BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950160.2.1
(846 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG103645.1|BG103645 RHIZ2_39_B02.g1_A003 Rhizome2 (RHIZ2... 615 e-174
gb|BG356820.1|BG356820 OV2_10_D07.g1_A002 Ovary 2 (OV2) Sor... 589 e-166
gb|BI140142.1|BI140142 IP1_49_F05.g1_A002 Immature pannicle... 573 e-161
gb|CW031245.1|CW031245 104_259_10500694_116_30398 Sorghum m... 521 e-146
gb|CW183336.1|CW183336 104_599_11164563_116_36671_012 Sorgh... 232 4e-059
gb|CW031244.1|CW031244 104_259_10500694_114_30397 Sorghum m... 165 8e-039
gb|CW068742.1|CW068742 104_317_10525284_1_30096 Sorghum met... 54 2e-005
>gb|BG103645.1|BG103645 RHIZ2_39_B02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 546
Score = 615 bits (310), Expect = e-174
Identities = 421/454 (92%), Gaps = 3/454 (0%)
Strand = Plus / Minus
Query: 202 ttacatcgatggtcgcaagttatga-tctgtgtagtggatgtagttcaagtagcagccta 260
|||||| |||||||||||||||||| | | ||||||||||||| ||||||||||||||||
Sbjct: 453 ttacattgatggtcgcaagttatgaatgtatgtagtggatgtacttcaagtagcagccta 394
Query: 261 ctgcatagcagtctcagctcatgtgctgtttacctgtggctagagatatgcaattgttgt 320
|||||| ||||||| |||||||||||||||||||||||||| |||||||| || || |||
Sbjct: 393 ctgcatcgcagtcttagctcatgtgctgtttacctgtggctggagatatgtaactgctgt 334
Query: 321 gctccatcaactacagatgctatagacatccactgatgttttgtcagagattgtaacttg 380
||| |||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 333 gcttcatcaactacaggtgctacagacagccactgatgttttgtcagagattgtaacttg 274
Query: 381 agagaaaagccaactgatttaactacaatgtttccgtgtggcagttggagcatgtgcttg 440
|||| |||||| ||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 273 agagcgaagccagttgatttaactacaatgtttacgtgtggcagttggagcatgcgctta 214
Query: 441 gaacatatctaccatgaagcttacaaaaatt-ctaatgttgatacacatcaatcaacgca 499
| |||||||||||| |||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 213 ggacatatctaccacagagcttacaaaaatttctaatgt-gatacacaacaatcaacgca 155
Query: 500 tgaagcactgctgaatcaaagggtgtgaatagtccacatagttatcccaaaagctcttgt 559
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 154 tgaagcactgctgaatcaaaggatgtgaatagtccacatagctatcccaaaagctcttgt 95
Query: 560 acttctccattccaattttgagccatggcttcatatttccattgtagtgcagtactgcac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 acttctccattccaattttgagccatggcttcatatttccattgtagtgcagtactgcac 35
Query: 620 cttccttgatagtagcaagatccacagttgtgta 653
|||||||||||||| || ||||||||||||||||
Sbjct: 34 cttccttgatagtaacaggatccacagttgtgta 1
Score = 95.6 bits (48), Expect = 6e-018
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 109 aaacttgttgtaacacatcaataatttaaaatcaattctacaccatctccattctgtggc 168
|||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 546 aaacttgttgtaacaccttaataatttaaaatcaattctacatcatctccattctgtggt 487
Query: 169 tatgtctcaccc 180
| ||| ||||||
Sbjct: 486 tctgtttcaccc 475
>gb|BG356820.1|BG356820 OV2_10_D07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 466
Score = 589 bits (297), Expect = e-166
Identities = 411/445 (92%), Gaps = 3/445 (0%)
Strand = Plus / Minus
Query: 202 ttacatcgatggtcgcaagttatga-tctgtgtagtggatgtagttcaagtagcagccta 260
|||||| |||||||||||||||||| | | ||||||||||||| ||||||||||||||||
Sbjct: 444 ttacattgatggtcgcaagttatgaatgtatgtagtggatgtacttcaagtagcagccta 385
Query: 261 ctgcatagcagtctcagctcatgtgctgtttacctgtggctagagatatgcaattgttgt 320
|||||| ||||||| |||||||||||||||||||||||||| |||||||| || || | |
Sbjct: 384 ctgcatcgcagtcttagctcatgtgctgtttacctgtggctggagatatgtaactgctct 325
Query: 321 gctccatcaactacagatgctatagacatccactgatgttttgtcagagattgtaacttg 380
||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 324 gcttcatcaactacatgtgctacagacagccactgatgttttgtcagagattgtaacttg 265
Query: 381 agagaaaagccaactgatttaactacaatgtttccgtgtggcagttggagcatgtgcttg 440
|||| |||||| ||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 264 agagcgaagccagttgatttaactacaatgtttacgtgtggcagttggagcatgcgctta 205
Query: 441 gaacatatctaccatgaagcttacaaaaatt-ctaatgttgatacacatcaatcaacgca 499
| |||||||||||| |||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 204 ggacatatctaccacagagcttacaaaaatttctaatgt-gatacacaacaatcaacgca 146
Query: 500 tgaagcactgctgaatcaaagggtgtgaatagtccacatagttatcccaaaagctcttgt 559
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 145 tgaagcactgctgaatcaaaggatgtgaatagtccacatagctatcccaaaagctcttgt 86
Query: 560 acttctccattccaattttgagccatggcttcatatttccattgtagtgcagtactgcac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 acttctccattccaattttgagccatggcttcatatttccattgtagtgcagtactgcac 26
Query: 620 cttccttgatagtagcaagatccac 644
||||||||||||||||| |||||||
Sbjct: 25 cttccttgatagtagcaggatccac 1
>gb|BI140142.1|BI140142 IP1_49_F05.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 513
Score = 573 bits (289), Expect = e-161
Identities = 400/433 (92%), Gaps = 3/433 (0%)
Strand = Plus / Minus
Query: 202 ttacatcgatggtcgcaagttatga-tctgtgtagtggatgtagttcaagtagcagccta 260
|||||| |||||||||||||||||| | | ||||||||||||| ||||||||||||||||
Sbjct: 432 ttacattgatggtcgcaagttatgaatgtatgtagtggatgtacttcaagtagcagccta 373
Query: 261 ctgcatagcagtctcagctcatgtgctgtttacctgtggctagagatatgcaattgttgt 320
|||||| ||||||| |||||||||||||||||||||||||| |||||||| || || | |
Sbjct: 372 ctgcatcgcagtcttagctcatgtgctgtttacctgtggctggagatatgtaactgctct 313
Query: 321 gctccatcaactacagatgctatagacatccactgatgttttgtcagagattgtaacttg 380
||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 312 gcttcatcaactacatgtgctacagacagccactgatgttttgtcagagattgtaacttg 253
Query: 381 agagaaaagccaactgatttaactacaatgtttccgtgtggcagttggagcatgtgcttg 440
|||| |||||| ||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 252 agagcgaagccagttgatttaactacaatgtttacgtgtggcagttggagcatgcgctta 193
Query: 441 gaacatatctaccatgaagcttacaaaaa-ttctaatgttgatacacatcaatcaacgca 499
| |||||||||||| |||||||||||| |||||||| ||||||||| |||||||||||
Sbjct: 192 ggacatatctaccacagagcttacaaaaatttctaatg-tgatacacaacaatcaacgca 134
Query: 500 tgaagcactgctgaatcaaagggtgtgaatagtccacatagttatcccaaaagctcttgt 559
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 133 tgaagcactgctgaatcaaaggatgtgaatagtccacatagctatcccaaaagctcttgt 74
Query: 560 acttctccattccaattttgagccatggcttcatatttccattgtagtgcagtactgcac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 acttctccattccaattttgagccatggcttcatatttccattgtagtgcagtactgcac 14
Query: 620 cttccttgatagt 632
|||||||||||||
Sbjct: 13 cttccttgatagt 1
Score = 79.8 bits (40), Expect = 4e-013
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 121 acacatcaataatttaaaatcaattctacaccatctccattctgtggctatgtctcaccc 180
|||| ||||||||||||||||||||||||| |||||||||||||||| | ||| ||||||
Sbjct: 513 acacctcaataatttaaaatcaattctacatcatctccattctgtggttctgtttcaccc 454
>gb|CW031245.1|CW031245 104_259_10500694_116_30398 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500694, DNA
sequence
Length = 591
Score = 521 bits (263), Expect = e-146
Identities = 432/475 (90%), Gaps = 10/475 (2%)
Strand = Plus / Plus
Query: 202 ttacatcgatggtcgcaagttatga-tctgtgtagtggatgtagttcaagtagcagccta 260
|||||| |||||||||||||||||| | | ||||||||||||| ||||||||||||||||
Sbjct: 118 ttacattgatggtcgcaagttatgaatgtatgtagtggatgtacttcaagtagcagccta 177
Query: 261 ctgcatagcagtctcagctcatgtgctgtttacctgtggctagagatatgcaattgttgt 320
|||||| ||||||| |||||||||||||||||||||||||| |||||||| || || | |
Sbjct: 178 ctgcatcgcagtcttagctcatgtgctgtttacctgtggctggagatatgtaactgctct 237
Query: 321 gctccatcaactacagatgctatagacatccactgatgttttgtcagagattgtaacttg 380
||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 238 gcttcatcaactacatgtgctacagacagccactgatgttttgtcagagattgtaacttg 297
Query: 381 agagaaaagccaactgatttaactacaatgtttccgtgtggcagttggagca-tgtgctt 439
|||| |||||| ||||||||||||||||||| |||||||||||||||||| || ||||
Sbjct: 298 agagcgaagccagttgatttaactacaatgtttacgtgtggcagttggagcattgcgctt 357
Query: 440 ggaacatatctaccatgaagcttacaaaaa-ttctaatgttgatacacatcaatcaacgc 498
| |||||||||||| |||||||||||| |||||||| ||||||||| ||||||||||
Sbjct: 358 aggacatatctaccacagagcttacaaaaatttctaatg-tgatacacaacaatcaacgc 416
Query: 499 atgaagcact-gctgaatcaaagggt-gtgaatagtccacatagttatcccaaaagctct 556
|||||||||| ||||||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct: 417 atgaagcactggctgaatcaaaggatggtgaatagtccacatagctatcccaaaagctct 476
Query: 557 tgtac-ttctccattccaattttgagccatggcttcatatttccattgtagt-gcagtac 614
||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 477 tgtactttctccattccaattttgagccatggcttcatatttccatggtagtggcagtac 536
Query: 615 tgcacc-ttcctt-gatagtagcaagatccacagttgtgtagccaagtcccaaaa 667
||||| |||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 537 ggcacctttccttggatagtagcaggatccacagttgtgtagccaagtcccaaaa 591
Score = 135 bits (68), Expect = 7e-030
Identities = 89/96 (92%)
Strand = Plus / Plus
Query: 85 caataaatatggataggtaacgcaaaacttgttgtaacacatcaataatttaaaatcaat 144
||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 1 caataaatatggatatgtaactcaaaacttgttgtaacacctcaataatttaaaatcaat 60
Query: 145 tctacaccatctccattctgtggctatgtctcaccc 180
|||||| |||||||||||||||| | ||| ||||||
Sbjct: 61 tctacatcatctccattctgtggttctgtttcaccc 96
>gb|CW183336.1|CW183336 104_599_11164563_116_36671_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164563, DNA
sequence
Length = 706
Score = 232 bits (117), Expect = 4e-059
Identities = 153/165 (92%)
Strand = Plus / Minus
Query: 16 gactttacttctcaacatgtataaataaacaaacagaaaagggcttagctgccataagtc 75
||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||
Sbjct: 358 gactttacttctcaacatgtataaataaataaacagaaaaaggcttagctgttgtaagtc 299
Query: 76 tttaacatccaataaatatggataggtaacgcaaaacttgttgtaacacatcaataattt 135
|||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||
Sbjct: 298 tttaacatccaataaatatggatatgtaactcaaaacttgttgtaacacctcaataattt 239
Query: 136 aaaatcaattctacaccatctccattctgtggctatgtctcaccc 180
||||||||||||||| |||||||||||||||| | ||| ||||||
Sbjct: 238 aaaatcaattctacatcatctccattctgtggttctgtttcaccc 194
Score = 198 bits (100), Expect = 6e-049
Identities = 155/172 (90%), Gaps = 1/172 (0%)
Strand = Plus / Minus
Query: 202 ttacatcgatggtcgcaagttatga-tctgtgtagtggatgtagttcaagtagcagccta 260
|||||| |||||||||||||||||| | | ||||||||||||| ||||||||||||||||
Sbjct: 172 ttacattgatggtcgcaagttatgaatgtatgtagtggatgtacttcaagtagcagccta 113
Query: 261 ctgcatagcagtctcagctcatgtgctgtttacctgtggctagagatatgcaattgttgt 320
|||||| ||||||| |||||||||||||||||||||||||| |||||||| || || | |
Sbjct: 112 ctgcatcgcagtcttagctcatgtgctgtttacctgtggctggagatatgtaactgctct 53
Query: 321 gctccatcaactacagatgctatagacatccactgatgttttgtcagagatt 372
||| ||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 52 gcttcatcaactacatgtgctacagacagccactgatgttttgtcagagatt 1
>gb|CW031244.1|CW031244 104_259_10500694_114_30397 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500694, DNA
sequence
Length = 776
Score = 165 bits (83), Expect = 8e-039
Identities = 102/107 (95%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 741 ccatagagtatgatcaca-ttgcgctcctgccaataatgatatatgcctgtcacattctt 799
|||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ccatagggtatgatcagaattgcgctcctgccaataatgatatatgcctgtcacattctt 717
Query: 800 gttcctccattcaaccagatcaagcacgttcataccaaatgcccagc 846
|||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 716 gttcctccattcgaccagatcaagcacattcataccaaatgcccagc 670
>gb|CW068742.1|CW068742 104_317_10525284_1_30096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10525284, DNA
sequence
Length = 432
Score = 54.0 bits (27), Expect = 2e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 816 agatcaagcacgttcataccaaatgcccagc 846
||||||||||| |||||||||||||||||||
Sbjct: 1 agatcaagcacattcataccaaatgcccagc 31
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 224,469
Number of Sequences: 832831
Number of extensions: 224469
Number of successful extensions: 60118
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60090
Number of HSP's gapped (non-prelim): 14
length of query: 846
length of database: 491,359,669
effective HSP length: 20
effective length of query: 826
effective length of database: 474,703,049
effective search space: 392104718474
effective search space used: 392104718474
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)