaggctgaaa 477
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 121 accctgagtatgcaagaaatgttgttgaggaaacttggggtgctaatagggaggctgaaa 180
Query: 478 aggaagcttttgaagaagctgaaaaggagaggaaagctagggaggatagggaaggtcaaa 537
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aggaggcttttgaagaagctgaaaaggagaggaaagctagggaggatagggaaggtcaaa 240
Query: 538 aggcaaaggacgatggtgg 556
|||||||||| ||||||||
Sbjct: 241 aggcaaaggatgatggtgg 259
Score = 214 bits (108), Expect = 1e-053
Identities = 195/218 (89%), Gaps = 7/218 (3%)
Strand = Plus / Plus
Query: 581 taaaaaacactacagagatcactgggacgactaccatgatgagctataaaagtccccaaa 640
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 275 taaaaaacactacagagatcactgggatgactaccatgatgagctat-gaagtccccaaa 333
Query: 641 -tattgcattcctcaaaagcataagctggaagttgcttcggacattgtgggtgcttttca 699
||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 334 gtattgcattcctc-aaagcataagctggaagttgctttggacattgtggatacttttc- 391
Query: 700 ataataataattgattcgcctggtcagaacaacctgaagtgtttcttgctatgtgccgac 759
||||||||||||||||| || | ||||||||||||||||||||||||||||||| |
Sbjct: 392 --aataataattgattcgcgaggcccgaacaacctgaagtgtttcttgctatgtgccaaa 449
Query: 760 aaattattgaactacaggatttgatatgtaatggacaa 797
||| || | |||||||||| |||| |||||| ||||||
Sbjct: 450 aaaataatcaactacagga-ttgagatgtaacggacaa 486
Score = 137 bits (69), Expect = 2e-030
Identities = 117/133 (87%)
Strand = Plus / Plus
Query: 815 attccagcgaaaacttggctctggtactgaaatagaggggacgagagactgtagtttgtg 874
|||||||||||||||||||||||| |||||||||| | ||||||| |||| || ||
Sbjct: 533 attccagcgaaaacttggctctggcactgaaatagggtggacgaggttctgttcgttatg 592
Query: 875 tctgtacaacggtgccggccatgtgctagctttgtaatctcaaaacattgactttgcatg 934
|||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 593 tctgtaacacggtgctggccatgtgctagctttgtaatctcaaaacattgtctttgcctc 652
Query: 935 aataatgtaagtt 947
|||||||||||||
Sbjct: 653 aataatgtaagtt 665
>gb|BE598668.1|BE598668 PI1_81_G10.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 411
Score = 345 bits (174), Expect = 5e-093
Identities = 211/222 (95%), Gaps = 1/222 (0%)
Strand = Plus / Plus
Query: 10 gggatattctccctcctcgtaaaattaaggatgttcacgccaaaaggcctaaggattggg 69
||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 190 gggatatcctccctcctcgtaaaattaaggatcttcacgccaaaaggcctaaggactggg 249
Query: 70 atgacagagaatatattgaagatcctgatgaagttaagccagagggctatgattctatcc 129
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 250 atgacagagaatatattgaagatcctgatgaagtaaagccagagggctatgattctatcc 309
Query: 130 caaaacagattcctgatccgaaggacaaaaagcctgacacatgggatgaagatgaggatg 189
|||||||||||||||||||||||| ||||||||||||||| |||||||| || |||||||
Sbjct: 310 caaaacagattcctgatccgaaggccaaaaagcctgacacgtgggatgaggacgaggatg 369
Query: 190 gaatatggaagcccagaat-ggtatcaaatccagcatacaag 230
|||||||||||||||| || |||||| |||||||||||||||
Sbjct: 370 gaatatggaagcccaggatgggtatcgaatccagcatacaag 411
>gb|CD210978.1|CD210978 HS1_58_H07.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_58_H07_A012 3', mRNA sequence
Length = 737
Score = 285 bits (144), Expect = 4e-075
Identities = 312/368 (84%)
Strand = Plus / Plus
Query: 150 aaggacaaaaagcctgacacatgggatgaagatgaggatggaatatggaagcccagaatg 209
||||||||||||||||| |||||||||| || || || || | ||||||||||||||||
Sbjct: 5 aaggacaaaaagcctgagtcatgggatgatgacgaagacggtacatggaagcccagaatg 64
Query: 210 gtatcaaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactac 269
|| | ||||||| |||||||||||| ||||| || |||| |||||| ||||||||||||
Sbjct: 65 atacctaatccagaatacaagggaccatggaagcggaagaaaattaagaatcctaactac 124
Query: 270 aagggtaaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctt 329
|| || |||||||||||||| ||||| || |||||||||||||||||||| ||||| ||
Sbjct: 125 aaaggaaaatggaagaccccgtggattgacaatccagagtttgaggatgacccagaccta 184
Query: 330 tatgtgctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttca 389
||||| |||| |||||| ||||| | || |||||||| |||||||| |||||||||||
Sbjct: 185 tatgttttgaaacctttgcagtatgtggggattgaagtctggcaggtcaaagctggttcg 244
Query: 390 gttttcgacaacattctgatttgtgatgaccctgagtatgcaagaaaggttgttgaggaa 449
||||| ||||||||| ||||||| ||||| || || ||||||||| | ||||| || |||
Sbjct: 245 gtttttgacaacattttgatttgcgatgatccagactatgcaagacatgttgtagatgaa 304
Query: 450 acttggggtgcaaatagggaggctgaaaaggaagcttttgaagaagctgaaaaggagagg 509
|||| | |||||||| |||||||||||| || || ||||||| |||||||| | |||||
Sbjct: 305 acttttgctgcaaataaggaggctgaaaaagaggcctttgaaggagctgaaaggaagagg 364
Query: 510 aaagctag 517
|| |||||
Sbjct: 365 aaggctag 372
>gb|BM324798.1|BM324798 PIC1_35_G09.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 571
Score = 242 bits (122), Expect = 6e-062
Identities = 245/286 (85%)
Strand = Plus / Plus
Query: 10 gggatattctccctcctcgtaaaattaaggatgttcacgccaaaaggcctaaggattggg 69
||||||| || ||||||||||| || || |||||| | || |||| ||| || || ||||
Sbjct: 285 gggatatccttcctcctcgtaagatcaaagatgttaatgcgaaaaagccaaaagactggg 344
Query: 70 atgacagagaatatattgaagatcctgatgaagttaagccagagggctatgattctatcc 129
||||||| ||||||||||||||||||||| |||||||||||||||| |||||||| || |
Sbjct: 345 atgacagggaatatattgaagatcctgatcaagttaagccagagggatatgattcaattc 404
Query: 130 caaaacagattcctgatccgaaggacaaaaagcctgacacatgggatgaagatgaggatg 189
| |||||||| ||| |||| ||||||||||||||||| |||||||||| || || || |
Sbjct: 405 ctaaacagatacctaatccaaaggacaaaaagcctgagtcatgggatgatgacgaagacg 464
Query: 190 gaatatggaagcccagaatggtatcaaatccagcatacaagggaccttggaaacgcaaga 249
| | |||||||||||||||| || | ||||||| |||||||||||| ||||| || ||||
Sbjct: 465 gtacatggaagcccagaatgatacctaatccagaatacaagggaccatggaagcggaaga 524
Query: 250 gaattaaaaatcctaactacaagggtaaatggaagaccccatggat 295
||||||| |||||||||||| | || |||||||||||||| |||||
Sbjct: 525 gaattaagaatcctaactactaaggaaaatggaagaccccgtggat 570
>gb|CB924981.1|CB924981 ABA1_29_B09.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_29_B09_A012 3', mRNA sequence
Length = 663
Score = 186 bits (94), Expect = 3e-045
Identities = 205/242 (84%)
Strand = Plus / Plus
Query: 276 aaatggaagaccccatggatcgataatccagagtttgaggatgatccagatctttatgtg 335
|||||||||||||| ||||| || |||||||||||||||||||| ||||| || |||||
Sbjct: 7 aaatggaagaccccgtggattgacaatccagagtttgaggatgacccagacctatatgtt 66
Query: 336 ctgaagcctttgaagtatattggaattgaagtttggcaggtaaaagctggttcagttttc 395
|||| |||||| ||||| | || |||||||| |||||||| ||||||||||| |||||
Sbjct: 67 ttgaaacctttgcagtatgtggggattgaagtctggcaggtcaaagctggttcggttttt 126
Query: 396 gacaacattctgatttgtgatgaccctgagtatgcaagaaaggttgttgaggaaacttgg 455
||||||||| ||||||| ||||| || || ||||||||| | ||||| || |||||||
Sbjct: 127 gacaacattttgatttgcgatgatccagactatgcaagacatgttgtagatgaaactttt 186
Query: 456 ggtgcaaatagggaggctgaaaaggaagcttttgaagaagctgaaaaggagaggaaagct 515
| |||||||| |||||||||||| || || ||||||| |||||||| | ||||||| |||
Sbjct: 187 gctgcaaataaggaggctgaaaaagaggcctttgaaggagctgaaaggaagaggaaggct 246
Query: 516 ag 517
||
Sbjct: 247 ag 248
>gb|BE598560.1|BE598560 PI1_83_A08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 411
Score = 184 bits (93), Expect = 1e-044
Identities = 167/187 (89%), Gaps = 6/187 (3%)
Strand = Plus / Plus
Query: 595 gagatcactgggacgactaccatgatgagctataaaagtccccaaa-tattgcattcctc 653
||||||||||||| ||||||||||||||||||| || ||||||||| |||||||||||||
Sbjct: 1 gagatcactgggatgactaccatgatgagctatgaa-gtccccaaagtattgcattcctc 59
Query: 654 aaaagcataagctggaagttgcttcggacattgtgggtgcttttcaataataataattga 713
||| |||||||||||||||||||| ||||||||||| | ||||||||||| |||||||
Sbjct: 60 aaa-gcataagctggaagttgctttggacattgtggatccttttcaataa---taattga 115
Query: 714 ttcgcctggtcagaacaacctgaagtgtttcttgctatgtgccgacaaattattgaacta 773
||||| || | ||||||||||||||||||||||||||||||| | ||| || | |||||
Sbjct: 116 ttcgcgaggcccgaacaacctgaagtgtttcttgctatgtgccaaaaaaataatcaacta 175
Query: 774 caggatt 780
|||||||
Sbjct: 176 caggatt 182
Score = 121 bits (61), Expect = 1e-025
Identities = 116/133 (87%), Gaps = 1/133 (0%)
Strand = Plus / Plus
Query: 815 attccagcgaaaacttggctctggtactgaaatagaggggacgagagactgtagtttgtg 874
|||||||||||||||||||||||| |||||||||| | ||||||| |||| || ||
Sbjct: 246 attccagcgaaaacttggctctggcactgaaatagggtggacgaggttctgttcgttatg 305
Query: 875 tctgtacaacggtgccggccatgtgctagctttgtaatctcaaaacattgactttgcatg 934
|||||| ||||||| ||||||||||||||||||||||||||||||| || |||||| |
Sbjct: 306 tctgtaacacggtgctggccatgtgctagctttgtaatctcaaaaca-tgtctttgcctc 364
Query: 935 aataatgtaagtt 947
|||||||||||||
Sbjct: 365 aataatgtaagtt 377
>gb|BZ412929.1|BZ412929 232a8_13 Subclones from BAC clones mapped to Sorghum bicolor
chromosome 3 Sorghum bicolor genomic clone 232a8, DNA
sequence
Length = 682
Score = 161 bits (81), Expect = 2e-037
Identities = 96/101 (95%)
Strand = Plus / Plus
Query: 371 gcaggtaaaagctggttcagttttcgacaacattctgatttgtgatgaccctgagtatgc 430
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 480 gcaggtaaaagctggttcagttttcgacaaccatttgatttgtgatgaccctgagtatgc 539
Query: 431 aagaaaggttgttgaggaaacttggggtgcaaatagggagg 471
|||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 540 aagaaatgttgttgaggaaacttggggtgctaatagggagg 580
Score = 147 bits (74), Expect = 3e-033
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 304 cagagtttgaggatgatccagatctttatgtgctgaagcctttgaagtatattggaattg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cagagtttgaggatgatccagatctttatgtgctgaagcctttgaagtatattggaattg 352
Query: 364 aagtttggcaggta 377
||||||||||||||
Sbjct: 353 aagtttggcaggta 366
Score = 119 bits (60), Expect = 6e-025
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 247 agagaattaaaaatcctaactacaagggtaaatggaagaccccatggatcgataatccag 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 agagaattaaaaatcctaactacaagggtaaatggaagaccccatggatcgataatccag 130
>gb|BM324718.1|BM324718 PIC1_34_G04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 466
Score = 153 bits (77), Expect = 4e-035
Identities = 146/169 (86%)
Strand = Plus / Plus
Query: 10 gggatattctccctcctcgtaaaattaaggatgttcacgccaaaaggcctaaggattggg 69
||||||| || ||||||||||| || || |||||| | || |||| ||| || || ||||
Sbjct: 285 gggatatccttcctcctcgtaagatcaaagatgttaatgcgaaaaagccaaaagactggg 344
Query: 70 atgacagagaatatattgaagatcctgatgaagttaagccagagggctatgattctatcc 129
||||||| ||||||||||||||||||||| |||||||||||||||| |||||||| || |
Sbjct: 345 atgacagggaatatattgaagatcctgatcaagttaagccagagggatatgattcaattc 404
Query: 130 caaaacagattcctgatccgaaggacaaaaagcctgacacatgggatga 178
| |||||||| ||| |||| ||||||||||||||||| ||||||||||
Sbjct: 405 ctaaacagatacctaatccaaaggacaaaaagcctgagtcatgggatga 453
>gb|BZ412841.1|BZ412841 111e10_12 Subclones from BAC clones mapped to Sorghum bicolor
chromosome 3 Sorghum bicolor genomic clone 111e10, DNA
sequence
Length = 715
Score = 141 bits (71), Expect = 2e-031
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 304 cagagtttgaggatgatccagatctttatgtgctgaagcctttgaagtatattggaattg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cagagtttgaggatgatccagatctttatgtgctgaagcctttgaagtatattggaattg 352
Query: 364 aagtttggcag 374
|||||||||||
Sbjct: 353 aagtttggcag 363
Score = 117 bits (59), Expect = 2e-024
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 247 agagaattaaaaatcctaactacaagggtaaatggaagaccccatggatcgataatcca 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 agagaattaaaaatcctaactacaagggtaaatggaagaccccatggatcgataatcca 129
>gb|BM331709.1|BM331709 PIC1_59_F10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 622
Score = 139 bits (70), Expect = 6e-031
Identities = 172/206 (83%)
Strand = Plus / Plus
Query: 312 gaggatgatccagatctttatgtgctgaagcctttgaagtatattggaattgaagtttgg 371
|||||||| ||||| || ||||| |||| |||||| ||||| | || |||||||| |||
Sbjct: 1 gaggatgacccagacctatatgttttgaaacctttgcagtatgtggggattgaagtctgg 60
Query: 372 caggtaaaagctggttcagttttcgacaacattctgatttgtgatgaccctgagtatgca 431
||||| ||||||||||| ||||| ||||||||| ||||||| ||||| || || ||||||
Sbjct: 61 caggtcaaagctggttcggtttttgacaacattttgatttgcgatgatccagactatgca 120
Query: 432 agaaaggttgttgaggaaacttggggtgcaaatagggaggctgaaaaggaagcttttgaa 491
||| | ||||| || ||||||| | |||||||| |||||||||||| || || ||||||
Sbjct: 121 agacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaaagaggcctttgaa 180
Query: 492 gaagctgaaaaggagaggaaagctag 517
| |||||||| | ||||||| |||||
Sbjct: 181 ggagctgaaaggaagaggaaggctag 206
>gb|BE598327.1|BE598327 PI1_81_G10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 123
Score = 137 bits (69), Expect = 2e-030
Identities = 105/113 (92%), Gaps = 3/113 (2%)
Strand = Plus / Plus
Query: 596 agatcactgggacgactaccatgatgagctataaaagtccccaaa-tattgcattcctca 654
|||||||||||| ||||||||||||||||||| || ||||||||| ||||||||||||||
Sbjct: 1 agatcactgggatgactaccatgatgagctatgaa-gtccccaaagtattgcattcctca 59
Query: 655 aaagcataagctggaagttgcttcggacattgtgggtgcttttcaataataat 707
|| |||||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct: 60 aa-gcataagctggaagttgctttggacattgtggatacttttcaataataat 111
>gb|BZ412928.1|BZ412928 232a8_08 Subclones from BAC clones mapped to Sorghum bicolor
chromosome 3 Sorghum bicolor genomic clone 232a8, DNA
sequence
Length = 690
Score = 129 bits (65), Expect = 6e-028
Identities = 83/89 (93%)
Strand = Plus / Minus
Query: 160 agcctgacacatgggatgaagatgaggatggaatatggaagcccagaatggtatcaaatc 219
|||||||||| |||||||| || ||||||||||||||||||||||| |||||||| ||||
Sbjct: 93 agcctgacacgtgggatgaggacgaggatggaatatggaagcccaggatggtatcgaatc 34
Query: 220 cagcatacaagggaccttggaaacgcaag 248
|||||||||||||||| ||||||||||||
Sbjct: 33 cagcatacaagggaccatggaaacgcaag 5
Score = 101 bits (51), Expect = 1e-019
Identities = 57/59 (96%)
Strand = Plus / Minus
Query: 56 gcctaaggattgggatgacagagaatatattgaagatcctgatgaagttaagccagagg 114
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 417 gcctaaggactgggatgacagagaatatattgaagatcctgatgaagtaaagccagagg 359
Score = 91.7 bits (46), Expect = 1e-016
Identities = 49/50 (98%)
Strand = Plus / Minus
Query: 112 agggctatgattctatcccaaaacagattcctgatccgaaggacaaaaag 161
|||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 278 agggctatgattctatcccaaaacagattcctgatccgaaggccaaaaag 229
Score = 77.8 bits (39), Expect = 2e-012
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 10 gggatattctccctcctcgtaaaattaaggatgttcacgccaaaagg 56
||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 553 gggatatcctccctcctcgtaaaattaaggatcttcacgccaaaagg 507
>gb|BM328210.1|BM328210 PIC1_22_D06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 629
Score = 123 bits (62), Expect = 4e-026
Identities = 134/158 (84%)
Strand = Plus / Plus
Query: 360 attgaagtttggcaggtaaaagctggttcagttttcgacaacattctgatttgtgatgac 419
|||||||| |||||||| ||||||||||| ||||| ||||||||| ||||||| |||||
Sbjct: 15 attgaagtctggcaggtcaaagctggttcggtttttgacaacattttgatttgcgatgat 74
Query: 420 cctgagtatgcaagaaaggttgttgaggaaacttggggtgcaaatagggaggctgaaaag 479
|| || ||||||||| | ||||| || ||||||| | |||||||| ||||||||||||
Sbjct: 75 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaaa 134
Query: 480 gaagcttttgaagaagctgaaaaggagaggaaagctag 517
|| || ||||||| |||||||| | ||||||| |||||
Sbjct: 135 gaggcctttgaaggagctgaaaggaagaggaaggctag 172
>gb|CW178061.1|CW178061 104_591_11159361_148_36612_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159361, DNA
sequence
Length = 648
Score = 81.8 bits (41), Expect = 1e-013
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 66 tgggatgacagagaatatattgaagatcctgatgaagttaagccagagg 114
||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 360 tgggatgacagggaatatattgaagatcctgatcaagttaagccagagg 408
Score = 44.1 bits (22), Expect = 0.027
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 112 agggctatgattctatcccaaaacagattcctgatccgaaggacaaaaag 161
|||| |||||||| || || |||||||| ||| |||| ||||||||||||
Sbjct: 482 agggatatgattcaattcctaaacagatacctaatccaaaggacaaaaag 531
>gb|CW178060.1|CW178060 104_591_11159361_116_36611_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159361, DNA
sequence
Length = 666
Score = 71.9 bits (36), Expect = 1e-010
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 372 caggtaaaagctggttcagttttcgacaacattctgatttgtgatgaccctgagtatgca 431
||||| ||||||||||| ||||| ||||||||| ||||||| ||||| || || ||||||
Sbjct: 337 caggtcaaagctggttcggtttttgacaacattttgatttgcgatgatccagactatgca 278
Query: 432 agaaaggttgttgaggaaacttggggtgcaaatagggagg 471
||| | ||||| || ||||||| | |||||||| |||||
Sbjct: 277 agacatgttgtagatgaaacttttgctgcaaataaggagg 238
Score = 60.0 bits (30), Expect = 5e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 304 cagagtttgaggatgatccagatctttatgtgctgaagcctttgaagtatattggaattg 363
|||||||||||||||| ||||| || ||||| |||| |||||| ||||| | || ||||
Sbjct: 509 cagagtttgaggatgacccagacctatatgttttgaaacctttgcagtatgtggggattg 450
Query: 364 aagtttggcaggta 377
|||| |||||||||
Sbjct: 449 aagtctggcaggta 436
>gb|CF428452.1|CF428452 PH1_15_C10.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_15_C10_A002 3', mRNA sequence
Length = 551
Score = 63.9 bits (32), Expect = 3e-008
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 426 tatgcaagaaaggttgttgaggaaacttggggtgcaaatagggaggctgaaaaggaagct 485
||||||||| | ||||| || ||||||| | |||||||| |||||||||||| || ||
Sbjct: 12 tatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaaagaggcc 71
Query: 486 tttgaagaagctgaaaaggagaggaaagctag 517
||||||| |||||||| | ||||||| |||||
Sbjct: 72 tttgaaggagctgaaaggaagaggaaggctag 103
>gb|BM329289.1|BM329289 PIC1_35_G09.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 654
Score = 56.0 bits (28), Expect = 7e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 458 tgcaaatagggaggctgaaaaggaagcttttgaagaagctgaaaaggagaggaaagctag 517
|||||||| |||||||||||| || || ||||||| |||||||| | ||||||| |||||
Sbjct: 24 tgcaaataaggaggctgaaaaagaggcctttgaaggagctgaaaggaagaggaaggctag 83
>gb|BE918124.1|BE918124 OV1_2_C03.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 169
Score = 50.1 bits (25), Expect = 4e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 224 atacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaa 283
|||||||||||| ||||| | ||||| ||| || || || |||||| |||||||||||||
Sbjct: 81 atacaagggaccatggaagcacaagaaaatcaagaacccgaactaccagggtaaatggaa 140
Query: 284 g 284
|
Sbjct: 141 g 141
>gb|BE918628.1|BE918628 OV1_4_C03.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 495
Score = 46.1 bits (23), Expect = 0.007
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
|||| |||| |||||||||||| ||||| | |||| ||| || || || |||||| |||
Sbjct: 150 caaacccagaatacaagggaccatggaagcaaaagaaaatcaagaacccgaactaccagg 209
Query: 274 gtaaatggaag 284
|||||||||||
Sbjct: 210 gtaaatggaag 220
>gb|CD210040.1|CD210040 HS1_56_F11.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_56_F11_A012 5', mRNA sequence
Length = 783
Score = 46.1 bits (23), Expect = 0.007
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
|||| |||| |||||||||||| ||||| | |||| ||| || || || |||||| |||
Sbjct: 740 caaacccagaatacaagggaccatggaagcaaaagaaaatcaagaacccgaactaccagg 681
Query: 274 gtaaatggaag 284
|||||||||||
Sbjct: 680 gtaaatggaag 670
>gb|CD210818.1|CD210818 HS1_66_C12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_66_C12_A012 3', mRNA sequence
Length = 716
Score = 46.1 bits (23), Expect = 0.007
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
|||| |||| |||||||||||| ||||| | |||| ||| || || || |||||| |||
Sbjct: 52 caaacccagaatacaagggaccatggaagcaaaagaaaatcaagaacccgaactaccagg 111
Query: 274 gtaaatggaag 284
|||||||||||
Sbjct: 112 gtaaatggaag 122
>gb|CD231560.1|CD231560 SS1_22_F12.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_22_F12_A012 3', mRNA sequence
Length = 664
Score = 46.1 bits (23), Expect = 0.007
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
|||| |||| |||||||||||| ||||| | |||| ||| || || || |||||| |||
Sbjct: 3 caaacccagaatacaagggaccatggaagcaaaagaaaatcaagaacccgaactaccagg 62
Query: 274 gtaaatggaag 284
|||||||||||
Sbjct: 63 gtaaatggaag 73
>gb|CD231796.1|CD231796 SS1_23_D05.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_23_D05_A012 5', mRNA sequence
Length = 655
Score = 46.1 bits (23), Expect = 0.007
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
|||| |||| |||||||||||| ||||| | |||| ||| || || || |||||| |||
Sbjct: 439 caaacccagaatacaagggaccatggaagcaaaagaaaatcaagaacccgaactaccagg 498
Query: 274 gtaaatggaag 284
|||||||||||
Sbjct: 499 gtaaatggaag 509
>gb|CF488175.1|CF488175 POL1_48_F01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_48_F01_A002 3', mRNA sequence
Length = 664
Score = 46.1 bits (23), Expect = 0.007
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
|||| |||| |||||||||||| ||||| | |||| ||| || || || |||||| |||
Sbjct: 3 caaacccagaatacaagggaccatggaagcaaaagaaaatcaagaacccgaactaccagg 62
Query: 274 gtaaatggaag 284
|||||||||||
Sbjct: 63 gtaaatggaag 73
>gb|CN127327.1|CN127327 RHOH1_22_H01.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_H01_A002 3', mRNA sequence
Length = 832
Score = 46.1 bits (23), Expect = 0.007
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
|||| |||| |||||||||||| ||||| | |||| ||| || || || |||||| |||
Sbjct: 116 caaacccagaatacaagggaccatggaagcaaaagaaaatcaagaacccgaactaccagg 175
Query: 274 gtaaatggaag 284
|||||||||||
Sbjct: 176 gtaaatggaag 186
>gb|CN127412.1|CN127412 RHOH1_22_H01.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_H01_A002 5', mRNA sequence
Length = 756
Score = 46.1 bits (23), Expect = 0.007
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
|||| |||| |||||||||||| ||||| | |||| ||| || || || |||||| |||
Sbjct: 472 caaacccagaatacaagggaccatggaagcaaaagaaaatcaagaacccgaactaccagg 531
Query: 274 gtaaatggaag 284
|||||||||||
Sbjct: 532 gtaaatggaag 542
>gb|CN139301.1|CN139301 OX1_21_F05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_21_F05_A002 3', mRNA sequence
Length = 813
Score = 46.1 bits (23), Expect = 0.007
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
|||| |||| |||||||||||| ||||| | |||| ||| || || || |||||| |||
Sbjct: 97 caaacccagaatacaagggaccatggaagcaaaagaaaatcaagaacccgaactaccagg 156
Query: 274 gtaaatggaag 284
|||||||||||
Sbjct: 157 gtaaatggaag 167
>gb|CN145882.1|CN145882 WOUND1_36_A05.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_36_A05_A002 3', mRNA sequence
Length = 801
Score = 46.1 bits (23), Expect = 0.007
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
|||| |||| |||||||||||| ||||| | |||| ||| || || || |||||| |||
Sbjct: 148 caaacccagaatacaagggaccatggaagcaaaagaaaatcaagaacccgaactaccagg 207
Query: 274 gtaaatggaag 284
|||||||||||
Sbjct: 208 gtaaatggaag 218
>gb|CN151877.1|CN151877 WOUND1_78_G01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_78_G01_A002 3', mRNA sequence
Length = 766
Score = 46.1 bits (23), Expect = 0.007
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
|||| |||| |||||||||||| ||||| | |||| ||| || || || |||||| |||
Sbjct: 49 caaacccagaatacaagggaccatggaagcaaaagaaaatcaagaacccgaactaccagg 108
Query: 274 gtaaatggaag 284
|||||||||||
Sbjct: 109 gtaaatggaag 119
>gb|CF485067.1|CF485067 POL1_29_F04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_29_F04_A002 3', mRNA sequence
Length = 654
Score = 44.1 bits (22), Expect = 0.027
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 219 ccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaa 278
|||| |||||||||||| ||||| | |||| ||| || || || |||||| ||||||||
Sbjct: 1 ccagaatacaagggaccatggaagcaaaagaaaatcaagaacccgaactaccagggtaaa 60
Query: 279 tggaag 284
||||||
Sbjct: 61 tggaag 66
>gb|CF488612.1|CF488612 POL1_51_C07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_51_C07_A002 3', mRNA sequence
Length = 684
Score = 44.1 bits (22), Expect = 0.027
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 219 ccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaa 278
|||| |||||||||||| ||||| | |||| ||| || || || |||||| ||||||||
Sbjct: 5 ccagaatacaagggaccatggaagcaaaagaaaatcaagaacccgaactaccagggtaaa 64
Query: 279 tggaag 284
||||||
Sbjct: 65 tggaag 70
>gb|CN126958.1|CN126958 RHOH1_20_D08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_20_D08_A002 3', mRNA sequence
Length = 760
Score = 44.1 bits (22), Expect = 0.027
Identities = 88/110 (80%)
Strand = Plus / Plus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
|||| |||| |||||||||||| ||||| | |||| ||| || || || |||| | |||
Sbjct: 43 caaacccagaatacaagggaccatggaagcaaaagaaaatcaagaacccgaacttccagg 102
Query: 274 gtaaatggaagaccccatggatcgataatccagagtttgaggatgatcca 323
||||||||||| | || | ||| || |||||||| || |||||||||||
Sbjct: 103 gtaaatggaaggcacctttgattgacaatccagatttcaaggatgatcca 152
>gb|CF488370.1|CF488370 POL1_49_B07.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_49_B07_A002 5', mRNA sequence
Length = 556
Score = 42.1 bits (21), Expect = 0.11
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 224 atacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagggtaaatggaa 283
|||||||||||| ||||| | |||| ||| || || || |||||| |||||||||||||
Sbjct: 239 atacaagggaccatggaagcaaaagaaaatcaagaacccgaactaccagggtaaatggaa 180
Query: 284 g 284
|
Sbjct: 179 g 179
>gb|CF483082.1|CF483082 POL1_11_D12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_11_D12_A002 3', mRNA sequence
Length = 620
Score = 40.1 bits (20), Expect = 0.42
Identities = 58/71 (81%)
Strand = Plus / Minus
Query: 214 caaatccagcatacaagggaccttggaaacgcaagagaattaaaaatcctaactacaagg 273
|||| |||| |||| ||||||| ||||| | |||| ||| || || || |||||| |||
Sbjct: 154 caaacccagaatacnagggaccatggaagcaaaagaaaatcaagaacccgaactaccagg 95
Query: 274 gtaaatggaag 284
|||||||||||
Sbjct: 94 gtaaatggaag 84
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 307,534
Number of Sequences: 832831
Number of extensions: 307534
Number of successful extensions: 96013
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95926
Number of HSP's gapped (non-prelim): 77
length of query: 1094
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1074
effective length of database: 474,703,049
effective search space: 509831074626
effective search space used: 509831074626
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)