BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2949674.2.1
(658 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BZ335127.1|BZ335127 hx95f10.b1 WGS-SbicolorF (JM107 adap... 325 3e-087
gb|CW226517.1|CW226517 104_664_11204928_148_37221_088 Sorgh... 325 3e-087
gb|CW107565.1|CW107565 104_477_11096662_148_34471_081 Sorgh... 184 7e-045
gb|BE355933.1|BE355933 DG1_11_G12.g1_A002 Dark Grown 1 (DG1... 184 7e-045
gb|CF481560.1|CF481560 POL1_72_E06.g1_A002 Pollen Sorghum b... 184 7e-045
gb|CF483204.1|CF483204 POL1_12_A09.g1_A002 Pollen Sorghum b... 184 7e-045
gb|CF484250.1|CF484250 POL1_4_C10.b1_A002 Pollen Sorghum bi... 184 7e-045
gb|CF484323.1|CF484323 POL1_4_C10.g1_A002 Pollen Sorghum bi... 184 7e-045
gb|CF485923.1|CF485923 POL1_34_C10.g1_A002 Pollen Sorghum b... 184 7e-045
gb|CF489093.1|CF489093 POL1_54_H04.b1_A002 Pollen Sorghum b... 184 7e-045
gb|CF489427.1|CF489427 POL1_57_B10.g1_A002 Pollen Sorghum b... 184 7e-045
gb|CF488807.1|CF488807 POL1_52_G10.b1_A002 Pollen Sorghum b... 176 2e-042
gb|CF484658.1|CF484658 POL1_26_E07.g1_A002 Pollen Sorghum b... 172 3e-041
gb|CW356428.1|CW356428 fsbb001f021i03f0 Sorghum methylation... 145 6e-033
gb|CL168403.1|CL168403 104_366_10810792_148_31806_088 Sorgh... 137 1e-030
gb|CW443839.1|CW443839 fsbb001f164c12f0 Sorghum methylation... 137 1e-030
gb|BE357918.1|BE357918 DG1_23_F06.b1_A002 Dark Grown 1 (DG1... 137 1e-030
gb|BE357990.1|BE357990 DG1_23_F06.g1_A002 Dark Grown 1 (DG1... 137 1e-030
gb|BE358689.1|BE358689 DG1_31_E11.b1_A002 Dark Grown 1 (DG1... 137 1e-030
gb|BE358567.1|BE358567 DG1_31_E11.g1_A002 Dark Grown 1 (DG1... 137 1e-030
gb|CW301949.1|CW301949 104_786_11464467_116_35662_016 Sorgh... 129 4e-028
gb|CW387256.1|CW387256 fsbb001f071i10f0 Sorghum methylation... 123 2e-026
gb|BE355997.1|BE355997 DG1_121_G12.b1_A002 Dark Grown 1 (DG... 123 2e-026
gb|CW356429.1|CW356429 fsbb001f021i03k0 Sorghum methylation... 113 2e-023
gb|CF485855.1|CF485855 POL1_34_C10.b1_A002 Pollen Sorghum b... 103 2e-020
gb|DR831474.2|DR831474 MT103 Sorghum bicolor greenbug-respo... 90 3e-016
gb|CW270223.1|CW270223 104_741_11402291_148_35328_036 Sorgh... 82 7e-014
gb|AI724401.1|AI724401 RHIZ1_36_C02.y2_A001 Rhizome1 (RHIZ1... 82 7e-014
gb|CW305081.1|CW305081 104_790_11466128_148_37437_028 Sorgh... 74 2e-011
gb|CW226516.1|CW226516 104_664_11204928_116_37222_088 Sorgh... 72 7e-011
gb|BE356045.1|BE356045 DG1_121_G12.g1_A002 Dark Grown 1 (DG... 72 7e-011
gb|BE598060.1|BE598060 PI1_65_B12.b1_A002 Pathogen induced ... 72 7e-011
gb|CW029423.1|CW029423 104_257_10499668_114_30401 Sorghum m... 56 4e-006
gb|CW029597.1|CW029597 104_257_10499765_114_30401 Sorghum m... 56 4e-006
gb|CW045294.1|CW045294 104_281_10509471_114_30238 Sorghum m... 56 4e-006
gb|CW229857.1|CW229857 104_671_11207539_116_37267_074 Sorgh... 56 4e-006
gb|CW355698.1|CW355698 fsbb001f020h05f0 Sorghum methylation... 56 4e-006
gb|BG049459.1|BG049459 OV1_20_C05.g1_A002 Ovary 1 (OV1) Sor... 56 4e-006
gb|BG240293.1|BG240293 OV1_20_C05.b1_A002 Ovary 1 (OV1) Sor... 56 4e-006
gb|BG240430.1|BG240430 OV1_29_G05.b1_A002 Ovary 1 (OV1) Sor... 56 4e-006
gb|BG239846.1|BG239846 OV1_29_G05.g1_A002 Ovary 1 (OV1) Sor... 50 3e-004
gb|CW387257.1|CW387257 fsbb001f071i10k0 Sorghum methylation... 44 0.016
gb|BZ423273.1|BZ423273 id47d08.g1 WGS-SbicolorF (DH5a methy... 40 0.25
gb|CW046692.1|CW046692 104_284_10512285_114_30219 Sorghum m... 40 0.25
gb|CW448961.1|CW448961 fsbb001f182n09k0 Sorghum methylation... 40 0.25
gb|BM318087.1|BM318087 PI1_78_D03.g9_A002 Pathogen induced ... 40 0.25
gb|BM328734.1|BM328734 PIC1_25_H10.g1_A002 Pathogen-infecte... 40 0.25
>gb|BZ335127.1|BZ335127 hx95f10.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx95f10 5', DNA sequence
Length = 670
Score = 325 bits (164), Expect = 3e-087
Identities = 185/192 (96%)
Strand = Plus / Minus
Query: 347 gagtgcggcggccggtgcgcggagcggtgctcggcgacggcgtaccagaagccgtgcctc 406
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 462 gagtgcggcggccggtgcgcggcgcggtgctcggcgacggcgtaccggaagccgtgcctc 403
Query: 407 ttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaac 466
||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 402 ttcttctgccggaagtgctgcgcgacgtgcctgtgcgtgccggcgggcacctacggcaac 343
Query: 467 aagaacacctgcccctgctacaacaactggaagaccaagcggggaggccccaagtgcccc 526
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 342 aagaacacctgcccctgctacaacaactggaagaccaagaggggaggccccaagtgcccc 283
Query: 527 tagtagccctcc 538
|||||| |||||
Sbjct: 282 tagtaggcctcc 271
>gb|CW226517.1|CW226517 104_664_11204928_148_37221_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204928, DNA
sequence
Length = 679
Score = 325 bits (164), Expect = 3e-087
Identities = 185/192 (96%)
Strand = Plus / Minus
Query: 347 gagtgcggcggccggtgcgcggagcggtgctcggcgacggcgtaccagaagccgtgcctc 406
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 235 gagtgcggcggccggtgcgcggcgcggtgctcggcgacggcgtaccggaagccgtgcctc 176
Query: 407 ttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaac 466
||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 175 ttcttctgccggaagtgctgcgcgacgtgcctgtgcgtgccggcgggcacctacggcaac 116
Query: 467 aagaacacctgcccctgctacaacaactggaagaccaagcggggaggccccaagtgcccc 526
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 115 aagaacacctgcccctgctacaacaactggaagaccaagaggggaggccccaagtgcccc 56
Query: 527 tagtagccctcc 538
|||||| |||||
Sbjct: 55 tagtaggcctcc 44
Score = 67.9 bits (34), Expect = 1e-009
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 178 ccaggccgcttgtttcgtgccgacgccgggtccagctccggc 219
||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 609 ccaggccgcttatttcgtgccgtcgccgggtccagctccggc 568
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 264 ctcctcggccagccaagcccagcgcattcccgcccccaatg 304
|||||| |||||||||||||| ||||||||| | |||||||
Sbjct: 538 ctcctccgccagccaagcccaacgcattcccactcccaatg 498
>gb|CW107565.1|CW107565 104_477_11096662_148_34471_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096662, DNA
sequence
Length = 551
Score = 184 bits (93), Expect = 7e-045
Identities = 123/133 (92%)
Strand = Plus / Minus
Query: 393 agaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgg 452
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 264 agaagccgtgcctcttcttctgcaacaagtgctgcgccaagtgcctgtgcgtgccgccgg 205
Query: 453 gcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcggggag 512
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 204 gcacctacggcaacaaggacacctgcccctgctacaacaactggaagaccaagagaggag 145
Query: 513 gccccaagtgccc 525
| ||||| |||||
Sbjct: 144 gtcccaaatgccc 132
>gb|BE355933.1|BE355933 DG1_11_G12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 599
Score = 184 bits (93), Expect = 7e-045
Identities = 123/133 (92%)
Strand = Plus / Plus
Query: 393 agaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgg 452
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 259 agaagccgtgcctcttcttctgcaacaagtgctgcgccaagtgcctgtgcgtgccgccgg 318
Query: 453 gcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcggggag 512
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 319 gcacctacggcaacaaggacacctgcccctgctacaacaactggaagaccaagagaggag 378
Query: 513 gccccaagtgccc 525
| ||||| |||||
Sbjct: 379 gtcccaaatgccc 391
>gb|CF481560.1|CF481560 POL1_72_E06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_72_E06_A002 5', mRNA sequence
Length = 628
Score = 184 bits (93), Expect = 7e-045
Identities = 123/133 (92%)
Strand = Plus / Plus
Query: 393 agaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgg 452
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 358 agaagccgtgcctcttcttctgcaacaagtgctgcgccaagtgcctgtgcgtgccgccgg 417
Query: 453 gcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcggggag 512
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 418 gcacctacggcaacaaggacacctgcccctgctacaacaactggaagaccaagagaggag 477
Query: 513 gccccaagtgccc 525
| ||||| |||||
Sbjct: 478 gtcccaaatgccc 490
>gb|CF483204.1|CF483204 POL1_12_A09.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_12_A09_A002 5', mRNA sequence
Length = 490
Score = 184 bits (93), Expect = 7e-045
Identities = 123/133 (92%)
Strand = Plus / Minus
Query: 393 agaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgg 452
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 379 agaagccgtgcctcttcttctgcaacaagtgctgcgccaagtgcctgtgcgtgccgccgg 320
Query: 453 gcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcggggag 512
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 319 gcacctacggcaacaaggacacctgcccctgctacaacaactggaagaccaagagaggag 260
Query: 513 gccccaagtgccc 525
| ||||| |||||
Sbjct: 259 gtcccaaatgccc 247
>gb|CF484250.1|CF484250 POL1_4_C10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_4_C10_A002 3', mRNA sequence
Length = 576
Score = 184 bits (93), Expect = 7e-045
Identities = 123/133 (92%)
Strand = Plus / Plus
Query: 393 agaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgg 452
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 225 agaagccgtgcctcttcttctgcaacaagtgctgcgccaagtgcctgtgcgtgccgccgg 284
Query: 453 gcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcggggag 512
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 285 gcacctacggcaacaaggacacctgcccctgctacaacaactggaagaccaagagaggag 344
Query: 513 gccccaagtgccc 525
| ||||| |||||
Sbjct: 345 gtcccaaatgccc 357
>gb|CF484323.1|CF484323 POL1_4_C10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_4_C10_A002 5', mRNA sequence
Length = 626
Score = 184 bits (93), Expect = 7e-045
Identities = 123/133 (92%)
Strand = Plus / Plus
Query: 393 agaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgg 452
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 356 agaagccgtgcctcttcttctgcaacaagtgctgcgccaagtgcctgtgcgtgccgccgg 415
Query: 453 gcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcggggag 512
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 416 gcacctacggcaacaaggacacctgcccctgctacaacaactggaagaccaagagaggag 475
Query: 513 gccccaagtgccc 525
| ||||| |||||
Sbjct: 476 gtcccaaatgccc 488
>gb|CF485923.1|CF485923 POL1_34_C10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_34_C10_A002 5', mRNA sequence
Length = 521
Score = 184 bits (93), Expect = 7e-045
Identities = 123/133 (92%)
Strand = Plus / Minus
Query: 393 agaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgg 452
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 379 agaagccgtgcctcttcttctgcaacaagtgctgcgccaagtgcctgtgcgtgccgccgg 320
Query: 453 gcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcggggag 512
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 319 gcacctacggcaacaaggacacctgcccctgctacaacaactggaagaccaagagaggag 260
Query: 513 gccccaagtgccc 525
| ||||| |||||
Sbjct: 259 gtcccaaatgccc 247
>gb|CF489093.1|CF489093 POL1_54_H04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_54_H04_A002 3', mRNA sequence
Length = 561
Score = 184 bits (93), Expect = 7e-045
Identities = 123/133 (92%)
Strand = Plus / Plus
Query: 393 agaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgg 452
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 210 agaagccgtgcctcttcttctgcaacaagtgctgcgccaagtgcctgtgcgtgccgccgg 269
Query: 453 gcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcggggag 512
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 270 gcacctacggcaacaaggacacctgcccctgctacaacaactggaagaccaagagaggag 329
Query: 513 gccccaagtgccc 525
| ||||| |||||
Sbjct: 330 gtcccaaatgccc 342
>gb|CF489427.1|CF489427 POL1_57_B10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_B10_A002 5', mRNA sequence
Length = 713
Score = 184 bits (93), Expect = 7e-045
Identities = 123/133 (92%)
Strand = Plus / Plus
Query: 393 agaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgg 452
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 353 agaagccgtgcctcttcttctgcaacaagtgctgcgccaagtgcctgtgcgtgccgccgg 412
Query: 453 gcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcggggag 512
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 413 gcacctacggcaacaaggacacctgcccctgctacaacaactggaagaccaagagaggag 472
Query: 513 gccccaagtgccc 525
| ||||| |||||
Sbjct: 473 gtcccaaatgccc 485
>gb|CF488807.1|CF488807 POL1_52_G10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_52_G10_A002 3', mRNA sequence
Length = 617
Score = 176 bits (89), Expect = 2e-042
Identities = 122/133 (91%)
Strand = Plus / Plus
Query: 393 agaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgg 452
|||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 293 agaagccgtgcctcctcttctgcaacaagtgctgcgccaagtgcctgtgcgtgccgccgg 352
Query: 453 gcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcggggag 512
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 353 gcacctacggcaacaaggacacctgcccctgctacaacaactggaagaccaagagaggag 412
Query: 513 gccccaagtgccc 525
| ||||| |||||
Sbjct: 413 gtcccaaatgccc 425
>gb|CF484658.1|CF484658 POL1_26_E07.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_26_E07_A002 5', mRNA sequence
Length = 532
Score = 172 bits (87), Expect = 3e-041
Identities = 121/133 (90%)
Strand = Plus / Plus
Query: 393 agaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgg 452
||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||
Sbjct: 365 agaagccgtgcctcttcttctgcaacaagngctgcgccnagtgcctgtgcgtgccgccgg 424
Query: 453 gcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcggggag 512
||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||
Sbjct: 425 gcacctacggcaacaaggacacctgcccctgctacaacaactggaagaccaaaagaggag 484
Query: 513 gccccaagtgccc 525
| ||||| |||||
Sbjct: 485 gtcccaaatgccc 497
>gb|CW356428.1|CW356428 fsbb001f021i03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f021i03, DNA
sequence
Length = 676
Score = 145 bits (73), Expect = 6e-033
Identities = 88/93 (94%)
Strand = Plus / Minus
Query: 433 gtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctacaacaa 492
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 578 gtgcctgtgcgtgccgccgggcacctacggcaacaaggacacctgcccctgctacaacaa 519
Query: 493 ctggaagaccaagcggggaggccccaagtgccc 525
||||||||||||| | ||||| ||||| |||||
Sbjct: 518 ctggaagaccaagagaggaggtcccaaatgccc 486
>gb|CL168403.1|CL168403 104_366_10810792_148_31806_088 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10810792, DNA
sequence
Length = 737
Score = 137 bits (69), Expect = 1e-030
Identities = 144/169 (85%)
Strand = Plus / Plus
Query: 361 gtgcgcggagcggtgctcggcgacggcgtaccagaagccgtgcctcttcttctgccgcaa 420
||||||| |||||||||| |||| |||| ||||| | |||||| ||||||| |||
Sbjct: 144 gtgcgcgtcgcggtgctcgcagacgcagtacaagaaggcctgcctcaccttctgcaacaa 203
Query: 421 gtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctgccc 480
||||||||| ||||||| ||||||||||||||| ||||||||||||| | |||||||
Sbjct: 204 gtgctgcgccacgtgcctctgcgtgccgccgggcttctacggcaacaagggcgcctgccc 263
Query: 481 ctgctacaacaactggaagaccaagcggggaggccccaagtgcccctag 529
||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 264 ctgctacaacaactggaagaccaaggaaggagggcccaagtgcccctag 312
>gb|CW443839.1|CW443839 fsbb001f164c12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f164c12, DNA
sequence
Length = 721
Score = 137 bits (69), Expect = 1e-030
Identities = 144/169 (85%)
Strand = Plus / Plus
Query: 361 gtgcgcggagcggtgctcggcgacggcgtaccagaagccgtgcctcttcttctgccgcaa 420
||||||| |||||||||| |||| |||| ||||| | |||||| ||||||| |||
Sbjct: 175 gtgcgcgtcgcggtgctcgcagacgcagtacaagaaggcctgcctcaccttctgcaacaa 234
Query: 421 gtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctgccc 480
||||||||| ||||||| ||||||||||||||| ||||||||||||| | |||||||
Sbjct: 235 gtgctgcgccacgtgcctctgcgtgccgccgggcttctacggcaacaagggcgcctgccc 294
Query: 481 ctgctacaacaactggaagaccaagcggggaggccccaagtgcccctag 529
||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 295 ctgctacaacaactggaagaccaaggaaggagggcccaagtgcccctag 343
>gb|BE357918.1|BE357918 DG1_23_F06.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 650
Score = 137 bits (69), Expect = 1e-030
Identities = 144/169 (85%)
Strand = Plus / Plus
Query: 361 gtgcgcggagcggtgctcggcgacggcgtaccagaagccgtgcctcttcttctgccgcaa 420
||||||| |||||||||| |||| |||| ||||| | |||||| ||||||| |||
Sbjct: 220 gtgcgcgtcgcggtgctcgcagacgcagtacaagaaggcctgcctcaccttctgcaacaa 279
Query: 421 gtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctgccc 480
||||||||| ||||||| ||||||||||||||| ||||||||||||| | |||||||
Sbjct: 280 gtgctgcgccacgtgcctctgcgtgccgccgggcttctacggcaacaagggcgcctgccc 339
Query: 481 ctgctacaacaactggaagaccaagcggggaggccccaagtgcccctag 529
||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 340 ctgctacaacaactggaagaccaaggaaggagggcccaagtgcccctag 388
>gb|BE357990.1|BE357990 DG1_23_F06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 684
Score = 137 bits (69), Expect = 1e-030
Identities = 144/169 (85%)
Strand = Plus / Plus
Query: 361 gtgcgcggagcggtgctcggcgacggcgtaccagaagccgtgcctcttcttctgccgcaa 420
||||||| |||||||||| |||| |||| ||||| | |||||| ||||||| |||
Sbjct: 150 gtgcgcgtcgcggtgctcgcagacgcagtacaagaaggcctgcctcaccttctgcaacaa 209
Query: 421 gtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctgccc 480
||||||||| ||||||| ||||||||||||||| ||||||||||||| | |||||||
Sbjct: 210 gtgctgcgccacgtgcctctgcgtgccgccgggcttctacggcaacaagggcgcctgccc 269
Query: 481 ctgctacaacaactggaagaccaagcggggaggccccaagtgcccctag 529
||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 270 ctgctacaacaactggaagaccaaggaaggagggcccaagtgcccctag 318
>gb|BE358689.1|BE358689 DG1_31_E11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 551
Score = 137 bits (69), Expect = 1e-030
Identities = 144/169 (85%)
Strand = Plus / Plus
Query: 361 gtgcgcggagcggtgctcggcgacggcgtaccagaagccgtgcctcttcttctgccgcaa 420
||||||| |||||||||| |||| |||| ||||| | |||||| ||||||| |||
Sbjct: 224 gtgcgcgtcgcggtgctcgcagacgcagtacaagaaggcctgcctcaccttctgcaacaa 283
Query: 421 gtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctgccc 480
||||||||| ||||||| ||||||||||||||| ||||||||||||| | |||||||
Sbjct: 284 gtgctgcgccacgtgcctctgcgtgccgccgggcttctacggcaacaagggcgcctgccc 343
Query: 481 ctgctacaacaactggaagaccaagcggggaggccccaagtgcccctag 529
||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 344 ctgctacaacaactggaagaccaaggaaggagggcccaagtgcccctag 392
>gb|BE358567.1|BE358567 DG1_31_E11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 631
Score = 137 bits (69), Expect = 1e-030
Identities = 144/169 (85%)
Strand = Plus / Plus
Query: 361 gtgcgcggagcggtgctcggcgacggcgtaccagaagccgtgcctcttcttctgccgcaa 420
||||||| |||||||||| |||| |||| ||||| | |||||| ||||||| |||
Sbjct: 97 gtgcgcgtcgcggtgctcgcagacgcagtacaagaaggcctgcctcaccttctgcaacaa 156
Query: 421 gtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctgccc 480
||||||||| ||||||| ||||||||||||||| ||||||||||||| | |||||||
Sbjct: 157 gtgctgcgccacgtgcctctgcgtgccgccgggcttctacggcaacaagggcgcctgccc 216
Query: 481 ctgctacaacaactggaagaccaagcggggaggccccaagtgcccctag 529
||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 217 ctgctacaacaactggaagaccaaggaaggagggcccaagtgcccctag 265
>gb|CW301949.1|CW301949 104_786_11464467_116_35662_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464467, DNA
sequence
Length = 661
Score = 129 bits (65), Expect = 4e-028
Identities = 143/169 (84%)
Strand = Plus / Plus
Query: 361 gtgcgcggagcggtgctcggcgacggcgtaccagaagccgtgcctcttcttctgccgcaa 420
||||||| |||||||||| |||| |||| ||||| | |||||| ||||||| |||
Sbjct: 459 gtgcgcgtcgcggtgctcgcagacgcagtacaagaaggcctgcctcaccttctgcaacaa 518
Query: 421 gtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctgccc 480
||||||||| ||||||| ||||||||||||||| ||||||||||||| | |||||||
Sbjct: 519 gtgctgcgccacgtgcctctgcgtgccgccgggcttctacggcaacaagggcgcctgccc 578
Query: 481 ctgctacaacaactggaagaccaagcggggaggccccaagtgcccctag 529
||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct: 579 ctgctacaacaactggaagaccaaggaaggagggccccagtgcccctag 627
>gb|CW387256.1|CW387256 fsbb001f071i10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f071i10, DNA
sequence
Length = 696
Score = 123 bits (62), Expect = 2e-026
Identities = 119/138 (86%)
Strand = Plus / Plus
Query: 388 gtaccagaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgcc 447
|||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 297 gtacaagaagccgtgcctcttcttctgcaacaagtgctgcaacacgtgcctgtgcgtgcc 356
Query: 448 gccgggcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcg 507
| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 357 gtcgggctactacggcaacaagggcgagtgcccctgctacaacaactggaagaccaagcg 416
Query: 508 gggaggccccaagtgccc 525
|| || || ||||||||
Sbjct: 417 cgggggaccaaagtgccc 434
>gb|BE355997.1|BE355997 DG1_121_G12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 508
Score = 123 bits (62), Expect = 2e-026
Identities = 119/138 (86%)
Strand = Plus / Plus
Query: 388 gtaccagaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgcc 447
|||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 131 gtacaagaagccgtgcctcttcttctgcaacaagtgctgcaacacgtgcctgtgcgtgcc 190
Query: 448 gccgggcacctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcg 507
| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 191 gtcgggctactacggcaacaagggcgagtgcccctgctacaacaactggaagaccaagcg 250
Query: 508 gggaggccccaagtgccc 525
|| || || ||||||||
Sbjct: 251 cgggggaccaaagtgccc 268
>gb|CW356429.1|CW356429 fsbb001f021i03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f021i03, DNA
sequence
Length = 714
Score = 113 bits (57), Expect = 2e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 393 agaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgg 452
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 637 agaagccgtgcctcttcttctgcaacaagtgctgcgccaagtgcctgtgcgtgccgccgg 696
Query: 453 gcacctacggcaacaag 469
|||||||||||||||||
Sbjct: 697 gcacctacggcaacaag 713
>gb|CF485855.1|CF485855 POL1_34_C10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_34_C10_A002 3', mRNA sequence
Length = 693
Score = 103 bits (52), Expect = 2e-020
Identities = 67/72 (93%)
Strand = Plus / Minus
Query: 393 agaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgccgccgg 452
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 72 agaagccgtgcctcttcttctgcaacaagtgctgcgccaagtgcctgtgcgtgccgccgg 13
Query: 453 gcacctacggca 464
||||||||||||
Sbjct: 12 gcacctacggca 1
>gb|DR831474.2|DR831474 MT103 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 312
Score = 89.7 bits (45), Expect = 3e-016
Identities = 66/73 (90%)
Strand = Plus / Minus
Query: 457 ctacggcaacaagaacacctgcccctgctacaacaactggaagaccaagcggggaggccc 516
||||||||||||| | |||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 304 ctacggcaacaagggcgcctgcccctgctacaacaactggaagaccaaggaaggagggcc 245
Query: 517 caagtgcccctag 529
|||||||||||||
Sbjct: 244 caagtgcccctag 232
>gb|CW270223.1|CW270223 104_741_11402291_148_35328_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402291, DNA
sequence
Length = 622
Score = 81.8 bits (41), Expect = 7e-014
Identities = 104/125 (83%)
Strand = Plus / Plus
Query: 361 gtgcgcggagcggtgctcggcgacggcgtaccagaagccgtgcctcttcttctgccgcaa 420
||||||| |||||||||| |||| |||| ||||| | |||||| ||||||| |||
Sbjct: 498 gtgcgcgtcgcggtgctcgcagacgcagtacaagaaggcctgcctcaccttctgcaacaa 557
Query: 421 gtgctgcgcggcgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctgccc 480
||||||||| ||||||| ||||||||||||||| ||||||||||||| | |||||||
Sbjct: 558 gtgctgcgccacgtgcctctgcgtgccgccgggcttctacggcaacaagggcgcctgccc 617
Query: 481 ctgct 485
|||||
Sbjct: 618 ctgct 622
>gb|AI724401.1|AI724401 RHIZ1_36_C02.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 487
Score = 81.8 bits (41), Expect = 7e-014
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 461 ggcaacaagaacacctgcccctgctacaacaactggaagaccaagcggggaggccccaag 520
||||||||| | |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1 ggcaacaagggcgcctgcccctgctacaacaactggaagaccaaggaaggagggcccaag 60
Query: 521 tgcccctag 529
|||||||||
Sbjct: 61 tgcccctag 69
>gb|CW305081.1|CW305081 104_790_11466128_148_37437_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466128, DNA
sequence
Length = 677
Score = 73.8 bits (37), Expect = 2e-011
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 388 gtaccagaagccgtgcctcttcttctgccgcaagtgctgcgcggcgtgcctgtgcgtgcc 447
|||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 601 gtacaagaagccgtgcctcttcttctgcaacaagtgctgcaacacgtgcctgtgcgtgcc 660
Query: 448 gccgggcacctacggca 464
| ||||| ||||||||
Sbjct: 661 gtcgggctactacggca 677
>gb|CW226516.1|CW226516 104_664_11204928_116_37222_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204928, DNA
sequence
Length = 676
Score = 71.9 bits (36), Expect = 7e-011
Identities = 88/104 (84%), Gaps = 6/104 (5%)
Strand = Plus / Plus
Query: 87 cagccatgaagagggggagcccatggtcgctgcggctgctaatttgctgcgcggcaatgg 146
|||||||||||||| ||||||||||||||||| || ||| |||||||||| |||||||
Sbjct: 76 cagccatgaagaggaagagcccatggtcgctgctgcagctgctttgctgcgccgcaatgg 135
Query: 147 tggccatcgcgcttctcc---cccaacaaggaggccaggccgct 187
||| ||||||| |||| ||||||||||| |||||| ||||
Sbjct: 136 tgg---tcgcgctcctcctctcccaacaaggaagccaggtcgct 176
Score = 60.0 bits (30), Expect = 3e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 178 ccaggccgcttgtttcgtgccgacgccgggtccagctccggc 219
||||||||||| |||||||||| | |||||||||||||||||
Sbjct: 321 ccaggccgcttatttcgtgccgtcaccgggtccagctccggc 362
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 264 ctcctcggccagccaagcccagcgcattcccgcccccaatg 304
|||||| |||||||||||||| ||||||||| | |||||||
Sbjct: 392 ctcctccgccagccaagcccaacgcattcccactcccaatg 432
>gb|BE356045.1|BE356045 DG1_121_G12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 119
Score = 71.9 bits (36), Expect = 7e-011
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 432 cgtgcctgtgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctacaaca 491
||||||||||||||||| ||||| ||||||||||||| | ||||||||||||||||
Sbjct: 4 cgtgcctgtgcgtgccgtcgggctactacggcaacaagggcgagtgcccctgctacaaca 63
Query: 492 actggaagaccaagcg 507
||||||||||||||
Sbjct: 64 ggtggaagaccaagcg 79
>gb|BE598060.1|BE598060 PI1_65_B12.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 522
Score = 71.9 bits (36), Expect = 7e-011
Identities = 88/104 (84%), Gaps = 6/104 (5%)
Strand = Plus / Minus
Query: 87 cagccatgaagagggggagcccatggtcgctgcggctgctaatttgctgcgcggcaatgg 146
|||||||||||||| ||||||||||||||||| || ||| |||||||||| |||||||
Sbjct: 165 cagccatgaagaggaagagcccatggtcgctgctgcagctgctttgctgcgccgcaatgg 106
Query: 147 tggccatcgcgcttctcc---cccaacaaggaggccaggccgct 187
||| ||||||| |||| ||||||||||| |||||| ||||
Sbjct: 105 tgg---tcgcgctcctcctctcccaacaaggaagccaggtcgct 65
>gb|CW029423.1|CW029423 104_257_10499668_114_30401 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499668, DNA
sequence
Length = 684
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||| ||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 381 tgcgtcccgccgggcacctccggcaacgagaacgtctgcccctgctac 428
>gb|CW029597.1|CW029597 104_257_10499765_114_30401 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499765, DNA
sequence
Length = 839
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||| ||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 480 tgcgtcccgccgggcacctccggcaacgagaacgtctgcccctgctac 527
>gb|CW045294.1|CW045294 104_281_10509471_114_30238 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509471, DNA
sequence
Length = 648
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||| ||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 474 tgcgtcccgccgggcacctccggcaacgagaacgtctgcccctgctac 427
>gb|CW229857.1|CW229857 104_671_11207539_116_37267_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207539, DNA
sequence
Length = 675
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||| ||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 314 tgcgtcccgccgggcacctccggcaacgagaacgtctgcccctgctac 267
>gb|CW355698.1|CW355698 fsbb001f020h05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f020h05, DNA
sequence
Length = 416
Score = 56.0 bits (28), Expect = 4e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 388 gtaccagaagccgtgcctcttcttctgccgcaagtgctgc 427
|||| ||||||||||||||||||||||| ||||||||||
Sbjct: 335 gtacaagaagccgtgcctcttcttctgcaacaagtgctgc 374
>gb|BG049459.1|BG049459 OV1_20_C05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 360
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||| ||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 207 tgcgtcccgccgggcacctccggcaacgagaacgtctgcccctgctac 254
>gb|BG240293.1|BG240293 OV1_20_C05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 461
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||| ||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 310 tgcgtcccgccgggcacctccggcaacgagaacgtctgcccctgctac 357
>gb|BG240430.1|BG240430 OV1_29_G05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 518
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||| ||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 300 tgcgtcccgccgggcacctccggcaacgagaacgtctgcccctgctac 347
>gb|BG239846.1|BG239846 OV1_29_G05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 467
Score = 50.1 bits (25), Expect = 3e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 440 tgcgtgccgccgggcacctacggcaacaagaacacctgcccctgctac 487
||||| ||||||||||||| ||||||| ||||| ||||||||| |||
Sbjct: 129 tgcgtcccgccgggcacctccggcaacgagaacgtctgcccctgntac 176
>gb|CW387257.1|CW387257 fsbb001f071i10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f071i10, DNA
sequence
Length = 581
Score = 44.1 bits (22), Expect = 0.016
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 488 aacaactggaagaccaagcggggaggccccaagtgccc 525
|||||||||||||||||||| || || || ||||||||
Sbjct: 581 aacaactggaagaccaagcgcgggggaccaaagtgccc 544
>gb|BZ423273.1|BZ423273 id47d08.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id47d08 5', DNA sequence
Length = 783
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 565 tgttcaaaaaatcaaaagga 584
||||||||||||||||||||
Sbjct: 209 tgttcaaaaaatcaaaagga 228
>gb|CW046692.1|CW046692 104_284_10512285_114_30219 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512285, DNA
sequence
Length = 170
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 204 cgggtccagctccggcaccg 223
||||||||||||||||||||
Sbjct: 42 cgggtccagctccggcaccg 61
>gb|CW448961.1|CW448961 fsbb001f182n09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f182n09, DNA
sequence
Length = 595
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 204 cgggtccagctccggcaccg 223
||||||||||||||||||||
Sbjct: 343 cgggtccagctccggcaccg 362
>gb|BM318087.1|BM318087 PI1_78_D03.g9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 343
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 565 tgttcaaaaaatcaaaagga 584
||||||||||||||||||||
Sbjct: 215 tgttcaaaaaatcaaaagga 234
>gb|BM328734.1|BM328734 PIC1_25_H10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 645
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 565 tgttcaaaaaatcaaaagga 584
||||||||||||||||||||
Sbjct: 402 tgttcaaaaaatcaaaagga 421
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 232,647
Number of Sequences: 832831
Number of extensions: 232647
Number of successful extensions: 66539
Number of sequences better than 0.5: 47
Number of HSP's better than 0.5 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66461
Number of HSP's gapped (non-prelim): 70
length of query: 658
length of database: 491,359,669
effective HSP length: 19
effective length of query: 639
effective length of database: 475,535,880
effective search space: 303867427320
effective search space used: 303867427320
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)