BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950089.2.3
(824 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD226397.1|CD226397 CCC1_45_B08.g1_A007 Callus culture/c... 624 e-177
gb|CN127375.1|CN127375 RHOH1_22_D12.g3_A002 Acid- and alkal... 624 e-177
gb|CD431545.1|CD431545 ETH1_9_C03.g1_A002 Ethylene-treated ... 595 e-168
gb|AW678479.1|AW678479 WS1_16_E03.b1_A002 Water-stressed 1 ... 529 e-148
gb|BM324869.1|BM324869 PIC1_36_H02.b1_A002 Pathogen-infecte... 480 e-133
gb|CD226376.1|CD226376 CCC1_45_B08.b1_A007 Callus culture/c... 375 e-102
gb|CW165736.1|CW165736 104_574_11152669_148_36480_059 Sorgh... 270 2e-070
gb|CD431488.1|CD431488 ETH1_9_C03.b1_A002 Ethylene-treated ... 204 9e-051
gb|AW678587.1|AW678587 WS1_16_E03.g1_A002 Water-stressed 1 ... 196 2e-048
gb|CW165735.1|CW165735 104_574_11152669_116_36484_059 Sorgh... 149 5e-034
gb|CF073329.1|CF073329 FE1_22_C10.g1_A002 Iron-deficient se... 107 2e-021
gb|BM329363.1|BM329363 PIC1_36_H02.g1_A002 Pathogen-infecte... 94 2e-017
gb|BG817396.1|BG817396 EM1_75_D03.b1_A002 Embryo 1 (EM1) So... 72 9e-011
gb|BI075210.1|BI075210 IP1_17_E01.b1_A002 Immature pannicle... 72 9e-011
gb|CN126731.1|CN126731 RHOH1_18_G11.g1_A002 Acid- and alkal... 66 6e-009
gb|CW060149.1|CW060149 104_303_10519704_1_30042 Sorghum met... 44 0.020
gb|CW162368.1|CW162368 104_569_11150905_148_36439_005 Sorgh... 44 0.020
gb|CW167929.1|CW167929 104_577_11153869_148_36492_057 Sorgh... 44 0.020
gb|CW451391.1|CW451391 fsbb001f191h03f0 Sorghum methylation... 44 0.020
gb|CW451392.1|CW451392 fsbb001f191h03k0 Sorghum methylation... 44 0.020
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 42 0.080
gb|CL193339.1|CL193339 104_416_10940862_116_32272_017 Sorgh... 40 0.32
gb|CW048081.1|CW048081 104_286_10513080_114_30214 Sorghum m... 40 0.32
gb|CW189368.1|CW189368 104_610_11173926_148_37099_021 Sorgh... 40 0.32
gb|CW223489.1|CW223489 104_659_11202943_148_37190_026 Sorgh... 40 0.32
gb|CW267338.1|CW267338 104_737_11400677_148_35293_021 Sorgh... 40 0.32
gb|CW366119.1|CW366119 fsbb001f038p12f0 Sorghum methylation... 40 0.32
gb|CW473388.1|CW473388 fsbb001f228l19f0 Sorghum methylation... 40 0.32
gb|CW488973.1|CW488973 fsbb001f265k08f0 Sorghum methylation... 40 0.32
gb|CW502545.1|CW502545 fsbb001f298p03f0 Sorghum methylation... 40 0.32
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 40 0.32
gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library fro... 40 0.32
gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-respon... 40 0.32
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 40 0.32
gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.32
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 40 0.32
>gb|CD226397.1|CD226397 CCC1_45_B08.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_45_B08_A007 5', mRNA sequence
Length = 660
Score = 624 bits (315), Expect = e-177
Identities = 419/462 (90%)
Strand = Plus / Minus
Query: 122 gtagacttgctgatgagctnntcaaatgcnnnnngtnngttttgttcaatatatctctct 181
||||||||||||||||||| |||||||| || ||||| |||||||||||||||
Sbjct: 526 gtagacttgctgatgagcttctcaaatgcttccggtccattttgctcaatatatctctct 467
Query: 182 gcagctnnngnaacatcatcagatttacctagcttctcatttcttnnaatataccatatg 241
|||||| |||||||||||||||||||||||||||||| ||| || ||||||||||
Sbjct: 466 gcagctgacagaacatcatcagatttacctagcttctcattccttggaacataccatatg 407
Query: 242 ttnactatttggcggttcacaaacattggccgnnnaaaatggtcgtaaacataggcagna 301
|| ||||||||||||||||||||| ||||||| |||||||||||||||||| |||| |
Sbjct: 406 ttcactatttggcggttcacaaacgttggccgcacaaaatggtcgtaaacataagcagca 347
Query: 302 ccattgaaccaaggcaagaccaannagcagttaaagaacagctttgcatacgaccaaaat 361
|||||||||||||| |||||||| ||||||||||||||| ||||||||| |||||||||
Sbjct: 346 ccattgaaccaaggtaagaccaaccagcagttaaagaacaactttgcatatgaccaaaat 287
Query: 362 ggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaatgagtnnnac 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 286 ggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaatgagtacaac 227
Query: 422 acccagtaagtgagccactgctgatcatctacaggattttttgtctctatagctctaaca 481
||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 226 acccagtaagtgagccactgctggtcatctacaggatttttggtctctattgctctaaca 167
Query: 482 gaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatcgaagttattg 541
||||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||
Sbjct: 166 gaagcatatagaggatatgcaagtgatatgagtggccctgctaggacatcgaagttgtta 107
Query: 542 gccagcaccttgaggaaagatccggaccccatcttgctccct 583
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 gccagcaccttgaggaaagatccggaccccatcttgctccct 65
>gb|CN127375.1|CN127375 RHOH1_22_D12.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_D12_A002 5', mRNA sequence
Length = 760
Score = 624 bits (315), Expect = e-177
Identities = 419/462 (90%)
Strand = Plus / Minus
Query: 122 gtagacttgctgatgagctnntcaaatgcnnnnngtnngttttgttcaatatatctctct 181
||||||||||||||||||| |||||||| || ||||| |||||||||||||||
Sbjct: 518 gtagacttgctgatgagcttctcaaatgcttccggtccattttgctcaatatatctctct 459
Query: 182 gcagctnnngnaacatcatcagatttacctagcttctcatttcttnnaatataccatatg 241
|||||| |||||||||||||||||||||||||||||| ||| || ||||||||||
Sbjct: 458 gcagctgacagaacatcatcagatttacctagcttctcattccttggaacataccatatg 399
Query: 242 ttnactatttggcggttcacaaacattggccgnnnaaaatggtcgtaaacataggcagna 301
|| ||||||||||||||||||||| ||||||| |||||||||||||||||| |||| |
Sbjct: 398 ttcactatttggcggttcacaaacgttggccgcacaaaatggtcgtaaacataagcagca 339
Query: 302 ccattgaaccaaggcaagaccaannagcagttaaagaacagctttgcatacgaccaaaat 361
|||||||||||||| |||||||| ||||||||||||||| ||||||||| |||||||||
Sbjct: 338 ccattgaaccaaggtaagaccaaccagcagttaaagaacaactttgcatatgaccaaaat 279
Query: 362 ggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaatgagtnnnac 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 278 ggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaatgagtacaac 219
Query: 422 acccagtaagtgagccactgctgatcatctacaggattttttgtctctatagctctaaca 481
||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 218 acccagtaagtgagccactgctggtcatctacaggatttttggtctctattgctctaaca 159
Query: 482 gaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatcgaagttattg 541
||||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||
Sbjct: 158 gaagcatatagaggatatgcaagtgatatgagtggccctgctaggacatcgaagttgtta 99
Query: 542 gccagcaccttgaggaaagatccggaccccatcttgctccct 583
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 gccagcaccttgaggaaagatccggaccccatcttgctccct 57
>gb|CD431545.1|CD431545 ETH1_9_C03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_9_C03_A002 5', mRNA sequence
Length = 580
Score = 595 bits (300), Expect = e-168
Identities = 388/423 (91%)
Strand = Plus / Minus
Query: 161 ttttgttcaatatatctctctgcagctnnngnaacatcatcagatttacctagcttctca 220
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 563 ttttgctcaatatatctctctgcagctgacagaacatcatcagatttacctagcttctca 504
Query: 221 tttcttnnaatataccatatgttnactatttggcggttcacaaacattggccgnnnaaaa 280
|| ||| || |||||||||||| |||||| |||||||||||||| ||||||| ||||
Sbjct: 503 ttccttggaacataccatatgttcactattnggcggttcacaaacgttggccgcacaaaa 444
Query: 281 tggtcgtaaacataggcagnaccattgaaccaaggcaagaccaannagcagttaaagaac 340
|||||||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||
Sbjct: 443 tggtcgtaaacataagcagcaccattgaaccaaggtaagaccaaccagcagttaaagaac 384
Query: 341 agctttgcatacgaccaaaatggaagccactcgataattggagcaaaagttagctcaaac 400
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aactttgcatatgaccaaaatggaagccactcgataattggagcaaaagttagctcaaac 324
Query: 401 aaagtgataaatgagtnnnacacccagtaagtgagccactgctgatcatctacaggattt 460
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 323 aaagtgataaatgagtacaacacccagtaagtgagccactgctggtcatctacaggattt 264
Query: 461 tttgtctctatagctctaacagaagcatatagaggataagcaagtgatatgagtggcccg 520
|| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 263 ttggtctctattgctctaacagaagcatatagaggatatgcaagtgatatgagtggccct 204
Query: 521 gcaaggacatcgaagttattggccagcaccttgaggaaagatccggaccccatcttgctc 580
|| |||||||||||||| || |||||||||||||||||||||||||||||||||| ||||
Sbjct: 203 gctaggacatcgaagttgttagccagcaccttgaggaaagatccggaccccatctcgctc 144
Query: 581 cct 583
|||
Sbjct: 143 cct 141
>gb|AW678479.1|AW678479 WS1_16_E03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 451
Score = 529 bits (267), Expect = e-148
Identities = 359/398 (90%)
Strand = Plus / Minus
Query: 122 gtagacttgctgatgagctnntcaaatgcnnnnngtnngttttgttcaatatatctctct 181
||||||||||||||||||| |||||||| || ||||| |||||||||||||||
Sbjct: 408 gtagacttgctgatgagcttctcaaatgcttccggtccattttgctcaatatatctctct 349
Query: 182 gcagctnnngnaacatcatcagatttacctagcttctcatttcttnnaatataccatatg 241
|||||| |||||||||||||||||||||||||||||| ||| || ||||||||||
Sbjct: 348 gcagctgacagaacatcatcagatttacctagcttctcattccttggaacataccatatg 289
Query: 242 ttnactatttggcggttcacaaacattggccgnnnaaaatggtcgtaaacataggcagna 301
|| ||||||||||||||||||||| ||||||| |||||||||||||||||| |||| |
Sbjct: 288 ttcactatttggcggttcacaaacgttggccgcacaaaatggtcgtaaacataagcagca 229
Query: 302 ccattgaaccaaggcaagaccaannagcagttaaagaacagctttgcatacgaccaaaat 361
|||||||||||||| |||||||| ||||||||||||||| ||||||||| |||||||||
Sbjct: 228 ccattgaaccaaggtaagaccaaccagcagttaaagaacaactttgcatatgaccaaaat 169
Query: 362 ggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaatgagtnnnac 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 168 ggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaatgagtacaac 109
Query: 422 acccagtaagtgagccactgctgatcatctacaggattttttgtctctatagctctaaca 481
||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 108 acccagtaagtgagccactgctggtcatctacaggatttttggtctctattgctctaaca 49
Query: 482 gaagcatatagaggataagcaagtgatatgagtggccc 519
||||||||||||||||| ||||||||||||||||||||
Sbjct: 48 gaagcatatagaggatatgcaagtgatatgagtggccc 11
>gb|BM324869.1|BM324869 PIC1_36_H02.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 456
Score = 480 bits (242), Expect = e-133
Identities = 322/352 (91%)
Strand = Plus / Minus
Query: 232 ataccatatgttnactatttggcggttcacaaacattggccgnnnaaaatggtcgtaaac 291
|||| ||||||| |||||||||||||||||||| ||||||| |||||| ||||||||
Sbjct: 456 atacgatatgttctctatttggcggttcacaaacgttggccgcacaaaatgctcgtaaac 397
Query: 292 ataggcagnaccattgaaccaaggcaagaccaannagcagttaaagaacagctttgcata 351
||| |||| |||||||| |||||| ||| |||| ||||||||||||||| |||||||||
Sbjct: 396 ataagcagcaccattgatccaaggtaaggccaaccagcagttaaagaacaactttgcata 337
Query: 352 cgaccaaaatggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaa 411
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtccaaaatggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaa 277
Query: 412 tgagtnnnacacccagtaagtgagccactgctgatcatctacaggattttttgtctctat 471
||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 276 tgagtacaacacccagtaagtgagccactgctggtcatctacaggatttttggtctctat 217
Query: 472 agctctaacagaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatc 531
|||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct: 216 tgctctaacagaagcatatagaggatatgcaagtgatatgagtggccgtgctaggacatc 157
Query: 532 gaagttattggccagcaccttgaggaaagatccggaccccatcttgctccct 583
|||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gaagttgttagccagcaccttgaggaaagatccggaccccatcttgctccct 105
>gb|CD226376.1|CD226376 CCC1_45_B08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_45_B08_A007 3', mRNA sequence
Length = 671
Score = 375 bits (189), Expect = e-102
Identities = 263/295 (89%)
Strand = Plus / Minus
Query: 122 gtagacttgctgatgagctnntcaaatgcnnnnngtnngttttgttcaatatatctctct 181
||||||||||||||||||| |||||||| || ||||| |||||||||||||||
Sbjct: 296 gtagacttgctgatgagcttctcaaatgcttccggtccattttgctcaatatatctctct 237
Query: 182 gcagctnnngnaacatcatcagatttacctagcttctcatttcttnnaatataccatatg 241
|||||| |||||||||||||||||||||||||||||| ||| || ||||||||||
Sbjct: 236 gcagctgacagaacatcatcagatttacctagcttctcattccttggaacataccatatg 177
Query: 242 ttnactatttggcggttcacaaacattggccgnnnaaaatggtcgtaaacataggcagna 301
|| ||||||||||||||||||||| ||||||| |||||||||||||||||| |||| |
Sbjct: 176 ttcactatttggcggttcacaaacgttggccgcacaaaatggtcgtaaacataagcagca 117
Query: 302 ccattgaaccaaggcaagaccaannagcagttaaagaacagctttgcatacgaccaaaat 361
|||||||||||||| |||||||| ||||||||||||||| ||||||||| |||||||||
Sbjct: 116 ccattgaaccaaggtaagaccaaccagcagttaaagaacaactttgcatatgaccaaaat 57
Query: 362 ggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaatgagt 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 ggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaatgagt 2
>gb|CW165736.1|CW165736 104_574_11152669_148_36480_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152669, DNA
sequence
Length = 690
Score = 270 bits (136), Expect = 2e-070
Identities = 210/242 (86%)
Strand = Plus / Minus
Query: 127 cttgctgatgagctnntcaaatgcnnnnngtnngttttgttcaatatatctctctgcagc 186
|||||||||||||| |||||||| || ||||| ||||||||||||||||||||
Sbjct: 599 cttgctgatgagcttctcaaatgcttccggtccattttgctcaatatatctctctgcagc 540
Query: 187 tnnngnaacatcatcagatttacctagcttctcatttcttnnaatataccatatgttnac 246
| |||||||||||||||||||||||||||||| ||| || |||||||||||| ||
Sbjct: 539 tgacagaacatcatcagatttacctagcttctcattccttggaacataccatatgttcac 480
Query: 247 tatttggcggttcacaaacattggccgnnnaaaatggtcgtaaacataggcagnaccatt 306
||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||
Sbjct: 479 tatttggcggttcacaaacgttggccgcacaaaatggtcgtaaacataagcagcaccatt 420
Query: 307 gaaccaaggcaagaccaannagcagttaaagaacagctttgcatacgaccaaaatggaag 366
||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 419 gaaccaaggtaagaccaaccagcagttaaagaacaactttgcatatgaccaaaatggaag 360
Query: 367 cc 368
||
Sbjct: 359 cc 358
Score = 204 bits (103), Expect = 9e-051
Identities = 118/124 (95%)
Strand = Plus / Minus
Query: 367 ccactcgataattggagcaaaagttagctcaaacaaagtgataaatgagtnnnacaccca 426
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 227 ccactcgataattggagcaaaagttagctcaaacaaagtgataaatgagtacaacaccca 168
Query: 427 gtaagtgagccactgctgatcatctacaggattttttgtctctatagctctaacagaagc 486
|||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 167 gtaagtgagccactgctggtcatctacaggatttttggtctctattgctctaacagaagc 108
Query: 487 atat 490
||||
Sbjct: 107 atat 104
>gb|CD431488.1|CD431488 ETH1_9_C03.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_9_C03_A002 3', mRNA sequence
Length = 560
Score = 204 bits (103), Expect = 9e-051
Identities = 164/191 (85%)
Strand = Plus / Minus
Query: 122 gtagacttgctgatgagctnntcaaatgcnnnnngtnngttttgttcaatatatctctct 181
||||||||||||||||||| |||||||| || ||||| |||||||||||||||
Sbjct: 191 gtagacttgctgatgagcttctcaaatgcttccggtccattttgctcaatatatctctct 132
Query: 182 gcagctnnngnaacatcatcagatttacctagcttctcatttcttnnaatataccatatg 241
|||||| |||||||||||||||||||||||||||||| ||| || ||||||||||
Sbjct: 131 gcagctgacagaacatcatcagatttacctagcttctcattccttggaacataccatatg 72
Query: 242 ttnactatttggcggttcacaaacattggccgnnnaaaatggtcgtaaacataggcagna 301
|| ||||||||||||||||||||| ||||||| |||||||||||||||||| |||| |
Sbjct: 71 ttcactatttggcggttcacaaacgttggccgcacaaaatggtcgtaaacataagcagca 12
Query: 302 ccattgaacca 312
|||||||||||
Sbjct: 11 ccattgaacca 1
>gb|AW678587.1|AW678587 WS1_16_E03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 557
Score = 196 bits (99), Expect = 2e-048
Identities = 160/187 (85%)
Strand = Plus / Minus
Query: 122 gtagacttgctgatgagctnntcaaatgcnnnnngtnngttttgttcaatatatctctct 181
||||||||||||||||||| |||||||| || ||||| |||||||||||||||
Sbjct: 187 gtagacttgctgatgagcttctcaaatgcttccggtccattttgctcaatatatctctct 128
Query: 182 gcagctnnngnaacatcatcagatttacctagcttctcatttcttnnaatataccatatg 241
|||||| |||||||||||||||||||||||||||||| ||| || ||||||||||
Sbjct: 127 gcagctgacagaacatcatcagatttacctagcttctcattccttggaacataccatatg 68
Query: 242 ttnactatttggcggttcacaaacattggccgnnnaaaatggtcgtaaacataggcagna 301
|| ||||||||||||||||||||| ||||||| |||||||||||||||||| |||| |
Sbjct: 67 ttcactatttggcggttcacaaacgttggccgcacaaaatggtcgtaaacataagcagca 8
Query: 302 ccattga 308
|||||||
Sbjct: 7 ccattga 1
>gb|CW165735.1|CW165735 104_574_11152669_116_36484_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152669, DNA
sequence
Length = 678
Score = 149 bits (75), Expect = 5e-034
Identities = 125/147 (85%)
Strand = Plus / Plus
Query: 127 cttgctgatgagctnntcaaatgcnnnnngtnngttttgttcaatatatctctctgcagc 186
|||||||||||||| |||||||| || ||||| ||||||||||||||||||||
Sbjct: 526 cttgctgatgagcttctcaaatgcttccggtccattttgctcaatatatctctctgcagc 585
Query: 187 tnnngnaacatcatcagatttacctagcttctcatttcttnnaatataccatatgttnac 246
| |||||||||||||||||||||||||||||| ||| || |||||||||||| ||
Sbjct: 586 tgacagaacatcatcagatttacctagcttctcattccttggaacataccatatgttcac 645
Query: 247 tatttggcggttcacaaacattggccg 273
||||||||||||||||||| |||||||
Sbjct: 646 tatttggcggttcacaaacgttggccg 672
>gb|CF073329.1|CF073329 FE1_22_C10.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_22_C10_A002 5', mRNA sequence
Length = 605
Score = 107 bits (54), Expect = 2e-021
Identities = 99/119 (83%)
Strand = Plus / Plus
Query: 122 gtagacttgctgatgagctnntcaaatgcnnnnngtnngttttgttcaatatatctctct 181
||||||||||||||||||| |||||||| || ||||| |||||||||||||||
Sbjct: 487 gtagacttgctgatgagcttctcaaatgcttccggtccattttgctcaatatatctctct 546
Query: 182 gcagctnnngnaacatcatcagatttacctagcttctcatttcttnnaatataccatat 240
|||||| |||||||||||||||||||||||||||||| ||| || |||||||||
Sbjct: 547 gcagctgacagaacatcatcagatttacctagcttctcattccttggaacataccatat 605
>gb|BM329363.1|BM329363 PIC1_36_H02.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 498
Score = 93.7 bits (47), Expect = 2e-017
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 122 gtagacttgctgatgagctnntcaaatgcnnnnngtnngttttgttcaatatatctctct 181
|||||||||||||||| || |||||||| || ||||| |||||||||||||||
Sbjct: 116 gtagacttgctgatgaacttctcaaatgcttccggtccattttgctcaatatatctctct 57
Query: 182 gcagctnnngnaacatcatcagatttacctagcttctcatttcttnnaatatacca 237
|||||| |||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 56 gcagctgacagaacatcatcagatttacctagcttctcattccttggaacatacca 1
>gb|BG817396.1|BG817396 EM1_75_D03.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 504
Score = 71.9 bits (36), Expect = 9e-011
Identities = 168/213 (78%)
Strand = Plus / Minus
Query: 362 ggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaatgagtnnnac 421
|||||||||| ||||||| ||||| || || |||||||| || || |||||||
Sbjct: 411 ggaagccactgaataattgatgcaaatgtgagttcaaacaatgttattaatgagtacagg 352
Query: 422 acccagtaagtgagccactgctgatcatctacaggattttttgtctctatagctctaaca 481
||||| || |||||||| || |||||||| |||||| ||| |||||||| || ||||
Sbjct: 351 acccaatatgtgagccattgttgatcatccacaggagatttggtctctattgccttaacg 292
Query: 482 gaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatcgaagttattg 541
|| ||||| | ||||||||| |||| | | ||||| |||||||| |||||||| |||
Sbjct: 291 gaggcatacaaaggataagccagtgccaccaaaggccctgcaaggacgtcgaagttgttg 232
Query: 542 gccagcaccttgaggaaagatccggaccccatc 574
|| | |||||||| ||||||||||| ||||||
Sbjct: 231 gcgacgaccttgagcaaagatccggagcccatc 199
>gb|BI075210.1|BI075210 IP1_17_E01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 453
Score = 71.9 bits (36), Expect = 9e-011
Identities = 168/213 (78%)
Strand = Plus / Minus
Query: 362 ggaagccactcgataattggagcaaaagttagctcaaacaaagtgataaatgagtnnnac 421
|||||||||| ||||||| ||||| || || |||||||| || || |||||||
Sbjct: 399 ggaagccactgaataattgatgcaaatgtgagttcaaacaatgttattaatgagtacagg 340
Query: 422 acccagtaagtgagccactgctgatcatctacaggattttttgtctctatagctctaaca 481
||||| || |||||||| || |||||||| |||||| ||| |||||||| || ||||
Sbjct: 339 acccaatatgtgagccattgttgatcatccacaggagatttggtctctattgccttaacg 280
Query: 482 gaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatcgaagttattg 541
|| ||||| | ||||||||| |||| | | ||||| |||||||| |||||||| |||
Sbjct: 279 gaggcatacaaaggataagccagtgccaccaaaggccctgcaaggacgtcgaagttgttg 220
Query: 542 gccagcaccttgaggaaagatccggaccccatc 574
|| | |||||||| ||||||||||| ||||||
Sbjct: 219 gcgacgaccttgagcaaagatccggagcccatc 187
>gb|CN126731.1|CN126731 RHOH1_18_G11.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_G11_A002 5', mRNA sequence
Length = 778
Score = 65.9 bits (33), Expect = 6e-009
Identities = 123/153 (80%)
Strand = Plus / Minus
Query: 422 acccagtaagtgagccactgctgatcatctacaggattttttgtctctatagctctaaca 481
||||| || |||||||| || |||||||| |||||| ||| |||||||| || ||||
Sbjct: 361 acccaatatgtgagccattgttgatcatccacaggagatttggtctctattgccttaacg 302
Query: 482 gaagcatatagaggataagcaagtgatatgagtggcccggcaaggacatcgaagttattg 541
|| ||||| | ||||||||| |||| | | ||||| |||||||| |||||||| |||
Sbjct: 301 gaggcatacaaaggataagccagtgccaccaaaggccctgcaaggacgtcgaagttgttg 242
Query: 542 gccagcaccttgaggaaagatccggaccccatc 574
|| | |||||||| ||||||||||| ||||||
Sbjct: 241 gcgacgaccttgagcaaagatccggagcccatc 209
>gb|CW060149.1|CW060149 104_303_10519704_1_30042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519704, DNA
sequence
Length = 643
Score = 44.1 bits (22), Expect = 0.020
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 422 acccagtaagtgagccactgctgatc 447
|||||||| |||||||||||||||||
Sbjct: 460 acccagtaggtgagccactgctgatc 435
>gb|CW162368.1|CW162368 104_569_11150905_148_36439_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150905, DNA
sequence
Length = 723
Score = 44.1 bits (22), Expect = 0.020
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 422 acccagtaagtgagccactgctgatc 447
|||||||| |||||||||||||||||
Sbjct: 693 acccagtaggtgagccactgctgatc 718
>gb|CW167929.1|CW167929 104_577_11153869_148_36492_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153869, DNA
sequence
Length = 704
Score = 44.1 bits (22), Expect = 0.020
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 422 acccagtaagtgagccactgctgatc 447
|||||||| |||||||||||||||||
Sbjct: 49 acccagtaggtgagccactgctgatc 74
>gb|CW451391.1|CW451391 fsbb001f191h03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191h03, DNA
sequence
Length = 591
Score = 44.1 bits (22), Expect = 0.020
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 422 acccagtaagtgagccactgctgatc 447
|||||||| |||||||||||||||||
Sbjct: 289 acccagtaggtgagccactgctgatc 314
>gb|CW451392.1|CW451392 fsbb001f191h03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191h03, DNA
sequence
Length = 696
Score = 44.1 bits (22), Expect = 0.020
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 422 acccagtaagtgagccactgctgatc 447
|||||||| |||||||||||||||||
Sbjct: 581 acccagtaggtgagccactgctgatc 556
>gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 223
Score = 42.1 bits (21), Expect = 0.080
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 804 cgtacctgcccgggcggccgc 824
|||||||||||||||||||||
Sbjct: 99 cgtacctgcccgggcggccgc 119
>gb|CL193339.1|CL193339 104_416_10940862_116_32272_017 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10940862, DNA
sequence
Length = 588
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 732 gcgtggaggcgtggagctcg 751
||||||||||||||||||||
Sbjct: 41 gcgtggaggcgtggagctcg 22
>gb|CW048081.1|CW048081 104_286_10513080_114_30214 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513080, DNA
sequence
Length = 628
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 732 gcgtggaggcgtggagctcg 751
||||||||||||||||||||
Sbjct: 212 gcgtggaggcgtggagctcg 231
>gb|CW189368.1|CW189368 104_610_11173926_148_37099_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173926, DNA
sequence
Length = 695
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 732 gcgtggaggcgtggagctcg 751
||||||||||||||||||||
Sbjct: 368 gcgtggaggcgtggagctcg 387
>gb|CW223489.1|CW223489 104_659_11202943_148_37190_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202943, DNA
sequence
Length = 625
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 548 accttgaggaaagatccgga 567
||||||||||||||||||||
Sbjct: 144 accttgaggaaagatccgga 163
>gb|CW267338.1|CW267338 104_737_11400677_148_35293_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11400677, DNA
sequence
Length = 547
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 732 gcgtggaggcgtggagctcg 751
||||||||||||||||||||
Sbjct: 366 gcgtggaggcgtggagctcg 347
>gb|CW366119.1|CW366119 fsbb001f038p12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f038p12, DNA
sequence
Length = 603
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 548 accttgaggaaagatccgga 567
||||||||||||||||||||
Sbjct: 88 accttgaggaaagatccgga 107
>gb|CW473388.1|CW473388 fsbb001f228l19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f228l19, DNA
sequence
Length = 600
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 548 accttgaggaaagatccgga 567
||||||||||||||||||||
Sbjct: 436 accttgaggaaagatccgga 417
>gb|CW488973.1|CW488973 fsbb001f265k08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f265k08, DNA
sequence
Length = 732
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 548 accttgaggaaagatccgga 567
||||||||||||||||||||
Sbjct: 642 accttgaggaaagatccgga 623
>gb|CW502545.1|CW502545 fsbb001f298p03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f298p03, DNA
sequence
Length = 618
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 732 gcgtggaggcgtggagctcg 751
||||||||||||||||||||
Sbjct: 92 gcgtggaggcgtggagctcg 111
>gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone THAU2 similar to
Thaumatin-like protein, mRNA sequence
Length = 747
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 223 gtacctgcccgggcggccgc 204
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 192 gtacctgcccgggcggccgc 211
>gb|CF675675.1|CF675675 RUBISCO Subtractive cDNA library from sorghum infested by greenbug
aphids Sorghum bicolor cDNA clone RUBISCO similar to
Ribulose 1,5-biphosphate carboxylase, mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 244 gtacctgcccgggcggccgc 225
>gb|DR831561.1|DR831561 MT14 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 112
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 21 gtacctgcccgggcggccgc 2
>gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 282
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 51 gtacctgcccgggcggccgc 32
>gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 234
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 65 gtacctgcccgggcggccgc 84
>gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 172
Score = 40.1 bits (20), Expect = 0.32
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 805 gtacctgcccgggcggccgc 824
||||||||||||||||||||
Sbjct: 2 gtacctgcccgggcggccgc 21
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 142,087
Number of Sequences: 832831
Number of extensions: 142087
Number of successful extensions: 39875
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39816
Number of HSP's gapped (non-prelim): 49
length of query: 824
length of database: 491,359,669
effective HSP length: 20
effective length of query: 804
effective length of database: 474,703,049
effective search space: 381661251396
effective search space used: 381661251396
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)