BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023309.2.1
(1096 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF071514.1|CF071514 FE1_17_F09.b1_A002 Iron-deficient se... 896 0.0
gb|BM323763.1|BM323763 PIC1_23_B05.b1_A002 Pathogen-infecte... 702 0.0
gb|CF757391.1|CF757391 DSAF1_17_D01.g1_A011 Drought-stresse... 620 e-176
gb|CF758465.1|CF758465 DSAF1_32_C02.g1_A011 Drought-stresse... 571 e-161
gb|BM328273.1|BM328273 PIC1_23_B05.g1_A002 Pathogen-infecte... 553 e-155
gb|AW746901.1|AW746901 WS1_56_G10.b1_A002 Water-stressed 1 ... 511 e-143
gb|CW191867.1|CW191867 104_614_11178724_148_36945_014 Sorgh... 468 e-130
gb|CW433316.1|CW433316 fsbb001f148h19f0 Sorghum methylation... 291 7e-077
gb|CW172533.1|CW172533 104_583_11156341_148_36538_051 Sorgh... 167 3e-039
gb|BI245583.1|BI245583 IP1_67_D10.g1_A002 Immature pannicle... 125 9e-027
gb|CW433317.1|CW433317 fsbb001f148h19k0 Sorghum methylation... 117 2e-024
gb|CW212338.1|CW212338 104_643_11190971_116_37018_040 Sorgh... 115 9e-024
gb|CW297055.1|CW297055 104_779_11461840_116_35637_062 Sorgh... 115 9e-024
gb|CW297056.1|CW297056 104_779_11461840_148_35641_062 Sorgh... 115 9e-024
gb|CW405270.1|CW405270 fsbb001f097m04f0 Sorghum methylation... 115 9e-024
gb|CW447185.1|CW447185 fsbb001f180d05k0 Sorghum methylation... 115 9e-024
gb|CW459222.1|CW459222 fsbb001f205n19f0 Sorghum methylation... 115 9e-024
gb|CW247030.1|CW247030 104_707_11221579_148_35088_066 Sorgh... 74 3e-011
gb|CW247031.1|CW247031 104_707_11221579_148_37606_066 Sorgh... 74 3e-011
gb|AW924477.1|AW924477 WS1_69_H03.g1_A002 Water-stressed 1 ... 74 3e-011
gb|BE363755.1|BE363755 WS1_69_G03.g2_A002 Water-stressed 1 ... 74 3e-011
gb|BE363765.1|BE363765 WS1_69_H03.g2_A002 Water-stressed 1 ... 74 3e-011
gb|BM327391.1|BM327391 PIC1_14_B09.g1_A002 Pathogen-infecte... 74 3e-011
gb|BM327400.1|BM327400 PIC1_14_C09.g1_A002 Pathogen-infecte... 74 3e-011
gb|CF770501.1|CF770501 DSBF1_8_D05.b1_A010 Drought-stressed... 74 3e-011
gb|CF770591.1|CF770591 DSBF1_8_D05.g1_A010 Drought-stressed... 74 3e-011
gb|CF756334.1|CF756334 DSAF1_5_A09.b1_A011 Drought-stressed... 72 1e-010
gb|CF756424.1|CF756424 DSAF1_5_A09.g1_A011 Drought-stressed... 72 1e-010
gb|CW188215.1|CW188215 104_607_11172910_116_36728_081 Sorgh... 64 3e-008
gb|CW172532.1|CW172532 104_583_11156341_116_36537_051 Sorgh... 58 2e-006
gb|CW212339.1|CW212339 104_643_11190971_148_37019_040 Sorgh... 58 2e-006
gb|AW680592.1|AW680592 WS1_6_B01.b1_A002 Water-stressed 1 (... 48 0.002
gb|AW924371.1|AW924371 WS1_69_G03.b1_A002 Water-stressed 1 ... 48 0.002
gb|AW924382.1|AW924382 WS1_69_H03.b1_A002 Water-stressed 1 ... 48 0.002
gb|BE366961.1|BE366961 PI1_42_D11.b1_A002 Pathogen induced ... 48 0.002
gb|BM322857.1|BM322857 PIC1_14_B09.b1_A002 Pathogen-infecte... 48 0.002
gb|BM322868.1|BM322868 PIC1_14_C09.b1_A002 Pathogen-infecte... 48 0.002
gb|BZ331087.1|BZ331087 hw06b08.g1 WGS-SbicolorF (JM107 adap... 40 0.42
gb|CL188041.1|CL188041 104_404_10901310_114_32445_029 Sorgh... 40 0.42
gb|CW098318.1|CW098318 104_464_11002942_116_34363_083 Sorgh... 40 0.42
gb|CW300570.1|CW300570 104_784_11463737_116_36257_079 Sorgh... 40 0.42
gb|CW300571.1|CW300571 104_784_11463737_148_36258_079 Sorgh... 40 0.42
gb|CW303584.1|CW303584 104_788_11465317_148_35697_061 Sorgh... 40 0.42
gb|CW334303.1|CW334303 104_832_11482427_148_36053_036 Sorgh... 40 0.42
>gb|CF071514.1|CF071514 FE1_17_F09.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_17_F09_A002 3', mRNA sequence
Length = 671
Score = 896 bits (452), Expect = 0.0
Identities = 622/675 (92%), Gaps = 9/675 (1%)
Strand = Plus / Plus
Query: 308 aagaggatgcagggctttcccttctatgacaaaactatgagaattcaatatgccaagacc 367
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 aagaggatgcagggatttcccttctatgacaaaactatgagaattcaatatgccaagacc 61
Query: 368 aaatcagatattatagcaaaggctgatggcacctttgtacctcgagaaagaagaaagagg 427
|| || |||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 62 aagtcggatattgtagcaaaggccgatggcacctttgtacctcgagaaagaagaaagagg 121
Query: 428 actgatgaaaaatctgaaaagaagcagaagcgcgagcatcaccatgatgctggtgctagt 487
||||||||| ||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 122 gtcgatgaaaaacctgaaaagaagcagaagcgcgagcaccaccatgatgct------agt 175
Query: 488 caaattggcatgggtgtaactgcttaccctggtgtttatggggctccacagctcacccag 547
|||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 176 caaattgggatgggtgtaaatgcttaccctggtgtatatggggctccacagctcacccag 235
Query: 548 atacctatagcaggaggacaaagggtcatgatgccagagattatcgtaccaaacaacatc 607
||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 236 atacctatagctggaggacagagggtcattatgccagagattatcgtaccaaacaacatc 295
Query: 608 ttgtttgtccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgc 667
|||| ||||||||| ||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 296 ctgttcgtccaaaacctgccacacgagacaacacccatgatgctccagatgctcttctgc 355
Query: 668 cagtaccctggcttcaaggaggttcggatgatcgaggcgaagcctgggattgctttcgtg 727
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 356 cagtaccctggcttcaaggaggttcggatggtcgaggcgaagcctgggattgctttcgtg 415
Query: 728 gagtatggagacgagacccaggccactgctgccatgaacaaccttcaaagcttcaaaatt 787
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 416 gagtatggagacgaggggcaggccactgctgccatgaacaaccttcaaagcttcaagatt 475
Query: 788 acaaaagaaaaccagatggtcatcacatatgcgaagaagtaatgagctcccgagcaatgt 847
||||||||||||||||||||||||||||| |||||||||||| | ||||||||| |||
Sbjct: 476 acaaaagaaaaccagatggtcatcacatacgcgaagaagtaacaacctcccgagctgtgt 535
Query: 848 tta-cctgatgtgtgagatgttgtattccgag-ttttacacaactggtaaatttccttca 905
| | |||||| ||| | ||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct: 536 tgaccctgatctgttaaatgttgtattccgagtttttgcacaactggtagatttccttca 595
Query: 906 tgtgttaggtagacagcatcctgaacaacctgttaattgtacccactgggctgcagctat 965
| |||||||||||||||||||||||||| ||||||||||||||| || | ||||||||
Sbjct: 596 tatgttaggtagacagcatcctgaacaa-ctgttaattgtacccgcttaacagcagctat 654
Query: 966 gtgcacttcaggaac 980
|||||||||||||||
Sbjct: 655 gtgcacttcaggaac 669
>gb|BM323763.1|BM323763 PIC1_23_B05.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 566
Score = 702 bits (354), Expect = 0.0
Identities = 452/485 (93%), Gaps = 6/485 (1%)
Strand = Plus / Plus
Query: 92 ggaggcgaaggagaggcgaatggcatcccgccgaacgtcaccatctatatcaacaacctc 151
|||||||| |||||| |||| ||| ||| |||||||||||||||||| ||||||||||||
Sbjct: 88 ggaggcgagggagagacgaacggcgtccagccgaacgtcaccatctacatcaacaacctc 147
Query: 152 aacgagaagatcaagctcgaagaacttaagaagtccctaacagccgttttttcccagttt 211
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 148 aacgagaagatcaagctcgaagaacttaagaagtccctaactgccgttttttcccagttt 207
Query: 212 gggaaaattcttgatgtgcttgctttcaagactttgaagcataaaggtcaagcttgggtt 271
||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 208 gggaagattcttgatgtgctcgctttcaagactttgaagcataaaggccaagcttgggtt 267
Query: 272 gtcttcgaagatgtcgcatcagctactgaggctctgaagaggatgcagggctttcccttc 331
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 268 gtcttcgaagatgtcgcatcagcgactgaggctctcaagaggatgcagggatttcccttc 327
Query: 332 tatgacaaaactatgagaattcaatatgccaagaccaaatcagatattatagcaaaggct 391
|||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct: 328 tatgacaaaactatgagaattcaatatgccaagaccaagtcggatattgtagcaaaggcc 387
Query: 392 gatggcacctttgtacctcgagaaagaagaaagaggactgatgaaaaatctgaaaagaag 451
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 388 gatggcacctttgtacctcgagaaagaagaaagagggtcgatgaaaaacctgaaaagaag 447
Query: 452 cagaagcgcgagcatcaccatgatgctggtgctagtcaaattggcatgggtgtaactgct 511
|||||||||||||| |||||||| ||||||||||||||| |||||||||| ||||
Sbjct: 448 cagaagcgcgagcaccaccatga------tgctagtcaaattgggatgggtgtaaatgct 501
Query: 512 taccctggtgtttatggggctccacagctcacccagatacctatagcaggaggacaaagg 571
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 502 taccctggtgtatatggggctccacagctcacccagatacctatagctggaggacagagg 561
Query: 572 gtcat 576
|||||
Sbjct: 562 gtcat 566
>gb|CF757391.1|CF757391 DSAF1_17_D01.g1_A011 Drought-stressed after flowering Sorghum bicolor
cDNA clone DSAF1_17_D01_A011 3', mRNA sequence
Length = 484
Score = 620 bits (313), Expect = e-176
Identities = 440/477 (92%), Gaps = 4/477 (0%)
Strand = Plus / Plus
Query: 528 gggctccacagctcacccagatacctatagcaggaggacaaagggtcatgatgccagaga 587
||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct: 1 gggctccacagctcacccagatacctatagctggaggacagagggtcattatgccagaga 60
Query: 588 ttatcgtaccaaacaacatcttgtttgtccaaaacttgccacacgagacgacgcccatga 647
|||||||||||||||||||| |||| ||||||||| ||||||||||||| || |||||||
Sbjct: 61 ttatcgtaccaaacaacatcctgttcgtccaaaacctgccacacgagacaacacccatga 120
Query: 648 tgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcgaggcga 707
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 121 tgctccagatgctcttttgccagtaccctggcttcaaggaggttcggatggtcgaggcga 180
Query: 708 agcctgggattgctttcgtggagtatggagacgagacccaggccactgctgccatgaaca 767
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 181 agcctgggattgctttcgtggagtatggagacgaggggcaggccactgctgccatgaaca 240
Query: 768 accttcaaagcttcaaaattacaaaagaaaaccagatggtcatcacatatgcgaagaagt 827
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 241 accttcaaagcttcaagattacaaaagaaaaccagatggtcatcacatacgcgaagaagt 300
Query: 828 aatgagctcccgagcaatgttta-cctgatgtgtgagatgttgtattccgag-ttttaca 885
|| | ||||||||| |||| | |||||| ||| | ||||||||||||||| |||| ||
Sbjct: 301 aacaacctcccgagctgtgttgaccctgatctgttaaatgttgtattccgagtttttgca 360
Query: 886 caactggtaaatttccttcatgtgttaggtagacagcatcctgaacaacctgttaattgt 945
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 361 caactggtagatttccttcatatgttaggtagacagcatcctgaacaa-ctgttaattgt 419
Query: 946 acccactgggctgc-agctatgtgcacttcaggaacggagatgaaatgcaaactgtt 1001
|||| || | || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 420 acccgcttaacagcaagctatgtgcacttcaggaactgagatgaaatgcaaactgtt 476
>gb|CF758465.1|CF758465 DSAF1_32_C02.g1_A011 Drought-stressed after flowering Sorghum bicolor
cDNA clone DSAF1_32_C02_A011 3', mRNA sequence
Length = 451
Score = 571 bits (288), Expect = e-161
Identities = 409/444 (92%), Gaps = 4/444 (0%)
Strand = Plus / Plus
Query: 561 gaggacaaagggtcatgatgccagagattatcgtaccaaacaacatcttgtttgtccaaa 620
||||||| |||||||| |||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 1 gaggacagagggtcattatgccagagattatcgtaccaaacaacatcctgttcgtccaaa 60
Query: 621 acttgccacacgagacgacgcccatgatgctccagatgctcttctgccagtaccctggct 680
|| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acctgccacacgagacaacacccatgatgctccagatgctcttctgccagtaccctggct 120
Query: 681 tcaaggaggttcggatgatcgaggcgaagcctgggattgctttcgtggagtatggagacg 740
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaaggaggttcggatggtcgaggcgaagcctgggattgctttcgtggagtatggagacg 180
Query: 741 agacccaggccactgctgccatgaacaaccttcaaagcttcaaaattacaaaagaaaacc 800
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 181 aggggcaggccactgctgccatgaacaaccttcaaagcttcaagattacaaaagaaaacc 240
Query: 801 agatggtcatcacatatgcgaagaagtaatgagctcccgagcaatgttta-cctgatgtg 859
|||||||||||||||| |||||||||||| | ||||||||| |||| | |||||| ||
Sbjct: 241 agatggtcatcacatacgcgaagaagtaacaacctcccgagctgtgttgaccctgatctg 300
Query: 860 tgagatgttgtattccgag-ttttacacaactggtaaatttccttcatgtgttaggtaga 918
| | ||||||||||||||| |||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 301 ttaaatgttgtattccgagtttttgcacaactggtagatttccttcatatgttaggtaga 360
Query: 919 cagcatcctgaacaacctgttaattgtacccactgggctgcagc-tatgtgcacttcagg 977
||||||||||||||| ||||||||||||||| || | ||||| |||||||||||||||
Sbjct: 361 cagcatcctgaacaa-ctgttaattgtacccgcttaacagcagcttatgtgcacttcagg 419
Query: 978 aacggagatgaaatgcaaactgtt 1001
||| ||||||||||||||||||||
Sbjct: 420 aactgagatgaaatgcaaactgtt 443
>gb|BM328273.1|BM328273 PIC1_23_B05.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 424
Score = 553 bits (279), Expect = e-155
Identities = 387/419 (92%), Gaps = 3/419 (0%)
Strand = Plus / Plus
Query: 585 agattatcgtaccaaacaacatcttgtttgtccaaaacttgccacacgagacgacgccca 644
||||||||||||||||||||||| |||| ||||||||| ||||||||||||| || ||||
Sbjct: 1 agattatcgtaccaaacaacatcctgttcgtccaaaacctgccacacgagacaacaccca 60
Query: 645 tgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcgagg 704
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 61 tgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatggtcgagg 120
Query: 705 cgaagcctgggattgctttcgtggagtatggagacgagacccaggccactgctgccatga 764
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 121 cgaagcctgggattgctttcgtggagtatggagacgaggggcaggccactgctgccatga 180
Query: 765 acaaccttcaaagcttcaaaattacaaaagaaaaccagatggtcatcacatatgcgaaga 824
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 181 acaaccttcaaagcttcaagattacaaaagaaaaccagatggtcatcacatacgcgaaga 240
Query: 825 agtaatgagctcccgagcaatgttta-cctgatgtgtgagatgttgtattccgag-tttt 882
||||| | ||||||||| |||| | |||||| ||| | ||||||||||||||| ||||
Sbjct: 241 agtaacaacctcccgagctgtgttgaccctgatctgttaaatgttgtattccgagttttt 300
Query: 883 acacaactggtaaatttccttcatgtgttaggtagacagcatcctgaacaacctgttaat 942
||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 301 gcacaactggtagatttccttcatatgttaggtagacagcatcctgaacaa-ctgttaat 359
Query: 943 tgtacccactgggctgcagctatgtgcacttcaggaacggagatgaaatgcaaactgtt 1001
||||||| || | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 360 tgtacccgcttaacagcagctatgtgcacttcaggaactgagatgaaatgcaaactgtt 418
>gb|AW746901.1|AW746901 WS1_56_G10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 442
Score = 511 bits (258), Expect = e-143
Identities = 309/326 (94%)
Strand = Plus / Plus
Query: 92 ggaggcgaaggagaggcgaatggcatcccgccgaacgtcaccatctatatcaacaacctc 151
|||||||| |||||| |||| ||| ||| |||||||||||||||||| ||||||||||||
Sbjct: 117 ggaggcgagggagagacgaacggcgtccagccgaacgtcaccatctacatcaacaacctc 176
Query: 152 aacgagaagatcaagctcgaagaacttaagaagtccctaacagccgttttttcccagttt 211
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 177 aacgagaagatcaagctcgaagaacttaagaagtccctaactgccgttttttcccagttt 236
Query: 212 gggaaaattcttgatgtgcttgctttcaagactttgaagcataaaggtcaagcttgggtt 271
||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 237 gggaagattcttgatgtgctcgctttcaagactttgaagcataaaggccaagcttgggtt 296
Query: 272 gtcttcgaagatgtcgcatcagctactgaggctctgaagaggatgcagggctttcccttc 331
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 297 gtcttcgaagatgtcgcatcagcgactgaggctctcaagaggatgcagggatttcccttc 356
Query: 332 tatgacaaaactatgagaattcaatatgccaagaccaaatcagatattatagcaaaggct 391
|||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct: 357 tatgacaaaactatgagaattcaatatgccaagaccaagtcggatattgtagcaaaggcc 416
Query: 392 gatggcacctttgtacctcgagaaag 417
||||||||||||||||||||||||||
Sbjct: 417 gatggcacctttgtacctcgagaaag 442
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 14 gagagagaaagttctcgagctagacgagcgccgtgcgaggagaga 58
|||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct: 9 gagagagagagttctcgagctcgacgagcgccgcccgaggagaga 53
>gb|CW191867.1|CW191867 104_614_11178724_148_36945_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11178724, DNA
sequence
Length = 425
Score = 468 bits (236), Expect = e-130
Identities = 332/360 (92%), Gaps = 3/360 (0%)
Strand = Plus / Plus
Query: 644 atgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatgatcgag 703
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 atgatgctccagatgctcttctgccagtaccctggcttcaaggaggttcggatggtcgag 60
Query: 704 gcgaagcctgggattgctttcgtggagtatggagacgagacccaggccactgctgccatg 763
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61 gcgaagcctgggattgctttcgtggagtatggagacgaggggcaggccactgctgccatg 120
Query: 764 aacaaccttcaaagcttcaaaattacaaaagaaaaccagatggtcatcacatatgcgaag 823
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 121 aacaaccttcaaagcttcaagattacaaaagaaaaccagatggtcatcacatacgcgaag 180
Query: 824 aagtaatgagctcccgagcaatgttta-cctgatgtgtgagatgttgtattccgag-ttt 881
|||||| | ||||||||| |||| | |||||| ||| | ||||||||||||||| |||
Sbjct: 181 aagtaacaacctcccgagctgtgttgaccctgatctgttaaatgttgtattccgagtttt 240
Query: 882 tacacaactggtaaatttccttcatgtgttaggtagacagcatcctgaacaacctgttaa 941
| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 241 tgcacaactggtagatttccttcatatgttaggtagacagcatcctgaacaa-ctgttaa 299
Query: 942 ttgtacccactgggctgcagctatgtgcacttcaggaacggagatgaaatgcaaactgtt 1001
|||||||| || | ||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 300 ttgtacccgcttaacagcagctatgtgcacttcaggaactgagatgaaatgcacactgtt 359
>gb|CW433316.1|CW433316 fsbb001f148h19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f148h19, DNA
sequence
Length = 799
Score = 291 bits (147), Expect = 7e-077
Identities = 168/175 (96%)
Strand = Plus / Plus
Query: 172 agaacttaagaagtccctaacagccgttttttcccagtttgggaaaattcttgatgtgct 231
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 151 agaacttaagaagtccctaactgccgttttttcccagtttgggaagattcttgatgtgct 210
Query: 232 tgctttcaagactttgaagcataaaggtcaagcttgggttgtcttcgaagatgtcgcatc 291
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 211 cgctttcaagactttgaagcataaaggccaagcttgggttgtcttcgaagatgtcgcatc 270
Query: 292 agctactgaggctctgaagaggatgcagggctttcccttctatgacaaaactatg 346
||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 271 agcgactgaggctctcaagaggatgcagggatttcccttctatgacaaaactatg 325
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 346 gagaattcaatatgccaagaccaa 369
|||||||||||||||| |||||||
Sbjct: 763 gagaattcaatatgcccagaccaa 786
>gb|CW172533.1|CW172533 104_583_11156341_148_36538_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156341, DNA
sequence
Length = 630
Score = 167 bits (84), Expect = 3e-039
Identities = 96/100 (96%)
Strand = Plus / Minus
Query: 172 agaacttaagaagtccctaacagccgttttttcccagtttgggaaaattcttgatgtgct 231
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 100 agaacttaagaagtccctaactgccgttttttcccagtttgggaagattcttgatgtgct 41
Query: 232 tgctttcaagactttgaagcataaaggtcaagcttgggtt 271
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 40 cgctttcaagactttgaagcataaaggccaagcttgggtt 1
>gb|BI245583.1|BI245583 IP1_67_D10.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 148
Score = 125 bits (63), Expect = 9e-027
Identities = 122/139 (87%), Gaps = 2/139 (1%)
Strand = Plus / Plus
Query: 864 atgttgtattccgagtttta-cacaactggtaaatttccttcatgtgttaggtagacagc 922
||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||| ||||
Sbjct: 7 atgttgtattccgagtttttgcacaaatggtagatttccttcatacgttaggtagccagc 66
Query: 923 atcctgaacaacctgttaattgtacccactgggctgcagctatgtgcacttcaggaacgg 982
||| |||||||| ||||||| |||||| || | |||||||||||||||||||||| |
Sbjct: 67 atcgtgaacaac-tgttaatggtacccgcttaacagcagctatgtgcacttcaggaagtg 125
Query: 983 agatgaaatgcaaactgtt 1001
|||||||||||||||||||
Sbjct: 126 agatgaaatgcaaactgtt 144
>gb|CW433317.1|CW433317 fsbb001f148h19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f148h19, DNA
sequence
Length = 794
Score = 117 bits (59), Expect = 2e-024
Identities = 88/98 (89%), Gaps = 6/98 (6%)
Strand = Plus / Minus
Query: 441 ctgaaaagaagcagaagcgcgagcatcaccatgatgctggtgctagtcaaattggcatgg 500
||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||
Sbjct: 339 ctgaaaagaagcagaagcgcgagcaccaccatgatgct------agtcaaattgggatgg 286
Query: 501 gtgtaactgcttaccctggtgtttatggggctccacag 538
|||||| ||||||||||||||| |||||||||||||||
Sbjct: 285 gtgtaaatgcttaccctggtgtatatggggctccacag 248
>gb|CW212338.1|CW212338 104_643_11190971_116_37018_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11190971, DNA
sequence
Length = 557
Score = 115 bits (58), Expect = 9e-024
Identities = 76/82 (92%)
Strand = Plus / Minus
Query: 92 ggaggcgaaggagaggcgaatggcatcccgccgaacgtcaccatctatatcaacaacctc 151
|||||||| |||||| |||| ||| ||| |||||||||||||||||| ||||||||||||
Sbjct: 237 ggaggcgagggagagacgaacggcgtccagccgaacgtcaccatctacatcaacaacctc 178
Query: 152 aacgagaagatcaagctcgaag 173
||||||||||||||||||||||
Sbjct: 177 aacgagaagatcaagctcgaag 156
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 14 gagagagaaagttctcgagctagacgagcgccgtgcgaggagaga 58
|||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct: 345 gagagagagagttctcgagctcgacgagcgccgcccgaggagaga 301
>gb|CW297055.1|CW297055 104_779_11461840_116_35637_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461840, DNA
sequence
Length = 708
Score = 115 bits (58), Expect = 9e-024
Identities = 76/82 (92%)
Strand = Plus / Minus
Query: 92 ggaggcgaaggagaggcgaatggcatcccgccgaacgtcaccatctatatcaacaacctc 151
|||||||| |||||| |||| ||| ||| |||||||||||||||||| ||||||||||||
Sbjct: 533 ggaggcgagggagagacgaacggcgtccagccgaacgtcaccatctacatcaacaacctc 474
Query: 152 aacgagaagatcaagctcgaag 173
||||||||||||||||||||||
Sbjct: 473 aacgagaagatcaagctcgaag 452
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 14 gagagagaaagttctcgagctagacgagcgccgtgcgaggagaga 58
|||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct: 641 gagagagagagttctcgagctcgacgagcgccgcccgaggagaga 597
>gb|CW297056.1|CW297056 104_779_11461840_148_35641_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461840, DNA
sequence
Length = 687
Score = 115 bits (58), Expect = 9e-024
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 92 ggaggcgaaggagaggcgaatggcatcccgccgaacgtcaccatctatatcaacaacctc 151
|||||||| |||||| |||| ||| ||| |||||||||||||||||| ||||||||||||
Sbjct: 232 ggaggcgagggagagacgaacggcgtccagccgaacgtcaccatctacatcaacaacctc 291
Query: 152 aacgagaagatcaagctcgaag 173
||||||||||||||||||||||
Sbjct: 292 aacgagaagatcaagctcgaag 313
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 14 gagagagaaagttctcgagctagacgagcgccgtgcgaggagaga 58
|||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct: 124 gagagagagagttctcgagctcgacgagcgccgcccgaggagaga 168
>gb|CW405270.1|CW405270 fsbb001f097m04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f097m04, DNA
sequence
Length = 524
Score = 115 bits (58), Expect = 9e-024
Identities = 76/82 (92%)
Strand = Plus / Minus
Query: 92 ggaggcgaaggagaggcgaatggcatcccgccgaacgtcaccatctatatcaacaacctc 151
|||||||| |||||| |||| ||| ||| |||||||||||||||||| ||||||||||||
Sbjct: 107 ggaggcgagggagagacgaacggcgtccagccgaacgtcaccatctacatcaacaacctc 48
Query: 152 aacgagaagatcaagctcgaag 173
||||||||||||||||||||||
Sbjct: 47 aacgagaagatcaagctcgaag 26
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 14 gagagagaaagttctcgagctagacgagcgccgtgcgaggagaga 58
|||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct: 215 gagagagagagttctcgagctcgacgagcgccgcccgaggagaga 171
>gb|CW447185.1|CW447185 fsbb001f180d05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f180d05, DNA
sequence
Length = 657
Score = 115 bits (58), Expect = 9e-024
Identities = 76/82 (92%)
Strand = Plus / Minus
Query: 92 ggaggcgaaggagaggcgaatggcatcccgccgaacgtcaccatctatatcaacaacctc 151
|||||||| |||||| |||| ||| ||| |||||||||||||||||| ||||||||||||
Sbjct: 492 ggaggcgagggagagacgaacggcgtccagccgaacgtcaccatctacatcaacaacctc 433
Query: 152 aacgagaagatcaagctcgaag 173
||||||||||||||||||||||
Sbjct: 432 aacgagaagatcaagctcgaag 411
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 14 gagagagaaagttctcgagctagacgagcgccgtgcgaggagaga 58
|||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct: 600 gagagagagagttctcgagctcgacgagcgccgcccgaggagaga 556
>gb|CW459222.1|CW459222 fsbb001f205n19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f205n19, DNA
sequence
Length = 673
Score = 115 bits (58), Expect = 9e-024
Identities = 76/82 (92%)
Strand = Plus / Minus
Query: 92 ggaggcgaaggagaggcgaatggcatcccgccgaacgtcaccatctatatcaacaacctc 151
|||||||| |||||| |||| ||| ||| |||||||||||||||||| ||||||||||||
Sbjct: 502 ggaggcgagggagagacgaacggcgtccagccgaacgtcaccatctacatcaacaacctc 443
Query: 152 aacgagaagatcaagctcgaag 173
||||||||||||||||||||||
Sbjct: 442 aacgagaagatcaagctcgaag 421
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 14 gagagagaaagttctcgagctagacgagcgccgtgcgaggagaga 58
|||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct: 610 gagagagagagttctcgagctcgacgagcgccgcccgaggagaga 566
>gb|CW247030.1|CW247030 104_707_11221579_148_35088_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221579, DNA
sequence
Length = 689
Score = 73.8 bits (37), Expect = 3e-011
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 615 tccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccagtacc 674
|||| ||||||||| || |||| ||| ||||||||||||||| || ||| |||||||
Sbjct: 277 tccagaacttgccagaccagaccacgagcatgatgctccagatcctgttccagcagtacc 218
Query: 675 ctggcttcaaggaggttcggatgatcgaggcgaagcctgggattgctttcgtggagt 731
||||||||| ||| || ||||||||||| || || || || |||||||| |||||||
Sbjct: 217 ctggcttcagggaagtgcggatgatcgaagccaaaccaggcattgcttttgtggagt 161
>gb|CW247031.1|CW247031 104_707_11221579_148_37606_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221579, DNA
sequence
Length = 706
Score = 73.8 bits (37), Expect = 3e-011
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 615 tccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccagtacc 674
|||| ||||||||| || |||| ||| ||||||||||||||| || ||| |||||||
Sbjct: 277 tccagaacttgccagaccagaccacgagcatgatgctccagatcctgttccagcagtacc 218
Query: 675 ctggcttcaaggaggttcggatgatcgaggcgaagcctgggattgctttcgtggagt 731
||||||||| ||| || ||||||||||| || || || || |||||||| |||||||
Sbjct: 217 ctggcttcagggaagtgcggatgatcgaagccaaaccaggcattgcttttgtggagt 161
>gb|AW924477.1|AW924477 WS1_69_H03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 466
Score = 73.8 bits (37), Expect = 3e-011
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 615 tccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccagtacc 674
|||| ||||||||| || |||| ||| ||||||||||||||| || ||| |||||||
Sbjct: 84 tccagaacttgccagaccagaccacgagcatgatgctccagatcctgttccagcagtacc 143
Query: 675 ctggcttcaaggaggttcggatgatcgaggcgaagcctgggattgctttcgtggagt 731
||||||||| ||| || ||||||||||| || || || || |||||||| |||||||
Sbjct: 144 ctggcttcagggaagtgcggatgatcgaagccaaaccaggcattgcttttgtggagt 200
>gb|BE363755.1|BE363755 WS1_69_G03.g2_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 682
Score = 73.8 bits (37), Expect = 3e-011
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 615 tccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccagtacc 674
|||| ||||||||| || |||| ||| ||||||||||||||| || ||| |||||||
Sbjct: 337 tccagaacttgccagaccagaccacgagcatgatgctccagatcctgttccagcagtacc 396
Query: 675 ctggcttcaaggaggttcggatgatcgaggcgaagcctgggattgctttcgtggagt 731
||||||||| ||| || ||||||||||| || || || || |||||||| |||||||
Sbjct: 397 ctggcttcagggaagtgcggatgatcgaagccaaaccaggcattgcttttgtggagt 453
>gb|BE363765.1|BE363765 WS1_69_H03.g2_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 689
Score = 73.8 bits (37), Expect = 3e-011
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 615 tccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccagtacc 674
|||| ||||||||| || |||| ||| ||||||||||||||| || ||| |||||||
Sbjct: 336 tccagaacttgccagaccagaccacgagcatgatgctccagatcctgttccagcagtacc 395
Query: 675 ctggcttcaaggaggttcggatgatcgaggcgaagcctgggattgctttcgtggagt 731
||||||||| ||| || ||||||||||| || || || || |||||||| |||||||
Sbjct: 396 ctggcttcagggaagtgcggatgatcgaagccaaaccaggcattgcttttgtggagt 452
>gb|BM327391.1|BM327391 PIC1_14_B09.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 546
Score = 73.8 bits (37), Expect = 3e-011
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 615 tccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccagtacc 674
|||| ||||||||| || |||| ||| ||||||||||||||| || ||| |||||||
Sbjct: 178 tccagaacttgccagaccagaccacgagcatgatgctccagatcctgttccagcagtacc 237
Query: 675 ctggcttcaaggaggttcggatgatcgaggcgaagcctgggattgctttcgtggagt 731
||||||||| ||| || ||||||||||| || || || || |||||||| |||||||
Sbjct: 238 ctggcttcagggaagtgcggatgatcgaagccaaaccaggcattgcttttgtggagt 294
>gb|BM327400.1|BM327400 PIC1_14_C09.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 608
Score = 73.8 bits (37), Expect = 3e-011
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 615 tccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccagtacc 674
|||| ||||||||| || |||| ||| ||||||||||||||| || ||| |||||||
Sbjct: 240 tccagaacttgccagaccagaccacgagcatgatgctccagatcctgttccagcagtacc 299
Query: 675 ctggcttcaaggaggttcggatgatcgaggcgaagcctgggattgctttcgtggagt 731
||||||||| ||| || ||||||||||| || || || || |||||||| |||||||
Sbjct: 300 ctggcttcagggaagtgcggatgatcgaagccaaaccaggcattgcttttgtggagt 356
>gb|CF770501.1|CF770501 DSBF1_8_D05.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_8_D05_A010 5', mRNA sequence
Length = 600
Score = 73.8 bits (37), Expect = 3e-011
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 615 tccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccagtacc 674
|||| ||||||||| || |||| ||| ||||||||||||||| || ||| |||||||
Sbjct: 453 tccagaacttgccagaccagaccacgagcatgatgctccagatcctgttccagcagtacc 512
Query: 675 ctggcttcaaggaggttcggatgatcgaggcgaagcctgggattgctttcgtggagt 731
||||||||| ||| || ||||||||||| || || || || |||||||| |||||||
Sbjct: 513 ctggcttcagggaagtgcggatgatcgaagccaaaccaggcattgcttttgtggagt 569
Score = 44.1 bits (22), Expect = 0.027
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 141 tcaacaacctcaacgagaagatcaag 166
|||||||||||||||||||| |||||
Sbjct: 6 tcaacaacctcaacgagaaggtcaag 31
>gb|CF770591.1|CF770591 DSBF1_8_D05.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_8_D05_A010 3', mRNA sequence
Length = 652
Score = 73.8 bits (37), Expect = 3e-011
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 615 tccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccagtacc 674
|||| ||||||||| || |||| ||| ||||||||||||||| || ||| |||||||
Sbjct: 254 tccagaacttgccagaccagaccacgagcatgatgctccagatcctgttccagcagtacc 313
Query: 675 ctggcttcaaggaggttcggatgatcgaggcgaagcctgggattgctttcgtggagt 731
||||||||| ||| || ||||||||||| || || || || |||||||| |||||||
Sbjct: 314 ctggcttcagggaagtgcggatgatcgaagccaaaccaggcattgcttttgtggagt 370
>gb|CF756334.1|CF756334 DSAF1_5_A09.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_5_A09_A011 5', mRNA sequence
Length = 421
Score = 71.9 bits (36), Expect = 1e-010
Identities = 93/112 (83%)
Strand = Plus / Plus
Query: 620 aacttgccacacgagacgacgcccatgatgctccagatgctcttctgccagtaccctggc 679
||||||||| || |||| ||| ||||||||||||||| || ||| ||||||||||||
Sbjct: 5 aacttgccagaccagaccacgagcatgatgctccagatcctgttccagcagtaccctggc 64
Query: 680 ttcaaggaggttcggatgatcgaggcgaagcctgggattgctttcgtggagt 731
|||| ||| || ||||||||||| || || || || |||||||| |||||||
Sbjct: 65 ttcagggaagtgcggatgatcgaagccaaaccaggcattgcttttgtggagt 116
>gb|CF756424.1|CF756424 DSAF1_5_A09.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_5_A09_A011 3', mRNA sequence
Length = 402
Score = 71.9 bits (36), Expect = 1e-010
Identities = 93/112 (83%)
Strand = Plus / Plus
Query: 620 aacttgccacacgagacgacgcccatgatgctccagatgctcttctgccagtaccctggc 679
||||||||| || |||| ||| ||||||||||||||| || ||| ||||||||||||
Sbjct: 5 aacttgccagaccagaccacgagcatgatgctccagatcctgttccagcagtaccctggc 64
Query: 680 ttcaaggaggttcggatgatcgaggcgaagcctgggattgctttcgtggagt 731
|||| ||| || ||||||||||| || || || || |||||||| |||||||
Sbjct: 65 ttcagggaagtgcggatgatcgaagccaaaccaggcattgcttttgtggagt 116
>gb|CW188215.1|CW188215 104_607_11172910_116_36728_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172910, DNA
sequence
Length = 761
Score = 63.9 bits (32), Expect = 3e-008
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 620 aacttgccacacgagacgacgcccatgatgctccagatgctcttctgccagtaccctggc 679
||||||||| || |||| ||| ||||||||||||||| || ||| ||||||||||||
Sbjct: 757 aacttgccagaccagaccacgagcatgatgctccagatcctgttccagcagtaccctggc 698
Query: 680 ttcaaggaggttcggatgatcgaggcgaagcctgggattgcttt 723
|||| ||| || ||||||||||| || || || || ||||||||
Sbjct: 697 ttcagggaagtgcggatgatcgaagccaaaccaggcattgcttt 654
>gb|CW172532.1|CW172532 104_583_11156341_116_36537_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11156341, DNA
sequence
Length = 441
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 14 gagagagaaagttctcgagctagacgagcgccgtgcgaggagaga 58
|||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct: 355 gagagagagagttctcgagctcgacgagcgccgcccgaggagaga 399
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 63 agatgagcggtgaggcggcggccg 86
|||||||||| |||||||||||||
Sbjct: 413 agatgagcggcgaggcggcggccg 436
>gb|CW212339.1|CW212339 104_643_11190971_148_37019_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11190971, DNA
sequence
Length = 335
Score = 58.0 bits (29), Expect = 2e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 14 gagagagaaagttctcgagctagacgagcgccgtgcgaggagaga 58
|||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct: 215 gagagagagagttctcgagctcgacgagcgccgcccgaggagaga 259
>gb|AW680592.1|AW680592 WS1_6_B01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 511
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 131 accatctatatcaacaacctcaacgagaagatcaag 166
|||||||| |||||||||||||||||||| |||||
Sbjct: 97 accatctacctcaacaacctcaacgagaaggtcaag 132
>gb|AW924371.1|AW924371 WS1_69_G03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 544
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 131 accatctatatcaacaacctcaacgagaagatcaag 166
|||||||| |||||||||||||||||||| |||||
Sbjct: 97 accatctacctcaacaacctcaacgagaaggtcaag 132
>gb|AW924382.1|AW924382 WS1_69_H03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 610
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 131 accatctatatcaacaacctcaacgagaagatcaag 166
|||||||| |||||||||||||||||||| |||||
Sbjct: 97 accatctacctcaacaacctcaacgagaaggtcaag 132
>gb|BE366961.1|BE366961 PI1_42_D11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 510
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 131 accatctatatcaacaacctcaacgagaagatcaag 166
|||||||| |||||||||||||||||||| |||||
Sbjct: 94 accatctacctcaacaacctcaacgagaaggtcaag 129
>gb|BM322857.1|BM322857 PIC1_14_B09.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 562
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 131 accatctatatcaacaacctcaacgagaagatcaag 166
|||||||| |||||||||||||||||||| |||||
Sbjct: 101 accatctacctcaacaacctcaacgagaaggtcaag 136
>gb|BM322868.1|BM322868 PIC1_14_C09.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 566
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 131 accatctatatcaacaacctcaacgagaagatcaag 166
|||||||| |||||||||||||||||||| |||||
Sbjct: 101 accatctacctcaacaacctcaacgagaaggtcaag 136
>gb|BZ331087.1|BZ331087 hw06b08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hw06b08 5', DNA sequence
Length = 361
Score = 40.1 bits (20), Expect = 0.42
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 429 ctgatgaaaaatctgaaaag 448
||||||||||||||||||||
Sbjct: 18 ctgatgaaaaatctgaaaag 37
>gb|CL188041.1|CL188041 104_404_10901310_114_32445_029 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901310, DNA
sequence
Length = 698
Score = 40.1 bits (20), Expect = 0.42
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 71 ggtgaggcggcggccgtggg 90
||||||||||||||||||||
Sbjct: 429 ggtgaggcggcggccgtggg 410
>gb|CW098318.1|CW098318 104_464_11002942_116_34363_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002942, DNA
sequence
Length = 659
Score = 40.1 bits (20), Expect = 0.42
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 796 aaaccagatggtcatcacat 815
||||||||||||||||||||
Sbjct: 509 aaaccagatggtcatcacat 490
>gb|CW300570.1|CW300570 104_784_11463737_116_36257_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463737, DNA
sequence
Length = 592
Score = 40.1 bits (20), Expect = 0.42
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 71 ggtgaggcggcggccgtggg 90
||||||||||||||||||||
Sbjct: 475 ggtgaggcggcggccgtggg 456
>gb|CW300571.1|CW300571 104_784_11463737_148_36258_079 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463737, DNA
sequence
Length = 510
Score = 40.1 bits (20), Expect = 0.42
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 ggtgaggcggcggccgtggg 90
||||||||||||||||||||
Sbjct: 332 ggtgaggcggcggccgtggg 351
>gb|CW303584.1|CW303584 104_788_11465317_148_35697_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11465317, DNA
sequence
Length = 648
Score = 40.1 bits (20), Expect = 0.42
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 71 ggtgaggcggcggccgtggg 90
||||||||||||||||||||
Sbjct: 428 ggtgaggcggcggccgtggg 409
>gb|CW334303.1|CW334303 104_832_11482427_148_36053_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11482427, DNA
sequence
Length = 620
Score = 40.1 bits (20), Expect = 0.42
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 ggtgaggcggcggccgtggg 90
||||||||||||||||||||
Sbjct: 139 ggtgaggcggcggccgtggg 158
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 300,842
Number of Sequences: 832831
Number of extensions: 300842
Number of successful extensions: 82728
Number of sequences better than 0.5: 44
Number of HSP's better than 0.5 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82629
Number of HSP's gapped (non-prelim): 78
length of query: 1096
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1076
effective length of database: 474,703,049
effective search space: 510780480724
effective search space used: 510780480724
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)