BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950290.2.2
(867 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE360339.1|BE360339 DG1_62_B04.g1_A002 Dark Grown 1 (DG1... 299 2e-079
gb|CD233298.1|CD233298 SS1_13_D09.b1_A012 Salt-stressed see... 297 9e-079
gb|CL183506.1|CL183506 104_396_10898219_114_31923_059 Sorgh... 82 1e-013
gb|CW346003.1|CW346003 104_849_11488796_116_36220_076 Sorgh... 82 1e-013
gb|CW346004.1|CW346004 104_849_11488796_148_36219_076 Sorgh... 82 1e-013
gb|CW355112.1|CW355112 fsbb001f019j21f0 Sorghum methylation... 66 6e-009
gb|CX606119.1|CX606119 ANR1_1_F05.b1_A002 Anaerobic roots S... 66 6e-009
gb|CL183507.1|CL183507 104_396_10898219_116_31924_059 Sorgh... 58 1e-006
gb|BZ691568.1|BZ691568 SP__Ba0009P06.r SP__Ba Sorghum propi... 42 0.084
gb|CW112472.1|CW112472 104_486_11104906_148_34542_041 Sorgh... 42 0.084
gb|CW785276.1|CW785276 SP__Ba0009P06.r SP__Ba Sorghum propi... 42 0.084
gb|CB928401.1|CB928401 ABA1_15_C02.g1_A012 Abscisic acid-tr... 40 0.33
gb|CB928548.1|CB928548 ABA1_16_C02.g1_A012 Abscisic acid-tr... 40 0.33
gb|CB928577.1|CB928577 ABA1_16_C01.g1_A012 Abscisic acid-tr... 40 0.33
gb|CB928729.1|CB928729 ABA1_17_C01.g1_A012 Abscisic acid-tr... 40 0.33
gb|CB928861.1|CB928861 ABA1_24_C01.g1_A012 Abscisic acid-tr... 40 0.33
>gb|BE360339.1|BE360339 DG1_62_B04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 615
Score = 299 bits (151), Expect = 2e-079
Identities = 211/230 (91%), Gaps = 2/230 (0%)
Strand = Plus / Minus
Query: 297 taaaagttagcatcaccttaatagagttcctcatttt--aacttgctcaggaaaccaact 354
||||||||||||||| |||||||||||| ||| ||| ||| ||||||| |||||||||
Sbjct: 230 taaaagttagcatcagtttaatagagttcttcacttttcaacctgctcagaaaaccaact 171
Query: 355 ctaaccattttgcctattcctgctaatccagtatgtaatctgcagtactttcaatctaag 414
|||||||||| || |||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct: 170 ctaaccatttcacccattcctgctaatccagcatgtagtctgcagtactttctatctaag 111
Query: 415 gttcattcacatctgtaggatagcttccaagaactcttaaaaatgttgcaaactccttca 474
|||||||||||||| |||||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 110 gttcattcacatctacaggatagcttccgaggactcttaaaaaggttgcaaactccttca 51
Query: 475 gatttccaagagcattctgagtctttggatcagccattgatgcttcaagg 524
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 gatttccaagagcattctgagtctttggatcagccattgatgcttcaagg 1
Score = 58.0 bits (29), Expect = 1e-006
Identities = 78/92 (84%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 18 tcttagacattgtcccattatttcactgtaactgtgctttagcaacctgcatgctaccat 77
||||| ||| || ||||||||| || |||||||| |||| ||||||||||||||||||
Sbjct: 576 tcttaaacactggcccattattccaatgtaactgcattttaacaacctgcatgctaccat 517
Query: 78 gacacagattctccaacatg-aaacatataaa 108
| ||||| |||||||||| |||||||||||
Sbjct: 516 g--acagacactccaacatgaaaacatataaa 487
Score = 54.0 bits (27), Expect = 2e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 117 attgaagtatttccgaatattcaaccctttggtatccat 155
|||||||||||||| |||||||||||| ||||| |||||
Sbjct: 458 attgaagtatttccaaatattcaaccccttggtctccat 420
>gb|CD233298.1|CD233298 SS1_13_D09.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_13_D09_A012 3', mRNA sequence
Length = 654
Score = 297 bits (150), Expect = 9e-079
Identities = 210/229 (91%), Gaps = 2/229 (0%)
Strand = Plus / Minus
Query: 297 taaaagttagcatcaccttaatagagttcctcatttt--aacttgctcaggaaaccaact 354
||||||||||||||| |||||||||||| ||| ||| ||| ||||||| |||||||||
Sbjct: 229 taaaagttagcatcagtttaatagagttcttcacttttcaacctgctcagaaaaccaact 170
Query: 355 ctaaccattttgcctattcctgctaatccagtatgtaatctgcagtactttcaatctaag 414
|||||||||| || |||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct: 169 ctaaccatttcacccattcctgctaatccagcatgtagtctgcagtactttctatctaag 110
Query: 415 gttcattcacatctgtaggatagcttccaagaactcttaaaaatgttgcaaactccttca 474
|||||||||||||| |||||||||||| || ||||||||||| ||||||||||||||||
Sbjct: 109 gttcattcacatctacaggatagcttccgaggactcttaaaaaggttgcaaactccttca 50
Query: 475 gatttccaagagcattctgagtctttggatcagccattgatgcttcaag 523
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 gatttccaagagcattctgagtctttggatcagccattgatgcttcaag 1
Score = 73.8 bits (37), Expect = 2e-011
Identities = 80/92 (86%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 18 tcttagacattgtcccattatttcactgtaactgtgctttagcaacctgcatgctaccat 77
||||||||| |||||||||||| || |||||||| |||| ||||||||||||||||||
Sbjct: 575 tcttagacactgtcccattattccaatgtaactgcattttaacaacctgcatgctaccat 516
Query: 78 gacacagattctccaacatg-aaacatataaa 108
| ||||| |||||||||| |||||||||||
Sbjct: 515 g--acagacactccaacatgaaaacatataaa 486
Score = 54.0 bits (27), Expect = 2e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 117 attgaagtatttccgaatattcaaccctttggtatccat 155
|||||||||||||| |||||||||||| ||||| |||||
Sbjct: 457 attgaagtatttccaaatattcaaccccttggtctccat 419
>gb|CL183506.1|CL183506 104_396_10898219_114_31923_059 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898219, DNA
sequence
Length = 673
Score = 81.8 bits (41), Expect = 1e-013
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 723 gtgcgaggtatgatgggttctcgagctagcatcataaaacgggtgacattatctttgtca 782
|||||||| || |||||||||||||| |||||||||| |||||||||||| ||| |||||
Sbjct: 250 gtgcgaggaataatgggttctcgagccagcatcataagacgggtgacattgtctgtgtca 191
Query: 783 tcctg 787
|||||
Sbjct: 190 tcctg 186
>gb|CW346003.1|CW346003 104_849_11488796_116_36220_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488796, DNA
sequence
Length = 664
Score = 81.8 bits (41), Expect = 1e-013
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 723 gtgcgaggtatgatgggttctcgagctagcatcataaaacgggtgacattatctttgtca 782
|||||||| || |||||||||||||| |||||||||| |||||||||||| ||| |||||
Sbjct: 489 gtgcgaggaataatgggttctcgagccagcatcataagacgggtgacattgtctgtgtca 430
Query: 783 tcctg 787
|||||
Sbjct: 429 tcctg 425
>gb|CW346004.1|CW346004 104_849_11488796_148_36219_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488796, DNA
sequence
Length = 757
Score = 81.8 bits (41), Expect = 1e-013
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 723 gtgcgaggtatgatgggttctcgagctagcatcataaaacgggtgacattatctttgtca 782
|||||||| || |||||||||||||| |||||||||| |||||||||||| ||| |||||
Sbjct: 310 gtgcgaggaataatgggttctcgagccagcatcataagacgggtgacattgtctgtgtca 369
Query: 783 tcctg 787
|||||
Sbjct: 370 tcctg 374
>gb|CW355112.1|CW355112 fsbb001f019j21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019j21, DNA
sequence
Length = 805
Score = 65.9 bits (33), Expect = 6e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 723 gtgcgaggtatgatgggttctcgagctagcatcataaaacgggtgacat 771
|||||||| || |||||||||||||| |||||||||| |||||||||||
Sbjct: 49 gtgcgaggaataatgggttctcgagccagcatcataagacgggtgacat 1
Score = 58.0 bits (29), Expect = 1e-006
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 481 caagagcattctgagtctttggatcagccattgatgcttcaaggtcaacataaaaaaggt 540
|||||||| | |||| ||||||||||||||||| |||||||| || ||||| || ||||
Sbjct: 624 caagagcactttgagcatttggatcagccattgacgcttcaagatctacatagaagaggt 565
Query: 541 aatcaaagt 549
| |||||||
Sbjct: 564 agtcaaagt 556
>gb|CX606119.1|CX606119 ANR1_1_F05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_1_F05_A002 3', mRNA sequence
Length = 404
Score = 65.9 bits (33), Expect = 6e-009
Identities = 79/92 (85%), Gaps = 3/92 (3%)
Strand = Plus / Minus
Query: 18 tcttagacattgtcccattatttcactgtaactgtgctttagcaacctgcatgctaccat 77
||||| ||| |||||||||||| || |||||||| |||| ||||||||||||||||||
Sbjct: 320 tcttaaacactgtcccattattccaatgtaactgcattttaacaacctgcatgctaccat 261
Query: 78 gacacagattctccaacatg-aaacatataaa 108
| ||||| |||||||||| |||||||||||
Sbjct: 260 g--acagacactccaacatgaaaacatataaa 231
Score = 54.0 bits (27), Expect = 2e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 117 attgaagtatttccgaatattcaaccctttggtatccat 155
|||||||||||||| |||||||||||| ||||| |||||
Sbjct: 202 attgaagtatttccaaatattcaaccccttggtctccat 164
>gb|CL183507.1|CL183507 104_396_10898219_116_31924_059 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898219, DNA
sequence
Length = 683
Score = 58.0 bits (29), Expect = 1e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 481 caagagcattctgagtctttggatcagccattgatgcttcaaggtcaacataaaaaaggt 540
|||||||| | |||| ||||||||||||||||| |||||||| || ||||| || ||||
Sbjct: 271 caagagcactttgagcatttggatcagccattgacgcttcaagatctacatagaagaggt 330
Query: 541 aatcaaagt 549
| |||||||
Sbjct: 331 agtcaaagt 339
>gb|BZ691568.1|BZ691568 SP__Ba0009P06.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0009P06 3', DNA sequence
Length = 864
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 201 acatcagactttcctctcaat 221
|||||||||||||||||||||
Sbjct: 778 acatcagactttcctctcaat 758
>gb|CW112472.1|CW112472 104_486_11104906_148_34542_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104906, DNA
sequence
Length = 681
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 201 acatcagactttcctctcaat 221
|||||||||||||||||||||
Sbjct: 634 acatcagactttcctctcaat 614
>gb|CW785276.1|CW785276 SP__Ba0009P06.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0009P06 3', DNA sequence
Length = 836
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 201 acatcagactttcctctcaat 221
|||||||||||||||||||||
Sbjct: 732 acatcagactttcctctcaat 712
>gb|CB928401.1|CB928401 ABA1_15_C02.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_15_C02_A012 5', mRNA sequence
Length = 298
Score = 40.1 bits (20), Expect = 0.33
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 841 gtgccgaat-cctgcagcccgggggatc 867
||||||||| ||||||||||||||||||
Sbjct: 89 gtgccgaattcctgcagcccgggggatc 62
>gb|CB928548.1|CB928548 ABA1_16_C02.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_16_C02_A012 5', mRNA sequence
Length = 413
Score = 40.1 bits (20), Expect = 0.33
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 841 gtgccgaat-cctgcagcccgggggatc 867
||||||||| ||||||||||||||||||
Sbjct: 89 gtgccgaattcctgcagcccgggggatc 62
>gb|CB928577.1|CB928577 ABA1_16_C01.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_16_C01_A012 5', mRNA sequence
Length = 368
Score = 40.1 bits (20), Expect = 0.33
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 841 gtgccgaat-cctgcagcccgggggatc 867
||||||||| ||||||||||||||||||
Sbjct: 89 gtgccgaattcctgcagcccgggggatc 62
>gb|CB928729.1|CB928729 ABA1_17_C01.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_17_C01_A012 5', mRNA sequence
Length = 457
Score = 40.1 bits (20), Expect = 0.33
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 841 gtgccgaat-cctgcagcccgggggatc 867
||||||||| ||||||||||||||||||
Sbjct: 90 gtgccgaattcctgcagcccgggggatc 63
>gb|CB928861.1|CB928861 ABA1_24_C01.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_24_C01_A012 5', mRNA sequence
Length = 228
Score = 40.1 bits (20), Expect = 0.33
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 841 gtgccgaat-cctgcagcccgggggatc 867
||||||||| ||||||||||||||||||
Sbjct: 89 gtgccgaattcctgcagcccgggggatc 62
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 205,674
Number of Sequences: 832831
Number of extensions: 205674
Number of successful extensions: 55747
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 55715
Number of HSP's gapped (non-prelim): 32
length of query: 867
length of database: 491,359,669
effective HSP length: 20
effective length of query: 847
effective length of database: 474,703,049
effective search space: 402073482503
effective search space used: 402073482503
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)