BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950089.2.2
(1044 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN127375.1|CN127375 RHOH1_22_D12.g3_A002 Acid- and alkal... 932 0.0
gb|CD226397.1|CD226397 CCC1_45_B08.g1_A007 Callus culture/c... 924 0.0
gb|AW678479.1|AW678479 WS1_16_E03.b1_A002 Water-stressed 1 ... 739 0.0
gb|CD226376.1|CD226376 CCC1_45_B08.b1_A007 Callus culture/c... 729 0.0
gb|CD431545.1|CD431545 ETH1_9_C03.g1_A002 Ethylene-treated ... 726 0.0
gb|BM324869.1|BM324869 PIC1_36_H02.b1_A002 Pathogen-infecte... 549 e-154
gb|CD431488.1|CD431488 ETH1_9_C03.b1_A002 Ethylene-treated ... 537 e-151
gb|AW678587.1|AW678587 WS1_16_E03.g1_A002 Water-stressed 1 ... 529 e-148
gb|CF073329.1|CF073329 FE1_22_C10.g1_A002 Iron-deficient se... 410 e-112
gb|CW165736.1|CW165736 104_574_11152669_148_36480_059 Sorgh... 408 e-112
gb|BM329363.1|BM329363 PIC1_36_H02.g1_A002 Pathogen-infecte... 333 2e-089
gb|CW165735.1|CW165735 104_574_11152669_116_36484_059 Sorgh... 256 4e-066
gb|CF769332.1|CF769332 DSBF1_1_B03.b1_A010 Drought-stressed... 165 1e-038
gb|CF769417.1|CF769417 DSBF1_1_B03.g1_A010 Drought-stressed... 165 1e-038
gb|CF770196.1|CF770196 DSBF1_6_F05.b1_A010 Drought-stressed... 165 1e-038
gb|CF770272.1|CF770272 DSBF1_6_F05.g1_A010 Drought-stressed... 165 1e-038
gb|CW486008.1|CW486008 fsbb001f249a14f0 Sorghum methylation... 155 1e-035
gb|BG817396.1|BG817396 EM1_75_D03.b1_A002 Embryo 1 (EM1) So... 98 2e-018
gb|BI075210.1|BI075210 IP1_17_E01.b1_A002 Immature pannicle... 98 2e-018
gb|BF587278.1|BF587278 FM1_34_D12.b1_A003 Floral-Induced Me... 82 1e-013
gb|CN126731.1|CN126731 RHOH1_18_G11.g1_A002 Acid- and alkal... 82 1e-013
gb|BZ338345.1|BZ338345 ia94f11.g1 WGS-SbicolorF (JM107 adap... 58 2e-006
gb|CW281816.1|CW281816 104_757_11408379_148_35459_006 Sorgh... 54 3e-005
gb|CW060149.1|CW060149 104_303_10519704_1_30042 Sorghum met... 46 0.007
gb|CW162368.1|CW162368 104_569_11150905_148_36439_005 Sorgh... 46 0.007
gb|CW167929.1|CW167929 104_577_11153869_148_36492_057 Sorgh... 46 0.007
gb|CW451391.1|CW451391 fsbb001f191h03f0 Sorghum methylation... 46 0.007
gb|CW451392.1|CW451392 fsbb001f191h03k0 Sorghum methylation... 46 0.007
gb|CD213563.1|CD213563 HS1_41_D11.g1_A012 Heat-shocked seed... 42 0.10
gb|CW223489.1|CW223489 104_659_11202943_148_37190_026 Sorgh... 40 0.40
gb|CW366119.1|CW366119 fsbb001f038p12f0 Sorghum methylation... 40 0.40
gb|CW473388.1|CW473388 fsbb001f228l19f0 Sorghum methylation... 40 0.40
gb|CW488973.1|CW488973 fsbb001f265k08f0 Sorghum methylation... 40 0.40
gb|BE357690.1|BE357690 DG1_21_F02.g1_A002 Dark Grown 1 (DG1... 40 0.40
>gb|CN127375.1|CN127375 RHOH1_22_D12.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_D12_A002 5', mRNA sequence
Length = 760
Score = 932 bits (470), Expect = 0.0
Identities = 640/695 (92%), Gaps = 10/695 (1%)
Strand = Plus / Plus
Query: 97 gagcaagatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgc 156
||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct: 60 gagcaagatggggtccggatctttcctcaaggtgctggctaacaacttcgatgtcctagc 119
Query: 157 cgggccactcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaa 216
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 120 agggccactcatatcacttgcatatcctctatatgcttctgttagagcaatagagaccaa 179
Query: 217 aaatcctgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcacttt 276
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 aaatcctgtagatgaccagcagtggctcacttactgggtgttgtactcatttatcacttt 239
Query: 277 gtttgagctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagct 336
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 240 gtttgagctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagtt 299
Query: 337 gttctttaactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgacca 396
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 300 gttctttaactgctggttggtcttaccttggttcaatggtgctgcttatgtttacgacca 359
Query: 397 ttttgtgcggccaatgtttgtgaaccgccaaatagtgaacatatggtatattccaagaaa 456
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 360 ttttgtgcggccaacgtttgtgaaccgccaaatagtgaacatatggtatgttccaaggaa 419
Query: 457 tgagaagctaggtaaatctgatgatgttctgtcagctgcagagagatatattgaacaaaa 516
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 420 tgagaagctaggtaaatctgatgatgttctgtcagctgcagagagatatattgagcaaaa 479
Query: 517 cggaccagaagcatttgagaagctcatcagcaagtctacgaagtcttcgaagtcaaggaa 576
||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct: 480 tggaccggaagcatttgagaagctcatcagcaagtctacaaagtcttcaaaatcaaggaa 539
Query: 577 cacaaagcggttgaacttggaggatggagaggctgaaaatcgagctaaagccgagagaga 636
||||||||||| || ||||||||| | |||||||||||| ||||||| || || |||||
Sbjct: 540 cacaaagcggtcgatcttggaggaggcagaggctgaaaacagagctaaggctgaaagaga 599
Query: 637 atcgtggggcgaaaatcccttctacgacaaaaactacagatactaaaccagttcaaaatc 696
|||||||| ||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct: 600 atcgtgggatgaaaatcccttctacgacaaaaattacagatactaaacc------acgtc 653
Query: 697 cactcagcagtttgaaga-tgaccttgctcacgagcctcatgcaagctttagttgcgtc- 754
||||| |||| ||||||| ||||||||| | ||||| ||||| |||||||| |||||
Sbjct: 654 cactcggcagcttgaagacggaccttgcttatgagccccatgcgagctttagccgcgtca 713
Query: 755 --ggaccgaagacgacattcccatatttctgactc 787
| || ||||||||| ||||||||||||||||||
Sbjct: 714 cagaactgaagacgactttcccatatttctgactc 748
>gb|CD226397.1|CD226397 CCC1_45_B08.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_45_B08_A007 5', mRNA sequence
Length = 660
Score = 924 bits (466), Expect = 0.0
Identities = 559/590 (94%)
Strand = Plus / Plus
Query: 97 gagcaagatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgc 156
||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct: 68 gagcaagatggggtccggatctttcctcaaggtgctggctaacaacttcgatgtcctagc 127
Query: 157 cgggccactcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaa 216
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 128 agggccactcatatcacttgcatatcctctatatgcttctgttagagcaatagagaccaa 187
Query: 217 aaatcctgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcacttt 276
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 aaatcctgtagatgaccagcagtggctcacttactgggtgttgtactcatttatcacttt 247
Query: 277 gtttgagctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagct 336
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 248 gtttgagctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagtt 307
Query: 337 gttctttaactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgacca 396
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 308 gttctttaactgctggttggtcttaccttggttcaatggtgctgcttatgtttacgacca 367
Query: 397 ttttgtgcggccaatgtttgtgaaccgccaaatagtgaacatatggtatattccaagaaa 456
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 368 ttttgtgcggccaacgtttgtgaaccgccaaatagtgaacatatggtatgttccaaggaa 427
Query: 457 tgagaagctaggtaaatctgatgatgttctgtcagctgcagagagatatattgaacaaaa 516
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 428 tgagaagctaggtaaatctgatgatgttctgtcagctgcagagagatatattgagcaaaa 487
Query: 517 cggaccagaagcatttgagaagctcatcagcaagtctacgaagtcttcgaagtcaaggaa 576
||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct: 488 tggaccggaagcatttgagaagctcatcagcaagtctacaaagtcttcaaaatcaaggaa 547
Query: 577 cacaaagcggttgaacttggaggatggagaggctgaaaatcgagctaaagccgagagaga 636
||||||||||| || ||||||||| | |||||||||||| ||||||| || || |||||
Sbjct: 548 cacaaagcggtcgatcttggaggaggcagaggctgaaaacagagctaaggctgaaagaga 607
Query: 637 atcgtggggcgaaaatcccttctacgacaaaaactacagatactaaacca 686
|||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 608 atcgtgggatgaaaatcccttctacgacaaaaattacagatactaaacca 657
>gb|AW678479.1|AW678479 WS1_16_E03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 451
Score = 739 bits (373), Expect = 0.0
Identities = 424/441 (96%)
Strand = Plus / Plus
Query: 158 gggccactcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaa 217
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 11 gggccactcatatcacttgcatatcctctatatgcttctgttagagcaatagagaccaaa 70
Query: 218 aatcctgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttg 277
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 aatcctgtagatgaccagcagtggctcacttactgggtgttgtactcatttatcactttg 130
Query: 278 tttgagctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagctg 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 131 tttgagctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagttg 190
Query: 338 ttctttaactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgaccat 397
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 191 ttctttaactgctggttggtcttaccttggttcaatggtgctgcttatgtttacgaccat 250
Query: 398 tttgtgcggccaatgtttgtgaaccgccaaatagtgaacatatggtatattccaagaaat 457
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 251 tttgtgcggccaacgtttgtgaaccgccaaatagtgaacatatggtatgttccaaggaat 310
Query: 458 gagaagctaggtaaatctgatgatgttctgtcagctgcagagagatatattgaacaaaac 517
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 311 gagaagctaggtaaatctgatgatgttctgtcagctgcagagagatatattgagcaaaat 370
Query: 518 ggaccagaagcatttgagaagctcatcagcaagtctacgaagtcttcgaagtcaaggaac 577
||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct: 371 ggaccggaagcatttgagaagctcatcagcaagtctacaaagtcttcaaaatcaaggaac 430
Query: 578 acaaagcggttgaacttggag 598
|||||||||| || |||||||
Sbjct: 431 acaaagcggtcgatcttggag 451
>gb|CD226376.1|CD226376 CCC1_45_B08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_45_B08_A007 3', mRNA sequence
Length = 671
Score = 729 bits (368), Expect = 0.0
Identities = 562/622 (90%), Gaps = 16/622 (2%)
Strand = Plus / Plus
Query: 260 tactcatttatcactttgtttgagctaacttttgctccaattatcgagtggcttccattt 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tactcatttatcactttgtttgagctaacttttgctccaattatcgagtggcttccattt 60
Query: 320 tggtcatatgcaaagctgttctttaactgctggttggtcttgccttggttcaatggtgct 379
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61 tggtcatatgcaaagttgttctttaactgctggttggtcttaccttggttcaatggtgct 120
Query: 380 gcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaatagtgaacata 439
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 121 gcttatgtttacgaccattttgtgcggccaacgtttgtgaaccgccaaatagtgaacata 180
Query: 440 tggtatattccaagaaatgagaagctaggtaaatctgatgatgttctgtcagctgcagag 499
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tggtatgttccaaggaatgagaagctaggtaaatctgatgatgttctgtcagctgcagag 240
Query: 500 agatatattgaacaaaacggaccagaagcatttgagaagctcatcagcaagtctacgaag 559
||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 241 agatatattgagcaaaatggaccggaagcatttgagaagctcatcagcaagtctacaaag 300
Query: 560 tcttcgaagtcaaggaacacaaagcggttgaacttggaggatggagaggctgaaaatcga 619
||||| || ||||||||||||||||||| || ||||||||| | |||||||||||| ||
Sbjct: 301 tcttcaaaatcaaggaacacaaagcggtcgatcttggaggaggcagaggctgaaaacaga 360
Query: 620 gctaaagccgagagagaatcgtggggcgaaaatcccttctacgacaaaaactacagatac 679
||||| || || ||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 361 gctaaggctgaaagagaatcgtgggatgaaaatcccttctacgacaaaaattacagatac 420
Query: 680 taaaccagttcaaaatccactcagcagtttgaaga-tgaccttgctcacgagcctcatgc 738
|||||| | ||||||| |||| ||||||| ||||||||| | ||||| |||||
Sbjct: 421 taaacc------acgtccactcggcagcttgaagacggaccttgcttatgagccccatgc 474
Query: 739 aagctttagttgcgt--cggaccgaagacgacattcccatatttctgactctgaatattg 796
|||||||| |||| | ||| ||||||||| |||||||||||||||||| | || ||
Sbjct: 475 gagctttagccgcgtcacagactgaagacgactttcccatatttctgactc--agtactg 532
Query: 797 taccttgttacatccactgctactacataatgatgagttctagagcaattgtggactgtg 856
||||||||||||||||||||||||| || ||||||| |||||||||||||||| ||
Sbjct: 533 taccttgttacatccactgctacta---aacaatgagttatagagcaattgtggac--tg 587
Query: 857 taaatggaggtagatgctagcg 878
||||||||||||| ||||||||
Sbjct: 588 taaatggaggtagttgctagcg 609
>gb|CD431545.1|CD431545 ETH1_9_C03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_9_C03_A002 5', mRNA sequence
Length = 580
Score = 726 bits (366), Expect = 0.0
Identities = 419/437 (95%)
Strand = Plus / Plus
Query: 97 gagcaagatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgc 156
|||| |||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct: 144 gagcgagatggggtccggatctttcctcaaggtgctggctaacaacttcgatgtcctagc 203
Query: 157 cgggccactcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaa 216
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 204 agggccactcatatcacttgcatatcctctatatgcttctgttagagcaatagagaccaa 263
Query: 217 aaatcctgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcacttt 276
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaatcctgtagatgaccagcagtggctcacttactgggtgttgtactcatttatcacttt 323
Query: 277 gtttgagctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagct 336
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 324 gtttgagctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagtt 383
Query: 337 gttctttaactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgacca 396
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 384 gttctttaactgctggttggtcttaccttggttcaatggtgctgcttatgtttacgacca 443
Query: 397 ttttgtgcggccaatgtttgtgaaccgccaaatagtgaacatatggtatattccaagaaa 456
|||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||| ||
Sbjct: 444 ttttgtgcggccaacgtttgtgaaccgccnaatagtgaacatatggtatgttccaaggaa 503
Query: 457 tgagaagctaggtaaatctgatgatgttctgtcagctgcagagagatatattgaacaaaa 516
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 504 tgagaagctaggtaaatctgatgatgttctgtcagctgcagagagatatattgagcaaaa 563
Query: 517 cggaccagaagcatttg 533
||||| ||||||||||
Sbjct: 564 tggaccggaagcatttg 580
>gb|BM324869.1|BM324869 PIC1_36_H02.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 456
Score = 549 bits (277), Expect = e-154
Identities = 331/349 (94%)
Strand = Plus / Plus
Query: 97 gagcaagatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgc 156
||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct: 108 gagcaagatggggtccggatctttcctcaaggtgctggctaacaacttcgatgtcctagc 167
Query: 157 cgggccactcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaa 216
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 168 acggccactcatatcacttgcatatcctctatatgcttctgttagagcaatagagaccaa 227
Query: 217 aaatcctgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcacttt 276
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 aaatcctgtagatgaccagcagtggctcacttactgggtgttgtactcatttatcacttt 287
Query: 277 gtttgagctaacttttgctccaattatcgagtggcttccattttggtcatatgcaaagct 336
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 288 gtttgagctaacttttgctccaattatcgagtggcttccattttggacatatgcaaagtt 347
Query: 337 gttctttaactgctggttggtcttgccttggttcaatggtgctgcctatgtttacgacca 396
|||||||||||||||||||| ||| |||||| ||||||||||||| ||||||||||| ||
Sbjct: 348 gttctttaactgctggttggccttaccttggatcaatggtgctgcttatgtttacgagca 407
Query: 397 ttttgtgcggccaatgtttgtgaaccgccaaatagtgaacatatggtat 445
|||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 408 ttttgtgcggccaacgtttgtgaaccgccaaatagagaacatatcgtat 456
>gb|CD431488.1|CD431488 ETH1_9_C03.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_9_C03_A002 3', mRNA sequence
Length = 560
Score = 537 bits (271), Expect = e-151
Identities = 459/517 (88%), Gaps = 16/517 (3%)
Strand = Plus / Plus
Query: 365 tggttcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgc 424
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 tggttcaatggtgctgcttatgtttacgaccattttgtgcggccaacgtttgtgaaccgc 60
Query: 425 caaatagtgaacatatggtatattccaagaaatgagaagctaggtaaatctgatgatgtt 484
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 caaatagtgaacatatggtatgttccaaggaatgagaagctaggtaaatctgatgatgtt 120
Query: 485 ctgtcagctgcagagagatatattgaacaaaacggaccagaagcatttgagaagctcatc 544
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 121 ctgtcagctgcagagagatatattgagcaaaatggaccggaagcatttgagaagctcatc 180
Query: 545 agcaagtctacgaagtcttcgaagtcaaggaacacaaagcggttgaacttggaggatgga 604
||||||||||| |||||||| || ||||||||||||||||||| || ||||||||| | |
Sbjct: 181 agcaagtctacaaagtcttcaaaatcaaggaacacaaagcggtcgatcttggaggaggca 240
Query: 605 gaggctgaaaatcgagctaaagccgagagagaatcgtggggcgaaaatcccttctacgac 664
||||||||||| ||||||| || || ||||||||||||| ||||||||||||||||||
Sbjct: 241 gaggctgaaaacagagctaaggctgaaagagaatcgtgggatgaaaatcccttctacgac 300
Query: 665 aaaaactacagatactaaaccagttcaaaatccactcagcagtttgaaga-tgaccttgc 723
||||| ||||||||||||||| | ||||||| |||| ||||||| ||||||||
Sbjct: 301 aaaaattacagatactaaacc------acgtccactcggcagcttgaagacggaccttgc 354
Query: 724 tcacgagcctcatgcaagctttagttgcgt--cggaccgaagacgacattcccatatttc 781
| | ||||| ||||| |||||||| |||| | ||| ||||||||| ||||||||||||
Sbjct: 355 ttatgagccccatgcgagctttagccgcgtcacagactgaagacgactttcccatatttc 414
Query: 782 tgactctgaatattgtaccttgttacatccactgctactacataatgatgagttctagag 841
|||||| | || ||||||||||||||||||||||||||| || ||||||| |||||
Sbjct: 415 tgactc--agtactgtaccttgttacatccactgctacta---aacaatgagttatagag 469
Query: 842 caattgtggactgtgtaaatggaggtagatgctagcg 878
||||||||||| ||||||||||||||| ||||||||
Sbjct: 470 caattgtggac--tgtaaatggaggtagttgctagcg 504
>gb|AW678587.1|AW678587 WS1_16_E03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 557
Score = 529 bits (267), Expect = e-148
Identities = 455/513 (88%), Gaps = 16/513 (3%)
Strand = Plus / Plus
Query: 369 tcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaa 428
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 tcaatggtgctgcttatgtttacgaccattttgtgcggccaacgtttgtgaaccgccaaa 60
Query: 429 tagtgaacatatggtatattccaagaaatgagaagctaggtaaatctgatgatgttctgt 488
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 61 tagtgaacatatggtatgttccaaggaatgagaagctaggtaaatctgatgatgttctgt 120
Query: 489 cagctgcagagagatatattgaacaaaacggaccagaagcatttgagaagctcatcagca 548
|||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 cagctgcagagagatatattgagcaaaatggaccggaagcatttgagaagctcatcagca 180
Query: 549 agtctacgaagtcttcgaagtcaaggaacacaaagcggttgaacttggaggatggagagg 608
||||||| |||||||| || ||||||||||||||||||| || ||||||||| | |||||
Sbjct: 181 agtctacaaagtcttcaaaatcaaggaacacaaagcggtcgatcttggaggaggcagagg 240
Query: 609 ctgaaaatcgagctaaagccgagagagaatcgtggggcgaaaatcccttctacgacaaaa 668
||||||| ||||||| || || ||||||||||||| ||||||||||||||||||||||
Sbjct: 241 ctgaaaacagagctaaggctgaaagagaatcgtgggatgaaaatcccttctacgacaaaa 300
Query: 669 actacagatactaaaccagttcaaaatccactcagcagtttgaaga-tgaccttgctcac 727
| ||||||||||||||| | ||||||| |||| ||||||| ||||||||| |
Sbjct: 301 attacagatactaaacc------acgtccactcggcagcttgaagacggaccttgcttat 354
Query: 728 gagcctcatgcaagctttagttgcgt--cggaccgaagacgacattcccatatttctgac 785
||||| ||||| |||||||| |||| | ||| ||||||||| ||||||||||||||||
Sbjct: 355 gagccccatgcgagctttagccgcgtcacagactgaagacgactttcccatatttctgac 414
Query: 786 tctgaatattgtaccttgttacatccactgctactacataatgatgagttctagagcaat 845
|| | || ||||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 415 tc--agtactgtaccttgttacatccactgctacta---aacaatgagttatagagcaat 469
Query: 846 tgtggactgtgtaaatggaggtagatgctagcg 878
||||||| ||||||||||||||| ||||||||
Sbjct: 470 tgtggac--tgtaaatggaggtagttgctagcg 500
>gb|CF073329.1|CF073329 FE1_22_C10.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_22_C10_A002 5', mRNA sequence
Length = 605
Score = 410 bits (207), Expect = e-112
Identities = 389/445 (87%), Gaps = 16/445 (3%)
Strand = Plus / Minus
Query: 437 atatggtatattccaagaaatgagaagctaggtaaatctgatgatgttctgtcagctgca 496
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 atatggtatgttccaaggaatgagaagctaggtaaatctgatgatgttctgtcagctgca 546
Query: 497 gagagatatattgaacaaaacggaccagaagcatttgagaagctcatcagcaagtctacg 556
|||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 545 gagagatatattgagcaaaatggaccggaagcatttgagaagctcatcagcaagtctaca 486
Query: 557 aagtcttcgaagtcaaggaacacaaagcggttgaacttggaggatggagaggctgaaaat 616
|||||||| || ||||||||||||||||||| || ||||||||| | ||||||||||||
Sbjct: 485 aagtcttcaaaatcaaggaacacaaagcggtcgatcttggaggaggcagaggctgaaaac 426
Query: 617 cgagctaaagccgagagagaatcgtggggcgaaaatcccttctacgacaaaaactacaga 676
||||||| || || ||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 425 agagctaaggctgaaagagaatcgtgggatgaaaatcccttctacgacaaaaattacaga 366
Query: 677 tactaaaccagttcaaaatccactcagcagtttgaaga-tgaccttgctcacgagcctca 735
||||||||| | ||||||| |||| ||||||| ||||||||| | ||||| ||
Sbjct: 365 tactaaacc------acgtccactcggcagcttgaagacggaccttgcttatgagcccca 312
Query: 736 tgcaagctttagttgcgt--cggaccgaagacgacattcccatatttctgactctgaata 793
||| |||||||| |||| | ||| ||||||||| |||||||||||||||||| | ||
Sbjct: 311 tgcgagctttagccgcgtcacagactgaagacgactttcccatatttctgactc--agta 254
Query: 794 ttgtaccttgttacatccactgctactacataatgatgagttctagagcaattgtggact 853
||||||||||||||||||||||||||| || ||||||| ||||||||||||||||
Sbjct: 253 ctgtaccttgttacatccactgctacta---aacaatgagttatagagcaattgtggac- 198
Query: 854 gtgtaaatggaggtagatgctagcg 878
||||||||||||||| ||||||||
Sbjct: 197 -tgtaaatggaggtagttgctagcg 174
>gb|CW165736.1|CW165736 104_574_11152669_148_36480_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152669, DNA
sequence
Length = 690
Score = 408 bits (206), Expect = e-112
Identities = 233/242 (96%)
Strand = Plus / Plus
Query: 309 ggcttccattttggtcatatgcaaagctgttctttaactgctggttggtcttgccttggt 368
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 358 ggcttccattttggtcatatgcaaagttgttctttaactgctggttggtcttaccttggt 417
Query: 369 tcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaaa 428
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 418 tcaatggtgctgcttatgtttacgaccattttgtgcggccaacgtttgtgaaccgccaaa 477
Query: 429 tagtgaacatatggtatattccaagaaatgagaagctaggtaaatctgatgatgttctgt 488
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 478 tagtgaacatatggtatgttccaaggaatgagaagctaggtaaatctgatgatgttctgt 537
Query: 489 cagctgcagagagatatattgaacaaaacggaccagaagcatttgagaagctcatcagca 548
|||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct: 538 cagctgcagagagatatattgagcaaaatggaccggaagcatttgagaagctcatcagca 597
Query: 549 ag 550
||
Sbjct: 598 ag 599
Score = 230 bits (116), Expect = 2e-058
Identities = 122/124 (98%)
Strand = Plus / Plus
Query: 187 atatgcttctgttagagcaatagagacaaaaaatcctgtagatgatcagcagtggctcac 246
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 104 atatgcttctgttagagcaatagagaccaaaaatcctgtagatgaccagcagtggctcac 163
Query: 247 ttactgggtgttgtactcatttatcactttgtttgagctaacttttgctccaattatcga 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ttactgggtgttgtactcatttatcactttgtttgagctaacttttgctccaattatcga 223
Query: 307 gtgg 310
||||
Sbjct: 224 gtgg 227
>gb|BM329363.1|BM329363 PIC1_36_H02.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 498
Score = 333 bits (168), Expect = 2e-089
Identities = 377/442 (85%), Gaps = 16/442 (3%)
Strand = Plus / Plus
Query: 440 tggtatattccaagaaatgagaagctaggtaaatctgatgatgttctgtcagctgcagag 499
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtatgttccaaggaatgagaagctaggtaaatctgatgatgttctgtcagctgcagag 60
Query: 500 agatatattgaacaaaacggaccagaagcatttgagaagctcatcagcaagtctacgaag 559
||||||||||| ||||| ||||| ||||||||||||||| |||||||||||||||| |||
Sbjct: 61 agatatattgagcaaaatggaccggaagcatttgagaagttcatcagcaagtctacaaag 120
Query: 560 tcttcgaagtcaaggaacacaaagcggttgaacttggaggatggagaggctgaaaatcga 619
| ||| || ||||||||||||||||||| | || |||||| | |||||||||||| ||
Sbjct: 121 tgttcaaaatcaaggaacacaaagcggtcgttctaggaggaggcagaggctgaaaacaga 180
Query: 620 gctaaagccgagagagaatcgtggggcgaaaatcccttctacgacaaaaactacagatac 679
||||| | || ||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 181 gctaagtctgaaagagaatcgtgggatgaaaatcccttctacgacaaaaattacagatag 240
Query: 680 taaaccagttcaaaatccactcagcagtttgaaga-tgaccttgctcacgagcctcatgc 738
|||||| | ||||||| |||| | ||||| ||||||||| | ||||| |||||
Sbjct: 241 taaacc------acgtccactcggcagctagaagacggaccttgcttatgagccccatgc 294
Query: 739 aagctttagttgcgt--cggaccgaagacgacattcccatatttctgactctgaatattg 796
|||||||| |||| | ||| ||||||||| |||||||||||||||||| | || ||
Sbjct: 295 gagctttagccgcgtcacagactgaagacgactttcccatatttctgactc--agtactg 352
Query: 797 taccttgttacatccactgctactacataatgatgagttctagagcaattgtggactgtg 856
||||||||||||||||||| || || || ||||||| |||||||||||||||| ||
Sbjct: 353 taccttgttacatccactgatatta---aacaatgagttatagagcaattgtggac--tg 407
Query: 857 taaatggaggtagatgctagcg 878
||||||||||||| ||||||||
Sbjct: 408 taaatggaggtagttgctagcg 429
>gb|CW165735.1|CW165735 104_574_11152669_116_36484_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152669, DNA
sequence
Length = 678
Score = 256 bits (129), Expect = 4e-066
Identities = 147/153 (96%)
Strand = Plus / Minus
Query: 398 tttgtgcggccaatgtttgtgaaccgccaaatagtgaacatatggtatattccaagaaat 457
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 678 tttgtgcggccaacgtttgtgaaccgccaaatagtgaacatatggtatgttccaaggaat 619
Query: 458 gagaagctaggtaaatctgatgatgttctgtcagctgcagagagatatattgaacaaaac 517
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 618 gagaagctaggtaaatctgatgatgttctgtcagctgcagagagatatattgagcaaaat 559
Query: 518 ggaccagaagcatttgagaagctcatcagcaag 550
||||| |||||||||||||||||||||||||||
Sbjct: 558 ggaccggaagcatttgagaagctcatcagcaag 526
>gb|CF769332.1|CF769332 DSBF1_1_B03.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_1_B03_A010 5', mRNA sequence
Length = 409
Score = 165 bits (83), Expect = 1e-038
Identities = 229/273 (83%), Gaps = 16/273 (5%)
Strand = Plus / Plus
Query: 609 ctgaaaatcgagctaaagccgagagagaatcgtggggcgaaaatcccttctacgacaaaa 668
||||||| ||||||| || || ||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ctgaaaacagagctaaggctgaaagagaatcgtgggatgaaaatcccttctacgacaaaa 60
Query: 669 actacagatactaaaccagttcaaaatccactcagcagtttgaagatg-accttgctcac 727
| |||||||||||||||| || ||||| |||| ||||||| | |||||||| |
Sbjct: 61 attacagatactaaaccacgtc------cactcggcagcttgaagacggaccttgcttat 114
Query: 728 gagcctcatgcaagctttagttgcgtcg--gaccgaagacgacattcccatatttctgac 785
||||| ||||| |||||||| ||||| ||| ||||||||| ||||||||||||||||
Sbjct: 115 gagccccatgcgagctttagccgcgtcacagactgaagacgactttcccatatttctgac 174
Query: 786 tctgaatattgtaccttgttacatccactgctactacataatgatgagttctagagcaat 845
|| | || ||||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 175 tcag--tactgtaccttgttacatccactgctacta---aacaatgagttatagagcaat 229
Query: 846 tgtggactgtgtaaatggaggtagatgctagcg 878
||||||| ||||||||||||||| ||||||||
Sbjct: 230 tgtggac--tgtaaatggaggtagttgctagcg 260
>gb|CF769417.1|CF769417 DSBF1_1_B03.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_1_B03_A010 3', mRNA sequence
Length = 392
Score = 165 bits (83), Expect = 1e-038
Identities = 229/273 (83%), Gaps = 16/273 (5%)
Strand = Plus / Plus
Query: 609 ctgaaaatcgagctaaagccgagagagaatcgtggggcgaaaatcccttctacgacaaaa 668
||||||| ||||||| || || ||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ctgaaaacagagctaaggctgaaagagaatcgtgggatgaaaatcccttctacgacaaaa 60
Query: 669 actacagatactaaaccagttcaaaatccactcagcagtttgaagatg-accttgctcac 727
| |||||||||||||||| || ||||| |||| ||||||| | |||||||| |
Sbjct: 61 attacagatactaaaccacgtc------cactcggcagcttgaagacggaccttgcttat 114
Query: 728 gagcctcatgcaagctttagttgcgtcg--gaccgaagacgacattcccatatttctgac 785
||||| ||||| |||||||| ||||| ||| ||||||||| ||||||||||||||||
Sbjct: 115 gagccccatgcgagctttagccgcgtcacagactgaagacgactttcccatatttctgac 174
Query: 786 tctgaatattgtaccttgttacatccactgctactacataatgatgagttctagagcaat 845
|| | || ||||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 175 tcag--tactgtaccttgttacatccactgctacta---aacaatgagttatagagcaat 229
Query: 846 tgtggactgtgtaaatggaggtagatgctagcg 878
||||||| ||||||||||||||| ||||||||
Sbjct: 230 tgtggac--tgtaaatggaggtagttgctagcg 260
>gb|CF770196.1|CF770196 DSBF1_6_F05.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_6_F05_A010 5', mRNA sequence
Length = 411
Score = 165 bits (83), Expect = 1e-038
Identities = 229/273 (83%), Gaps = 16/273 (5%)
Strand = Plus / Plus
Query: 609 ctgaaaatcgagctaaagccgagagagaatcgtggggcgaaaatcccttctacgacaaaa 668
||||||| ||||||| || || ||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ctgaaaacagagctaaggctgaaagagaatcgtgggatgaaaatcccttctacgacaaaa 60
Query: 669 actacagatactaaaccagttcaaaatccactcagcagtttgaagatg-accttgctcac 727
| |||||||||||||||| || ||||| |||| ||||||| | |||||||| |
Sbjct: 61 attacagatactaaaccacgtc------cactcggcagcttgaagacggaccttgcttat 114
Query: 728 gagcctcatgcaagctttagttgcgtcg--gaccgaagacgacattcccatatttctgac 785
||||| ||||| |||||||| ||||| ||| ||||||||| ||||||||||||||||
Sbjct: 115 gagccccatgcgagctttagccgcgtcacagactgaagacgactttcccatatttctgac 174
Query: 786 tctgaatattgtaccttgttacatccactgctactacataatgatgagttctagagcaat 845
|| | || ||||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 175 tcag--tactgtaccttgttacatccactgctacta---aacaatgagttatagagcaat 229
Query: 846 tgtggactgtgtaaatggaggtagatgctagcg 878
||||||| ||||||||||||||| ||||||||
Sbjct: 230 tgtggac--tgtaaatggaggtagttgctagcg 260
>gb|CF770272.1|CF770272 DSBF1_6_F05.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_6_F05_A010 3', mRNA sequence
Length = 390
Score = 165 bits (83), Expect = 1e-038
Identities = 229/273 (83%), Gaps = 16/273 (5%)
Strand = Plus / Plus
Query: 609 ctgaaaatcgagctaaagccgagagagaatcgtggggcgaaaatcccttctacgacaaaa 668
||||||| ||||||| || || ||||||||||||| ||||||||||||||||||||||
Sbjct: 1 ctgaaaacagagctaaggctgaaagagaatcgtgggatgaaaatcccttctacgacaaaa 60
Query: 669 actacagatactaaaccagttcaaaatccactcagcagtttgaagatg-accttgctcac 727
| |||||||||||||||| || ||||| |||| ||||||| | |||||||| |
Sbjct: 61 attacagatactaaaccacgtc------cactcggcagcttgaagacggaccttgcttat 114
Query: 728 gagcctcatgcaagctttagttgcgtcg--gaccgaagacgacattcccatatttctgac 785
||||| ||||| |||||||| ||||| ||| ||||||||| ||||||||||||||||
Sbjct: 115 gagccccatgcgagctttagccgcgtcacagactgaagacgactttcccatatttctgac 174
Query: 786 tctgaatattgtaccttgttacatccactgctactacataatgatgagttctagagcaat 845
|| | || ||||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct: 175 tcag--tactgtaccttgttacatccactgctacta---aacaatgagttatagagcaat 229
Query: 846 tgtggactgtgtaaatggaggtagatgctagcg 878
||||||| ||||||||||||||| ||||||||
Sbjct: 230 tgtggac--tgtaaatggaggtagttgctagcg 260
>gb|CW486008.1|CW486008 fsbb001f249a14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f249a14, DNA
sequence
Length = 734
Score = 155 bits (78), Expect = 1e-035
Identities = 123/138 (89%)
Strand = Plus / Plus
Query: 549 agtctacgaagtcttcgaagtcaaggaacacaaagcggttgaacttggaggatggagagg 608
||||||| |||||||| || ||||||||||||||||||| || ||||||||| | |||||
Sbjct: 41 agtctacaaagtcttcaaaatcaaggaacacaaagcggtcgatcttggaggaggcagagg 100
Query: 609 ctgaaaatcgagctaaagccgagagagaatcgtggggcgaaaatcccttctacgacaaaa 668
||||||| ||||||| || || ||||||||||||| ||||||||||||||||||||||
Sbjct: 101 ctgaaaacagagctaaggctgaaagagaatcgtgggatgaaaatcccttctacgacaaaa 160
Query: 669 actacagatactaaacca 686
| ||||||||||||||||
Sbjct: 161 attacagatactaaacca 178
Score = 115 bits (58), Expect = 8e-024
Identities = 141/165 (85%), Gaps = 9/165 (5%)
Strand = Plus / Plus
Query: 716 gaccttgctcacgagcctcatgcaagctttagttgcgtcg--gaccgaagacgacattcc 773
||||||||| | ||||| ||||| |||||||| ||||| ||| ||||||||| ||||
Sbjct: 288 gaccttgcttatgagccccatgcgagctttagccgcgtcacagactgaagacgactttcc 347
Query: 774 catatttctgactctgaatattgtaccttgttacatccactgctactacataatgatgag 833
|||||||||||||| | || ||||||||||||||||||||||||||| || |||||
Sbjct: 348 catatttctgactcag--tactgtaccttgttacatccactgctacta---aacaatgag 402
Query: 834 ttctagagcaattgtggactgtgtaaatggaggtagatgctagcg 878
|| |||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 403 ttatagagcaattgtggac--tgtaaatggaggtagttgctagcg 445
>gb|BG817396.1|BG817396 EM1_75_D03.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 504
Score = 97.6 bits (49), Expect = 2e-018
Identities = 172/213 (80%)
Strand = Plus / Plus
Query: 103 gatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggcc 162
|||||| ||||||||||| |||||||| | ||||| |||||||| |||||||| |||||
Sbjct: 199 gatgggctccggatctttgctcaaggtcgtcgccaacaacttcgacgtccttgcagggcc 258
Query: 163 actcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcc 222
| | |||| ||||||||| | ||||| || |||| ||||||||||| ||| |||
Sbjct: 259 tttggtggcactggcttatcctttgtatgcctccgttaaggcaatagagaccaaatctcc 318
Query: 223 tgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttga 282
||| |||||||| || |||||||| || ||||| |||||||||| || || ||||||||
Sbjct: 319 tgtggatgatcaacaatggctcacatattgggtcctgtactcattaataacattgtttga 378
Query: 283 gctaacttttgctccaattatcgagtggcttcc 315
|| || ||||| ||||||| ||||||||||
Sbjct: 379 actcacatttgcatcaattattcagtggcttcc 411
>gb|BI075210.1|BI075210 IP1_17_E01.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 453
Score = 97.6 bits (49), Expect = 2e-018
Identities = 172/213 (80%)
Strand = Plus / Plus
Query: 103 gatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggcc 162
|||||| ||||||||||| |||||||| | ||||| |||||||| |||||||| |||||
Sbjct: 187 gatgggctccggatctttgctcaaggtcgtcgccaacaacttcgacgtccttgcagggcc 246
Query: 163 actcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcc 222
| | |||| ||||||||| | ||||| || |||| ||||||||||| ||| |||
Sbjct: 247 tttggtggcactggcttatcctttgtatgcctccgttaaggcaatagagaccaaatctcc 306
Query: 223 tgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttga 282
||| |||||||| || |||||||| || ||||| |||||||||| || || ||||||||
Sbjct: 307 tgtggatgatcaacaatggctcacatattgggtcctgtactcattaataacattgtttga 366
Query: 283 gctaacttttgctccaattatcgagtggcttcc 315
|| || ||||| ||||||| ||||||||||
Sbjct: 367 actcacatttgcatcaattattcagtggcttcc 399
>gb|BF587278.1|BF587278 FM1_34_D12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 499
Score = 81.8 bits (41), Expect = 1e-013
Identities = 170/213 (79%)
Strand = Plus / Plus
Query: 103 gatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggcc 162
|||||| ||||||||| | |||||||| | ||||| |||||||| |||||||| |||||
Sbjct: 189 gatgggctccggatctctgctcaaggtcgtcgccaacaacttcgacgtccttgcagggcc 248
Query: 163 actcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcc 222
| | |||| ||||||||| | ||||| || |||| ||||||||||| ||| | |
Sbjct: 249 tttggtggcactggcttatcctttgtatgcctccgttaaggcaatagagaccaaatctgc 308
Query: 223 tgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttga 282
||| |||||||| || |||||||| || ||||| |||||||||| || || ||||||||
Sbjct: 309 tgtggatgatcaacaatggctcacatattgggtcctgtactcattaataacattgtttga 368
Query: 283 gctaacttttgctccaattatcgagtggcttcc 315
|| || ||||| ||||||| ||||||||||
Sbjct: 369 actcacatttgcatcaattattcagtggcttcc 401
>gb|CN126731.1|CN126731 RHOH1_18_G11.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_18_G11_A002 5', mRNA sequence
Length = 778
Score = 81.8 bits (41), Expect = 1e-013
Identities = 170/213 (79%)
Strand = Plus / Plus
Query: 103 gatggggtccggatctttcctcaaggtgctggccaagaacttcgatgtccttgccgggcc 162
|||||| ||||||||||| |||||||| | ||||| |||||||| |||||||| |||||
Sbjct: 209 gatgggctccggatctttgctcaaggtcgtcgccaacaacttcgacgtccttgcagggcc 268
Query: 163 actcatatcacttgcttatcctctatatgcttctgttagagcaatagagacaaaaaatcc 222
| | |||| ||||||||| | ||||| || |||| ||||||||||| ||| |||
Sbjct: 269 tttggtggcactggcttatcctttgtatgcctccgttaaggcaatagagaccaaatctcc 328
Query: 223 tgtagatgatcagcagtggctcacttactgggtgttgtactcatttatcactttgtttga 282
||| |||||||| || |||||||| || ||||| ||||| |||| || || ||||||||
Sbjct: 329 tgtggatgatcaacaatggctcacatattgggtcctgtacccattaataacattgtttga 388
Query: 283 gctaacttttgctccaattatcgagtggcttcc 315
| || ||||| ||||||| ||||||||||
Sbjct: 389 acccacatttgcatcaattattcagtggcttcc 421
>gb|BZ338345.1|BZ338345 ia94f11.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ia94f11 5', DNA sequence
Length = 714
Score = 58.0 bits (29), Expect = 2e-006
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 203 gcaatagagacaaaaaatcctgtagatgatcagcagtggctcacttactgggtgttgtac 262
||||||||||| ||| |||||| |||||||| || |||||||| || ||||| |||||
Sbjct: 259 gcaatagagaccaaatctcctgtggatgatcaacaatggctcacatattgggtcctgtac 318
Query: 263 tcatttatcactttgtttgagctaacttttgctccaattat 303
||||| || || |||||||| || || ||||| |||||||
Sbjct: 319 tcattaataacattgtttgaactcacatttgcatcaattat 359
>gb|CW281816.1|CW281816 104_757_11408379_148_35459_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11408379, DNA
sequence
Length = 747
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 549 agtctacgaagtcttcgaagtcaaggaacacaaagcggt 587
||||||| |||||||| || |||||||||||||||||||
Sbjct: 46 agtctacaaagtcttcaaaatcaaggaacacaaagcggt 8
>gb|CW060149.1|CW060149 104_303_10519704_1_30042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10519704, DNA
sequence
Length = 643
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 230 gatcagcagtggctcacttactgggtgttgtactc 264
||||||||||||||||| |||||||| |||||||
Sbjct: 435 gatcagcagtggctcacctactgggtcctgtactc 469
>gb|CW162368.1|CW162368 104_569_11150905_148_36439_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150905, DNA
sequence
Length = 723
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 230 gatcagcagtggctcacttactgggtgttgtactc 264
||||||||||||||||| |||||||| |||||||
Sbjct: 718 gatcagcagtggctcacctactgggtcctgtactc 684
>gb|CW167929.1|CW167929 104_577_11153869_148_36492_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11153869, DNA
sequence
Length = 704
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 230 gatcagcagtggctcacttactgggtgttgtactc 264
||||||||||||||||| |||||||| |||||||
Sbjct: 74 gatcagcagtggctcacctactgggtcctgtactc 40
>gb|CW451391.1|CW451391 fsbb001f191h03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191h03, DNA
sequence
Length = 591
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 230 gatcagcagtggctcacttactgggtgttgtactc 264
||||||||||||||||| |||||||| |||||||
Sbjct: 314 gatcagcagtggctcacctactgggtcctgtactc 280
>gb|CW451392.1|CW451392 fsbb001f191h03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191h03, DNA
sequence
Length = 696
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 230 gatcagcagtggctcacttactgggtgttgtactc 264
||||||||||||||||| |||||||| |||||||
Sbjct: 556 gatcagcagtggctcacctactgggtcctgtactc 590
>gb|CD213563.1|CD213563 HS1_41_D11.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_41_D11_A012 5', mRNA sequence
Length = 707
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 83 ggaggaggagcagagagcaag 103
|||||||||||||||||||||
Sbjct: 153 ggaggaggagcagagagcaag 173
>gb|CW223489.1|CW223489 104_659_11202943_148_37190_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11202943, DNA
sequence
Length = 625
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 110 tccggatctttcctcaaggt 129
||||||||||||||||||||
Sbjct: 163 tccggatctttcctcaaggt 144
>gb|CW366119.1|CW366119 fsbb001f038p12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f038p12, DNA
sequence
Length = 603
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 110 tccggatctttcctcaaggt 129
||||||||||||||||||||
Sbjct: 107 tccggatctttcctcaaggt 88
>gb|CW473388.1|CW473388 fsbb001f228l19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f228l19, DNA
sequence
Length = 600
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 110 tccggatctttcctcaaggt 129
||||||||||||||||||||
Sbjct: 417 tccggatctttcctcaaggt 436
>gb|CW488973.1|CW488973 fsbb001f265k08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f265k08, DNA
sequence
Length = 732
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 110 tccggatctttcctcaaggt 129
||||||||||||||||||||
Sbjct: 623 tccggatctttcctcaaggt 642
>gb|BE357690.1|BE357690 DG1_21_F02.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 546
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 756 gaccgaagacgacattccca 775
||||||||||||||||||||
Sbjct: 254 gaccgaagacgacattccca 273
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 258,716
Number of Sequences: 832831
Number of extensions: 258716
Number of successful extensions: 69881
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69795
Number of HSP's gapped (non-prelim): 56
length of query: 1044
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1024
effective length of database: 474,703,049
effective search space: 486095922176
effective search space used: 486095922176
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)