BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969912.2.1
(507 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG557816.1|BG557816 EM1_53_F09.b1_A002 Embryo 1 (EM1) So... 595 e-168
gb|CF756225.1|CF756225 DSAF1_4_G03.b1_A011 Drought-stressed... 363 1e-098
gb|CF756413.1|CF756413 DSAF1_5_H08.b1_A011 Drought-stressed... 355 3e-096
gb|BE592843.1|BE592843 WS1_91_B04.b1_A002 Water-stressed 1 ... 329 1e-088
gb|CW489883.1|CW489883 fsbb001f275a24k0 Sorghum methylation... 291 3e-077
gb|CW044414.1|CW044414 104_280_10508936_115_30243 Sorghum m... 289 1e-076
gb|CW487378.1|CW487378 fsbb001f253d08k0 Sorghum methylation... 220 1e-055
gb|CW456088.1|CW456088 fsbb001f201e14f0 Sorghum methylation... 188 3e-046
gb|CW454707.1|CW454707 fsbb001f199e17f0 Sorghum methylation... 131 7e-029
gb|CW456089.1|CW456089 fsbb001f201e14k0 Sorghum methylation... 121 7e-026
gb|CW454708.1|CW454708 fsbb001f199e17k0 Sorghum methylation... 76 3e-012
gb|CF756307.1|CF756307 DSAF1_4_G03.g1_A011 Drought-stressed... 72 5e-011
gb|CW175958.1|CW175958 104_588_11158231_148_36575_020 Sorgh... 70 2e-010
gb|CW162184.1|CW162184 104_569_11150811_148_36439_010 Sorgh... 52 5e-005
gb|CW216905.1|CW216905 104_649_11195370_116_37128_065 Sorgh... 52 5e-005
gb|CW273767.1|CW273767 104_746_11404076_148_35369_074 Sorgh... 52 5e-005
gb|CW295946.1|CW295946 104_777_11461224_148_35625_088 Sorgh... 52 5e-005
gb|CB925802.1|CB925802 ABA1_23_F05.g1_A012 Abscisic acid-tr... 52 5e-005
gb|CF428334.1|CF428334 PH1_14_C04.g1_A002 Phosphorous-defic... 52 5e-005
gb|CW353195.1|CW353195 fsbb001f015n13k0 Sorghum methylation... 48 8e-004
gb|CB925645.1|CB925645 ABA1_22_G02.g1_A012 Abscisic acid-tr... 48 8e-004
gb|CB926819.1|CB926819 ABA1_10_G05.g1_A012 Abscisic acid-tr... 48 8e-004
gb|CD228254.1|CD228254 CCC1_6_B12.g1_A007 Callus culture/ce... 48 8e-004
gb|CN145669.1|CN145669 WOUND1_34_B03.g1_A002 Wounded leaves... 48 8e-004
gb|CN147237.1|CN147237 WOUND1_48_B05.g1_A002 Wounded leaves... 48 8e-004
gb|CX619593.1|CX619593 GABR1_46_B10.g1_A002 GA- or brassino... 48 8e-004
gb|BH245547.1|BH245547 pSB0878 S. bicolor BTx623 PstI-diges... 46 0.003
gb|CL153319.1|CL153319 104_337_10780629_116_31368_261 Sorgh... 46 0.003
gb|CW307337.1|CW307337 104_795_11468086_148_36060_089 Sorgh... 46 0.003
gb|CW487377.1|CW487377 fsbb001f253d08f0 Sorghum methylation... 46 0.003
gb|BZ336368.1|BZ336368 hz33f08.g1 WGS-SbicolorF (JM107 adap... 44 0.012
gb|CW021210.1|CW021210 104_109_10409416_114_30492 Sorghum m... 44 0.012
gb|CW217706.1|CW217706 104_651_11195794_116_37071_047 Sorgh... 44 0.012
gb|CW359843.1|CW359843 fsbb001f027k11f0 Sorghum methylation... 44 0.012
gb|BM323476.1|BM323476 PIC1_19_G04.b1_A002 Pathogen-infecte... 44 0.012
gb|CD225805.1|CD225805 CCC1_41_H04.g1_A007 Callus culture/c... 44 0.012
gb|CF480908.1|CF480908 POL1_68_F11.g1_A002 Pollen Sorghum b... 44 0.012
gb|CN152656.1|CN152656 WOUND1_83_A06.g1_A002 Wounded leaves... 44 0.012
gb|AW679918.1|AW679918 WS1_33_F11.g1_A002 Water-stressed 1 ... 42 0.048
gb|BM318470.1|BM318470 PI1_13_H12.b9_A002 Pathogen induced ... 42 0.048
gb|BH840756.1|BH840756 pSB-0063 pSB Sorghum bicolor genomic... 40 0.19
gb|CL152773.1|CL152773 104_336_10780217_116_31366_233 Sorgh... 40 0.19
gb|CL158104.1|CL158104 104_346_10803308_116_31376_284 Sorgh... 40 0.19
gb|CL189132.1|CL189132 104_406_10902080_114_32470_030 Sorgh... 40 0.19
gb|CW036702.1|CW036702 104_268_10503920_115_30382 Sorghum m... 40 0.19
gb|CW046958.1|CW046958 104_284_10512456_114_30219 Sorghum m... 40 0.19
gb|CW058277.1|CW058277 104_300_10518645_5_30082 Sorghum met... 40 0.19
gb|CW066114.1|CW066114 104_313_10523514_115_30149 Sorghum m... 40 0.19
gb|CW070376.1|CW070376 104_321_10526715_1_30090 Sorghum met... 40 0.19
gb|CW090536.1|CW090536 104_436_10949335_114_32604_024 Sorgh... 40 0.19
gb|CW117710.1|CW117710 104_493_11107800_116_34615_082 Sorgh... 40 0.19
gb|CW166045.1|CW166045 104_574_11152835_116_36482_038 Sorgh... 40 0.19
gb|CW222825.1|CW222825 104_658_11202582_116_37180_023 Sorgh... 40 0.19
gb|CW238871.1|CW238871 104_695_11216966_116_37419_049 Sorgh... 40 0.19
gb|CW238872.1|CW238872 104_695_11216966_148_37420_049 Sorgh... 40 0.19
gb|CW241367.1|CW241367 104_700_11218731_116_37545_008 Sorgh... 40 0.19
gb|CW241368.1|CW241368 104_700_11218731_148_37542_008 Sorgh... 40 0.19
gb|CW260036.1|CW260036 104_726_11228751_148_35186_054 Sorgh... 40 0.19
gb|CW356869.1|CW356869 fsbb001f023d05f0 Sorghum methylation... 40 0.19
gb|CW380641.1|CW380641 fsbb001f061i20f0 Sorghum methylation... 40 0.19
gb|CW453999.1|CW453999 fsbb001f198e01f0 Sorghum methylation... 40 0.19
gb|CW463184.1|CW463184 fsbb001f211k13f0 Sorghum methylation... 40 0.19
gb|CW466887.1|CW466887 fsbb001f218f08f0 Sorghum methylation... 40 0.19
gb|BE598368.1|BE598368 PI1_81_D03.g1_A002 Pathogen induced ... 40 0.19
gb|BG047558.1|BG047558 OV1_25_A03.b1_A002 Ovary 1 (OV1) Sor... 40 0.19
gb|BG463768.1|BG463768 EM1_51_G01.b1_A002 Embryo 1 (EM1) So... 40 0.19
gb|BG464453.1|BG464453 EM1_70_A02.g1_A002 Embryo 1 (EM1) So... 40 0.19
gb|BG556601.1|BG556601 EM1_37_C05.b1_A002 Embryo 1 (EM1) So... 40 0.19
gb|BG557441.1|BG557441 EM1_44_B11.b1_A002 Embryo 1 (EM1) So... 40 0.19
gb|BG557806.1|BG557806 EM1_53_E02.b1_A002 Embryo 1 (EM1) So... 40 0.19
gb|CB926653.1|CB926653 ABA1_3_G12.b1_A012 Abscisic acid-tre... 40 0.19
gb|CD204266.1|CD204266 HS1_4_F01.g1_A012 Heat-shocked seedl... 40 0.19
gb|CD206255.1|CD206255 HS1_21_F12.g1_A012 Heat-shocked seed... 40 0.19
gb|CD221204.1|CD221204 CCC1_74_C07.b1_A007 Callus culture/c... 40 0.19
gb|CD224484.1|CD224484 CCC1_34_B03.b1_A007 Callus culture/c... 40 0.19
gb|CD224923.1|CD224923 CCC1_37_H07.b1_A007 Callus culture/c... 40 0.19
gb|CD227262.1|CD227262 CCC1_50_B05.b1_A007 Callus culture/c... 40 0.19
gb|CD228148.1|CD228148 CCC1_6_D06.b1_A007 Callus culture/ce... 40 0.19
gb|CF073794.1|CF073794 FE1_12_C07.b1_A002 Iron-deficient se... 40 0.19
gb|CF480546.1|CF480546 POL1_66_A04.g1_A002 Pollen Sorghum b... 40 0.19
gb|CF482093.1|CF482093 POL1_76_C06.g1_A002 Pollen Sorghum b... 40 0.19
gb|CN135409.1|CN135409 OX1_32_D05.g1_A002 Oxidatively-stres... 40 0.19
gb|CX622992.1|CX622992 GABR1_67_D04.b1_A002 GA- or brassino... 40 0.19
>gb|BG557816.1|BG557816 EM1_53_F09.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 470
Score = 595 bits (300), Expect = e-168
Identities = 365/387 (94%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 81 tggtcaccggcgccagcggcttcatcggctcgaccctcgtccgaggcctccttggccgcg 140
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 141 gctacaacgtccgcgccggcgtcctcaaccccgatgacagggcggagacggaccacctcc 200
Query: 121 tcgcgctggggggcggcgccggcgccggccgcctcagcttcttccgctgcgacctcctgg 180
||| || | | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgatctcgccgccggcgccggcgacggccgcctcagcttcttccgctgcgacctcctgg 260
Query: 181 acggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttccacctcgcgtcac 240
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
Sbjct: 261 acggcgccgcgctgctcgacgccgcgcgcgggtgctcgggtatcttccacctcgcgtcgc 320
Query: 241 cctgcaccgtcgaccccgtcaaggacccccagaatcagctgatggtgcctgcggtggaag 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 cctgcaccgtcgaccccgtcaaggacccccagaatcagctgatggtgcccgcggtggaag 380
Query: 301 ggacgctgaacgtggtgcgcgcggncaaggacgccggcggagtgcggcgggtggtcgtga 360
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 381 ggacgcggaacgtggtgcgcgcggccaaggacgccggcggagtgcggcgggtggtggtga 440
Query: 361 cctcgtccatctcggccgtcgtgccca 387
||||||||||||||||| | |||||||
Sbjct: 441 cctcgtccatctcggccatggtgccca 467
>gb|CF756225.1|CF756225 DSAF1_4_G03.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_4_G03_A011 5', mRNA sequence
Length = 537
Score = 363 bits (183), Expect = 1e-098
Identities = 305/346 (88%)
Strand = Plus / Plus
Query: 162 ttccgctgcgacctcctggacggcgccgcgctgctcgacgcggcgcgcgggtgctcgggc 221
|||||| |||||||||| ||||||||||||||| ||||||| ||||| || ||||||||
Sbjct: 1 ttccgcggcgacctcctcgacggcgccgcgctgatcgacgccgcgcggggctgctcgggt 60
Query: 222 gtcttccacctcgcgtcaccctgcaccgtcgaccccgtcaaggacccccagaatcagctg 281
|||||||||||||| || ||||||| ||||||| |||||| ||||||||||| || |||
Sbjct: 61 gtcttccacctcgcctcgccctgcatcgtcgacgccgtcagcgacccccagaagcaactg 120
Query: 282 atggtgcctgcggtggaagggacgctgaacgtggtgcgcgcggncaaggacgccggcgga 341
|| ||||| |||||||||||||||||||||||| ||||||| | |||||| ||||| |
Sbjct: 121 atagtgccggcggtggaagggacgctgaacgtgctgcgcgccgccaaggaggccgggagc 180
Query: 342 gtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccgggtggccc 401
|||||||||||||| || |||||||||| || ||| || |||||| |||||||||||||
Sbjct: 181 gtgcggcgggtggtggtcacctcgtccagctgcgccatcatgcccagccccgggtggccc 240
Query: 402 gccggcgaggtcgtcgacgagcgttgctggaccgacatcgactactgcgagaagaacggg 461
|||||||||||| |||||||| |||||||| |||||||||||| ||||||||||||||
Sbjct: 241 gccggcgaggtccgggacgagcgctgctggactgacatcgactacagcgagaagaacggg 300
Query: 462 gtttggtaccctgcttccaagacgctggcggagaaggcggcgtgga 507
||||||||||||| ||||||||||||||| |||||||| |||||||
Sbjct: 301 gtttggtaccctgtttccaagacgctggcagagaaggcagcgtgga 346
>gb|CF756413.1|CF756413 DSAF1_5_H08.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_5_H08_A011 5', mRNA sequence
Length = 368
Score = 355 bits (179), Expect = 3e-096
Identities = 304/346 (87%)
Strand = Plus / Plus
Query: 162 ttccgctgcgacctcctggacggcgccgcgctgctcgacgcggcgcgcgggtgctcgggc 221
|||||| |||||||||| ||||||||||||||| ||||||| ||||| || ||||||||
Sbjct: 1 ttccgcggcgacctcctcgacggcgccgcgctgatcgacgccgcgcggggctgctcgggt 60
Query: 222 gtcttccacctcgcgtcaccctgcaccgtcgaccccgtcaaggacccccagaatcagctg 281
|||||||||||||| || ||||||| ||||||| |||||| ||||||||||| || |||
Sbjct: 61 gtcttccacctcgcctcgccctgcatcgtcgacgccgtcagcgacccccagaagcaactg 120
Query: 282 atggtgcctgcggtggaagggacgctgaacgtggtgcgcgcggncaaggacgccggcgga 341
|| ||||| |||||||||||||||||||||||| ||||||| | |||||| ||||| |
Sbjct: 121 atagtgccggcggtggaagggacgctgaacgtgctgcgcgccgccaaggaggccgggagc 180
Query: 342 gtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaaccccgggtggccc 401
|||||||||||||| || |||||||||| || ||| || |||||| |||||||||||||
Sbjct: 181 gtgcggcgggtggtggtcacctcgtccagctgcgccatcatgcccagccccgggtggccc 240
Query: 402 gccggcgaggtcgtcgacgagcgttgctggaccgacatcgactactgcgagaagaacggg 461
|||||||||||| |||||||| |||||||| |||||| ||||| ||||||||||||||
Sbjct: 241 gccggcgaggtccgggacgagcgctgctggactgacatctactacagcgagaagaacggg 300
Query: 462 gtttggtaccctgcttccaagacgctggcggagaaggcggcgtgga 507
||||||||||||| ||||||||||||||| |||||||| |||||||
Sbjct: 301 gtttggtaccctgtttccaagacgctggcagagaaggcagcgtgga 346
>gb|BE592843.1|BE592843 WS1_91_B04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 469
Score = 329 bits (166), Expect = 1e-088
Identities = 320/372 (86%), Gaps = 6/372 (1%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||| |||||||||||| |||||||||||| |
Sbjct: 77 tggtcaccggcgccagcggcttcatcggctccaccctcgtccgcctcctcctcggccgtg 136
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccgacgacagggcggagacggaccacctcc 120
|||||||||||| ||||||||| ||| ||||||| |||| |||||||||||| ||||| |
Sbjct: 137 gctacaacgtccacgccggcgttctcaaccccgatgacaaggcggagacggagcacctgc 196
Query: 121 tcgcgctggggggcggcgccggcgccggc------cgcctcagcttcttccgctgcgacc 174
|||| |||| | ||||||||||| ||| |||||| || |||||||| ||||||
Sbjct: 197 tcgccctggccgccggcgccggcgagggcgagggccgcctccgcatcttccgcggcgacc 256
Query: 175 tcctggacggcgccgcgctgctcgacgcggcgcgcgggtgctcgggcgtcttccacctcg 234
|||| ||||||||||||||| ||||||| ||||| || |||||||| |||||||||||||
Sbjct: 257 tcctcgacggcgccgcgctgatcgacgccgcgcggggctgctcgggtgtcttccacctcg 316
Query: 235 cgtcaccctgcaccgtcgaccccgtcaaggacccccagaatcagctgatggtgcctgcgg 294
| || ||||||| ||||||| |||||| ||||||||||| || ||||| ||||| ||||
Sbjct: 317 cctcgccctgcatcgtcgacgccgtcagcgacccccagaagcaactgatagtgccggcgg 376
Query: 295 tggaagggacgctgaacgtggtgcgcgcggncaaggacgccggcggagtgcggcgggtgg 354
|||||||||||||||||||| ||||||| | |||||| ||||| | |||||||||||||
Sbjct: 377 tggaagggacgctgaacgtgctgcgcgccgccaaggaggccgggagcgtgcggcgggtgg 436
Query: 355 tcgtgacctcgt 366
| || |||||||
Sbjct: 437 tggtcacctcgt 448
>gb|CW489883.1|CW489883 fsbb001f275a24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f275a24, DNA
sequence
Length = 278
Score = 291 bits (147), Expect = 3e-077
Identities = 182/194 (93%)
Strand = Plus / Minus
Query: 270 cagaatcagctgatggtgcctgcggtggaagggacgctgaacgtggtgcgcgcggncaag 329
|||||||| ||||||||||| |||||||||||||||| |||||||||||||||| ||||
Sbjct: 265 cagaatcacctgatggtgcccgcggtggaagggacgcgtaacgtggtgcgcgcggccaag 206
Query: 330 gacgccggcggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaac 389
||||| |||||||||||||||||||| ||||||||||||||||||||| | ||||||| |
Sbjct: 205 gacgctggcggagtgcggcgggtggtggtgacctcgtccatctcggccatggtgcccagc 146
Query: 390 cccgggtggcccgccggcgaggtcgtcgacgagcgttgctggaccgacatcgactactgc 449
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 145 cccgggtggcccgccggggaggtcctcgacgagcgttgctggaccgacatcgactactgc 86
Query: 450 gagaagaacggggt 463
||||||||||||||
Sbjct: 85 gagaagaacggggt 72
>gb|CW044414.1|CW044414 104_280_10508936_115_30243 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10508936, DNA
sequence
Length = 547
Score = 289 bits (146), Expect = 1e-076
Identities = 172/181 (95%)
Strand = Plus / Plus
Query: 270 cagaatcagctgatggtgcctgcggtggaagggacgctgaacgtggtgcgcgcggncaag 329
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct: 367 cagaatcagctgatggtgcccgcggtggaagggacgcggaacgtggtgcgcgcggccaag 426
Query: 330 gacgccggcggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaac 389
|||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| |
Sbjct: 427 gacgccggcggagtgcggcgggtggtggtgacctcgtccatctcggccatggtgcccagc 486
Query: 390 cccgggtggcccgccggcgaggtcgtcgacgagcgttgctggaccgacatcgactactgc 449
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 487 cccgggtggcccgccggggaggtcctcgacgagcgttgctggaccgacatcgactactgc 546
Query: 450 g 450
|
Sbjct: 547 g 547
Score = 264 bits (133), Expect = 7e-069
Identities = 166/177 (93%)
Strand = Plus / Plus
Query: 96 gacagggcggagacggaccacctcctcgcgctggggggcggcgccggcgccggccgcctc 155
|||||||||||||||||||||||||||| || | | ||||||||||| ||||||||||
Sbjct: 75 gacagggcggagacggaccacctcctcgatctcgccgccggcgccggcgacggccgcctc 134
Query: 156 agcttcttccgctgcgacctcctggacggcgccgcgctgctcgacgcggcgcgcgggtgc 215
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 135 agcttcttccgctgcgacctcctggacggcgccgcgctgctcgacgccgcgcgcgggtgc 194
Query: 216 tcgggcgtcttccacctcgcgtcaccctgcaccgtcgaccccgtcaaggacccccag 272
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 195 tcgggtatcttccacctcgcgtcgccctgcaccgtcgaccccgtcaaggacccccag 251
>gb|CW487378.1|CW487378 fsbb001f253d08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f253d08, DNA
sequence
Length = 694
Score = 220 bits (111), Expect = 1e-055
Identities = 144/155 (92%)
Strand = Plus / Plus
Query: 96 gacagggcggagacggaccacctcctcgcgctggggggcggcgccggcgccggccgcctc 155
|||||||||||||||||||||||||||| || | | ||||||||||| ||||||||||
Sbjct: 540 gacagggcggagacggaccacctcctcgatctcgccgccggcgccggcgacggccgcctc 599
Query: 156 agcttcttccgctgcgacctcctggacggcgccgcgctgctcgacgcggcgcgcgggtgc 215
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 600 agcttcttccgctgcgacctcctggacggcgccgcgctgctcgacgccgcgcgcgggtgc 659
Query: 216 tcgggcgtcttccacctcgcgtcaccctgcaccgt 250
||||| |||||||||||||||| |||||||||||
Sbjct: 660 tcgggtatcttccacctcgcgtcgccctgcaccgt 694
Score = 153 bits (77), Expect = 2e-035
Identities = 89/93 (95%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 311 tggtcaccggcgccagcggcttcatcggctcgaccctcgtccgaggcctccttggccgcg 370
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccg 93
|||||||||||||||||||||||||| ||||||
Sbjct: 371 gctacaacgtccgcgccggcgtcctcaaccccg 403
>gb|CW456088.1|CW456088 fsbb001f201e14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f201e14, DNA
sequence
Length = 652
Score = 188 bits (95), Expect = 3e-046
Identities = 169/194 (87%)
Strand = Plus / Minus
Query: 270 cagaatcagctgatggtgcctgcggtggaagggacgctgaacgtggtgcgcgcggncaag 329
||||| || ||||| ||||| |||||||||||||||||||||||| ||||||| | ||||
Sbjct: 347 cagaagcaactgatagtgccggcggtggaagggacgctgaacgtgctgcgcgccgccaag 288
Query: 330 gacgccggcggagtgcggcgggtggtcgtgacctcgtccatctcggccgtcgtgcccaac 389
|| ||||| | |||||||||||||| || |||||||||| || ||| || |||||| |
Sbjct: 287 gaggccgggagcgtgcggcgggtggtggtcacctcgtccagctgcgccatcatgcccagc 228
Query: 390 cccgggtggcccgccggcgaggtcgtcgacgagcgttgctggaccgacatcgactactgc 449
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||| ||
Sbjct: 227 cccgggtggcccgccggcgaggtccgggacgagcgctgctggactgacatcgactacagc 168
Query: 450 gagaagaacggggt 463
||||||||||||||
Sbjct: 167 gagaagaacggggt 154
Score = 131 bits (66), Expect = 7e-029
Identities = 111/126 (88%)
Strand = Plus / Minus
Query: 147 ggccgcctcagcttcttccgctgcgacctcctggacggcgccgcgctgctcgacgcggcg 206
||||||||| || |||||||| |||||||||| ||||||||||||||| ||||||| |||
Sbjct: 570 ggccgcctccgcatcttccgcggcgacctcctcgacggcgccgcgctgatcgacgccgcg 511
Query: 207 cgcgggtgctcgggcgtcttccacctcgcgtcaccctgcaccgtcgaccccgtcaaggac 266
|| || |||||||| |||||||||||||| || ||||||| ||||||| |||||| |||
Sbjct: 510 cggggctgctcgggtgtcttccacctcgcctcgccctgcatcgtcgacgccgtcagcgac 451
Query: 267 ccccag 272
||||||
Sbjct: 450 ccccag 445
>gb|CW454707.1|CW454707 fsbb001f199e17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f199e17, DNA
sequence
Length = 586
Score = 131 bits (66), Expect = 7e-029
Identities = 111/126 (88%)
Strand = Plus / Minus
Query: 147 ggccgcctcagcttcttccgctgcgacctcctggacggcgccgcgctgctcgacgcggcg 206
||||||||| || |||||||| |||||||||| ||||||||||||||| ||||||| |||
Sbjct: 236 ggccgcctccgcatcttccgcggcgacctcctcgacggcgccgcgctgatcgacgccgcg 177
Query: 207 cgcgggtgctcgggcgtcttccacctcgcgtcaccctgcaccgtcgaccccgtcaaggac 266
|| || |||||||| |||||||||||||| || ||||||| ||||||| |||||| |||
Sbjct: 176 cggggctgctcgggtgtcttccacctcgcctcgccctgcatcgtcgacgccgtcagcgac 117
Query: 267 ccccag 272
||||||
Sbjct: 116 ccccag 111
Score = 121 bits (61), Expect = 7e-026
Identities = 85/93 (91%)
Strand = Plus / Minus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||| |||||||||||| |||||||||||| |
Sbjct: 469 tggtcaccggcgccagcggcttcatcggctccaccctcgtccgcctcctcctcggccgtg 410
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccg 93
|||||||||||| ||||||||| ||| ||||||
Sbjct: 409 gctacaacgtccacgccggcgttctcaaccccg 377
>gb|CW456089.1|CW456089 fsbb001f201e14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f201e14, DNA
sequence
Length = 494
Score = 121 bits (61), Expect = 7e-026
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcg 60
|||||||||| |||||||||||||||||||| |||||||||||| |||||||||||| |
Sbjct: 211 tggtcaccggcgccagcggcttcatcggctccaccctcgtccgcctcctcctcggccgtg 270
Query: 61 gctacaacgtccgcgccggcgtcctcgaccccg 93
|||||||||||| ||||||||| ||| ||||||
Sbjct: 271 gctacaacgtccacgccggcgttctcaaccccg 303
Score = 63.9 bits (32), Expect = 1e-008
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 147 ggccgcctcagcttcttccgctgcgacctcctggacggcgccgcgctg 194
||||||||| || |||||||| |||||||||| |||||||||||||||
Sbjct: 444 ggccgcctccgcatcttccgcggcgacctcctcgacggcgccgcgctg 491
>gb|CW454708.1|CW454708 fsbb001f199e17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f199e17, DNA
sequence
Length = 587
Score = 75.8 bits (38), Expect = 3e-012
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 1 tggtcaccggggccagcggcttcatcggctcgaccctcgtccgcggcctcctcg 54
|||||||||| |||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 534 tggtcaccggcgccagcggcttcatcggctccaccctcgtccgcctcctcctcg 587
>gb|CF756307.1|CF756307 DSAF1_4_G03.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_4_G03_A011 3', mRNA sequence
Length = 664
Score = 71.9 bits (36), Expect = 5e-011
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 460 gggtttggtaccctgcttccaagacgctggcggagaaggcggcgtgga 507
||||||||||||||| ||||||||||||||| |||||||| |||||||
Sbjct: 1 gggtttggtaccctgtttccaagacgctggcagagaaggcagcgtgga 48
>gb|CW175958.1|CW175958 104_588_11158231_148_36575_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158231, DNA
sequence
Length = 510
Score = 69.9 bits (35), Expect = 2e-010
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 461 ggtttggtaccctgcttccaagacgctggcggagaaggcggcgtgga 507
|||||||||||||| ||||||||||||||| |||||||| |||||||
Sbjct: 421 ggtttggtaccctgtttccaagacgctggcagagaaggcagcgtgga 467
>gb|CW162184.1|CW162184 104_569_11150811_148_36439_010 Sorghum methylation filtered
library (LibID: 104) Sorghum bicolor genomic clone
11150811, DNA sequence
Length = 789
Score = 52.0 bits (26), Expect = 5e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 12 gccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtc 71
|||||||||||||| ||||| ||||||||| ||||||| | ||||||||||| ||||
Sbjct: 76 gccagcggcttcattggctcctggctcgtccgctgcctccttgaccgcggctacaccgtc 17
Query: 72 cgcgcc 77
| ||||
Sbjct: 16 cacgcc 11
>gb|CW216905.1|CW216905 104_649_11195370_116_37128_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195370, DNA
sequence
Length = 644
Score = 52.0 bits (26), Expect = 5e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 12 gccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtc 71
|||||||||||||| ||||| ||||||||| ||||||| | ||||||||||| ||||
Sbjct: 390 gccagcggcttcattggctcctggctcgtccgctgcctccttgaccgcggctacaccgtc 331
Query: 72 cgcgcc 77
| ||||
Sbjct: 330 cacgcc 325
>gb|CW273767.1|CW273767 104_746_11404076_148_35369_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11404076, DNA
sequence
Length = 575
Score = 52.0 bits (26), Expect = 5e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 12 gccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtc 71
|||||||||||||| ||||| ||||||||| ||||||| | ||||||||||| ||||
Sbjct: 105 gccagcggcttcattggctcctggctcgtccgctgcctccttgaccgcggctacaccgtc 46
Query: 72 cgcgcc 77
| ||||
Sbjct: 45 cacgcc 40
>gb|CW295946.1|CW295946 104_777_11461224_148_35625_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11461224, DNA
sequence
Length = 602
Score = 52.0 bits (26), Expect = 5e-005
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 12 gccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtc 71
|||||||||||||| ||||| ||||||||| ||||||| | ||||||||||| ||||
Sbjct: 264 gccagcggcttcattggctcctggctcgtccgctgcctccttgaccgcggctacaccgtc 205
Query: 72 cgcgcc 77
| ||||
Sbjct: 204 cacgcc 199
>gb|CB925802.1|CB925802 ABA1_23_F05.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_23_F05_A012 5', mRNA sequence
Length = 645
Score = 52.0 bits (26), Expect = 5e-005
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 12 gccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtc 71
|||||||||||||| ||||| ||||||||| ||||||| | ||||||||||| ||||
Sbjct: 120 gccagcggcttcattggctcctggctcgtccgctgcctccttgaccgcggctacaccgtc 179
Query: 72 cgcgcc 77
| ||||
Sbjct: 180 cacgcc 185
>gb|CF428334.1|CF428334 PH1_14_C04.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_14_C04_A002 5', mRNA sequence
Length = 659
Score = 52.0 bits (26), Expect = 5e-005
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 12 gccagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtc 71
|||||||||||||| ||||| ||||||||| ||||||| | ||||||||||| ||||
Sbjct: 139 gccagcggcttcattggctcctggctcgtccgctgcctccttgaccgcggctacaccgtc 198
Query: 72 cgcgcc 77
| ||||
Sbjct: 199 cacgcc 204
>gb|CW353195.1|CW353195 fsbb001f015n13k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f015n13, DNA
sequence
Length = 710
Score = 48.1 bits (24), Expect = 8e-004
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 14 cagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtccg 73
|||||||||||||||||| ||||||||| ||| ||||| |||||||||| |||||
Sbjct: 455 cagcggcttcatcggctcctggctcgtccgcctccttctcggtcgcggctacaccgtcca 514
Query: 74 cgcc 77
||||
Sbjct: 515 cgcc 518
>gb|CB925645.1|CB925645 ABA1_22_G02.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_22_G02_A012 5', mRNA sequence
Length = 582
Score = 48.1 bits (24), Expect = 8e-004
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 14 cagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtccg 73
|||||||||||||||||| ||||||||| ||| ||||| |||||||||| |||||
Sbjct: 113 cagcggcttcatcggctcctggctcgtccgcctccttctcggtcgcggctacaccgtcca 172
Query: 74 cgcc 77
||||
Sbjct: 173 cgcc 176
>gb|CB926819.1|CB926819 ABA1_10_G05.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_10_G05_A012 5', mRNA sequence
Length = 549
Score = 48.1 bits (24), Expect = 8e-004
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 14 cagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtccg 73
|||||||||||||||||| ||||||||| ||| ||||| |||||||||| |||||
Sbjct: 171 cagcggcttcatcggctcctggctcgtccgcctccttctcggtcgcggctacaccgtcca 230
Query: 74 cgcc 77
||||
Sbjct: 231 cgcc 234
>gb|CD228254.1|CD228254 CCC1_6_B12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_B12_A007 5', mRNA sequence
Length = 612
Score = 48.1 bits (24), Expect = 8e-004
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 14 cagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtccg 73
|||||||||||||||||| ||||||||| ||| ||||| |||||||||| |||||
Sbjct: 298 cagcggcttcatcggctcctggctcgtccgcctccttctcggtcgcggctacaccgtcca 357
Query: 74 cgcc 77
||||
Sbjct: 358 cgcc 361
>gb|CN145669.1|CN145669 WOUND1_34_B03.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_34_B03_A002 5', mRNA sequence
Length = 737
Score = 48.1 bits (24), Expect = 8e-004
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 14 cagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtccg 73
|||||||||||||||||| ||||||||| ||| ||||| |||||||||| |||||
Sbjct: 106 cagcggcttcatcggctcctggctcgtccgcctccttctcggtcgcggctacaccgtcca 165
Query: 74 cgcc 77
||||
Sbjct: 166 cgcc 169
>gb|CN147237.1|CN147237 WOUND1_48_B05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_48_B05_A002 5', mRNA sequence
Length = 737
Score = 48.1 bits (24), Expect = 8e-004
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 14 cagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtccg 73
|||||||||||||||||| ||||||||| ||| ||||| |||||||||| |||||
Sbjct: 138 cagcggcttcatcggctcctggctcgtccgcctccttctcggtcgcggctacaccgtcca 197
Query: 74 cgcc 77
||||
Sbjct: 198 cgcc 201
>gb|CX619593.1|CX619593 GABR1_46_B10.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_46_B10_A002 5', mRNA sequence
Length = 277
Score = 48.1 bits (24), Expect = 8e-004
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 14 cagcggcttcatcggctcgaccctcgtccgcggcctcctcggccgcggctacaacgtccg 73
|||||||||||||||||| ||||||||| ||| ||||| |||||||||| |||||
Sbjct: 138 cagcggcttcatcggctcctggctcgtccgcctccttctcggtcgcggctacaccgtcca 197
Query: 74 cgcc 77
||||
Sbjct: 198 cgcc 201
>gb|BH245547.1|BH245547 pSB0878 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB0878 similar to
putative cinnamoyl-CoA reductase (AAC78522), DNA
sequence
Length = 893
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 461 ggtttggtaccctgcttccaagacgctggcggagaaggcggcgtgga 507
|||||||||||||||||| || | ||||| |||||||| |||||||
Sbjct: 819 ggtttggtaccctgcttcgaaagcactggcagagaaggcagcgtgga 773
>gb|CL153319.1|CL153319 104_337_10780629_116_31368_261 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780629, DNA
sequence
Length = 690
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 461 ggtttggtaccctgcttccaagacgctggcggagaaggcggcgtgga 507
|||||||||||||||||| || | ||||| |||||||| |||||||
Sbjct: 156 ggtttggtaccctgcttcgaaagcactggcagagaaggcagcgtgga 202
>gb|CW307337.1|CW307337 104_795_11468086_148_36060_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468086, DNA
sequence
Length = 633
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 477 tccaagacgctggcggagaaggcggcg 503
|||||||| ||||||||||||||||||
Sbjct: 29 tccaagaccctggcggagaaggcggcg 3
>gb|CW487377.1|CW487377 fsbb001f253d08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f253d08, DNA
sequence
Length = 706
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 461 ggtttggtaccctgcttccaagacgctggcggagaaggcggcgtgga 507
|||||||||||||||||| || | ||||| |||||||| |||||||
Sbjct: 461 ggtttggtaccctgcttcgaaagcactggcagagaaggcagcgtgga 415
>gb|BZ336368.1|BZ336368 hz33f08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz33f08 5', DNA sequence
Length = 627
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 48 ctcctcggccgcggctacaacgtccgcgcc 77
||||||| ||||||||||| ||||||||||
Sbjct: 425 ctcctcgaccgcggctacaccgtccgcgcc 396
>gb|CW021210.1|CW021210 104_109_10409416_114_30492 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409416, DNA
sequence
Length = 716
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 ctcctcggccgcggctacaacgtccgcgcc 77
||||||| ||||||||||| ||||||||||
Sbjct: 266 ctcctcgaccgcggctacaccgtccgcgcc 295
>gb|CW217706.1|CW217706 104_651_11195794_116_37071_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195794, DNA
sequence
Length = 664
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 ctcctcggccgcggctacaacgtccgcgcc 77
||||||| ||||||||||| ||||||||||
Sbjct: 198 ctcctcgaccgcggctacaccgtccgcgcc 227
>gb|CW359843.1|CW359843 fsbb001f027k11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f027k11, DNA
sequence
Length = 521
Score = 44.1 bits (22), Expect = 0.012
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 139 ccggcgccggccgcctcagcttcttc 164
||||||||||||||| ||||||||||
Sbjct: 101 ccggcgccggccgccacagcttcttc 76
>gb|BM323476.1|BM323476 PIC1_19_G04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 503
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 ctcctcggccgcggctacaacgtccgcgcc 77
||||||| ||||||||||| ||||||||||
Sbjct: 183 ctcctcgaccgcggctacaccgtccgcgcc 212
>gb|CD225805.1|CD225805 CCC1_41_H04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_41_H04_A007 5', mRNA sequence
Length = 659
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 ctcctcggccgcggctacaacgtccgcgcc 77
||||||| ||||||||||| ||||||||||
Sbjct: 204 ctcctcgaccgcggctacaccgtccgcgcc 233
>gb|CF480908.1|CF480908 POL1_68_F11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_68_F11_A002 5', mRNA sequence
Length = 773
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 ctcctcggccgcggctacaacgtccgcgcc 77
||||||| ||||||||||| ||||||||||
Sbjct: 212 ctcctcgaccgcggctacaccgtccgcgcc 241
>gb|CN152656.1|CN152656 WOUND1_83_A06.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_83_A06_A002 5', mRNA sequence
Length = 857
Score = 44.1 bits (22), Expect = 0.012
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 ctcctcggccgcggctacaacgtccgcgcc 77
||||||| ||||||||||| ||||||||||
Sbjct: 193 ctcctcgaccgcggctacaccgtccgcgcc 222
>gb|AW679918.1|AW679918 WS1_33_F11.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 429
Score = 42.1 bits (21), Expect = 0.048
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 132 ggcggcgccggcgccggccgc 152
|||||||||||||||||||||
Sbjct: 236 ggcggcgccggcgccggccgc 216
>gb|BM318470.1|BM318470 PI1_13_H12.b9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 573
Score = 42.1 bits (21), Expect = 0.048
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 135 ggcgccggcgccggccgcctc 155
|||||||||||||||||||||
Sbjct: 62 ggcgccggcgccggccgcctc 82
>gb|BH840756.1|BH840756 pSB-0063 pSB Sorghum bicolor genomic 5', DNA sequence
Length = 896
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 134 cggcgccggcgccggccgcc 153
||||||||||||||||||||
Sbjct: 345 cggcgccggcgccggccgcc 326
>gb|CL152773.1|CL152773 104_336_10780217_116_31366_233 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10780217, DNA
sequence
Length = 196
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 133 gcggcgccggcgccggccgc 152
||||||||||||||||||||
Sbjct: 52 gcggcgccggcgccggccgc 33
>gb|CL158104.1|CL158104 104_346_10803308_116_31376_284 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10803308, DNA
sequence
Length = 567
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 134 cggcgccggcgccggccgcc 153
||||||||||||||||||||
Sbjct: 30 cggcgccggcgccggccgcc 11
>gb|CL189132.1|CL189132 104_406_10902080_114_32470_030 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10902080, DNA
sequence
Length = 604
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 132 ggcggcgccggcgccggccg 151
||||||||||||||||||||
Sbjct: 283 ggcggcgccggcgccggccg 264
>gb|CW036702.1|CW036702 104_268_10503920_115_30382 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503920, DNA
sequence
Length = 712
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 402 gccggcgaggtcgtcgacga 421
||||||||||||||||||||
Sbjct: 218 gccggcgaggtcgtcgacga 237
>gb|CW046958.1|CW046958 104_284_10512456_114_30219 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512456, DNA
sequence
Length = 518
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 133 gcggcgccggcgccggccgc 152
||||||||||||||||||||
Sbjct: 225 gcggcgccggcgccggccgc 206
>gb|CW058277.1|CW058277 104_300_10518645_5_30082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518645, DNA
sequence
Length = 553
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 133 gcggcgccggcgccggccgc 152
||||||||||||||||||||
Sbjct: 110 gcggcgccggcgccggccgc 91
>gb|CW066114.1|CW066114 104_313_10523514_115_30149 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523514, DNA
sequence
Length = 472
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 132 ggcggcgccggcgccggccg 151
||||||||||||||||||||
Sbjct: 393 ggcggcgccggcgccggccg 374
>gb|CW070376.1|CW070376 104_321_10526715_1_30090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10526715, DNA
sequence
Length = 429
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 132 ggcggcgccggcgccggccg 151
||||||||||||||||||||
Sbjct: 308 ggcggcgccggcgccggccg 289
>gb|CW090536.1|CW090536 104_436_10949335_114_32604_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10949335, DNA
sequence
Length = 653
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 136 gcgccggcgccggccgcctc 155
||||||||||||||||||||
Sbjct: 406 gcgccggcgccggccgcctc 387
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 240,879
Number of Sequences: 832831
Number of extensions: 240879
Number of successful extensions: 81914
Number of sequences better than 0.5: 83
Number of HSP's better than 0.5 without gapping: 76
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 81683
Number of HSP's gapped (non-prelim): 226
length of query: 507
length of database: 491,359,669
effective HSP length: 19
effective length of query: 488
effective length of database: 475,535,880
effective search space: 232061509440
effective search space used: 232061509440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)