BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969865.2.1
(675 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG048961.1|BG048961 OV1_21_D05.g1_A002 Ovary 1 (OV1) Sor... 541 e-152
gb|CD228087.1|CD228087 CCC1_5_F05.g1_A007 Callus culture/ce... 541 e-152
gb|CD229764.1|CD229764 CCC1_19_H12.g1_A007 Callus culture/c... 541 e-152
gb|CN148481.1|CN148481 WOUND1_56_H01.g1_A002 Wounded leaves... 541 e-152
gb|CN148416.1|CN148416 WOUND1_56_H01.b1_A002 Wounded leaves... 533 e-150
gb|BG048656.1|BG048656 OV1_21_D05.b1_A002 Ovary 1 (OV1) Sor... 531 e-149
gb|CD227978.1|CD227978 CCC1_5_F05.b1_A007 Callus culture/ce... 515 e-144
gb|CW102865.1|CW102865 104_471_11011572_116_34429_044 Sorgh... 202 3e-050
gb|CW161652.1|CW161652 104_568_11150526_148_36435_021 Sorgh... 153 2e-035
gb|CW266016.1|CW266016 104_735_11232200_148_35266_022 Sorgh... 153 2e-035
gb|BE596069.1|BE596069 PI1_51_C11.g1_A002 Pathogen induced ... 153 2e-035
gb|BE596241.1|BE596241 PI1_51_C11.b1_A002 Pathogen induced ... 153 2e-035
gb|BF421288.1|BF421288 FM1_7_H02.g1_A003 Floral-Induced Mer... 149 4e-034
gb|CW427234.1|CW427234 fsbb001f139b24k0 Sorghum methylation... 121 9e-026
gb|BF421370.1|BF421370 FM1_7_H02.b1_A003 Floral-Induced Mer... 117 1e-024
gb|CW355943.1|CW355943 fsbb001f020m20f0 Sorghum methylation... 111 8e-023
gb|CW083471.1|CW083471 104_425_10944264_114_32351_084 Sorgh... 80 3e-013
gb|CW083472.1|CW083472 104_425_10944264_114_32387_084 Sorgh... 80 3e-013
gb|CW355944.1|CW355944 fsbb001f020m20k0 Sorghum methylation... 78 1e-012
gb|CW022584.1|CW022584 104_162_10431932_5_30000 Sorghum met... 74 2e-011
gb|CW246898.1|CW246898 104_707_11221527_148_37606_052 Sorgh... 74 2e-011
gb|CW246897.1|CW246897 104_707_11221527_148_35088_052 Sorgh... 68 1e-009
gb|BZ424332.1|BZ424332 id59f09.g1 WGS-SbicolorF (DH5a methy... 50 3e-004
gb|CW366442.1|CW366442 fsbb001f039h07f0 Sorghum methylation... 50 3e-004
gb|CL188794.1|CL188794 104_405_10901841_114_32452_039 Sorgh... 40 0.26
gb|CL188795.1|CL188795 104_405_10901841_116_32456_039 Sorgh... 40 0.26
>gb|BG048961.1|BG048961 OV1_21_D05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 461
Score = 541 bits (273), Expect = e-152
Identities = 349/373 (93%), Gaps = 1/373 (0%)
Strand = Plus / Plus
Query: 59 ccacccagattgacggctccaattggcgcccatggcggaagaaaccaacataaaaaagga 118
||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 23 ccacccagatttacggctccaattggcgcccatggcggaagaaaccaatgtaaagaagga 82
Query: 119 ggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataatac 178
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 83 ggaagaggagttcagcaccggtcctctctcagtgctcatgatgagcgtcaagaacaatac 142
Query: 179 ccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcga 238
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct: 143 tcaggttcttatcaactgccggaacaacaagaagctgcttggtcgcgtgagagcctttga 202
Query: 239 tcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagac 298
|||||| |||||||||||||| ||||| ||||||||||||||||| |||||||| |||||
Sbjct: 203 tcggcattgcaacatggttctcgagaatgttagggagatgtggactgaggtaccaaagac 262
Query: 299 cggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgtt 358
|||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct: 263 cggtaaaggcaagaagaaggctcttccggtgaacaaagataggttcataagcaagatgtt 322
Query: 359 cctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag-tagcctgtacac 417
||||||||||||||||||||||||||| |||||||||||||| |||| || | |||||||
Sbjct: 323 cctccgtggggattcggtcatcattgttctcaggaacccgaactgagttatcttgtacac 382
Query: 418 gtagagagtctat 430
|| ||||||||||
Sbjct: 383 gtggagagtctat 395
>gb|CD228087.1|CD228087 CCC1_5_F05.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_5_F05_A007 5', mRNA sequence
Length = 664
Score = 541 bits (273), Expect = e-152
Identities = 349/373 (93%), Gaps = 1/373 (0%)
Strand = Plus / Plus
Query: 59 ccacccagattgacggctccaattggcgcccatggcggaagaaaccaacataaaaaagga 118
||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 79 ccacccagatttacggctccaattggcgcccatggcggaagaaaccaatgtaaagaagga 138
Query: 119 ggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataatac 178
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 139 ggaagaggagttcagcaccggtcctctctcagtgctcatgatgagcgtcaagaacaatac 198
Query: 179 ccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcga 238
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct: 199 tcaggttcttatcaactgccggaacaacaagaagctgcttggtcgcgtgagagcctttga 258
Query: 239 tcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagac 298
|||||| |||||||||||||| ||||| ||||||||||||||||| |||||||| |||||
Sbjct: 259 tcggcattgcaacatggttctcgagaatgttagggagatgtggactgaggtaccaaagac 318
Query: 299 cggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgtt 358
|||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct: 319 cggtaaaggcaagaagaaggctcttccggtgaacaaagataggttcataagcaagatgtt 378
Query: 359 cctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag-tagcctgtacac 417
||||||||||||||||||||||||||| |||||||||||||| |||| || | |||||||
Sbjct: 379 cctccgtggggattcggtcatcattgttctcaggaacccgaactgagttatcttgtacac 438
Query: 418 gtagagagtctat 430
|| ||||||||||
Sbjct: 439 gtggagagtctat 451
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 cgacgcgccgccgccgtctcgccg 55
||||||||||||||||||||||||
Sbjct: 38 cgacgcgccgccgccgtctcgccg 61
>gb|CD229764.1|CD229764 CCC1_19_H12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_19_H12_A007 5', mRNA sequence
Length = 569
Score = 541 bits (273), Expect = e-152
Identities = 349/373 (93%), Gaps = 1/373 (0%)
Strand = Plus / Plus
Query: 59 ccacccagattgacggctccaattggcgcccatggcggaagaaaccaacataaaaaagga 118
||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 70 ccacccagatttacggctccaattggcgcccatggcggaagaaaccaatgtaaagaagga 129
Query: 119 ggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataatac 178
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 130 ggaagaggagttcagcaccggtcctctctcagtgctcatgatgagcgtcaagaacaatac 189
Query: 179 ccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcga 238
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct: 190 tcaggttcttatcaactgccggaacaacaagaagctgcttggtcgcgtgagagcctttga 249
Query: 239 tcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagac 298
|||||| |||||||||||||| ||||| ||||||||||||||||| |||||||| |||||
Sbjct: 250 tcggcattgcaacatggttctcgagaatgttagggagatgtggactgaggtaccaaagac 309
Query: 299 cggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgtt 358
|||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct: 310 cggtaaaggcaagaagaaggctcttccggtgaacaaagataggttcataagcaagatgtt 369
Query: 359 cctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag-tagcctgtacac 417
||||||||||||||||||||||||||| |||||||||||||| |||| || | |||||||
Sbjct: 370 cctccgtggggattcggtcatcattgttctcaggaacccgaactgagttatcttgtacac 429
Query: 418 gtagagagtctat 430
|| ||||||||||
Sbjct: 430 gtggagagtctat 442
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 cgacgcgccgccgccgtctcgccg 55
||||||||||||||||||||||||
Sbjct: 29 cgacgcgccgccgccgtctcgccg 52
>gb|CN148481.1|CN148481 WOUND1_56_H01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_56_H01_A002 5', mRNA sequence
Length = 661
Score = 541 bits (273), Expect = e-152
Identities = 349/373 (93%), Gaps = 1/373 (0%)
Strand = Plus / Plus
Query: 59 ccacccagattgacggctccaattggcgcccatggcggaagaaaccaacataaaaaagga 118
||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 54 ccacccagatttacggctccaattggcgcccatggcggaagaaaccaatgtaaagaagga 113
Query: 119 ggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataatac 178
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 114 ggaagaggagttcagcaccggtcctctctcagtgctcatgatgagcgtcaagaacaatac 173
Query: 179 ccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcga 238
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct: 174 tcaggttcttatcaactgccggaacaacaagaagctgcttggtcgcgtgagagcctttga 233
Query: 239 tcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagac 298
|||||| |||||||||||||| ||||| ||||||||||||||||| |||||||| |||||
Sbjct: 234 tcggcattgcaacatggttctcgagaatgttagggagatgtggactgaggtaccaaagac 293
Query: 299 cggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgtt 358
|||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct: 294 cggtaaaggcaagaagaaggctcttccggtgaacaaagataggttcataagcaagatgtt 353
Query: 359 cctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag-tagcctgtacac 417
||||||||||||||||||||||||||| |||||||||||||| |||| || | |||||||
Sbjct: 354 cctccgtggggattcggtcatcattgttctcaggaacccgaactgagttatcttgtacac 413
Query: 418 gtagagagtctat 430
|| ||||||||||
Sbjct: 414 gtggagagtctat 426
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 cgacgcgccgccgccgtctcgccgc 56
|||||||||||||||||||||||||
Sbjct: 13 cgacgcgccgccgccgtctcgccgc 37
>gb|CN148416.1|CN148416 WOUND1_56_H01.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_56_H01_A002 3', mRNA sequence
Length = 600
Score = 533 bits (269), Expect = e-150
Identities = 348/373 (93%), Gaps = 1/373 (0%)
Strand = Plus / Plus
Query: 59 ccacccagattgacggctccaattggcgcccatggcggaagaaaccaacataaaaaagga 118
||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 10 ccacccagatttacggctccaattggcgcccatggcggaagaaaccaatgtaaagaagga 69
Query: 119 ggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataatac 178
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 70 ggaagaggagttcagcaccggtcctctctcagtgctcatgatgagcgtcaagaacaatac 129
Query: 179 ccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcga 238
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct: 130 tcaggttcttatcaactgccggaacaacaagaagctgcttggtcgcgtgagagcctttga 189
Query: 239 tcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagac 298
|||||| |||||||||||||| ||||| ||||||||||||||||| |||||||| |||||
Sbjct: 190 tcggcattgcaacatggttctcgagaatgttagggagatgtggactgaggtaccaaagac 249
Query: 299 cggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgtt 358
|||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct: 250 cggtaaaggcaagaagaaggctcttccggtgaacaaagataggttcataagcaagatgtt 309
Query: 359 cctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag-tagcctgtacac 417
||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||
Sbjct: 310 cctccgtggggattcggtcatcattgttctcaggaacccgaactgagttattttgtacac 369
Query: 418 gtagagagtctat 430
|| ||||||||||
Sbjct: 370 gtggagagtctat 382
>gb|BG048656.1|BG048656 OV1_21_D05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 404
Score = 531 bits (268), Expect = e-149
Identities = 328/348 (94%)
Strand = Plus / Plus
Query: 59 ccacccagattgacggctccaattggcgcccatggcggaagaaaccaacataaaaaagga 118
||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 43 ccacccagatttacggctccaattggcgcccatggcggaagaaaccaatgtaaagaagga 102
Query: 119 ggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataatac 178
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 103 ggaagaggagttcagcaccggtcctctctcagtgctcatgatgagcgtcaagaacaatac 162
Query: 179 ccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcga 238
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct: 163 tcaggttcttatcaactgccggaacaacaagaagctgcttggtcgcgtgagagcctttga 222
Query: 239 tcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagac 298
|||||| |||||||||||||| ||||| ||||||||||||||||| |||||||| |||||
Sbjct: 223 tcggcattgcaacatggttctcgagaatgttagggagatgtggactgaggtaccaaagac 282
Query: 299 cggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgtt 358
|||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct: 283 cggtaaaggcaagaagaaggctcttccggtgaacaaagataggttcataagcaagatgtt 342
Query: 359 cctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagt 406
||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 343 cctccgtggggattcggtcatcattgttctcaggaacccgaactgagt 390
>gb|CD227978.1|CD227978 CCC1_5_F05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_5_F05_A007 3', mRNA sequence
Length = 657
Score = 515 bits (260), Expect = e-144
Identities = 333/356 (93%), Gaps = 1/356 (0%)
Strand = Plus / Plus
Query: 76 tccaattggcgcccatggcggaagaaaccaacataaaaaaggaggaagaggagttcagca 135
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 1 tccaattggcgcccatggcggaagaaaccaatgtaaagaaggaggaagaggagttcagca 60
Query: 136 ccggtcctctctcggtgctcatgatgagcgtcaagaataatacccaggttcttatcaact 195
||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 61 ccggtcctctctcagtgctcatgatgagcgtcaagaacaatactcaggttcttatcaact 120
Query: 196 gccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatcggcactgcaacatgg 255
||||||||||||||||| |||||||||||||| ||||||| |||||||| ||||||||||
Sbjct: 121 gccggaacaacaagaagctgcttggtcgcgtgagagcctttgatcggcattgcaacatgg 180
Query: 256 ttcttgagaacgttagggagatgtggaccgaggtaccgaagaccggtaaaggcaagaaga 315
|||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 181 ttctcgagaatgttagggagatgtggactgaggtaccaaagaccggtaaaggcaagaaga 240
Query: 316 aggctctcccggtgaacaaggacaggttcataagcaagatgttcctccgtggggattcgg 375
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 241 aggctcttccggtgaacaaagataggttcataagcaagatgttcctccgtggggattcgg 300
Query: 376 tcatcattgtcctcaggaacccgaaatgag-tagcctgtacacgtagagagtctat 430
|||||||||| |||||||||||||| |||| || | ||||||||| ||||||||||
Sbjct: 301 tcatcattgttctcaggaacccgaactgagttatcttgtacacgtggagagtctat 356
>gb|CW102865.1|CW102865 104_471_11011572_116_34429_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11011572, DNA
sequence
Length = 705
Score = 202 bits (102), Expect = 3e-050
Identities = 136/146 (93%), Gaps = 1/146 (0%)
Strand = Plus / Plus
Query: 286 aggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttca 345
||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct: 482 aggtaccaaagaccggtaaaggcaagaagaaggctcttccggtgaacaaagataggttca 541
Query: 346 taagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 542 taagcaagatgttcctccgtggggattcggtcatcattgttctcaggaacccgaactgag 601
Query: 406 -tagcctgtacacgtagagagtctat 430
|| | ||||||||| ||||||||||
Sbjct: 602 ttatcttgtacacgtggagagtctat 627
Score = 163 bits (82), Expect = 3e-038
Identities = 103/110 (93%)
Strand = Plus / Plus
Query: 181 aggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgatc 240
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||
Sbjct: 286 aggttcttatcaactgccggaacaacaagaagctgcttggtcgcgtgagagcctttgatc 345
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggta 290
|||| |||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct: 346 ggcattgcaacatggttctcgagaatgttagggagatgtggactgaggta 395
>gb|CW161652.1|CW161652 104_568_11150526_148_36435_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150526, DNA
sequence
Length = 670
Score = 153 bits (77), Expect = 2e-035
Identities = 122/137 (89%)
Strand = Plus / Plus
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||||||||||||||||||| |||||| || |||||||| ||||||||||||||||||
Sbjct: 329 aagaccggtaaaggcaagaaggcggctcttccagtgaacaaagacaggttcataagcaag 388
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagtagcctgt 413
|| |||||||||||| || ||||||||||| |||||| |||||||||||||| | |||
Sbjct: 389 attttcctccgtgggaatcgagtcatcattgttctcagggacccgaaatgagtatcttgt 448
Query: 414 acacgtagagagtctat 430
|||||| ||||||||||
Sbjct: 449 acacgtggagagtctat 465
Score = 81.8 bits (41), Expect = 8e-014
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 216 cttggtcgcgtgcgagccttcgatcggcactgcaacatggttcttgagaacgttagggag 275
|||||||||||| | ||||| |||||||| ||||||||| |||| |||||||||||||||
Sbjct: 169 cttggtcgcgtgagtgcctttgatcggcattgcaacatgtttctcgagaacgttagggag 228
Query: 276 atgtg 280
|||||
Sbjct: 229 atgtg 233
>gb|CW266016.1|CW266016 104_735_11232200_148_35266_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232200, DNA
sequence
Length = 674
Score = 153 bits (77), Expect = 2e-035
Identities = 122/137 (89%)
Strand = Plus / Plus
Query: 294 aagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaag 353
||||||||||||||||||||| |||||| || |||||||| ||||||||||||||||||
Sbjct: 140 aagaccggtaaaggcaagaaggcggctcttccagtgaacaaagacaggttcataagcaag 199
Query: 354 atgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagtagcctgt 413
|| |||||||||||| || ||||||||||| |||||| |||||||||||||| | |||
Sbjct: 200 attttcctccgtgggaatcgagtcatcattgttctcagggacccgaaatgagtatcttgt 259
Query: 414 acacgtagagagtctat 430
|||||| ||||||||||
Sbjct: 260 acacgtggagagtctat 276
Score = 63.9 bits (32), Expect = 2e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtg 280
|||||||| ||||||||| |||| ||||||||||||||||||||
Sbjct: 1 gatcggcattgcaacatgtttctcgagaacgttagggagatgtg 44
>gb|BE596069.1|BE596069 PI1_51_C11.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 618
Score = 153 bits (77), Expect = 2e-035
Identities = 230/281 (81%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||| ||||| || ||||| || ||||| || || || |||||||| || ||||| ||
Sbjct: 160 gaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaagaacaac 219
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|||||||| || ||||| ||||| ||||||||||| | ||||| || || || || ||
Sbjct: 220 acccaggtgctcatcaattgccgcaacaacaagaaactacttggccgggttcgcgctttt 279
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
||||| ||||| |||||||| || |||||||| ||||||||||||| ||||| || |||
Sbjct: 280 gatcgccactgtaacatggtgctcgagaacgtgcgggagatgtggacagaggtccccaag 339
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| || || ||||| ||||||||||| || ||||||||||| || ||||| |||||||||
Sbjct: 340 actggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagcaagatg 399
Query: 357 ttcctccgtggggattcggtcatcattgtcctcaggaaccc 397
|||||| | || || ||||||||||| || || ||||||||
Sbjct: 400 ttcctcaggggcgactcggtcatcatcgttctgaggaaccc 440
>gb|BE596241.1|BE596241 PI1_51_C11.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 533
Score = 153 bits (77), Expect = 2e-035
Identities = 230/281 (81%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||| ||||| || ||||| || ||||| || || || |||||||| || ||||| ||
Sbjct: 160 gaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaagaacaac 219
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|||||||| || ||||| ||||| ||||||||||| | ||||| || || || || ||
Sbjct: 220 acccaggtgctcatcaattgccgcaacaacaagaaactacttggccgggttcgcgctttt 279
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
||||| ||||| |||||||| || |||||||| ||||||||||||| ||||| || |||
Sbjct: 280 gatcgccactgtaacatggtgctcgagaacgtgcgggagatgtggacagaggtccccaag 339
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| || || ||||| ||||||||||| || ||||||||||| || ||||| |||||||||
Sbjct: 340 actggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagcaagatg 399
Query: 357 ttcctccgtggggattcggtcatcattgtcctcaggaaccc 397
|||||| | || || ||||||||||| || || ||||||||
Sbjct: 400 ttcctcaggggcgactcggtcatcatcgttctgaggaaccc 440
>gb|BF421288.1|BF421288 FM1_7_H02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 457
Score = 149 bits (75), Expect = 4e-034
Identities = 189/227 (83%)
Strand = Plus / Plus
Query: 156 atgatgagcgtcaagaataatacccaggttcttatcaactgccggaacaacaagaagttg 215
|||||||| || ||||| || |||||||| || ||||| ||||| |||||||||||| |
Sbjct: 61 atgatgagtgttaagaacaacacccaggtgctcatcaattgccgcaacaacaagaagcta 120
Query: 216 cttggtcgcgtgcgagccttcgatcggcactgcaacatggttcttgagaacgttagggag 275
||||| || || || || || ||||| ||||| |||||||| || |||||||| |||||
Sbjct: 121 cttggccgggttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgggag 180
Query: 276 atgtggaccgaggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaag 335
|||||||| ||||| || ||||| || || ||||| ||||||||||| || |||||||||
Sbjct: 181 atgtggacagaggtccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 240
Query: 336 gacaggttcataagcaagatgttcctccgtggggattcggtcatcat 382
|| || ||||| ||||||||||||||| | || || |||||||||||
Sbjct: 241 gatagattcatcagcaagatgttcctcaggggtgactcggtcatcat 287
>gb|CW427234.1|CW427234 fsbb001f139b24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f139b24, DNA
sequence
Length = 579
Score = 121 bits (61), Expect = 9e-026
Identities = 117/133 (87%), Gaps = 2/133 (1%)
Strand = Plus / Plus
Query: 298 ccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgt 357
|||||||||| |||||| |||||| || ||||||||| ||||||||||||||||||| |
Sbjct: 16 ccggtaaagg-aagaaggcggctcttccagtgaacaag-acaggttcataagcaagattt 73
Query: 358 tcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgagtagcctgtacac 417
||||||||||| || ||||||||||| |||||| |||||||||||||| | |||||||
Sbjct: 74 tcctccgtgggaatcgagtcatcattgttctcagggacccgaaatgagtatcttgtacac 133
Query: 418 gtagagagtctat 430
|| ||||||||||
Sbjct: 134 gtggagagtctat 146
>gb|BF421370.1|BF421370 FM1_7_H02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 390
Score = 117 bits (59), Expect = 1e-024
Identities = 158/191 (82%)
Strand = Plus / Plus
Query: 156 atgatgagcgtcaagaataatacccaggttcttatcaactgccggaacaacaagaagttg 215
|||||||| || ||||| || |||||||| || ||||| ||||| |||||||||||| |
Sbjct: 196 atgatgagtgttaagaacaacacccaggtgctcatcaattgccgcaacaacaagaagcta 255
Query: 216 cttggtcgcgtgcgagccttcgatcggcactgcaacatggttcttgagaacgttagggag 275
||||| || || || || || ||||| ||||| |||||||| || |||||||| |||||
Sbjct: 256 cttggccgggttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgggag 315
Query: 276 atgtggaccgaggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaag 335
|||||||| ||||| || ||||| || || ||||| ||||||||||| || |||||||||
Sbjct: 316 atgtggacagaggtccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 375
Query: 336 gacaggttcat 346
|| || |||||
Sbjct: 376 gatagattcat 386
>gb|CW355943.1|CW355943 fsbb001f020m20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f020m20, DNA
sequence
Length = 331
Score = 111 bits (56), Expect = 8e-023
Identities = 62/64 (96%)
Strand = Plus / Minus
Query: 109 taaaaaaggaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtca 168
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 65 taaagaaggaggaagaggagttcagcaccggtcctctctcagtgctcatgatgagcgtca 6
Query: 169 agaa 172
||||
Sbjct: 5 agaa 2
Score = 77.8 bits (39), Expect = 1e-012
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 64 cagattgacggctccaattggcgcccatggcggaagaaaccaa 106
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 220 cagatttacggctccaattggcgcccatggcggaagaaaccaa 178
>gb|CW083471.1|CW083471 104_425_10944264_114_32351_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10944264, DNA
sequence
Length = 679
Score = 79.8 bits (40), Expect = 3e-013
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 306 ggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcctccgt 365
||||| ||||||||||| || ||||||||||| || ||||| ||||||||||||||| |
Sbjct: 163 ggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagcaagatgttcctcagg 104
Query: 366 ggggattcggtcatcattgtcctcaggaaccc 397
|| || ||||||||||| || || ||||||||
Sbjct: 103 ggcgactcggtcatcatcgttctgaggaaccc 72
Score = 61.9 bits (31), Expect = 7e-008
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 180 caggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgat 239
||||| || ||||| ||||| ||||||||||| | ||||| || || || || || |||
Sbjct: 385 caggtgctcatcaattgccgcaacaacaagaaactacttggccgggttcgcgcttttgat 326
Query: 240 cggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggta 290
|| ||||| |||||||| || |||||||| ||||||||||||| ||||||
Sbjct: 325 cgccactgtaacatggtgctcgagaacgtgcgggagatgtggacagaggta 275
>gb|CW083472.1|CW083472 104_425_10944264_114_32387_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10944264, DNA
sequence
Length = 629
Score = 79.8 bits (40), Expect = 3e-013
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 306 ggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcctccgt 365
||||| ||||||||||| || ||||||||||| || ||||| ||||||||||||||| |
Sbjct: 164 ggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagcaagatgttcctcagg 105
Query: 366 ggggattcggtcatcattgtcctcaggaaccc 397
|| || ||||||||||| || || ||||||||
Sbjct: 104 ggcgactcggtcatcatcgttctgaggaaccc 73
Score = 61.9 bits (31), Expect = 7e-008
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 180 caggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgat 239
||||| || ||||| ||||| ||||||||||| | ||||| || || || || || |||
Sbjct: 386 caggtgctcatcaattgccgcaacaacaagaaactacttggccgggttcgcgcttttgat 327
Query: 240 cggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggta 290
|| ||||| |||||||| || |||||||| ||||||||||||| ||||||
Sbjct: 326 cgccactgtaacatggtgctcgagaacgtgcgggagatgtggacagaggta 276
>gb|CW355944.1|CW355944 fsbb001f020m20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f020m20, DNA
sequence
Length = 693
Score = 77.8 bits (39), Expect = 1e-012
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 64 cagattgacggctccaattggcgcccatggcggaagaaaccaa 106
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 593 cagatttacggctccaattggcgcccatggcggaagaaaccaa 635
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 cgacgcgccgccgccgtctcgccgc 56
|||||||||||||||||||||||||
Sbjct: 372 cgacgcgccgccgccgtctcgccgc 396
>gb|CW022584.1|CW022584 104_162_10431932_5_30000 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10431932, DNA
sequence
Length = 758
Score = 73.8 bits (37), Expect = 2e-011
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 306 ggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcctccgt 365
||||| ||||||||||| || ||||||||||| || ||||| |||||||||||||||
Sbjct: 420 ggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagcaagatgttcctcang 479
Query: 366 ggggattcggtcatcattgtcctcaggaaccc 397
|| || ||||||||||| || || ||||||||
Sbjct: 480 ggcgactcggtcatcatcgttctgaggaaccc 511
Score = 61.9 bits (31), Expect = 7e-008
Identities = 91/111 (81%)
Strand = Plus / Plus
Query: 180 caggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgat 239
||||| || ||||| ||||| ||||||||||| | ||||| || || || || || |||
Sbjct: 198 caggtgctcatcaattgccgcaacaacaagaaactacttggccgggttcgcgcttttgat 257
Query: 240 cggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggta 290
|| ||||| |||||||| || |||||||| ||||||||||||| ||||||
Sbjct: 258 cgccactgtaacatggtgctcgagaacgtgcgggagatgtggacagaggta 308
>gb|CW246898.1|CW246898 104_707_11221527_148_37606_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221527, DNA
sequence
Length = 680
Score = 73.8 bits (37), Expect = 2e-011
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 306 ggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcctccgt 365
||||| ||||||||||| || ||||||||||| || ||||| |||||||||||||||
Sbjct: 541 ggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagcaagatgttcctcang 600
Query: 366 ggggattcggtcatcattgtcctcaggaaccc 397
|| || ||||||||||| || || ||||||||
Sbjct: 601 ggcgactcggtcatcatcgttctgaggaaccc 632
Score = 61.9 bits (31), Expect = 7e-008
Identities = 91/111 (81%)
Strand = Plus / Plus
Query: 180 caggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgat 239
||||| || ||||| ||||| ||||||||||| | ||||| || || || || || |||
Sbjct: 319 caggtgctcatcaattgccgcaacaacaagaaactacttggccgggttcgcgcttttgat 378
Query: 240 cggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggta 290
|| ||||| |||||||| || |||||||| ||||||||||||| ||||||
Sbjct: 379 cgccactgtaacatggtgctcgagaacgtgcgggagatgtggacagaggta 429
>gb|CW246897.1|CW246897 104_707_11221527_148_35088_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221527, DNA
sequence
Length = 738
Score = 67.9 bits (34), Expect = 1e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 306 ggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcctccgt 365
||||| ||||||||||| || ||||||||||| || ||||| |||||||||||||||
Sbjct: 539 ggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagcaagatgttcctcang 598
Query: 366 ggggattcggtcatcat 382
|| || |||||||||||
Sbjct: 599 ggcgactcggtcatcat 615
Score = 61.9 bits (31), Expect = 7e-008
Identities = 91/111 (81%)
Strand = Plus / Plus
Query: 180 caggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcgat 239
||||| || ||||| ||||| ||||||||||| | ||||| || || || || || |||
Sbjct: 317 caggtgctcatcaattgccgcaacaacaagaaactacttggccgggttcgcgcttttgat 376
Query: 240 cggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggta 290
|| ||||| |||||||| || |||||||| ||||||||||||| ||||||
Sbjct: 377 cgccactgtaacatggtgctcgagaacgtgcgggagatgtggacagaggta 427
>gb|BZ424332.1|BZ424332 id59f09.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id59f09 5', DNA sequence
Length = 735
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 cgacgcgccgccgccgtctcgccgc 56
|||||||||||||||||||||||||
Sbjct: 591 cgacgcgccgccgccgtctcgccgc 615
>gb|CW366442.1|CW366442 fsbb001f039h07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f039h07, DNA
sequence
Length = 665
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 cgacgcgccgccgccgtctcgccgc 56
|||||||||||||||||||||||||
Sbjct: 450 cgacgcgccgccgccgtctcgccgc 474
>gb|CL188794.1|CL188794 104_405_10901841_114_32452_039 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901841, DNA
sequence
Length = 399
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 37 cgccgccgccgtctcgccgc 56
||||||||||||||||||||
Sbjct: 366 cgccgccgccgtctcgccgc 385
>gb|CL188795.1|CL188795 104_405_10901841_116_32456_039 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901841, DNA
sequence
Length = 663
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 37 cgccgccgccgtctcgccgc 56
||||||||||||||||||||
Sbjct: 595 cgccgccgccgtctcgccgc 576
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 248,687
Number of Sequences: 832831
Number of extensions: 248687
Number of successful extensions: 67830
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67781
Number of HSP's gapped (non-prelim): 48
length of query: 675
length of database: 491,359,669
effective HSP length: 19
effective length of query: 656
effective length of database: 475,535,880
effective search space: 311951537280
effective search space used: 311951537280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)