BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950290.2.1
(1442 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX606212.1|CX606212 ANR1_1_F05.g1_A002 Anaerobic roots S... 607 e-171
gb|CD233390.1|CD233390 SS1_13_D09.g1_A012 Salt-stressed see... 507 e-142
gb|BE360339.1|BE360339 DG1_62_B04.g1_A002 Dark Grown 1 (DG1... 244 2e-062
gb|CD233298.1|CD233298 SS1_13_D09.b1_A012 Salt-stressed see... 242 8e-062
gb|CW215240.1|CW215240 104_647_11194436_148_37163_072 Sorgh... 145 1e-032
gb|CL183506.1|CL183506 104_396_10898219_114_31923_059 Sorgh... 82 2e-013
gb|CW346003.1|CW346003 104_849_11488796_116_36220_076 Sorgh... 82 2e-013
gb|CW346004.1|CW346004 104_849_11488796_148_36219_076 Sorgh... 82 2e-013
gb|CW355112.1|CW355112 fsbb001f019j21f0 Sorghum methylation... 66 1e-008
gb|CX606119.1|CX606119 ANR1_1_F05.b1_A002 Anaerobic roots S... 66 1e-008
gb|CL183507.1|CL183507 104_396_10898219_116_31924_059 Sorgh... 58 2e-006
>gb|CX606212.1|CX606212 ANR1_1_F05.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_1_F05_A002 5', mRNA sequence
Length = 752
Score = 607 bits (306), Expect = e-171
Identities = 434/478 (90%), Gaps = 9/478 (1%)
Strand = Plus / Plus
Query: 53 cggcgtcgagtctgtggacgttaacgggttgcgtcgcccgccagcgc---------ccgc 103
||||||||||||||||||||| |||||||||||||| ||||| |||| || |
Sbjct: 275 cggcgtcgagtctgtggacgtcaacgggttgcgtcggccgcccgcgcctgtctccacccc 334
Query: 104 ctccgtccccgccgcccgcgatccccactggctgcctcgtccgctcacaagtgcggacgt 163
| ||||||||| ||||||||||||| | ||||||||||| || ||||| || |||||||
Sbjct: 335 caccgtccccggcgcccgcgatcccaattggctgcctcggccactcactagcgcggacgc 394
Query: 164 catggaggtggacggtattgttctcaaggttgcttaccagggttgtgctggagcgtacag 223
|||||||| |||||| | | ||||||||||||||||||||||| ||||| || |||||
Sbjct: 395 catggaggcggacgggaaggggctcaaggttgcttaccagggttgcgctggggcatacag 454
Query: 224 cgaagcagcagcaaagaaggcgtacccgaattgtgagactgtgccctgtgagcacttcga 283
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 455 cgaagcggcagcaaagaaggcgtacccgaactgtgagactgtgccctgtgagcactttga 514
Query: 284 cactgcatttcaggctgttcaaaactgggtagctgatagggccgtactgccacttgagaa 343
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 515 cactgcatttcacgctgttcaaaactgggtagctgatagggcagtactgccacttgagaa 574
Query: 344 ttcattgggaggtagcatacataggaattatgatcttttgcttcggcatagtttgcacat 403
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 575 ttcattgggaggtagcatacatcggaactatgatcttttgcttcggcatagtttgcacat 634
Query: 404 tgtaggagaagttcgccttgcggttcgccattgcttattagccaatcctggcgtgaagat 463
||| |||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct: 635 tgttggagaagttcgcctcgcagttcgccattgcttgttagccaatcctggcgtgaagat 694
Query: 464 tgaaaacctgaaaagtgctatgagtcatccccaggctcttgcgcaatgtgagcacaca 521
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 695 tgaaaaccttaaaagtgctatgagtcatccccaggctcttgcacaatgtgagcacaca 752
>gb|CD233390.1|CD233390 SS1_13_D09.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_13_D09_A012 5', mRNA sequence
Length = 642
Score = 507 bits (256), Expect = e-142
Identities = 375/416 (90%), Gaps = 9/416 (2%)
Strand = Plus / Plus
Query: 53 cggcgtcgagtctgtggacgttaacgggttgcgtcgcccgccagcgc---------ccgc 103
||||||||||||||||||||| |||||||||||||| ||||| |||| || |
Sbjct: 227 cggcgtcgagtctgtggacgtcaacgggttgcgtcggccgcccgcgcctgtctccacccc 286
Query: 104 ctccgtccccgccgcccgcgatccccactggctgcctcgtccgctcacaagtgcggacgt 163
| ||||||||| ||||||||||||| | ||||||||||| || ||||| || |||||||
Sbjct: 287 caccgtccccggcgcccgcgatcccaattggctgcctcggccactcactagcgcggacgc 346
Query: 164 catggaggtggacggtattgttctcaaggttgcttaccagggttgtgctggagcgtacag 223
|||||||| |||||| | | ||||||||||||||||||||||| ||||| || |||||
Sbjct: 347 catggaggcggacgggaaggggctcaaggttgcttaccagggttgcgctggggcatacag 406
Query: 224 cgaagcagcagcaaagaaggcgtacccgaattgtgagactgtgccctgtgagcacttcga 283
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 407 cgaagcggcagcaaagaaggcgtacccgaactgtgagactgtgccctgtgagcactttga 466
Query: 284 cactgcatttcaggctgttcaaaactgggtagctgatagggccgtactgccacttgagaa 343
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 467 cactgcatttcaggctgttcaaaactgggtagctgatagggcagtactgccacttgagaa 526
Query: 344 ttcattgggaggtagcatacataggaattatgatcttttgcttcggcatagtttgcacat 403
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 527 ttcattgggaggtagcatacatcggaactatgatcttttgcttcggcatagtttgcacat 586
Query: 404 tgtaggagaagttcgccttgcggttcgccattgcttattagccaatcctggcgtga 459
||| |||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct: 587 tgttggagaagttcgcctcgcagttcgccattgcttgttagccaatcctggcgtga 642
>gb|BE360339.1|BE360339 DG1_62_B04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 615
Score = 244 bits (123), Expect = 2e-062
Identities = 147/155 (94%)
Strand = Plus / Plus
Query: 938 ccttgaagcatcaatggctgatccaaagactcagaatgctcttggaaatctgaaggagtt 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccttgaagcatcaatggctgatccaaagactcagaatgctcttggaaatctgaaggagtt 60
Query: 998 tgcaacatttttaagagttcttggaagctatcctacagatgtgaatgaaccttagattga 1057
|||||| ||||||||||| || |||||||||||| ||||||||||||||||||||| ||
Sbjct: 61 tgcaacctttttaagagtcctcggaagctatcctgtagatgtgaatgaaccttagataga 120
Query: 1058 aagtactgcagattacatactggattagcaggaat 1092
|||||||||||| ||||| ||||||||||||||||
Sbjct: 121 aagtactgcagactacatgctggattagcaggaat 155
Score = 58.0 bits (29), Expect = 2e-006
Identities = 78/92 (84%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1280 tttatatgttt-catgttggagaatctgtgtcatggtagcatgcaggttgctaaagcaca 1338
||||||||||| |||||||||| ||||| ||||||||||||||||||| |||| ||
Sbjct: 487 tttatatgttttcatgttggagtgtctgt--catggtagcatgcaggttgttaaaatgca 544
Query: 1339 gttacagtgaaataatgggacaatgtctaaga 1370
|||||| || ||||||||| || ||| |||||
Sbjct: 545 gttacattggaataatgggccagtgtttaaga 576
Score = 54.0 bits (27), Expect = 4e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1233 atggataccaaagggttgaatattcggaaatacttcaat 1271
||||| ||||| |||||||||||| ||||||||||||||
Sbjct: 420 atggagaccaaggggttgaatatttggaaatacttcaat 458
>gb|CD233298.1|CD233298 SS1_13_D09.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone
SS1_13_D09_A012 3', mRNA sequence
Length = 654
Score = 242 bits (122), Expect = 8e-062
Identities = 146/154 (94%)
Strand = Plus / Plus
Query: 939 cttgaagcatcaatggctgatccaaagactcagaatgctcttggaaatctgaaggagttt 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttgaagcatcaatggctgatccaaagactcagaatgctcttggaaatctgaaggagttt 60
Query: 999 gcaacatttttaagagttcttggaagctatcctacagatgtgaatgaaccttagattgaa 1058
||||| ||||||||||| || |||||||||||| ||||||||||||||||||||| |||
Sbjct: 61 gcaacctttttaagagtcctcggaagctatcctgtagatgtgaatgaaccttagatagaa 120
Query: 1059 agtactgcagattacatactggattagcaggaat 1092
||||||||||| ||||| ||||||||||||||||
Sbjct: 121 agtactgcagactacatgctggattagcaggaat 154
Score = 73.8 bits (37), Expect = 4e-011
Identities = 80/92 (86%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1280 tttatatgttt-catgttggagaatctgtgtcatggtagcatgcaggttgctaaagcaca 1338
||||||||||| |||||||||| ||||| ||||||||||||||||||| |||| ||
Sbjct: 486 tttatatgttttcatgttggagtgtctgt--catggtagcatgcaggttgttaaaatgca 543
Query: 1339 gttacagtgaaataatgggacaatgtctaaga 1370
|||||| || |||||||||||| |||||||||
Sbjct: 544 gttacattggaataatgggacagtgtctaaga 575
Score = 54.0 bits (27), Expect = 4e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1233 atggataccaaagggttgaatattcggaaatacttcaat 1271
||||| ||||| |||||||||||| ||||||||||||||
Sbjct: 419 atggagaccaaggggttgaatatttggaaatacttcaat 457
>gb|CW215240.1|CW215240 104_647_11194436_148_37163_072 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11194436, DNA
sequence
Length = 666
Score = 145 bits (73), Expect = 1e-032
Identities = 91/97 (93%)
Strand = Plus / Minus
Query: 201 cagggttgtgctggagcgtacagcgaagcagcagcaaagaaggcgtacccgaattgtgag 260
|||||||| ||||| || ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 216 cagggttgcgctggggcatacagcgaagcggcagcaaagaaggcgtacccgaactgtgag 157
Query: 261 actgtgccctgtgagcacttcgacactgcatttcagg 297
|||||||||||||||||||| ||||||||||||||||
Sbjct: 156 actgtgccctgtgagcactttgacactgcatttcagg 120
Score = 71.9 bits (36), Expect = 2e-010
Identities = 83/100 (83%), Gaps = 9/100 (9%)
Strand = Plus / Minus
Query: 53 cggcgtcgagtctgtggacgttaacgggttgcgtcgcccgccagcgc---------ccgc 103
||||||||||||||||||||| |||||||||||||| ||||| |||| || |
Sbjct: 610 cggcgtcgagtctgtggacgtcaacgggttgcgtcggccgcccgcgcctgtctccacccc 551
Query: 104 ctccgtccccgccgcccgcgatccccactggctgcctcgt 143
| ||||||||| ||||||||||||| | ||||||||||||
Sbjct: 550 caccgtccccggcgcccgcgatcccaattggctgcctcgt 511
Score = 44.1 bits (22), Expect = 0.036
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 147 ctcacaagtgcggacgtcatggaggtggacggtattgttctcaaggttgcttaccagg 204
||||| || ||||||| |||||||| |||||| | | |||||||||||||||||||
Sbjct: 404 ctcactagcgcggacgccatggaggcggacgggaaggggctcaaggttgcttaccagg 347
>gb|CL183506.1|CL183506 104_396_10898219_114_31923_059 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898219, DNA
sequence
Length = 673
Score = 81.8 bits (41), Expect = 2e-013
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 675 caggatgacaaagataatgtcacccgttttatgatgctagctcgagaacccatcatacct 734
|||||||||| ||| |||||||||||| |||||||||| |||||||||||||| || |||
Sbjct: 186 caggatgacacagacaatgtcacccgtcttatgatgctggctcgagaacccattattcct 245
Query: 735 cgcac 739
|||||
Sbjct: 246 cgcac 250
>gb|CW346003.1|CW346003 104_849_11488796_116_36220_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488796, DNA
sequence
Length = 664
Score = 81.8 bits (41), Expect = 2e-013
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 675 caggatgacaaagataatgtcacccgttttatgatgctagctcgagaacccatcatacct 734
|||||||||| ||| |||||||||||| |||||||||| |||||||||||||| || |||
Sbjct: 425 caggatgacacagacaatgtcacccgtcttatgatgctggctcgagaacccattattcct 484
Query: 735 cgcac 739
|||||
Sbjct: 485 cgcac 489
Score = 58.0 bits (29), Expect = 2e-006
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 496 aggctcttgcgcaatgtgagcacacattaacatcactaggaattgagcatagagaagctg 555
|||||||||| |||||||| || ||||| || | ||| |||||||||||| |||||||
Sbjct: 8 aggctcttgcacaatgtgaacaaacattgaccaaattagaaattgagcatagggaagctg 67
Query: 556 ttgacgacactgctggtgcagcaaa 580
|||| || || || |||||||||||
Sbjct: 68 ttgatgatacagcaggtgcagcaaa 92
>gb|CW346004.1|CW346004 104_849_11488796_148_36219_076 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488796, DNA
sequence
Length = 757
Score = 81.8 bits (41), Expect = 2e-013
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 675 caggatgacaaagataatgtcacccgttttatgatgctagctcgagaacccatcatacct 734
|||||||||| ||| |||||||||||| |||||||||| |||||||||||||| || |||
Sbjct: 374 caggatgacacagacaatgtcacccgtcttatgatgctggctcgagaacccattattcct 315
Query: 735 cgcac 739
|||||
Sbjct: 314 cgcac 310
Score = 50.1 bits (25), Expect = 6e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 536 aattgagcatagagaagctgttgacgacactgctggtgcagcaaa 580
|||||||||||| ||||||||||| || || || |||||||||||
Sbjct: 751 aattgagcatagggaagctgttgatgatacagcaggtgcagcaaa 707
>gb|CW355112.1|CW355112 fsbb001f019j21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019j21, DNA
sequence
Length = 805
Score = 65.9 bits (33), Expect = 1e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 691 atgtcacccgttttatgatgctagctcgagaacccatcatacctcgcac 739
||||||||||| |||||||||| |||||||||||||| || ||||||||
Sbjct: 1 atgtcacccgtcttatgatgctggctcgagaacccattattcctcgcac 49
Score = 58.0 bits (29), Expect = 2e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 913 actttgattaccttttttatgttgaccttgaagcatcaatggctgatccaaagactcaga 972
||||||| ||||| || ||||| || |||||||| ||||||||||||||||| |||| |
Sbjct: 556 actttgactacctcttctatgtagatcttgaagcgtcaatggctgatccaaatgctcaaa 615
Query: 973 atgctcttg 981
||||||||
Sbjct: 616 gtgctcttg 624
>gb|CX606119.1|CX606119 ANR1_1_F05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_1_F05_A002 3', mRNA sequence
Length = 404
Score = 65.9 bits (33), Expect = 1e-008
Identities = 79/92 (85%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1280 tttatatgttt-catgttggagaatctgtgtcatggtagcatgcaggttgctaaagcaca 1338
||||||||||| |||||||||| ||||| ||||||||||||||||||| |||| ||
Sbjct: 231 tttatatgttttcatgttggagtgtctgt--catggtagcatgcaggttgttaaaatgca 288
Query: 1339 gttacagtgaaataatgggacaatgtctaaga 1370
|||||| || |||||||||||| ||| |||||
Sbjct: 289 gttacattggaataatgggacagtgtttaaga 320
Score = 54.0 bits (27), Expect = 4e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1233 atggataccaaagggttgaatattcggaaatacttcaat 1271
||||| ||||| |||||||||||| ||||||||||||||
Sbjct: 164 atggagaccaaggggttgaatatttggaaatacttcaat 202
>gb|CL183507.1|CL183507 104_396_10898219_116_31924_059 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898219, DNA
sequence
Length = 683
Score = 58.0 bits (29), Expect = 2e-006
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 913 actttgattaccttttttatgttgaccttgaagcatcaatggctgatccaaagactcaga 972
||||||| ||||| || ||||| || |||||||| ||||||||||||||||| |||| |
Sbjct: 339 actttgactacctcttctatgtagatcttgaagcgtcaatggctgatccaaatgctcaaa 280
Query: 973 atgctcttg 981
||||||||
Sbjct: 279 gtgctcttg 271
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 366,239
Number of Sequences: 832831
Number of extensions: 366239
Number of successful extensions: 100899
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100855
Number of HSP's gapped (non-prelim): 39
length of query: 1442
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1422
effective length of database: 474,703,049
effective search space: 675027735678
effective search space used: 675027735678
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)