BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950225.2.1
(3330 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE919101.1|BE919101 FM1_3_B06.b1_A003 Floral-Induced Mer... 745 0.0
gb|BI245888.1|BI245888 IP1_64_G09.b1_A002 Immature pannicle... 676 0.0
gb|CW092098.1|CW092098 104_454_10998943_116_33042_026 Sorgh... 668 0.0
gb|CW446648.1|CW446648 fsbb001f179g13f0 Sorghum methylation... 476 e-132
gb|CW092097.1|CW092097 104_454_10998943_114_33038_026 Sorgh... 436 e-120
gb|CL170774.1|CL170774 104_371_10814055_116_31791_375 Sorgh... 408 e-111
gb|CW091533.1|CW091533 104_453_10998611_116_33034_040 Sorgh... 408 e-111
gb|CW286220.1|CW286220 104_763_11410763_148_35505_034 Sorgh... 408 e-111
gb|CW481989.1|CW481989 fsbb001f241n16f0 Sorghum methylation... 408 e-111
gb|CW328083.1|CW328083 104_824_11479106_116_35986_013 Sorgh... 359 1e-096
gb|BE919026.1|BE919026 FM1_3_B06.g1_A003 Floral-Induced Mer... 343 6e-092
gb|CL170775.1|CL170775 104_371_10814055_148_31790_375 Sorgh... 339 1e-090
gb|BI245817.1|BI245817 IP1_64_G09.g1_A002 Immature pannicle... 339 1e-090
gb|CW328084.1|CW328084 104_824_11479106_148_35985_013 Sorgh... 246 1e-062
gb|CW363198.1|CW363198 fsbb001f034k06f0 Sorghum methylation... 242 2e-061
gb|CW478215.1|CW478215 fsbb001f235p18f0 Sorghum methylation... 240 7e-061
gb|CW317890.1|CW317890 104_809_11473656_116_35860_082 Sorgh... 198 2e-048
gb|CW375789.1|CW375789 fsbb001f053f06f0 Sorghum methylation... 198 2e-048
gb|CW286219.1|CW286219 104_763_11410763_116_35509_034 Sorgh... 145 3e-032
gb|CW318805.1|CW318805 104_811_11474148_148_35885_046 Sorgh... 103 1e-019
gb|CL155405.1|CL155405 104_341_10782104_116_31472_200 Sorgh... 76 2e-011
gb|CL172808.1|CL172808 104_375_10890425_148_31796_329 Sorgh... 76 2e-011
gb|CW277691.1|CW277691 104_751_11406162_116_35410_065 Sorgh... 76 2e-011
gb|CW342955.1|CW342955 104_845_11487158_116_36188_063 Sorgh... 76 2e-011
gb|CL192498.1|CL192498 104_415_10940286_114_32259_025 Sorgh... 54 9e-005
gb|CW139497.1|CW139497 104_529_11135270_116_34907_053 Sorgh... 54 9e-005
gb|CW139498.1|CW139498 104_529_11135270_148_34911_053 Sorgh... 54 9e-005
gb|CW247582.1|CW247582 104_708_11221852_116_36078_006 Sorgh... 54 9e-005
gb|CW254973.1|CW254973 104_719_11225971_148_35126_074 Sorgh... 54 9e-005
gb|BF587785.1|BF587785 FM1_40_E06.g1_A003 Floral-Induced Me... 52 3e-004
gb|BF588338.1|BF588338 FM1_40_E06.b1_A003 Floral-Induced Me... 52 3e-004
gb|CW112174.1|CW112174 104_485_11104740_148_34536_034 Sorgh... 48 0.005
gb|CW279649.1|CW279649 104_754_11407190_148_35440_055 Sorgh... 48 0.005
gb|CW287183.1|CW287183 104_765_11411283_148_35525_012 Sorgh... 48 0.005
gb|CW128153.1|CW128153 104_509_11113849_116_34746_005 Sorgh... 46 0.021
gb|CL181870.1|CL181870 104_393_10897036_148_31921_028 Sorgh... 44 0.083
gb|CW176700.1|CW176700 104_589_11158628_116_36585_068 Sorgh... 44 0.083
gb|CW458570.1|CW458570 fsbb001f204o18f0 Sorghum methylation... 44 0.083
gb|CW493463.1|CW493463 fsbb001f284d22k0 Sorghum methylation... 44 0.083
gb|BZ422316.1|BZ422316 id52c05.b1 WGS-SbicolorF (DH5a methy... 42 0.33
gb|CC059435.1|CC059435 ii23d08.b1 WGS-SbicolorF (DH5a methy... 42 0.33
gb|CL182445.1|CL182445 104_394_10897441_116_31920_049 Sorgh... 42 0.33
gb|CW128372.1|CW128372 104_509_11113967_148_34750_082 Sorgh... 42 0.33
gb|CW134073.1|CW134073 104_518_11117112_148_34817_094 Sorgh... 42 0.33
gb|CW180569.1|CW180569 104_595_11163019_116_36641_078 Sorgh... 42 0.33
gb|CW180570.1|CW180570 104_595_11163019_148_36645_078 Sorgh... 42 0.33
gb|CW278612.1|CW278612 104_753_11406639_116_35425_062 Sorgh... 42 0.33
gb|CW278613.1|CW278613 104_753_11406639_148_35429_062 Sorgh... 42 0.33
gb|CW456299.1|CW456299 fsbb001f201j07k0 Sorghum methylation... 42 0.33
gb|CD206522.1|CD206522 HS1_23_H04.b1_A012 Heat-shocked seed... 42 0.33
>gb|BE919101.1|BE919101 FM1_3_B06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 521
Score = 745 bits (376), Expect = 0.0
Identities = 484/520 (93%)
Strand = Plus / Minus
Query: 1258 ctacttgaatcacccgaaatatctttgtatgagtgcttcagtgtggctgagaaagtgaac 1317
|||||||||||| | |||||||||||||||||| ||||||| ||||||||||| |||||
Sbjct: 521 ctacttgaatcaactgaaatatctttgtatgagcgcttcagcgtggctgagaatgtgaat 462
Query: 1318 gtgcttccaacagaaggatggctggtgaaacttatctgcccacccataagttcagctaga 1377
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gtgcttccaacaaaaggacggctggtgaaacttatctgcccacccataagttcagctaga 402
Query: 1378 cacttgctgatgcttaaaccgatgccagtaccaccataattccttgaagttgaactgtca 1437
||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 401 cacttgctgatacttagaccaatgccagtaccaccataattccttgaagttgaactatca 342
Query: 1438 gcctgcataaacggtgtaaaaacacgatcttgtgcttgcagtggtatcccgacacctgtg 1497
||||||||||| |||||||| |||||||| |||||||||| ||||||||| |||||||||
Sbjct: 341 gcctgcataaaaggtgtaaacacacgatcctgtgcttgcaatggtatcccaacacctgtg 282
Query: 1498 tcctcaatacttattgctagtgtgacacgatctgaatcactttgattagagttttcgccc 1557
|||||||||||||| |||||||||||| | |||||||||||| ||||||| |||||||||
Sbjct: 281 tcctcaatacttatcgctagtgtgacatggtctgaatcacttagattagaattttcgccc 222
Query: 1558 tcaagatcatccaaaagcgactccttatcagagaggagcagtttaaaatattgccaacta 1617
||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 221 tcaagatcatccaaaagtgactccttattagagaggagcagcttaaaatattgccaacta 162
Query: 1618 tttcgtctgtctgctgcttcaaacccactcaaagtattgaaggcaccattagctgttgac 1677
|| ||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 161 ttccgtctgtctgccgcttcaaacccactcaaagtattgaaggcgccattagttgttgac 102
Query: 1678 tcaactctaccacctttgccattcatggctccatgtaggacctgattggcttccatattt 1737
|||||| ||||| |||| |||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 101 tcaactttaccatctttcccattcatggttccatgtaggacctgattagcttccatattt 42
Query: 1738 gagttttcagccaaacacacccgcacaaatacatgacctc 1777
||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 41 gagttctcagccaaacagacccgcacaaatacatgacctc 2
>gb|BI245888.1|BI245888 IP1_64_G09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 448
Score = 676 bits (341), Expect = 0.0
Identities = 418/443 (94%), Gaps = 3/443 (0%)
Strand = Plus / Minus
Query: 2366 tttcatgcttcctaaatggatctccaaaatccaacatgctaacatgcaagaaaggcactt 2425
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 448 tttcatgcctcctaaatggatctccaaaatccaacatgctaacatgcaa---aggcactt 392
Query: 2426 gctcgtccaaacttgaaggtccatacaaaaccatagcatctgaagcatttgtgacatcat 2485
| || |||||| ||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 391 gttcatccaaaattgaaggtccatacaaagccataggctctgaagcatttgtgacatcat 332
Query: 2486 agacatttaccacaatatcctgattgccagcaagtttgctcaacaaattctccacaagtg 2545
||||||| |||||||||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct: 331 agacattaaccacaatatcctgattgccagcaagtttgcttagcaaattttccacaagtg 272
Query: 2546 actccacatcaaaggctccaccgagatatccgatagttgcttccacacgttgctcaactg 2605
|||||||||| || ||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 271 actccacatcgaatcctccaccaagatatccaatagttgcttccacacgttgctcaactg 212
Query: 2606 atgcatcagcagggagatcagggcggtacacagcaaacgtgagaactactcccaagtggt 2665
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 211 atgcatcagcagggagatcagggcggtacacagcaaaagtgagaactactcccaagtggt 152
Query: 2666 ttgatccaagcaaccgaaatgggtttgttaacacagctttgccagtagtcctggcccgga 2725
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 151 ttgatccaagcaaacggaatgggtttgttaacacagctttgccagtagtcctggcccgca 92
Query: 2726 aaatgttttctcggtcctcctccccagacatcatgtcaatgcgtgcaaggtaggaaaccg 2785
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 91 aaatgttttcttggtcctcctccccagacatcatgtcaatgcgtgcaaggtaggaaactg 32
Query: 2786 tatcctgagagaaaatcactggg 2808
|||||||||||||||||||||||
Sbjct: 31 tatcctgagagaaaatcactggg 9
>gb|CW092098.1|CW092098 104_454_10998943_116_33042_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998943, DNA
sequence
Length = 725
Score = 668 bits (337), Expect = 0.0
Identities = 448/485 (92%)
Strand = Plus / Minus
Query: 590 acccgtccatctctggcatctgaacatccataaaacatgcatcgaagcgatgcgggggtt 649
|||| ||||||||||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct: 613 acccatccatctctggcatctgaacatccataaaacatgcatgaaaggaatgtgggggtt 554
Query: 650 gaagtagactgatagcatccttgccgctttcaacacagctaacattagcaccatatttct 709
||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct: 553 gaagtagactgatagcatccttgccactttcaacacagctaacattagcaccgtacttct 494
Query: 710 tgagtgcagccgcagcaactctgaggttgactttattatcgtctacgaccaatatattct 769
| |||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct: 493 ttagtgcagctgcagcaactctgagattgactttattatcatctacgaccaatatgttct 434
Query: 770 tcccaaccagcaagcttcgaagaaacgacggccggttttgattatcttttctttcggcta 829
|||||||||||||||| ||||||||||| ||||| |||||||| |||||||||| || |
Sbjct: 433 tcccaaccagcaagctacgaagaaacgatggccgattttgattttcttttcttttgggca 374
Query: 830 tctctactttgagcagttgttgaatagatgaagcgattgtgcttgcccttataggcttac 889
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 373 tctctactttgagcagttgttgaatagatgaagcaattgtgcttgcccttataggcttac 314
Query: 890 acatcacaatatcaaatatggatccatatttgtccttgtcggcttcagaggtgaccaaaa 949
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct: 313 acatcacaatatcaaatatagatccataattgtccttgtcagcttcagaggtgaccaaaa 254
Query: 950 gaactaccttgtgcccatccgacaactgaccgttcttctgctcgcgtagatggttcaata 1009
|||||||||| || |||| |||||| |||| ||||| ||||||||||||||||||||||
Sbjct: 253 gaactaccttaggcgcatcagacaacagaccattcttgtgctcgcgtagatggttcaata 194
Query: 1010 actgaacatctgtctcaggcctccagaagtcactctcaataaaaagaattgatgcctttt 1069
| ||||||||||| |||||||||||||||||||||||||||||||| || | ||||||||
Sbjct: 193 attgaacatctgtttcaggcctccagaagtcactctcaataaaaagcatggttgcctttt 134
Query: 1070 cccta 1074
|||||
Sbjct: 133 cccta 129
>gb|CW446648.1|CW446648 fsbb001f179g13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f179g13, DNA
sequence
Length = 727
Score = 476 bits (240), Expect = e-132
Identities = 312/336 (92%)
Strand = Plus / Minus
Query: 590 acccgtccatctctggcatctgaacatccataaaacatgcatcgaagcgatgcgggggtt 649
|||| ||||||||||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct: 350 acccatccatctctggcatctgaacatccataaaacatgcatgaaaggaatgtgggggtt 291
Query: 650 gaagtagactgatagcatccttgccgctttcaacacagctaacattagcaccatatttct 709
||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct: 290 gaagtagactgatagcatccttgccactttcaacacagctaacattagcaccgtacttct 231
Query: 710 tgagtgcagccgcagcaactctgaggttgactttattatcgtctacgaccaatatattct 769
| |||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct: 230 ttagtgcagctgcagcaactctgagattgactttattatcatctacgaccaatatgttct 171
Query: 770 tcccaaccagcaagcttcgaagaaacgacggccggttttgattatcttttctttcggcta 829
|||||||||||||||| ||||||||||| ||||| |||||||| |||||||||| || |
Sbjct: 170 tcccaaccagcaagctacgaagaaacgatggccgattttgattttcttttcttttgggca 111
Query: 830 tctctactttgagcagttgttgaatagatgaagcgattgtgcttgcccttataggcttac 889
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 110 tctctactttgagcagttgttgaatagatgaagcaattgtgcttgcccttataggcttac 51
Query: 890 acatcacaatatcaaatatggatccatatttgtcct 925
||||||||||||||||||| |||||||| |||||||
Sbjct: 50 acatcacaatatcaaatatagatccataattgtcct 15
Score = 327 bits (165), Expect = 4e-087
Identities = 237/261 (90%)
Strand = Plus / Minus
Query: 332 aaacagccgaatctgtcgttcccactaccaatctggagactgcttggtatagctgctcct 391
||||||| ||||| |||||| ||||||| |||||||||||| ||||| ||||||||||||
Sbjct: 723 aaacagctgaatccgtcgtttccactactaatctggagactacttggcatagctgctcct 664
Query: 392 cgtcgaagggtttagatacgtatccatccattcccgattttatgcactcttcgtaagttg 451
||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||
Sbjct: 663 cgtcgaagggtttagatacatatccatccatacccgattttatacactcttcataagttg 604
Query: 452 cctggataacatcggctgtcattgccagaacaggcagatggtactcggcagttgtcgagc 511
|||||||||||||||||||||||||||||||||||| | ||||||| || |||||||
Sbjct: 603 cctggataacatcggctgtcattgccagaacaggcaaacggtactcaacaaatgtcgagg 544
Query: 512 cttcaatcgaagccaacttgttcttcctttcctcgttcgctttcaactccatttgcctta 571
||||| || ||| ||||||||||||||||||||| || ||||||| ||||||||||||||
Sbjct: 543 cttcagtcaaagacaacttgttcttcctttcctcattagctttcatctccatttgcctta 484
Query: 572 tttgtccggttgcctcaaacc 592
|||||| ||||||||||||||
Sbjct: 483 tttgtctggttgcctcaaacc 463
>gb|CW092097.1|CW092097 104_454_10998943_114_33038_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998943, DNA
sequence
Length = 689
Score = 436 bits (220), Expect = e-120
Identities = 349/389 (89%), Gaps = 6/389 (1%)
Strand = Plus / Plus
Query: 205 atctagtcttgtgagaggccatgtcaggcccattgtcaagggatagagtcagctggacag 264
||||||| ||||||||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct: 293 atctagtgttgtgagaggccatgtcagacc-attgttaagggttagagtcagctggacag 351
Query: 265 aggcaa-gatggtgatgcttcacttcgattgatgaatgagaagtccggtccatcgtattt 323
| |||| |||||||||||||||||||||| |||||||||||| | ||||| | ||||
Sbjct: 352 aagcaaagatggtgatgcttcacttcgat----gaatgagaagtcagatccattgcattt 407
Query: 324 tgaacatcaaacagccgaatctgtcgttcccactaccaatctggagactgcttggtatag 383
||||||| ||||||| ||||| |||||| ||||||| |||||||||||| ||||| ||||
Sbjct: 408 tgaacattaaacagctgaatccgtcgtttccactactaatctggagactacttggcatag 467
Query: 384 ctgctcctcgtcgaagggtttagatacgtatccatccattcccgattttatgcactcttc 443
||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 468 ctgctcctcgtcgaagggtttagatacatatccatccatacccgattttatacactcttc 527
Query: 444 gtaagttgcctggataacatcggctgtcattgccagaacaggcagatggtactcggcagt 503
||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct: 528 ataagttgcctggataacatcggctgtcattgccagaacaggcaaacggtactcaacaaa 587
Query: 504 tgtcgagccttcaatcgaagccaacttgttcttcctttcctcgttcgctttcaactccat 563
||||||| ||||| || ||| ||||||||||||||||||||| || ||||||| ||||||
Sbjct: 588 tgtcgaggcttcagtcaaagacaacttgttcttcctttcctcattagctttcatctccat 647
Query: 564 ttgccttatttgtccggttgcctcaaacc 592
|||||||||||||| ||||||||||||||
Sbjct: 648 ttgccttatttgtctggttgcctcaaacc 676
Score = 198 bits (100), Expect = 2e-048
Identities = 150/166 (90%), Gaps = 8/166 (4%)
Strand = Plus / Plus
Query: 28 gattgcaacgagatgtggtatttccaatgaattgtcagaagacacaacagcctataaaca 87
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 131 gattgcaacgagatgtggtattttcaatgaattgtcagaagatacaacagcctataaaca 190
Query: 88 tcaaagaacaagagagttacagggtgatctacctacactcctctgggctgccgcagcaac 147
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 191 tcaaag---aagagagttacagggtgatctacctacactcctctgggctgccgcagaaac 247
Query: 148 ttcatgtcatgtgtgacacgtagctaactcacggcactttcatctt 193
| |||| ||||| | |||||| |||||||||||||||||||
Sbjct: 248 t-----tcatctgtgatgcatagctagctcacggcactttcatctt 288
>gb|CL170774.1|CL170774 104_371_10814055_116_31791_375 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10814055, DNA
sequence
Length = 739
Score = 408 bits (206), Expect = e-111
Identities = 263/282 (93%)
Strand = Plus / Plus
Query: 2981 ggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatggcgt 3040
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||
Sbjct: 304 ggtcgatggctggaggggacttctcgtagttgaaggtggcgatgagaatggcgatcgcgt 363
Query: 3041 ggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgcaca 3100
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 364 ggacgtggttgacggtgactccaaactgctcctgcagcatcctggccctctcctcgcaca 423
Query: 3101 tgctgacgaggcgctcctcggcgcggtccatgctgtcccggcgcagggtccagtgcatca 3160
|||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||
Sbjct: 424 tgctgacgaggcgctcctcggcgcggtccatgctctgccggcgctgggtccagtgcatca 483
Query: 3161 ccgcggagcagaccaccgcggttagcacccacccggccgctgccagccccctccaccacc 3220
|||||| || | |||||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct: 484 ccgcggcgccggccaccgcgattagcacccacgcggccgctgccagccccctccacctcc 543
Query: 3221 tcttcgtcctcgccgcgcggtacttgccccccatccctgcct 3262
| |||||||||||| || |||||||||| ||||||||||||
Sbjct: 544 tgttcgtcctcgccccggagtacttgcccgccatccctgcct 585
>gb|CW091533.1|CW091533 104_453_10998611_116_33034_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10998611, DNA
sequence
Length = 486
Score = 408 bits (206), Expect = e-111
Identities = 263/282 (93%)
Strand = Plus / Plus
Query: 2981 ggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatggcgt 3040
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||
Sbjct: 81 ggtcgatggctggaggggacttctcgtagttgaaggtggcgatgagaatggcgatcgcgt 140
Query: 3041 ggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgcaca 3100
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 141 ggacgtggttgacggtgactccaaactgctcctgcagcatcctggccctctcctcgcaca 200
Query: 3101 tgctgacgaggcgctcctcggcgcggtccatgctgtcccggcgcagggtccagtgcatca 3160
|||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||
Sbjct: 201 tgctgacgaggcgctcctcggcgcggtccatgctctgccggcgctgggtccagtgcatca 260
Query: 3161 ccgcggagcagaccaccgcggttagcacccacccggccgctgccagccccctccaccacc 3220
|||||| || | |||||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct: 261 ccgcggcgccggccaccgcgattagcacccacgcggccgctgccagccccctccacctcc 320
Query: 3221 tcttcgtcctcgccgcgcggtacttgccccccatccctgcct 3262
| |||||||||||| || |||||||||| ||||||||||||
Sbjct: 321 tgttcgtcctcgccccggagtacttgcccgccatccctgcct 362
>gb|CW286220.1|CW286220 104_763_11410763_148_35505_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410763, DNA
sequence
Length = 530
Score = 408 bits (206), Expect = e-111
Identities = 263/282 (93%)
Strand = Plus / Plus
Query: 2981 ggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatggcgt 3040
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||
Sbjct: 185 ggtcgatggctggaggggacttctcgtagttgaaggtggcgatgagaatggcgatcgcgt 244
Query: 3041 ggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgcaca 3100
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 245 ggacgtggttgacggtgactccaaactgctcctgcagcatcctggccctctcctcgcaca 304
Query: 3101 tgctgacgaggcgctcctcggcgcggtccatgctgtcccggcgcagggtccagtgcatca 3160
|||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||
Sbjct: 305 tgctgacgaggcgctcctcggcgcggtccatgctctgccggcgctgggtccagtgcatca 364
Query: 3161 ccgcggagcagaccaccgcggttagcacccacccggccgctgccagccccctccaccacc 3220
|||||| || | |||||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct: 365 ccgcggcgccggccaccgcgattagcacccacgcggccgctgccagccccctccacctcc 424
Query: 3221 tcttcgtcctcgccgcgcggtacttgccccccatccctgcct 3262
| |||||||||||| || |||||||||| ||||||||||||
Sbjct: 425 tgttcgtcctcgccccggagtacttgcccgccatccctgcct 466
>gb|CW481989.1|CW481989 fsbb001f241n16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f241n16, DNA
sequence
Length = 661
Score = 408 bits (206), Expect = e-111
Identities = 263/282 (93%)
Strand = Plus / Minus
Query: 2981 ggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatggcgt 3040
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||
Sbjct: 528 ggtcgatggctggaggggacttctcgtagttgaaggtggcgatgagaatggcgatcgcgt 469
Query: 3041 ggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgcaca 3100
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 468 ggacgtggttgacggtgactccaaactgctcctgcagcatcctggccctctcctcgcaca 409
Query: 3101 tgctgacgaggcgctcctcggcgcggtccatgctgtcccggcgcagggtccagtgcatca 3160
|||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||
Sbjct: 408 tgctgacgaggcgctcctcggcgcggtccatgctctgccggcgctgggtccagtgcatca 349
Query: 3161 ccgcggagcagaccaccgcggttagcacccacccggccgctgccagccccctccaccacc 3220
|||||| || | |||||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct: 348 ccgcggcgccggccaccgcgattagcacccacgcggccgctgccagccccctccacctcc 289
Query: 3221 tcttcgtcctcgccgcgcggtacttgccccccatccctgcct 3262
| |||||||||||| || |||||||||| ||||||||||||
Sbjct: 288 tgttcgtcctcgccccggagtacttgcccgccatccctgcct 247
>gb|CW328083.1|CW328083 104_824_11479106_116_35986_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479106, DNA
sequence
Length = 484
Score = 359 bits (181), Expect = 1e-096
Identities = 256/281 (91%)
Strand = Plus / Minus
Query: 2982 gtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatggcgtg 3041
|||||||| |||||||||||||||| |||||||||||| ||||||||||||||| |||||
Sbjct: 484 gtcgatggttggaggggacttctcgtagttgaaggtggcgatgagaatggcgatcgcgtg 425
Query: 3042 gacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgcacat 3101
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gacgtggttgacggtgactccaaactgctcctgcagcatcctggccctctcctcgcacat 365
Query: 3102 gctgacgaggcgctcctcggcgcggtccatgctgtcccggcgcagggtccagtgcatcac 3161
||||| ||||||||||| ||||||||||||||| | ||||||| ||||||||||||||||
Sbjct: 364 gctgatgaggcgctcctaggcgcggtccatgctctgccggcgctgggtccagtgcatcac 305
Query: 3162 cgcggagcagaccaccgcggttagcacccacccggccgctgccagccccctccaccacct 3221
|||| || | |||||||| |||||||||| |||| ||||||||||||||||||| |||
Sbjct: 304 cgcgtcgccggccaccgcgattagcacccaggcggcggctgccagccccctccacctcct 245
Query: 3222 cttcgtcctcgccgcgcggtacttgccccccatccctgcct 3262
|||||||||||| || |||||||||| ||||||||||||
Sbjct: 244 gttcgtcctcgccccggagtacttgcccgccatccctgcct 204
>gb|BE919026.1|BE919026 FM1_3_B06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 435
Score = 343 bits (173), Expect = 6e-092
Identities = 266/294 (90%), Gaps = 6/294 (2%)
Strand = Plus / Minus
Query: 205 atctagtcttgtgagaggccatgtcaggcccattgtcaagggatagagtcagctggacag 264
||||||| ||||||||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct: 314 atctagtgttgtgagaggccatgtcagacc-attgttaagggttagagtcagctggacag 256
Query: 265 aggcaa-gatggtgatgcttcacttcgattgatgaatgagaagtccggtccatcgtattt 323
| |||| |||||||||||||||||||||| |||||||||||| | ||||| | ||||
Sbjct: 255 aagcaaagatggtgatgcttcacttcgat----gaatgagaagtcagatccattgcattt 200
Query: 324 tgaacatcaaacagccgaatctgtcgttcccactaccaatctggagactgcttggtatag 383
||||||| ||||||| ||||| |||||| ||||||| |||||||||||| ||||| ||||
Sbjct: 199 tgaacattaaacagctgaatccgtcgtttccactactaatctggagactacttggcatag 140
Query: 384 ctgctcctcgtcgaagggtttagatacgtatccatccattcccgattttatgcactcttc 443
||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 139 ctgctcctcgtcgaagggtttagatacatatccatccatacccgattttatacactcttc 80
Query: 444 gtaagttgcctggataacatcggctgtcattgccagaacaggcagatggtactc 497
||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 79 ataagttgcctggataacatcggctgtcattgccagaacaggcaaacggtactc 26
Score = 121 bits (61), Expect = 4e-025
Identities = 108/123 (87%), Gaps = 8/123 (6%)
Strand = Plus / Minus
Query: 71 acaacagcctataaacatcaaagaacaagagagttacagggtgatctacctacactcctc 130
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 433 acaacagcctataaacatcaaaaaa---gagagttacagggtgatctacctacactcctc 377
Query: 131 tgggctgccgcagcaacttcatgtcatgtgtgacacgtagctaactcacggcactttcat 190
||||||||||||| |||| |||| ||||| | |||||| ||||||||||||||||
Sbjct: 376 tgggctgccgcagaaact-----tcatctgtgatgcatagctagctcacggcactttcat 322
Query: 191 ctt 193
|||
Sbjct: 321 ctt 319
>gb|CL170775.1|CL170775 104_371_10814055_148_31790_375 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10814055, DNA
sequence
Length = 762
Score = 339 bits (171), Expect = 1e-090
Identities = 222/239 (92%)
Strand = Plus / Minus
Query: 3024 gagaatggcgatggcgtggacgtggttgacggtgaccccgaactgctcctgcagcatcct 3083
|||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 762 gagaatggcgatcgcgtggacgtggttgacggtgactccaaactgctcctgcagcatcct 703
Query: 3084 ggccctctcctcgcacatgctgacgaggcgctcctcggcgcggtccatgctgtcccggcg 3143
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 702 ggccctctcctcgcacatgctgacgaggcgctcctcggcgcggtccatgctctgccggcg 643
Query: 3144 cagggtccagtgcatcaccgcggagcagaccaccgcggttagcacccacccggccgctgc 3203
| ||||||||||||||||||||| || | |||||||| ||||||||||| ||||||||||
Sbjct: 642 ctgggtccagtgcatcaccgcggcgccggccaccgcgattagcacccacgcggccgctgc 583
Query: 3204 cagccccctccaccacctcttcgtcctcgccgcgcggtacttgccccccatccctgcct 3262
|||||||||||||| ||| |||||||||||| || |||||||||| ||||||||||||
Sbjct: 582 cagccccctccacctcctgttcgtcctcgccccggagtacttgcccgccatccctgcct 524
>gb|BI245817.1|BI245817 IP1_64_G09.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 506
Score = 339 bits (171), Expect = 1e-090
Identities = 305/344 (88%), Gaps = 8/344 (2%)
Strand = Plus / Minus
Query: 205 atctagtcttgtgagaggccatgtcaggcccattgtcaagggatagagtcagctggacag 264
||||||| ||||||||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct: 342 atctagtgttgtgagaggccatgtcagacc-attgttaagggttagagtcagctggacag 284
Query: 265 aggcaa-gatggtgatgcttcacttcgattgatgaatgagaagtccggtccatcgtattt 323
| |||| |||||||||||||||||||||| |||||||||||| | ||||| | ||||
Sbjct: 283 aagcaaagatggtgatgcttcacttcgat----gaatgagaagtcagatccattgcattt 228
Query: 324 tgaacatcaaacagccgaatctgtcgttcccactaccaatctggagactgcttggtatag 383
||||||| ||||||| ||||| |||||| ||||||| |||||||||||| ||||| ||||
Sbjct: 227 tgaacattaaacagctgaatccgtcgtttccactactaatctggagactacttggcatag 168
Query: 384 ctgctcctcgtcgaagggtttagatacgtatccatccattcccgattttatgcactcttc 443
||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 167 ctgctcctcgtcgaagggtttagatacatatccatccatacccgattttatacactcttc 108
Query: 444 gtaagttgcctggat-aacatcggctgtcattgccagaacaggcagatggtactcggcag 502
|||||||||||||| ||||||||||||||||||||||||||||| | ||||||| ||
Sbjct: 107 ataagttgcctggataaacatcggctgtcattgccagaacaggcaaacggtactcaacaa 48
Query: 503 ttgtcgagccttcaatc-gaagccaacttgttcttcctttcctc 545
||||||| ||||| || ||| ||||||| |||||||||||||
Sbjct: 47 atgtcgaggcttcagtcaaaagacaacttggtcttcctttcctc 4
Score = 198 bits (100), Expect = 2e-048
Identities = 150/166 (90%), Gaps = 8/166 (4%)
Strand = Plus / Minus
Query: 28 gattgcaacgagatgtggtatttccaatgaattgtcagaagacacaacagcctataaaca 87
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 504 gattgcaacgagatgtggtattttcaatgaattgtcagaagatacaacagcctataaaca 445
Query: 88 tcaaagaacaagagagttacagggtgatctacctacactcctctgggctgccgcagcaac 147
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 444 tcaaag---aagagagttacagggtgatctacctacactcctctgggctgccgcagaaac 388
Query: 148 ttcatgtcatgtgtgacacgtagctaactcacggcactttcatctt 193
| |||| ||||| | |||||| |||||||||||||||||||
Sbjct: 387 t-----tcatctgtgatgcatagctagctcacggcactttcatctt 347
>gb|CW328084.1|CW328084 104_824_11479106_148_35985_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479106, DNA
sequence
Length = 657
Score = 246 bits (124), Expect = 1e-062
Identities = 139/144 (96%)
Strand = Plus / Plus
Query: 2981 ggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatggcgt 3040
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||
Sbjct: 514 ggtcgatggctggaggggacttctcgtagttgaaggtggcgatgagaatggcgatcgcgt 573
Query: 3041 ggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgcaca 3100
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 574 ggacgtggttgacggtgactccaaactgctcctgcagcatcctggccctctcctcgcaca 633
Query: 3101 tgctgacgaggcgctcctcggcgc 3124
||||||||||||||||||||||||
Sbjct: 634 tgctgacgaggcgctcctcggcgc 657
>gb|CW363198.1|CW363198 fsbb001f034k06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f034k06, DNA
sequence
Length = 188
Score = 242 bits (122), Expect = 2e-061
Identities = 161/174 (92%)
Strand = Plus / Plus
Query: 2993 gaggggacttctcgaagttgaaggtggagatgagaatggcgatggcgtggacgtggttga 3052
|||||||||||||| || ||||||||| ||||||||||||||| ||| ||||||||||||
Sbjct: 1 gaggggacttctcgtagctgaaggtggcgatgagaatggcgatcgcgaggacgtggttga 60
Query: 3053 cggtgaccccgaactgctcctgcagcatcctggccctctcctcgcacatgctgacgaggc 3112
||| ||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cggcgactccaaactgatcctgcagcatcctggccctctcctcgcacatgctgacgaggc 120
Query: 3113 gctcctcggcgcggtccatgctgtcccggcgcagggtccagtgcatcaccgcgg 3166
||||||||| |||||||||||| | ||||||| |||||||||||||||||||||
Sbjct: 121 gctcctcggagcggtccatgctctgccggcgctgggtccagtgcatcaccgcgg 174
>gb|CW478215.1|CW478215 fsbb001f235p18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235p18, DNA
sequence
Length = 449
Score = 240 bits (121), Expect = 7e-061
Identities = 136/141 (96%)
Strand = Plus / Minus
Query: 2981 ggtcgatggctggaggggacttctcgaagttgaaggtggagatgagaatggcgatggcgt 3040
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||
Sbjct: 142 ggtcgatggctggaggggacttctcgtagttgaaggtggcgatgagaatggcgatcgcgt 83
Query: 3041 ggacgtggttgacggtgaccccgaactgctcctgcagcatcctggccctctcctcgcaca 3100
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 82 ggacgtggttgacggtgactccaaactgctcctgcagcatcctggccctctcctcgcaca 23
Query: 3101 tgctgacgaggcgctcctcgg 3121
|||||||||||||||||||||
Sbjct: 22 tgctgacgaggcgctcctcgg 2
>gb|CW317890.1|CW317890 104_809_11473656_116_35860_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473656, DNA
sequence
Length = 718
Score = 198 bits (100), Expect = 2e-048
Identities = 150/166 (90%), Gaps = 8/166 (4%)
Strand = Plus / Minus
Query: 28 gattgcaacgagatgtggtatttccaatgaattgtcagaagacacaacagcctataaaca 87
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 262 gattgcaacgagatgtggtattttcaatgaattgtcagaagatacaacagcctataaaca 203
Query: 88 tcaaagaacaagagagttacagggtgatctacctacactcctctgggctgccgcagcaac 147
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 202 tcaaag---aagagagttacagggtgatctacctacactcctctgggctgccgcagaaac 146
Query: 148 ttcatgtcatgtgtgacacgtagctaactcacggcactttcatctt 193
| |||| ||||| | |||||| |||||||||||||||||||
Sbjct: 145 t-----tcatctgtgatgcatagctagctcacggcactttcatctt 105
Score = 105 bits (53), Expect = 3e-020
Identities = 82/89 (92%), Gaps = 2/89 (2%)
Strand = Plus / Minus
Query: 205 atctagtcttgtgagaggccatgtcaggcccattgtcaagggatagagtcagctggacag 264
||||||| ||||||||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct: 100 atctagtgttgtgagaggccatgtcagacc-attgttaagggttagagtcagctggacag 42
Query: 265 aggc-aagatggtgatgcttcacttcgat 292
| || ||||||||||||||||||||||||
Sbjct: 41 aagcaaagatggtgatgcttcacttcgat 13
>gb|CW375789.1|CW375789 fsbb001f053f06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f053f06, DNA
sequence
Length = 528
Score = 198 bits (100), Expect = 2e-048
Identities = 150/166 (90%), Gaps = 8/166 (4%)
Strand = Plus / Minus
Query: 28 gattgcaacgagatgtggtatttccaatgaattgtcagaagacacaacagcctataaaca 87
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 174 gattgcaacgagatgtggtattttcaatgaattgtcagaagatacaacagcctataaaca 115
Query: 88 tcaaagaacaagagagttacagggtgatctacctacactcctctgggctgccgcagcaac 147
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 114 tcaaag---aagagagttacagggtgatctacctacactcctctgggctgccgcagaaac 58
Query: 148 ttcatgtcatgtgtgacacgtagctaactcacggcactttcatctt 193
| |||| ||||| | |||||| |||||||||||||||||||
Sbjct: 57 t-----tcatctgtgatgcatagctagctcacggcactttcatctt 17
>gb|CW286219.1|CW286219 104_763_11410763_116_35509_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410763, DNA
sequence
Length = 616
Score = 145 bits (73), Expect = 3e-032
Identities = 106/117 (90%)
Strand = Plus / Minus
Query: 3146 gggtccagtgcatcaccgcggagcagaccaccgcggttagcacccacccggccgctgcca 3205
||||||||||||||||||||| || | |||||||| ||||||||||| ||||||||||||
Sbjct: 614 gggtccagtgcatcaccgcggcgccggccaccgcgattagcacccacgcggccgctgcca 555
Query: 3206 gccccctccaccacctcttcgtcctcgccgcgcggtacttgccccccatccctgcct 3262
|||||||||||| ||| |||||||||||| || |||||||||| ||||||||||||
Sbjct: 554 gccccctccacctcctgttcgtcctcgccccggagtacttgcccgccatccctgcct 498
>gb|CW318805.1|CW318805 104_811_11474148_148_35885_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474148, DNA
sequence
Length = 677
Score = 103 bits (52), Expect = 1e-019
Identities = 103/120 (85%)
Strand = Plus / Minus
Query: 3000 cttctcgaagttgaaggtggagatgagaatggcgatggcgtggacgtggttgacggtgac 3059
||||||| ||| |||||||| || ||| ||||||| |||||||||||||||||||| |||
Sbjct: 462 cttctcgtagtggaaggtggcgacgaggatggcgagggcgtggacgtggttgacggagac 403
Query: 3060 cccgaactgctcctgcagcatcctggccctctcctcgcacatgctgacgaggcgctcctc 3119
||||||| ||||||||||| | || | ||||||||||||||||||||| | ||||||
Sbjct: 402 ggcgaactggtcctgcagcatgcgcgcgcgctcctcgcacatgctgacgagcccctcctc 343
>gb|CL155405.1|CL155405 104_341_10782104_116_31472_200 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10782104, DNA
sequence
Length = 651
Score = 75.8 bits (38), Expect = 2e-011
Identities = 89/106 (83%)
Strand = Plus / Plus
Query: 1349 ttatctgcccacccataagttcagctagacacttgctgatgcttaaaccgatgccagtac 1408
||||||| |||||||| |||||| | ||||| | ||||||||| || || || |||||||
Sbjct: 458 ttatctgaccacccattagttcaacaagacattggctgatgctcaatccaattccagtac 517
Query: 1409 caccataattccttgaagttgaactgtcagcctgcataaacggtgt 1454
||||||| |||| ||||| ||||| ||||||||||| || |||||
Sbjct: 518 caccatatgtcctggaagtcgaactatcagcctgcatgaaaggtgt 563
>gb|CL172808.1|CL172808 104_375_10890425_148_31796_329 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890425, DNA
sequence
Length = 581
Score = 75.8 bits (38), Expect = 2e-011
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 2473 tttgtgacatcatagacatttaccacaatatcctgattgccagcaagtttgctcaacaaa 2532
|||||||||||||| ||||||||||| | ||||||||||||||||| | |||||||||
Sbjct: 527 tttgtgacatcataaacatttaccaccaattcctgattgccagcaagctgcctcaacaaa 468
Query: 2533 ttctccacaagtgactccacatcaaa 2558
|| ||||| | ||| || ||||||||
Sbjct: 467 ttttccactaatgattctacatcaaa 442
>gb|CW277691.1|CW277691 104_751_11406162_116_35410_065 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11406162, DNA
sequence
Length = 692
Score = 75.8 bits (38), Expect = 2e-011
Identities = 89/106 (83%)
Strand = Plus / Minus
Query: 1349 ttatctgcccacccataagttcagctagacacttgctgatgcttaaaccgatgccagtac 1408
||||||| |||||||| |||||| | ||||| | ||||||||| || || || |||||||
Sbjct: 163 ttatctgaccacccattagttcaacaagacattggctgatgctcaatccaattccagtac 104
Query: 1409 caccataattccttgaagttgaactgtcagcctgcataaacggtgt 1454
||||||| |||| ||||| ||||| ||||||||||| || |||||
Sbjct: 103 caccatatgtcctggaagtcgaactatcagcctgcatgaaaggtgt 58
>gb|CW342955.1|CW342955 104_845_11487158_116_36188_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487158, DNA
sequence
Length = 583
Score = 75.8 bits (38), Expect = 2e-011
Identities = 89/106 (83%)
Strand = Plus / Plus
Query: 1349 ttatctgcccacccataagttcagctagacacttgctgatgcttaaaccgatgccagtac 1408
||||||| |||||||| |||||| | ||||| | ||||||||| || || || |||||||
Sbjct: 464 ttatctgaccacccattagttcaacaagacattggctgatgctcaatccaattccagtac 523
Query: 1409 caccataattccttgaagttgaactgtcagcctgcataaacggtgt 1454
||||||| |||| ||||| ||||| ||||||||||| || |||||
Sbjct: 524 caccatatgtcctggaagtcgaactatcagcctgcatgaaaggtgt 569
>gb|CL192498.1|CL192498 104_415_10940286_114_32259_025 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10940286, DNA
sequence
Length = 704
Score = 54.0 bits (27), Expect = 9e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 434 tgcactcttcgtaagttgcctggataacatcggctgtcattgccagaacaggcag 488
|||||||||| | || |||||||| |||||||| |||||||| |||||||||||
Sbjct: 416 tgcactcttcatgggtagcctggatgacatcggcggtcattgcaagaacaggcag 362
>gb|CW139497.1|CW139497 104_529_11135270_116_34907_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135270, DNA
sequence
Length = 679
Score = 54.0 bits (27), Expect = 9e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 434 tgcactcttcgtaagttgcctggataacatcggctgtcattgccagaacaggcag 488
|||||||||| | || |||||||| |||||||| |||||||| |||||||||||
Sbjct: 294 tgcactcttcatgggtagcctggatgacatcggcggtcattgcaagaacaggcag 240
>gb|CW139498.1|CW139498 104_529_11135270_148_34911_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135270, DNA
sequence
Length = 670
Score = 54.0 bits (27), Expect = 9e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 434 tgcactcttcgtaagttgcctggataacatcggctgtcattgccagaacaggcag 488
|||||||||| | || |||||||| |||||||| |||||||| |||||||||||
Sbjct: 389 tgcactcttcatgggtagcctggatgacatcggcggtcattgcaagaacaggcag 443
>gb|CW247582.1|CW247582 104_708_11221852_116_36078_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221852, DNA
sequence
Length = 679
Score = 54.0 bits (27), Expect = 9e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 434 tgcactcttcgtaagttgcctggataacatcggctgtcattgccagaacaggcag 488
|||||||||| | || |||||||| |||||||| |||||||| |||||||||||
Sbjct: 229 tgcactcttcatgggtagcctggatgacatcggcggtcattgcaagaacaggcag 175
>gb|CW254973.1|CW254973 104_719_11225971_148_35126_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11225971, DNA
sequence
Length = 620
Score = 54.0 bits (27), Expect = 9e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 434 tgcactcttcgtaagttgcctggataacatcggctgtcattgccagaacaggcag 488
|||||||||| | || |||||||| |||||||| |||||||| |||||||||||
Sbjct: 180 tgcactcttcatgggtagcctggatgacatcggcggtcattgcaagaacaggcag 126
>gb|BF587785.1|BF587785 FM1_40_E06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 532
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 451 gcctggataacatcggctgtcattgccagaacaggcag 488
|||||||| |||||||| |||||||| |||||||||||
Sbjct: 121 gcctggatgacatcggcagtcattgcaagaacaggcag 84
>gb|BF588338.1|BF588338 FM1_40_E06.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 390
Score = 52.0 bits (26), Expect = 3e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 451 gcctggataacatcggctgtcattgccagaacaggcag 488
|||||||| |||||||| |||||||| |||||||||||
Sbjct: 142 gcctggatgacatcggcagtcattgcaagaacaggcag 105
>gb|CW112174.1|CW112174 104_485_11104740_148_34536_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104740, DNA
sequence
Length = 588
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 3287 cctcctcctctttctcttcctcct 3310
||||||||||||||||||||||||
Sbjct: 477 cctcctcctctttctcttcctcct 454
>gb|CW279649.1|CW279649 104_754_11407190_148_35440_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407190, DNA
sequence
Length = 669
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 3287 cctcctcctctttctcttcctcct 3310
||||||||||||||||||||||||
Sbjct: 470 cctcctcctctttctcttcctcct 447
>gb|CW287183.1|CW287183 104_765_11411283_148_35525_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411283, DNA
sequence
Length = 701
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 3287 cctcctcctctttctcttcctcct 3310
||||||||||||||||||||||||
Sbjct: 68 cctcctcctctttctcttcctcct 45
>gb|CW128153.1|CW128153 104_509_11113849_116_34746_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113849, DNA
sequence
Length = 509
Score = 46.1 bits (23), Expect = 0.021
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3285 ctcctcctcctctttctcttcct 3307
|||||||||||||||||||||||
Sbjct: 332 ctcctcctcctctttctcttcct 354
>gb|CL181870.1|CL181870 104_393_10897036_148_31921_028 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897036, DNA
sequence
Length = 647
Score = 44.1 bits (22), Expect = 0.083
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3285 ctcctcctcctctttctcttcctcct 3310
|||||||||||||| |||||||||||
Sbjct: 271 ctcctcctcctcttcctcttcctcct 296
>gb|CW176700.1|CW176700 104_589_11158628_116_36585_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158628, DNA
sequence
Length = 626
Score = 44.1 bits (22), Expect = 0.083
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3028 atggcgatggcgtggacgtggttgac 3053
||||||| ||||||||||||||||||
Sbjct: 601 atggcgagggcgtggacgtggttgac 626
>gb|CW458570.1|CW458570 fsbb001f204o18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f204o18, DNA
sequence
Length = 575
Score = 44.1 bits (22), Expect = 0.083
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3285 ctcctcctcctctttctcttcctcct 3310
|||||||||||||| |||||||||||
Sbjct: 129 ctcctcctcctcttcctcttcctcct 154
>gb|CW493463.1|CW493463 fsbb001f284d22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f284d22, DNA
sequence
Length = 549
Score = 44.1 bits (22), Expect = 0.083
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 3285 ctcctcctcctctttctcttcctcct 3310
|||||||||||||| |||||||||||
Sbjct: 531 ctcctcctcctcttcctcttcctcct 506
>gb|BZ422316.1|BZ422316 id52c05.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id52c05 5', DNA sequence
Length = 682
Score = 42.1 bits (21), Expect = 0.33
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1171 cttgtaacagcactacgtacaggtc 1195
|||||||||||| ||||||||||||
Sbjct: 421 cttgtaacagcagtacgtacaggtc 397
>gb|CC059435.1|CC059435 ii23d08.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii23d08, DNA sequence
Length = 532
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3290 cctcctctttctcttcctcct 3310
|||||||||||||||||||||
Sbjct: 363 cctcctctttctcttcctcct 383
>gb|CL182445.1|CL182445 104_394_10897441_116_31920_049 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10897441, DNA
sequence
Length = 732
Score = 42.1 bits (21), Expect = 0.33
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1171 cttgtaacagcactacgtacaggtc 1195
|||||||||||| ||||||||||||
Sbjct: 122 cttgtaacagcagtacgtacaggtc 98
>gb|CW128372.1|CW128372 104_509_11113967_148_34750_082 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113967, DNA
sequence
Length = 495
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3290 cctcctctttctcttcctcct 3310
|||||||||||||||||||||
Sbjct: 208 cctcctctttctcttcctcct 228
>gb|CW134073.1|CW134073 104_518_11117112_148_34817_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11117112, DNA
sequence
Length = 564
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 3290 cctcctctttctcttcctcct 3310
|||||||||||||||||||||
Sbjct: 39 cctcctctttctcttcctcct 19
>gb|CW180569.1|CW180569 104_595_11163019_116_36641_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163019, DNA
sequence
Length = 428
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 804 gttttgattatcttttctttc 824
|||||||||||||||||||||
Sbjct: 90 gttttgattatcttttctttc 110
>gb|CW180570.1|CW180570 104_595_11163019_148_36645_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163019, DNA
sequence
Length = 639
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 804 gttttgattatcttttctttc 824
|||||||||||||||||||||
Sbjct: 582 gttttgattatcttttctttc 562
>gb|CW278612.1|CW278612 104_753_11406639_116_35425_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11406639, DNA
sequence
Length = 638
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 804 gttttgattatcttttctttc 824
|||||||||||||||||||||
Sbjct: 361 gttttgattatcttttctttc 381
>gb|CW278613.1|CW278613 104_753_11406639_148_35429_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11406639, DNA
sequence
Length = 730
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 804 gttttgattatcttttctttc 824
|||||||||||||||||||||
Sbjct: 556 gttttgattatcttttctttc 536
>gb|CW456299.1|CW456299 fsbb001f201j07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f201j07, DNA
sequence
Length = 696
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3290 cctcctctttctcttcctcct 3310
|||||||||||||||||||||
Sbjct: 451 cctcctctttctcttcctcct 471
>gb|CD206522.1|CD206522 HS1_23_H04.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_23_H04_A012 3', mRNA sequence
Length = 606
Score = 42.1 bits (21), Expect = 0.33
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 3286 tcctcctcctctttctcttcctcct 3310
||||||||||||| |||||||||||
Sbjct: 440 tcctcctcctcttcctcttcctcct 416
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 861,549
Number of Sequences: 832831
Number of extensions: 861549
Number of successful extensions: 245325
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 245205
Number of HSP's gapped (non-prelim): 101
length of query: 3330
length of database: 491,359,669
effective HSP length: 21
effective length of query: 3309
effective length of database: 473,870,218
effective search space: 1568036551362
effective search space used: 1568036551362
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)