BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2949673.2.1
(636 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN138045.1|CN138045 OX1_61_H04.b1_A002 Oxidatively-stres... 168 4e-040
gb|CD428180.1|CD428180 ETH1_28_C02.b1_A002 Ethylene-treated... 125 5e-027
gb|CD462540.1|CD462540 ETH1_38_C08.b1_A002 Ethylene-treated... 125 5e-027
gb|CF431001.1|CF431001 NIT1_4_D08.b1_A002 Nitrogen-deficien... 125 5e-027
gb|CX608350.1|CX608350 ANR1_38_C09.b1_A002 Anaerobic roots ... 125 5e-027
gb|CF432804.1|CF432804 NIT1_19_E10.b1_A002 Nitrogen-deficie... 113 2e-023
gb|CF429876.1|CF429876 PH1_25_A07.b1_A002 Phosphorous-defic... 101 8e-020
gb|CF430956.1|CF430956 NIT1_4_F06.b1_A002 Nitrogen-deficien... 101 8e-020
gb|CW027561.1|CW027561 104_254_10498588_116_30396 Sorghum m... 98 1e-018
gb|CW038410.1|CW038410 104_270_10504910_115_30386 Sorghum m... 98 1e-018
gb|CN131793.1|CN131793 OX1_2_G05.b1_A002 Oxidatively-stress... 98 1e-018
gb|CX622436.1|CX622436 GABR1_64_A04.b2_A002 GA- or brassino... 96 5e-018
gb|BF587706.1|BF587706 FM1_39_F09.g1_A003 Floral-Induced Me... 92 7e-017
gb|CW051229.1|CW051229 104_291_10515131_114_30192 Sorghum m... 88 1e-015
gb|CW279056.1|CW279056 104_753_11406877_116_35425_051 Sorgh... 88 1e-015
gb|CW294538.1|CW294538 104_775_11415242_116_36233_007 Sorgh... 88 1e-015
gb|CW294539.1|CW294539 104_775_11415242_148_36234_007 Sorgh... 88 1e-015
gb|CW122627.1|CW122627 104_501_11110773_116_34677_085 Sorgh... 86 5e-015
gb|CW465934.1|CW465934 fsbb001f216o21k0 Sorghum methylation... 86 5e-015
gb|CF427705.1|CF427705 PH1_10_G01.b1_A002 Phosphorous-defic... 86 5e-015
gb|CF431564.1|CF431564 NIT1_8_B02.b1_A002 Nitrogen-deficien... 86 5e-015
gb|CN134387.1|CN134387 OX1_26_C04.b1_A002 Oxidatively-stres... 86 5e-015
gb|BG159378.1|BG159378 OV2_7_A11.g1_A002 Ovary 2 (OV2) Sorg... 84 2e-014
gb|CN143114.1|CN143114 WOUND1_14_E12.b1_A002 Wounded leaves... 84 2e-014
gb|CX622493.1|CX622493 GABR1_64_G03.b2_A002 GA- or brassino... 84 2e-014
gb|CD229956.1|CD229956 SS1_40_H11.b1_A012 Salt-stressed see... 82 7e-014
gb|BZ422560.1|BZ422560 id55d04.b1 WGS-SbicolorF (DH5a methy... 80 3e-013
gb|CL196288.1|CL196288 104_422_10942954_114_32317_041 Sorgh... 80 3e-013
gb|CW027560.1|CW027560 104_254_10498588_114_30395 Sorghum m... 80 3e-013
gb|CW479571.1|CW479571 fsbb001f238c15k0 Sorghum methylation... 80 3e-013
gb|BG559907.1|BG559907 RHIZ2_75_B06.g1_A003 Rhizome2 (RHIZ2... 76 4e-012
gb|CN138126.1|CN138126 OX1_61_H04.g1_A002 Oxidatively-stres... 76 4e-012
gb|CN148779.1|CN148779 WOUND1_58_F02.g1_A002 Wounded leaves... 76 4e-012
gb|CW409779.1|CW409779 fsbb001f104d18f0 Sorghum methylation... 74 2e-011
gb|BG241324.1|BG241324 RHIZ2_49_A04.g1_A003 Rhizome2 (RHIZ2... 74 2e-011
gb|BG465898.1|BG465898 RHIZ2_46_A02.g1_A003 Rhizome2 (RHIZ2... 74 2e-011
gb|BG466123.1|BG466123 RHIZ2_48_H07.g1_A003 Rhizome2 (RHIZ2... 74 2e-011
gb|BI075108.1|BI075108 IP1_19_G01.g1_A002 Immature pannicle... 74 2e-011
gb|BG355941.2|BG355941 EM1_18_E06.g1_A002 Embryo 1 (EM1) So... 74 2e-011
gb|CX614740.1|CX614740 GABR1_16_B02.b1_A002 GA- or brassino... 74 2e-011
gb|CW406042.1|CW406042 fsbb001f098n24k0 Sorghum methylation... 72 7e-011
gb|CN148699.1|CN148699 WOUND1_58_F02.b1_A002 Wounded leaves... 72 7e-011
gb|BG052001.1|BG052001 RHIZ2_7_F11.g1_A003 Rhizome2 (RHIZ2)... 68 1e-009
gb|BM328692.1|BM328692 PIC1_25_D10.g1_A002 Pathogen-infecte... 66 4e-009
gb|CW032099.1|CW032099 104_261_10501183_114_30363 Sorghum m... 62 7e-008
gb|CW310290.1|CW310290 104_799_11469637_148_35749_057 Sorgh... 62 7e-008
gb|CW391632.1|CW391632 fsbb001f077n22k0 Sorghum methylation... 62 7e-008
gb|CN145887.1|CN145887 WOUND1_36_A11.b1_A002 Wounded leaves... 62 7e-008
gb|BE593454.1|BE593454 WS1_98_A11.b1_A002 Water-stressed 1 ... 60 3e-007
gb|CW107624.1|CW107624 104_478_11096696_148_34482_032 Sorgh... 58 1e-006
gb|CW479152.1|CW479152 fsbb001f237h02f0 Sorghum methylation... 58 1e-006
gb|CN137545.1|CN137545 OX1_58_B04.b1_A002 Oxidatively-stres... 54 2e-005
gb|CF480170.1|CF480170 POL1_64_D07.b1_A002 Pollen Sorghum b... 52 6e-005
gb|CF484412.1|CF484412 POL1_25_D12.b1_A002 Pollen Sorghum b... 52 6e-005
gb|CF487816.1|CF487816 POL1_46_C06.b1_A002 Pollen Sorghum b... 52 6e-005
gb|CN147510.1|CN147510 WOUND1_50_E09.b1_A002 Wounded leaves... 52 6e-005
gb|CN140813.1|CN140813 OX1_47_F12.b1_A002 Oxidatively-stres... 50 3e-004
gb|CW460719.1|CW460719 fsbb001f208a16k0 Sorghum methylation... 48 0.001
gb|BE352999.1|BE352999 DG1_2_B06.g1_A002 Dark Grown 1 (DG1)... 48 0.001
gb|BE357317.1|BE357317 DG1_148_G05.g1_A002 Dark Grown 1 (DG... 48 0.001
gb|BE358141.1|BE358141 DG1_24_F08.g1_A002 Dark Grown 1 (DG1... 48 0.001
gb|BF705012.1|BF705012 RHIZ2_1_C08.g1_A003 Rhizome2 (RHIZ2)... 48 0.001
gb|BG102446.1|BG102446 RHIZ2_33_A08.g1_A003 Rhizome2 (RHIZ2... 48 0.001
gb|BG357604.1|BG357604 OV2_32_A04.g1_A002 Ovary 2 (OV2) Sor... 48 0.001
gb|BG559736.1|BG559736 RHIZ2_73_A04.g1_A003 Rhizome2 (RHIZ2... 48 0.001
gb|BG739403.1|BG739403 EM1_82_E05.g1_A002 Embryo 1 (EM1) So... 48 0.001
gb|CD230229.1|CD230229 SS1_42_G04.b1_A012 Salt-stressed see... 48 0.001
gb|CD234642.1|CD234642 SS1_17_F09.b1_A012 Salt-stressed see... 48 0.001
gb|CD234679.1|CD234679 SS1_17_E08.b1_A012 Salt-stressed see... 48 0.001
gb|CD430130.1|CD430130 ETH1_17_H05.b1_A002 Ethylene-treated... 48 0.001
gb|CD464100.1|CD464100 ETH1_48_B11.g1_A002 Ethylene-treated... 48 0.001
gb|CN134090.1|CN134090 OX1_20_E03.b1_A002 Oxidatively-stres... 48 0.001
gb|CN137709.1|CN137709 OX1_59_B11.b1_A002 Oxidatively-stres... 48 0.001
gb|CN142753.1|CN142753 WOUND1_12_B02.b1_A002 Wounded leaves... 48 0.001
gb|CN149190.1|CN149190 WOUND1_61_F05.b1_A002 Wounded leaves... 48 0.001
gb|CN151965.1|CN151965 WOUND1_78_G12.g1_A002 Wounded leaves... 48 0.001
gb|CX608992.1|CX608992 ANR1_10_A12.b1_A002 Anaerobic roots ... 48 0.001
gb|CX609322.1|CX609322 ANR1_12_A12.b1_A002 Anaerobic roots ... 48 0.001
gb|CX610663.1|CX610663 ANR1_20_C10.b1_A002 Anaerobic roots ... 48 0.001
gb|CX611730.1|CX611730 ANR1_26_H06.b1_A002 Anaerobic roots ... 48 0.001
gb|CX612403.1|CX612403 GABR1_2_F05.b1_A002 GA- or brassinol... 48 0.001
gb|CX612412.1|CX612412 GABR1_2_G03.b1_A002 GA- or brassinol... 48 0.001
gb|CX612747.1|CX612747 GABR1_4_F03.b1_A002 GA- or brassinol... 48 0.001
gb|CX615244.1|CX615244 GABR1_19_B02.b1_A002 GA- or brassino... 48 0.001
gb|CX619063.1|CX619063 GABR1_43_G04.b1_A002 GA- or brassino... 48 0.001
gb|CX620190.1|CX620190 GABR1_50_H04.b1_A002 GA- or brassino... 48 0.001
gb|CW111668.1|CW111668 104_485_11104448_116_34540_030 Sorgh... 46 0.004
gb|CN148236.1|CN148236 WOUND1_55_B09.b1_A002 Wounded leaves... 44 0.016
gb|BZ781748.1|BZ781748 ii31c06.g1 WGS-SbicolorF (DH5a methy... 42 0.061
gb|CW222417.1|CW222417 104_657_11202363_116_37176_002 Sorgh... 42 0.061
gb|CN149533.1|CN149533 WOUND1_63_H02.b1_A002 Wounded leaves... 42 0.061
gb|CW071593.1|CW071593 104_323_10591587_114_30471 Sorghum m... 40 0.24
gb|CW217046.1|CW217046 104_650_11195446_148_37131_093 Sorgh... 40 0.24
gb|CW243962.1|CW243962 104_704_11220332_148_37583_070 Sorgh... 40 0.24
gb|CW404465.1|CW404465 fsbb001f096j22f0 Sorghum methylation... 40 0.24
gb|CW404466.1|CW404466 fsbb001f096j22k0 Sorghum methylation... 40 0.24
gb|CD203869.1|CD203869 HS1_2_H07.b1_A012 Heat-shocked seedl... 40 0.24
gb|CD225116.1|CD225116 CCC1_38_B06.b1_A007 Callus culture/c... 40 0.24
gb|CD227113.1|CD227113 CCC1_4_B10.b1_A007 Callus culture/ce... 40 0.24
gb|CD431354.1|CD431354 ETH1_8_D11.b1_A002 Ethylene-treated ... 40 0.24
gb|CN140557.1|CN140557 OX1_45_C11.b1_A002 Oxidatively-stres... 40 0.24
>gb|CN138045.1|CN138045 OX1_61_H04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_H04_A002 3', mRNA sequence
Length = 698
Score = 168 bits (85), Expect = 4e-040
Identities = 352/441 (79%)
Strand = Plus / Minus
Query: 196 atcttgctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgc 255
|||||||||||||||||||| | |||||||| ||||| ||||||||| |||| || |||
Sbjct: 498 atcttgctgcccgcgacgtcaatgacgaagcgatacctcacatcgttcttctcgagccgc 439
Query: 256 tggatggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgc 315
| ||| || || ||||||||||||||| || ||||| | || ||||||| || |||
Sbjct: 438 tcgatcgctgtgttgacgtagtccatctgcaccacctcaatgtcagcggtgacgccatgc 379
Query: 316 tcgccggcaaagtcgagcatggcctggcactccccgacgccgccgccggcactcccggcc 375
|| || || ||||| ||||| |||||||| || |||| | || || | ||||||||
Sbjct: 378 tctcctgcgaagtccagcatcgcctggcagtcggcgacactccccacgccgttcccggcc 319
Query: 376 acgcgcttcccgccggcgacgaggctgaaggcaggcacctggagcggcttggtgggcagg 435
|| ||||||||||||| || || | | | || |||| || |||||| || | ||| |
Sbjct: 318 acccgcttcccgccggtgatgatggcgtacgccggcagctccagcggcgtgcttggcgcg 259
Query: 436 ccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtgg 495
|||||||| |||||||| ||||| ||||| || || ||||||||||||||| ||||
Sbjct: 258 ccgacgaccaccatctgccccatgggcttcagtagcgccagcagcggcacgatctggtgc 199
Query: 496 tcggccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcg 555
| || |||||||||||||||| ||||||||| ||| |||| || ||| |||| ||| ||
Sbjct: 198 cccgctgacaccgtgtcgatgatgccgtccaacgtggccgctgctgccttcatttgcgcg 139
Query: 556 gggtcgcggctgaccaggaacgcgtcggcaccgaggcggccgagggcctcgtcccgcttg 615
| |||| ||||||||| |||||||||||| || ||||| ||||| |||||||| ||||||
Sbjct: 138 gcgtcgtggctgaccaagaacgcgtcggcgccaaggcgtccgagcgcctcgtcgcgcttg 79
Query: 616 cccagcgacgtgctgatgacg 636
|| |||||| ||||||||||
Sbjct: 78 ccgggcgacgagctgatgacg 58
>gb|CD428180.1|CD428180 ETH1_28_C02.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_28_C02_A002 3', mRNA sequence
Length = 639
Score = 125 bits (63), Expect = 5e-027
Identities = 135/159 (84%)
Strand = Plus / Minus
Query: 435 gccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtg 494
|||||||| |||||||| ||||| ||||| || || ||||||||||||||| |||||
Sbjct: 241 gccgacgatcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtg 182
Query: 495 gtcggccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctc 554
| || |||||||||||||||| |||||||| ||||| ||||||||| ||||||||||
Sbjct: 181 ccccgctgacaccgtgtcgatgatgccgtccatcgtgcctgccgccgccttcatctgctc 122
Query: 555 ggggtcgcggctgaccaggaacgcgtcggcaccgaggcg 593
|| |||||||||||||| |||| ||||||| || |||||
Sbjct: 121 ggtgtcgcggctgaccaagaactcgtcggcgccaaggcg 83
Score = 85.7 bits (43), Expect = 5e-015
Identities = 118/143 (82%)
Strand = Plus / Minus
Query: 202 ctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggatg 261
||||| ||||| || || ||||| ||||||||||| ||||||||||| || |||| |||
Sbjct: 474 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 415
Query: 262 gcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgccg 321
|| || |||||||||||||||| |||| ||| | ||||||||||| ||||||| ||
Sbjct: 414 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 355
Query: 322 gcaaagtcgagcatggcctggca 344
|| ||||| ||||| ||||||||
Sbjct: 354 gcgaagtccagcatcgcctggca 332
>gb|CD462540.1|CD462540 ETH1_38_C08.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_38_C08_A002 3', mRNA sequence
Length = 715
Score = 125 bits (63), Expect = 5e-027
Identities = 135/159 (84%)
Strand = Plus / Minus
Query: 435 gccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtg 494
|||||||| |||||||| ||||| ||||| || || ||||||||||||||| |||||
Sbjct: 329 gccgacgatcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtg 270
Query: 495 gtcggccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctc 554
| || |||||||||||||||| |||||||| ||||| ||||||||| ||||||||||
Sbjct: 269 ccccgctgacaccgtgtcgatgatgccgtccatcgtgcctgccgccgccttcatctgctc 210
Query: 555 ggggtcgcggctgaccaggaacgcgtcggcaccgaggcg 593
|| |||||||||||||| |||| ||||||| || |||||
Sbjct: 209 ggtgtcgcggctgaccaagaactcgtcggcgccaaggcg 171
Score = 85.7 bits (43), Expect = 5e-015
Identities = 118/143 (82%)
Strand = Plus / Minus
Query: 202 ctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggatg 261
||||| ||||| || || ||||| ||||||||||| ||||||||||| || |||| |||
Sbjct: 562 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 503
Query: 262 gcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgccg 321
|| || |||||||||||||||| |||| ||| | ||||||||||| ||||||| ||
Sbjct: 502 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 443
Query: 322 gcaaagtcgagcatggcctggca 344
|| ||||| ||||| ||||||||
Sbjct: 442 gcgaagtccagcatcgcctggca 420
>gb|CF431001.1|CF431001 NIT1_4_D08.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_4_D08_A002 3', mRNA sequence
Length = 580
Score = 125 bits (63), Expect = 5e-027
Identities = 135/159 (84%)
Strand = Plus / Minus
Query: 435 gccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtg 494
|||||||| |||||||| ||||| ||||| || || ||||||||||||||| |||||
Sbjct: 173 gccgacgatcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtg 114
Query: 495 gtcggccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctc 554
| || |||||||||||||||| |||||||| ||||| ||||||||| ||||||||||
Sbjct: 113 ccccgctgacaccgtgtcgatgatgccgtccatcgtgcctgccgccgccttcatctgctc 54
Query: 555 ggggtcgcggctgaccaggaacgcgtcggcaccgaggcg 593
|| |||||||||||||| |||| ||||||| || |||||
Sbjct: 53 ggtgtcgcggctgaccaagaactcgtcggcgccaaggcg 15
Score = 85.7 bits (43), Expect = 5e-015
Identities = 118/143 (82%)
Strand = Plus / Minus
Query: 202 ctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggatg 261
||||| ||||| || || ||||| ||||||||||| ||||||||||| || |||| |||
Sbjct: 406 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 347
Query: 262 gcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgccg 321
|| || |||||||||||||||| |||| ||| | ||||||||||| ||||||| ||
Sbjct: 346 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 287
Query: 322 gcaaagtcgagcatggcctggca 344
|| ||||| ||||| ||||||||
Sbjct: 286 gcgaagtccagcatcgcctggca 264
>gb|CX608350.1|CX608350 ANR1_38_C09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_38_C09_A002 3', mRNA sequence
Length = 598
Score = 125 bits (63), Expect = 5e-027
Identities = 135/159 (84%)
Strand = Plus / Minus
Query: 435 gccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtg 494
|||||||| |||||||| ||||| ||||| || || ||||||||||||||| |||||
Sbjct: 215 gccgacgatcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtg 156
Query: 495 gtcggccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctc 554
| || |||||||||||||||| |||||||| ||||| ||||||||| ||||||||||
Sbjct: 155 ccccgctgacaccgtgtcgatgatgccgtccatcgtgcctgccgccgccttcatctgctc 96
Query: 555 ggggtcgcggctgaccaggaacgcgtcggcaccgaggcg 593
|| |||||||||||||| |||| ||||||| || |||||
Sbjct: 95 ggtgtcgcggctgaccaagaactcgtcggcgccaaggcg 57
Score = 85.7 bits (43), Expect = 5e-015
Identities = 118/143 (82%)
Strand = Plus / Minus
Query: 202 ctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggatg 261
||||| ||||| || || ||||| ||||||||||| ||||||||||| || |||| |||
Sbjct: 448 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 389
Query: 262 gcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgccg 321
|| || |||||||||||||||| |||| ||| | ||||||||||| ||||||| ||
Sbjct: 388 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 329
Query: 322 gcaaagtcgagcatggcctggca 344
|| ||||| ||||| ||||||||
Sbjct: 328 gcgaagtccagcatcgcctggca 306
>gb|CF432804.1|CF432804 NIT1_19_E10.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_19_E10_A002 3', mRNA sequence
Length = 538
Score = 113 bits (57), Expect = 2e-023
Identities = 117/137 (85%)
Strand = Plus / Minus
Query: 435 gccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtg 494
|||||||| |||||||| ||||| ||||| || || ||||||||||||||| |||||
Sbjct: 137 gccgacgatcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtg 78
Query: 495 gtcggccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctc 554
| || |||||||||||||||| |||||||| ||||| ||||||||| ||||||||||
Sbjct: 77 ccccgctgacaccgtgtcgatgatgccgtccatcgtgcctgccgccgccttcatctgctc 18
Query: 555 ggggtcgcggctgacca 571
|| ||||||||||||||
Sbjct: 17 ggtgtcgcggctgacca 1
Score = 85.7 bits (43), Expect = 5e-015
Identities = 118/143 (82%)
Strand = Plus / Minus
Query: 202 ctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggatg 261
||||| ||||| || || ||||| ||||||||||| ||||||||||| || |||| |||
Sbjct: 370 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 311
Query: 262 gcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgccg 321
|| || |||||||||||||||| |||| ||| | ||||||||||| ||||||| ||
Sbjct: 310 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 251
Query: 322 gcaaagtcgagcatggcctggca 344
|| ||||| ||||| ||||||||
Sbjct: 250 gcgaagtccagcatcgcctggca 228
>gb|CF429876.1|CF429876 PH1_25_A07.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_25_A07_A002 3', mRNA sequence
Length = 542
Score = 101 bits (51), Expect = 8e-020
Identities = 105/123 (85%)
Strand = Plus / Minus
Query: 445 accatctggcccatcggcttgagcaggtccagcagcggcacgacagggtggtcggccgac 504
|||||||| ||||| ||||| || || ||||||||||||||| ||||| | || |||
Sbjct: 123 accatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtgccccgctgac 64
Query: 505 accgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcggggtcgcgg 564
||||||||||||| |||||||| ||||| ||||||||| |||||||||||| |||||||
Sbjct: 63 accgtgtcgatgatgccgtccatcgtgcctgccgccgccttcatctgctcggtgtcgcgg 4
Query: 565 ctg 567
|||
Sbjct: 3 ctg 1
Score = 71.9 bits (36), Expect = 7e-011
Identities = 118/144 (81%), Gaps = 1/144 (0%)
Strand = Plus / Minus
Query: 202 ctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggatg 261
||||| ||||| || || ||||| ||||||||||| ||||||||||| || |||| |||
Sbjct: 367 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 308
Query: 262 gcggtattgacgtagtccatcccgacgacctccacatccgcggt-gatcccgtgctcgcc 320
|| || |||||||||||||||| |||| ||| | |||||||| ||| ||||||| ||
Sbjct: 307 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtggatgccgtgctgccc 248
Query: 321 ggcaaagtcgagcatggcctggca 344
|| ||||| ||||| ||||||||
Sbjct: 247 cgcgaagtccagcatcgcctggca 224
>gb|CF430956.1|CF430956 NIT1_4_F06.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_4_F06_A002 3', mRNA sequence
Length = 540
Score = 101 bits (51), Expect = 8e-020
Identities = 114/135 (84%)
Strand = Plus / Minus
Query: 435 gccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtg 494
|||||||| |||||||| ||||| ||||| || || ||||||||||||||| |||||
Sbjct: 135 gccgacgatcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtg 76
Query: 495 gtcggccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctc 554
| || |||||||||||||||| |||||||| ||||| ||||||||| |||||||| |
Sbjct: 75 ccccgctgacaccgtgtcgatgatgccgtccatcgtgcctgccgccgccttcatctgccc 16
Query: 555 ggggtcgcggctgac 569
|| ||||||||||||
Sbjct: 15 ggtgtcgcggctgac 1
Score = 85.7 bits (43), Expect = 5e-015
Identities = 118/143 (82%)
Strand = Plus / Minus
Query: 202 ctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggatg 261
||||| ||||| || || ||||| ||||||||||| ||||||||||| || |||| |||
Sbjct: 368 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 309
Query: 262 gcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgccg 321
|| || |||||||||||||||| |||| ||| | ||||||||||| ||||||| ||
Sbjct: 308 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 249
Query: 322 gcaaagtcgagcatggcctggca 344
|| ||||| ||||| ||||||||
Sbjct: 248 gcgaagtccagcatcgcctggca 226
>gb|CW027561.1|CW027561 104_254_10498588_116_30396 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498588, DNA
sequence
Length = 820
Score = 97.6 bits (49), Expect = 1e-018
Identities = 268/341 (78%)
Strand = Plus / Plus
Query: 196 atcttgctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgc 255
|||||||||||||||||||| | |||||||| ||||| ||||||||| |||| || |||
Sbjct: 208 atcttgctgcccgcgacgtcaatgacgaagcgatacctcacatcgttcttctcgagccgc 267
Query: 256 tggatggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgc 315
| ||| || || ||||||||||||||| || ||||| | || ||||||| || |||
Sbjct: 268 tcgatcgctgtgttgacgtagtccatctgcaccacctcaatgtcagcggtgacgccatgc 327
Query: 316 tcgccggcaaagtcgagcatggcctggcactccccgacgccgccgccggcactcccggcc 375
|| || || ||||| ||||| |||||||| || |||| | || || | ||||||||
Sbjct: 328 tctcctgcgaagtccagcatcgcctggcagtcggcgacactccccacgccgttcccggcc 387
Query: 376 acgcgcttcccgccggcgacgaggctgaaggcaggcacctggagcggcttggtgggcagg 435
|| ||||||||||||| || || | | | || |||| || |||||| || | ||| |
Sbjct: 388 acccgcttcccgccggtgatgatggcgtacgccggcagctccagcggcgtgcttggcgcg 447
Query: 436 ccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtgg 495
|||||||| |||||||| ||||| ||||| || || ||||||||||||||| ||||
Sbjct: 448 ccgacgaccaccatctgccccatgggcttcagtagcgccagcagcggcacgatctggtgc 507
Query: 496 tcggccgacaccgtgtcgatgacgccgtccaaggtgcccgc 536
| || |||||||||||||||| ||||||||| ||| ||||
Sbjct: 508 cccgctgacaccgtgtcgatgatgccgtccaacgtggccgc 548
Score = 79.8 bits (40), Expect = 3e-013
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 545 tcatctgctcggggtcgcggctgaccaggaacgcgtcggcaccgaggcggccgagggcct 604
|||| ||| ||| |||| ||||||||| |||||||||||| || ||||| ||||| ||||
Sbjct: 716 tcatttgcgcggcgtcgtggctgaccaagaacgcgtcggcgcccaggcgtccgagcgcct 775
Query: 605 cgtcccgcttgcccagcgacgtgctgatgacg 636
|||| |||||||| |||||| ||||||||||
Sbjct: 776 cgtcgcgcttgccgggcgacgagctgatgacg 807
>gb|CW038410.1|CW038410 104_270_10504910_115_30386 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504910, DNA
sequence
Length = 636
Score = 97.6 bits (49), Expect = 1e-018
Identities = 268/341 (78%)
Strand = Plus / Plus
Query: 196 atcttgctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgc 255
|||||||||||||||||||| | |||||||| ||||| ||||||||| |||| || |||
Sbjct: 209 atcttgctgcccgcgacgtcaatgacgaagcgatacctcacatcgttcttctcgagccgc 268
Query: 256 tggatggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgc 315
| ||| || || ||||||||||||||| || ||||| | || ||||||| || |||
Sbjct: 269 tcgatcgctgtgttgacgtagtccatctgcaccacctcaatgtcagcggtgacgccatgc 328
Query: 316 tcgccggcaaagtcgagcatggcctggcactccccgacgccgccgccggcactcccggcc 375
|| || || ||||| ||||| |||||||| || |||| | || || | ||||||||
Sbjct: 329 tctcctgcgaagtccagcatcgcctggcagtcggcgacactccccacgccgttcccggcc 388
Query: 376 acgcgcttcccgccggcgacgaggctgaaggcaggcacctggagcggcttggtgggcagg 435
|| ||||||||||||| || || | | | || |||| || |||||| || | ||| |
Sbjct: 389 acccgcttcccgccggtgatgatggcgtacgccggcagctccagcggcgtgcttggcgcg 448
Query: 436 ccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtgg 495
|||||||| |||||||| ||||| ||||| || || ||||||||||||||| ||||
Sbjct: 449 ccgacgaccaccatctgccccatgggcttcagtagcgccagcagcggcacgatctggtgc 508
Query: 496 tcggccgacaccgtgtcgatgacgccgtccaaggtgcccgc 536
| || |||||||||||||||| ||||||||| ||| ||||
Sbjct: 509 cccgctgacaccgtgtcgatgatgccgtccaacgtggccgc 549
>gb|CN131793.1|CN131793 OX1_2_G05.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_2_G05_A002 3', mRNA sequence
Length = 576
Score = 97.6 bits (49), Expect = 1e-018
Identities = 268/341 (78%)
Strand = Plus / Minus
Query: 196 atcttgctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgc 255
|||||||||||||||||||| | |||||||| ||||| ||||||||| |||| || |||
Sbjct: 360 atcttgctgcccgcgacgtcaatgacgaagcgatacctcacatcgttcttctcgagccgc 301
Query: 256 tggatggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgc 315
| ||| || || ||||||||||||||| || ||||| | || ||||||| || |||
Sbjct: 300 tcgatcgctgtgttgacgtagtccatctgcaccacctcaatgtcagcggtgacgccatgc 241
Query: 316 tcgccggcaaagtcgagcatggcctggcactccccgacgccgccgccggcactcccggcc 375
|| || || ||||| ||||| |||||||| || |||| | || || | ||||||||
Sbjct: 240 tctcctgcgaagtccagcatcgcctggcagtcggcgacactccccacgccgttcccggcc 181
Query: 376 acgcgcttcccgccggcgacgaggctgaaggcaggcacctggagcggcttggtgggcagg 435
|| ||||||||||||| || || | | | || |||| || |||||| || | ||| |
Sbjct: 180 acccgcttcccgccggtgatgatggcgtacgccggcagctccagcggcgtgcttggcgcg 121
Query: 436 ccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtgg 495
|||||||| |||||||| ||||| ||||| || || ||||||||||||||| ||||
Sbjct: 120 ccgacgaccaccatctgccccatgggcttcagtagcgccagcagcggcacgatctggtgc 61
Query: 496 tcggccgacaccgtgtcgatgacgccgtccaaggtgcccgc 536
| || |||||||||||||||| ||||||||| ||| ||||
Sbjct: 60 cccgctgacaccgtgtcgatgatgccgtccaacgtggccgc 20
>gb|CX622436.1|CX622436 GABR1_64_A04.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_64_A04_A002 3', mRNA sequence
Length = 651
Score = 95.6 bits (48), Expect = 5e-018
Identities = 306/392 (78%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| ||||||||||| | || |||||| |||| || |||| |||
Sbjct: 430 gctgccggcgacgtcgatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgat 371
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || |||| |||||||||| || ||| ||||| || ||| ||| ||||||| ||
Sbjct: 370 cgccgtgttgaggtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccc 311
Query: 321 ggcaaagtcgagcatggcctggcactccccgacgccgccgccggcactcccggccacgcg 380
|| || || |||||||||||||| ||||||||| |||| || |||| |||||||
Sbjct: 310 cgcgaactcaagcatggcctggcagtccccgacgttgccgacgctgttcccagccacgcc 251
Query: 381 cttcccgccggcgacgaggctgaaggcaggcacctggagcggcttggtgggcaggccgac 440
||||||||| | ||||| | | | || |||| || ||||||||| | ||| || ||
Sbjct: 250 cttcccgcccgggacgatggcgtacgccggcagctctagcggcttgctcggccctcccac 191
Query: 441 gacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtggtcggc 500
||| |||||||| |||| |||||| ||||| | ||||| ||| || ||||| ||
Sbjct: 190 gaccaccatctgccccaacggcttcagcagcgcaagcagtggcgtgatcgggtgccacgc 131
Query: 501 cgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcggggtc 560
||| ||||||||||||| |||||||| |||||||| ||||||| |||||| ||| |||||
Sbjct: 130 cgataccgtgtcgatgatgccgtccatggtgcccgtcgccgccttcatctcctccgggtc 71
Query: 561 gcggctgaccaggaacgcgtcggcaccgaggc 592
||||||| || |||| |||| || |||||||
Sbjct: 70 ccggctgatcaagaactcgtccgcgccgaggc 39
>gb|BF587706.1|BF587706 FM1_39_F09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 614
Score = 91.7 bits (46), Expect = 7e-017
Identities = 82/94 (87%)
Strand = Plus / Minus
Query: 499 gccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcgggg 558
||||||||||||||||||| |||||||| |||||||| ||||||| |||||| ||| |||
Sbjct: 135 gccgacaccgtgtcgatgatgccgtccatggtgcccgtcgccgccttcatctcctccggg 76
Query: 559 tcgcggctgaccaggaacgcgtcggcaccgaggc 592
|| ||||||| || |||| |||| || |||||||
Sbjct: 75 tcccggctgatcaagaactcgtccgcgccgaggc 42
Score = 73.8 bits (37), Expect = 2e-011
Identities = 151/189 (79%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| ||||||||||| | ||| || ||| |||| || |||| ||
Sbjct: 433 gctgccggcgacgtcgatgacgaagcggtagcggacgtcattcttctcgagccgctccat 374
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| || ||||||||| || ||| ||| ||||||| ||
Sbjct: 373 cgccgtgttgacgtagtccatcttgatgacctccacctcggcgccgatgccgtgcttccc 314
Query: 321 ggcaaagtcgagcatggcctggcactccccgacgccgccgccggcactcccggccacgcg 380
|| || || |||||||||||||| |||||||||| |||| || |||| |||||||
Sbjct: 313 cgcgaactcaagcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcc 254
Query: 381 cttcccgcc 389
|||||||||
Sbjct: 253 cttcccgcc 245
>gb|CW051229.1|CW051229 104_291_10515131_114_30192 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515131, DNA
sequence
Length = 458
Score = 87.7 bits (44), Expect = 1e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 193 ccaatcttgctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctagg 252
|||| ||||||||| ||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 440 ccaagcttgctgcctgcgacgtcgacaatgaaatggtacctgacatcgttcctctctagt 381
Query: 253 cgctggat 260
||||||||
Sbjct: 380 cgctggat 373
>gb|CW279056.1|CW279056 104_753_11406877_116_35425_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11406877, DNA
sequence
Length = 603
Score = 87.7 bits (44), Expect = 1e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 193 ccaatcttgctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctagg 252
|||| ||||||||| ||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 447 ccaagcttgctgcctgcgacgtcgacaatgaaatggtacctgacatcgttcctctctagt 388
Query: 253 cgctggat 260
||||||||
Sbjct: 387 cgctggat 380
>gb|CW294538.1|CW294538 104_775_11415242_116_36233_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415242, DNA
sequence
Length = 760
Score = 87.7 bits (44), Expect = 1e-015
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 193 ccaatcttgctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctagg 252
|||| ||||||||| ||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 315 ccaagcttgctgcctgcgacgtcgacaatgaaatggtacctgacatcgttcctctctagt 374
Query: 253 cgctggat 260
||||||||
Sbjct: 375 cgctggat 382
>gb|CW294539.1|CW294539 104_775_11415242_148_36234_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415242, DNA
sequence
Length = 724
Score = 87.7 bits (44), Expect = 1e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 193 ccaatcttgctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctagg 252
|||| ||||||||| ||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 518 ccaagcttgctgcctgcgacgtcgacaatgaaatggtacctgacatcgttcctctctagt 459
Query: 253 cgctggat 260
||||||||
Sbjct: 458 cgctggat 451
>gb|CW122627.1|CW122627 104_501_11110773_116_34677_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110773, DNA
sequence
Length = 621
Score = 85.7 bits (43), Expect = 5e-015
Identities = 118/143 (82%)
Strand = Plus / Plus
Query: 202 ctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggatg 261
||||| ||||| || || ||||| ||||||||||| ||||||||||| || |||| |||
Sbjct: 105 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 164
Query: 262 gcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgccg 321
|| || |||||||||||||||| |||| ||| | ||||||||||| ||||||| ||
Sbjct: 165 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 224
Query: 322 gcaaagtcgagcatggcctggca 344
|| ||||| ||||| ||||||||
Sbjct: 225 gcgaagtccagcatcgcctggca 247
Score = 73.8 bits (37), Expect = 2e-011
Identities = 91/109 (83%)
Strand = Plus / Plus
Query: 435 gccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtg 494
|||||||| |||||||| ||||| ||||| || || ||||||||||||||| |||||
Sbjct: 338 gccgacgatcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtg 397
Query: 495 gtcggccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgcc 543
| || |||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 398 ccccgctgacaccgtgtcgatgatgccgtccatcgtgcctgccgccgcc 446
Score = 42.1 bits (21), Expect = 0.061
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 545 tcatctgctcggggtcgcggctgac 569
|||||||||||| ||||||||||||
Sbjct: 558 tcatctgctcggtgtcgcggctgac 582
>gb|CW465934.1|CW465934 fsbb001f216o21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f216o21, DNA
sequence
Length = 581
Score = 85.7 bits (43), Expect = 5e-015
Identities = 118/143 (82%)
Strand = Plus / Plus
Query: 202 ctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggatg 261
||||| ||||| || || ||||| ||||||||||| ||||||||||| || |||| |||
Sbjct: 84 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 143
Query: 262 gcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgccg 321
|| || |||||||||||||||| |||| ||| | ||||||||||| ||||||| ||
Sbjct: 144 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 203
Query: 322 gcaaagtcgagcatggcctggca 344
|| ||||| ||||| ||||||||
Sbjct: 204 gcgaagtccagcatcgcctggca 226
Score = 73.8 bits (37), Expect = 2e-011
Identities = 91/109 (83%)
Strand = Plus / Plus
Query: 435 gccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtg 494
|||||||| |||||||| ||||| ||||| || || ||||||||||||||| |||||
Sbjct: 317 gccgacgatcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtg 376
Query: 495 gtcggccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgcc 543
| || |||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 377 ccccgctgacaccgtgtcgatgatgccgtccatcgtgcctgccgccgcc 425
Score = 50.1 bits (25), Expect = 3e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 545 tcatctgctcggggtcgcggctgaccaggaacgcgtc 581
|||||||||||| |||||||||||||| |||| ||||
Sbjct: 537 tcatctgctcggtgtcgcggctgaccaagaactcgtc 573
>gb|CF427705.1|CF427705 PH1_10_G01.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_10_G01_A002 3', mRNA sequence
Length = 402
Score = 85.7 bits (43), Expect = 5e-015
Identities = 118/143 (82%)
Strand = Plus / Minus
Query: 202 ctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggatg 261
||||| ||||| || || ||||| ||||||||||| ||||||||||| || |||| |||
Sbjct: 238 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 179
Query: 262 gcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgccg 321
|| || |||||||||||||||| |||| ||| | ||||||||||| ||||||| ||
Sbjct: 178 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 119
Query: 322 gcaaagtcgagcatggcctggca 344
|| ||||| ||||| ||||||||
Sbjct: 118 gcgaagtccagcatcgcctggca 96
>gb|CF431564.1|CF431564 NIT1_8_B02.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_8_B02_A002 3', mRNA sequence
Length = 485
Score = 85.7 bits (43), Expect = 5e-015
Identities = 118/143 (82%)
Strand = Plus / Minus
Query: 202 ctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggatg 261
||||| ||||| || || ||||| ||||||||||| ||||||||||| || |||| |||
Sbjct: 312 ctgccagcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 253
Query: 262 gcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgccg 321
|| || |||||||||||||||| |||| ||| | ||||||||||| ||||||| ||
Sbjct: 252 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 193
Query: 322 gcaaagtcgagcatggcctggca 344
|| ||||| ||||| ||||||||
Sbjct: 192 gcgaagtccagcatcgcctggca 170
Score = 46.1 bits (23), Expect = 0.004
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 435 gccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtg 494
|||||||| |||||||| ||||| ||||| || || ||||||||||||||| |||||
Sbjct: 79 gccgacgatcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtg 20
Query: 495 gtcggccgacaccgtgtcg 513
| || ||||||||||||
Sbjct: 19 ccccgctgacaccgtgtcg 1
>gb|CN134387.1|CN134387 OX1_26_C04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_26_C04_A002 3', mRNA sequence
Length = 745
Score = 85.7 bits (43), Expect = 5e-015
Identities = 118/143 (82%)
Strand = Plus / Minus
Query: 202 ctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggatg 261
||||| ||||| || || ||||| ||||||||||| ||||||||||| || |||| |||
Sbjct: 582 ctgccggcgacatcaacgacgaaccggtacctgacgtcgttcctctccagccgctccatg 523
Query: 262 gcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgccg 321
|| || |||||||||||||||| |||| ||| | ||||||||||| ||||||| ||
Sbjct: 522 gccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgcccc 463
Query: 322 gcaaagtcgagcatggcctggca 344
|| ||||| ||||| ||||||||
Sbjct: 462 gcgaagtccagcatcgcctggca 440
Score = 73.8 bits (37), Expect = 2e-011
Identities = 91/109 (83%)
Strand = Plus / Minus
Query: 435 gccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtg 494
|||||||| |||||||| ||||| ||||| || || ||||||||||||||| |||||
Sbjct: 349 gccgacgatcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtg 290
Query: 495 gtcggccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgcc 543
| || |||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 289 ccccgctgacaccgtgtcgatgatgccgtccatcgtgcctgccgccgcc 241
Score = 58.0 bits (29), Expect = 1e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 545 tcatctgctcggggtcgcggctgaccaggaacgcgtcggcaccgaggcg 593
|||||||||||| |||||||||||||| |||| ||||||| || |||||
Sbjct: 129 tcatctgctcggtgtcgcggctgaccaagaactcgtcggcgccaaggcg 81
>gb|BG159378.1|BG159378 OV2_7_A11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 591
Score = 83.8 bits (42), Expect = 2e-014
Identities = 81/94 (86%)
Strand = Plus / Minus
Query: 499 gccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcgggg 558
||||| ||||||||||||| |||||||| |||||||| ||||||| |||||| ||| |||
Sbjct: 113 gccgataccgtgtcgatgatgccgtccatggtgcccgtcgccgccttcatctcctccggg 54
Query: 559 tcgcggctgaccaggaacgcgtcggcaccgaggc 592
|| ||||||| || |||| |||| || |||||||
Sbjct: 53 tcccggctgatcaagaactcgtccgcgccgaggc 20
Score = 73.8 bits (37), Expect = 2e-011
Identities = 151/189 (79%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| ||||||||||| | || |||||| |||| || |||| |||
Sbjct: 411 gctgccggcgacgtcgatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgat 352
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| || ||| ||||| || ||| ||| ||||||| ||
Sbjct: 351 cgccgtgttgacgtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccc 292
Query: 321 ggcaaagtcgagcatggcctggcactccccgacgccgccgccggcactcccggccacgcg 380
|| || || |||||||||||||| |||||||||| |||| || |||| |||||||
Sbjct: 291 cgcgaactcaagcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcc 232
Query: 381 cttcccgcc 389
|||||||||
Sbjct: 231 cttcccgcc 223
>gb|CN143114.1|CN143114 WOUND1_14_E12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_14_E12_A002 3', mRNA sequence
Length = 638
Score = 83.8 bits (42), Expect = 2e-014
Identities = 81/94 (86%)
Strand = Plus / Minus
Query: 499 gccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcgggg 558
||||| ||||||||||||| |||||||| |||||||| ||||||| |||||| ||| |||
Sbjct: 110 gccgataccgtgtcgatgatgccgtccatggtgcccgtcgccgccttcatctcctccggg 51
Query: 559 tcgcggctgaccaggaacgcgtcggcaccgaggc 592
|| ||||||| || |||| |||| || |||||||
Sbjct: 50 tcccggctgatcaagaactcgtccgcgccgaggc 17
Score = 73.8 bits (37), Expect = 2e-011
Identities = 151/189 (79%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| ||||||||||| | || |||||| |||| || |||| |||
Sbjct: 408 gctgccggcgacgtcgatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgat 349
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| || ||| ||||| || ||| ||| ||||||| ||
Sbjct: 348 cgccgtgttgacgtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccc 289
Query: 321 ggcaaagtcgagcatggcctggcactccccgacgccgccgccggcactcccggccacgcg 380
|| || || |||||||||||||| |||||||||| |||| || |||| |||||||
Sbjct: 288 cgcgaactcaagcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcc 229
Query: 381 cttcccgcc 389
|||||||||
Sbjct: 228 cttcccgcc 220
>gb|CX622493.1|CX622493 GABR1_64_G03.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_64_G03_A002 3', mRNA sequence
Length = 746
Score = 83.8 bits (42), Expect = 2e-014
Identities = 81/94 (86%)
Strand = Plus / Minus
Query: 499 gccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcgggg 558
||||| ||||||||||||| |||||||| |||||||| ||||||| |||||| ||| |||
Sbjct: 212 gccgataccgtgtcgatgatgccgtccatggtgcccgtcgccgccttcatctcctccggg 153
Query: 559 tcgcggctgaccaggaacgcgtcggcaccgaggc 592
|| ||||||| || |||| |||| || |||||||
Sbjct: 152 tcccggctgatcaagaactcgtccgcgccgaggc 119
Score = 73.8 bits (37), Expect = 2e-011
Identities = 151/189 (79%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| ||||||||||| | || |||||| |||| || |||| |||
Sbjct: 510 gctgccggcgacgtcgatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgat 451
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| || ||| ||||| || ||| ||| ||||||| ||
Sbjct: 450 cgccgtgttgacgtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccc 391
Query: 321 ggcaaagtcgagcatggcctggcactccccgacgccgccgccggcactcccggccacgcg 380
|| || || |||||||||||||| |||||||||| |||| || |||| |||||||
Sbjct: 390 cgcgaactcaagcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcc 331
Query: 381 cttcccgcc 389
|||||||||
Sbjct: 330 cttcccgcc 322
>gb|CD229956.1|CD229956 SS1_40_H11.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_40_H11_A012 3', mRNA sequence
Length = 635
Score = 81.8 bits (41), Expect = 7e-014
Identities = 152/189 (80%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| ||||||||||| | ||| || ||| |||| || |||| |||
Sbjct: 363 gctgccggcgacgtcgatgacgaagcggtagcggacgtcattcttctcgagccgctcgat 304
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| || ||||||||| || ||| ||| ||||||| ||
Sbjct: 303 cgccgtgttgacgtagtccatcttgatgacctccacctcggcgccgatgccgtgcttccc 244
Query: 321 ggcaaagtcgagcatggcctggcactccccgacgccgccgccggcactcccggccacgcg 380
|| || || |||||||||||||| |||||||||| |||| || |||| |||||||
Sbjct: 243 cgcgaactcaagcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcc 184
Query: 381 cttcccgcc 389
|||||||||
Sbjct: 183 cttcccgcc 175
Score = 60.0 bits (30), Expect = 3e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 499 gccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcgggg 558
||||||||||||||||||| |||||||| ||||||| |||| || |||||| ||| |||
Sbjct: 65 gccgacaccgtgtcgatgatgccgtccatggtgcccatcgccaccttcatctcctccggg 6
Query: 559 tc 560
||
Sbjct: 5 tc 4
>gb|BZ422560.1|BZ422560 id55d04.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone id55d04 5', DNA sequence
Length = 439
Score = 79.8 bits (40), Expect = 3e-013
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 545 tcatctgctcggggtcgcggctgaccaggaacgcgtcggcaccgaggcggccgagggcct 604
|||| ||| ||| |||| ||||||||| |||||||||||| || ||||| ||||| ||||
Sbjct: 105 tcatttgcgcggcgtcgtggctgaccaagaacgcgtcggcgccaaggcgtccgagcgcct 164
Query: 605 cgtcccgcttgcccagcgacgtgctgatgacg 636
|||| |||||||| |||||| ||||||||||
Sbjct: 165 cgtcgcgcttgccgggcgacgagctgatgacg 196
>gb|CL196288.1|CL196288 104_422_10942954_114_32317_041 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942954, DNA
sequence
Length = 461
Score = 79.8 bits (40), Expect = 3e-013
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 545 tcatctgctcggggtcgcggctgaccaggaacgcgtcggcaccgaggcggccgagggcct 604
|||| ||| ||| |||| ||||||||| |||||||||||| || ||||| ||||| ||||
Sbjct: 191 tcatttgcgcggcgtcgtggctgaccaagaacgcgtcggcgccaaggcgtccgagcgcct 250
Query: 605 cgtcccgcttgcccagcgacgtgctgatgacg 636
|||| |||||||| |||||| ||||||||||
Sbjct: 251 cgtcgcgcttgccgggcgacgagctgatgacg 282
>gb|CW027560.1|CW027560 104_254_10498588_114_30395 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498588, DNA
sequence
Length = 827
Score = 79.8 bits (40), Expect = 3e-013
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 545 tcatctgctcggggtcgcggctgaccaggaacgcgtcggcaccgaggcggccgagggcct 604
|||| ||| ||| |||| ||||||||| |||||||||||| || ||||| ||||| ||||
Sbjct: 541 tcatttgcgcggcgtcgtggctgaccaagaacgcgtcggcgccaaggcgtccgagcgcct 482
Query: 605 cgtcccgcttgcccagcgacgtgctgatgacg 636
|||| |||||||| |||||| ||||||||||
Sbjct: 481 cgtcgcgcttgccgggcgacgagctgatgacg 450
Score = 67.9 bits (34), Expect = 1e-009
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 435 gccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtg 494
||||||||| |||||||| ||||| ||||| || || ||||||||||||||| ||||
Sbjct: 810 gccgacgaccaccatctgccccatgggcttcagtagcgccagcagcggcacgatctggtg 751
Query: 495 gtcggccgacaccgtgtcgatgacgccgtccaaggtgcccgc 536
| || |||||||||||||||| ||||||||| ||| ||||
Sbjct: 750 ccccgctgacaccgtgtcgatgatgccgtccaacgtggccgc 709
>gb|CW479571.1|CW479571 fsbb001f238c15k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f238c15, DNA
sequence
Length = 482
Score = 79.8 bits (40), Expect = 3e-013
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 545 tcatctgctcggggtcgcggctgaccaggaacgcgtcggcaccgaggcggccgagggcct 604
|||| ||| ||| |||| ||||||||| |||||||||||| || ||||| ||||| ||||
Sbjct: 189 tcatttgcgcggcgtcgtggctgaccaagaacgcgtcggcgccaaggcgtccgagcgcct 248
Query: 605 cgtcccgcttgcccagcgacgtgctgatgacg 636
|||| |||||||| |||||| ||||||||||
Sbjct: 249 cgtcgcgcttgccgggcgacgagctgatgacg 280
>gb|BG559907.1|BG559907 RHIZ2_75_B06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 595
Score = 75.8 bits (38), Expect = 4e-012
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 499 gccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcgggg 558
||||||||||||||||||| |||||||| |||||||| ||||||| |||||| ||| |||
Sbjct: 66 gccgacaccgtgtcgatgatgccgtccatggtgcccgtcgccgccttcatctcctccggg 7
Query: 559 tc 560
||
Sbjct: 6 tc 5
Score = 65.9 bits (33), Expect = 4e-009
Identities = 150/189 (79%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||| | ||||||||||| | ||| || ||| |||| || |||| ||
Sbjct: 364 gctgccggcgacgtctatgacgaagcggtagcggacgtcattcttctcgagccgctccat 305
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| || ||||||||| || ||| ||| ||||||| ||
Sbjct: 304 cgccgtgttgacgtagtccatcttgatgacctccacctcggcgccgatgccgtgcttccc 245
Query: 321 ggcaaagtcgagcatggcctggcactccccgacgccgccgccggcactcccggccacgcg 380
|| || || |||||||||||||| |||||||||| |||| || |||| |||||||
Sbjct: 244 cgcgaactcaagcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcc 185
Query: 381 cttcccgcc 389
|||||||||
Sbjct: 184 cttcccgcc 176
>gb|CN138126.1|CN138126 OX1_61_H04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_H04_A002 5', mRNA sequence
Length = 777
Score = 75.8 bits (38), Expect = 4e-012
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 563 ggctgaccaggaacgcgtcggcaccgaggcggccgagggcctcgtcccgcttgcccagcg 622
||||||||| |||||||||||| || ||||| ||||| |||||||| |||||||| |||
Sbjct: 774 ggctgaccaagaacgcgtcggcgccaaggcgtccgagcgcctcgtcgcgcttgccgggcg 715
Query: 623 acgtgctgatgacg 636
||| ||||||||||
Sbjct: 714 acgagctgatgacg 701
>gb|CN148779.1|CN148779 WOUND1_58_F02.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_58_F02_A002 5', mRNA sequence
Length = 797
Score = 75.8 bits (38), Expect = 4e-012
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 499 gccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcgggg 558
||||| ||||||||||||| |||||||| |||||||| ||||||| |||||| ||| |||
Sbjct: 750 gccgataccgtgtcgatgatgccgtccatggtgcccgtcgccgccttcatctcctccggg 691
Query: 559 tcgcggctga 568
|| |||||||
Sbjct: 690 tcccggctga 681
>gb|CW409779.1|CW409779 fsbb001f104d18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f104d18, DNA
sequence
Length = 703
Score = 73.8 bits (37), Expect = 2e-011
Identities = 91/109 (83%)
Strand = Plus / Plus
Query: 435 gccgacgacgaccatctggcccatcggcttgagcaggtccagcagcggcacgacagggtg 494
|||||||| |||||||| ||||| ||||| || || ||||||||||||||| |||||
Sbjct: 182 gccgacgatcaccatctgccccatgggcttcagtagcgccagcagcggcacgatcgggtg 241
Query: 495 gtcggccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgcc 543
| || |||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 242 ccccgctgacaccgtgtcgatgatgccgtccatcgtgcctgccgccgcc 290
Score = 58.0 bits (29), Expect = 1e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 545 tcatctgctcggggtcgcggctgaccaggaacgcgtcggcaccgaggcg 593
|||||||||||| |||||||||||||| |||| ||||||| || |||||
Sbjct: 402 tcatctgctcggtgtcgcggctgaccaagaactcgtcggcgccaaggcg 450
Score = 52.0 bits (26), Expect = 6e-005
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 259 atggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcg 318
||||| || |||||||||||||||| |||| ||| | ||||||||||| |||||||
Sbjct: 6 atggccgtgttgacgtagtccatcctaacgagctcgatgtccgcggtgatgccgtgctgc 65
Query: 319 ccggcaaagtcgagcatggcctggca 344
|| || ||||| ||||| ||||||||
Sbjct: 66 cccgcgaagtccagcatcgcctggca 91
>gb|BG241324.1|BG241324 RHIZ2_49_A04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 462
Score = 73.8 bits (37), Expect = 2e-011
Identities = 151/189 (79%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| ||||||||||| | ||| || ||| |||| || |||| ||
Sbjct: 284 gctgccggcgacgtcgatgacgaagcggtagcggacgtcattcttctcgagccgctccat 225
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| || ||||||||| || ||| ||| ||||||| ||
Sbjct: 224 cgccgtgttgacgtagtccatcttgatgacctccacctcggcgccgatgccgtgcttccc 165
Query: 321 ggcaaagtcgagcatggcctggcactccccgacgccgccgccggcactcccggccacgcg 380
|| || || |||||||||||||| |||||||||| |||| || |||| |||||||
Sbjct: 164 cgcgaactcaagcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcc 105
Query: 381 cttcccgcc 389
|||||||||
Sbjct: 104 cttcccgcc 96
>gb|BG465898.1|BG465898 RHIZ2_46_A02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 453
Score = 73.8 bits (37), Expect = 2e-011
Identities = 151/189 (79%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| ||||||||||| | ||| || ||| |||| || |||| ||
Sbjct: 222 gctgccggcgacgtcgatgacgaagcggtagcggacgtcattcttctcgagccgctccat 163
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| || ||||||||| || ||| ||| ||||||| ||
Sbjct: 162 cgccgtgttgacgtagtccatcttgatgacctccacctcggcgccgatgccgtgcttccc 103
Query: 321 ggcaaagtcgagcatggcctggcactccccgacgccgccgccggcactcccggccacgcg 380
|| || || |||||||||||||| |||||||||| |||| || |||| |||||||
Sbjct: 102 cgcgaactcaagcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcc 43
Query: 381 cttcccgcc 389
|||||||||
Sbjct: 42 cttcccgcc 34
>gb|BG466123.1|BG466123 RHIZ2_48_H07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 473
Score = 73.8 bits (37), Expect = 2e-011
Identities = 151/189 (79%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| ||||||||||| | ||| || ||| |||| || |||| ||
Sbjct: 295 gctgccggcgacgtcgatgacgaagcggtagcggacgtcattcttctcgagccgctccat 236
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| || ||||||||| || ||| ||| ||||||| ||
Sbjct: 235 cgccgtgttgacgtagtccatcttgatgacctccacctcggcgccgatgccgtgcttccc 176
Query: 321 ggcaaagtcgagcatggcctggcactccccgacgccgccgccggcactcccggccacgcg 380
|| || || |||||||||||||| |||||||||| |||| || |||| |||||||
Sbjct: 175 cgcgaactcaagcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcc 116
Query: 381 cttcccgcc 389
|||||||||
Sbjct: 115 cttcccgcc 107
>gb|BI075108.1|BI075108 IP1_19_G01.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 543
Score = 73.8 bits (37), Expect = 2e-011
Identities = 151/189 (79%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| ||||||||||| | || |||||| |||| || |||| |||
Sbjct: 306 gctgccggcgacgtcgatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgat 247
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| || ||| ||||| || ||| ||| ||||||| ||
Sbjct: 246 cgccgtgttgacgtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccc 187
Query: 321 ggcaaagtcgagcatggcctggcactccccgacgccgccgccggcactcccggccacgcg 380
|| || || |||||||||||||| |||||||||| |||| || |||| |||||||
Sbjct: 186 cgcgaactcaagcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcc 127
Query: 381 cttcccgcc 389
|||||||||
Sbjct: 126 cttcccgcc 118
>gb|BG355941.2|BG355941 EM1_18_E06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 635
Score = 73.8 bits (37), Expect = 2e-011
Identities = 151/189 (79%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| ||||||||||| | || |||||| |||| || |||| |||
Sbjct: 363 gctgccggcgacgtcgatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgat 304
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| || ||| ||||| || ||| ||| ||||||| ||
Sbjct: 303 cgccgtgttgacgtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccc 244
Query: 321 ggcaaagtcgagcatggcctggcactccccgacgccgccgccggcactcccggccacgcg 380
|| || || |||||||||||||| |||||||||| |||| || |||| |||||||
Sbjct: 243 cgcgaactcaagcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcc 184
Query: 381 cttcccgcc 389
|||||||||
Sbjct: 183 cttcccgcc 175
Score = 67.9 bits (34), Expect = 1e-009
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 499 gccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcgggg 558
||||| ||||||||||||| |||||||| |||||||| ||||||| |||||| ||| |||
Sbjct: 65 gccgataccgtgtcgatgatgccgtccatggtgcccgtcgccgccttcatctcctccggg 6
Query: 559 tc 560
||
Sbjct: 5 tc 4
>gb|CX614740.1|CX614740 GABR1_16_B02.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_16_B02_A002 3', mRNA sequence
Length = 599
Score = 73.8 bits (37), Expect = 2e-011
Identities = 151/189 (79%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| ||||||||||| | || |||||| |||| || |||| |||
Sbjct: 368 gctgccggcgacgtcgatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgat 309
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| || ||| ||||| || ||| ||| ||||||| ||
Sbjct: 308 cgccgtgttgacgtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccc 249
Query: 321 ggcaaagtcgagcatggcctggcactccccgacgccgccgccggcactcccggccacgcg 380
|| || || |||||||||||||| |||||||||| |||| || |||| |||||||
Sbjct: 248 cgcgaactcaagcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcc 189
Query: 381 cttcccgcc 389
|||||||||
Sbjct: 188 cttcccgcc 180
Score = 71.9 bits (36), Expect = 7e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 505 accgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcggggtcgcgg 564
||||||||||||| |||||||| |||||||| ||||||| |||||| ||| ||||| |||
Sbjct: 64 accgtgtcgatgatgccgtccatggtgcccgtcgccgccttcatctcctccgggtcccgg 5
Query: 565 ctga 568
||||
Sbjct: 4 ctga 1
>gb|CW406042.1|CW406042 fsbb001f098n24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f098n24, DNA
sequence
Length = 472
Score = 71.9 bits (36), Expect = 7e-011
Identities = 129/160 (80%)
Strand = Plus / Plus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||||| ||||||||||| | || |||||| |||| || |||| |||
Sbjct: 274 gctgccggcgacgtcgatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgat 333
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| || ||| ||||| || ||| ||| ||||||| ||
Sbjct: 334 cgccgtgttgacgtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccc 393
Query: 321 ggcaaagtcgagcatggcctggcactccccgacgccgccg 360
|| || || |||||||||||||| |||||||||| ||||
Sbjct: 394 cgcgaactcaagcatggcctggcagtccccgacgctgccg 433
>gb|CN148699.1|CN148699 WOUND1_58_F02.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_58_F02_A002 3', mRNA sequence
Length = 687
Score = 71.9 bits (36), Expect = 7e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 505 accgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcggggtcgcgg 564
||||||||||||| |||||||| |||||||| ||||||| |||||| ||| ||||| |||
Sbjct: 112 accgtgtcgatgatgccgtccatggtgcccgtcgccgccttcatctcctccgggtcccgg 53
Query: 565 ctga 568
||||
Sbjct: 52 ctga 49
Score = 65.9 bits (33), Expect = 4e-009
Identities = 150/189 (79%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||| | ||||||||||| | || |||||| |||| || |||| |||
Sbjct: 416 gctgccggcgacgtcaatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgat 357
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| || ||| ||||| || ||| ||| ||||||| ||
Sbjct: 356 cgccgtgttgacgtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccc 297
Query: 321 ggcaaagtcgagcatggcctggcactccccgacgccgccgccggcactcccggccacgcg 380
|| || || |||||||||||||| |||||||||| |||| || |||| |||||||
Sbjct: 296 cgcgaactcaagcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcc 237
Query: 381 cttcccgcc 389
|||||||||
Sbjct: 236 cttcccgcc 228
>gb|BG052001.1|BG052001 RHIZ2_7_F11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 665
Score = 67.9 bits (34), Expect = 1e-009
Identities = 169/214 (78%)
Strand = Plus / Minus
Query: 423 cttggtgggcaggccgacgacgaccatctggcccatcggcttgagcaggtccagcagcgg 482
|||||||||||||||||| | |||||||| ||| | |||||||||||| || | |||
Sbjct: 383 cttggtgggcaggccgaccatgaccatcttgccgttgggcttgagcaggctcatgaacgg 324
Query: 483 cacgacagggtggtcggccgacaccgtgtcgatgacgccgtccaaggtgcccgccgccgc 542
| | | ||| || ||| |||||||||| ||||| ||| |||| ||||| |||||||||
Sbjct: 323 cgccaaggggatgttggcggacaccgtgttgatgatgccatccatggtgctcgccgccgc 264
Query: 543 cctcatctgctcggggtcgcggctgaccaggaacgcgtcggcaccgaggcggccgagggc 602
| |||||| ||||| ||| ||||| | ||| |||||||| ||||| ||| | | |||
Sbjct: 263 cttcatctcctcggcgtccttactgacgacgaaggcgtcggcgccgagccggtccatggc 204
Query: 603 ctcgtcccgcttgcccagcgacgtgctgatgacg 636
||| | | ||| ||| |||||||||||||||||
Sbjct: 203 ctcctgcttcttccccggcgacgtgctgatgacg 170
>gb|BM328692.1|BM328692 PIC1_25_D10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 555
Score = 65.9 bits (33), Expect = 4e-009
Identities = 150/189 (79%)
Strand = Plus / Minus
Query: 201 gctgcccgcgacgtcgacaacgaagcggtacctgacatcgttcctctctaggcgctggat 260
|||||| |||||||| | ||||||||||| | || |||||| |||| || |||| |||
Sbjct: 282 gctgccggcgacgtcaatgacgaagcggtagcgaacgtcgttcttctcgagccgctcgat 223
Query: 261 ggcggtattgacgtagtccatcccgacgacctccacatccgcggtgatcccgtgctcgcc 320
|| || ||||||||||||||| || ||| ||||| || ||| ||| ||||||| ||
Sbjct: 222 cgccgtgttgacgtagtccatcttgatgacttccacctcggcgccgatgccgtgcttccc 163
Query: 321 ggcaaagtcgagcatggcctggcactccccgacgccgccgccggcactcccggccacgcg 380
|| || || |||||||||||||| |||||||||| |||| || |||| |||||||
Sbjct: 162 cgcgaactcaagcatggcctggcagtccccgacgctgccgacgctgttcccagccacgcc 103
Query: 381 cttcccgcc 389
|||||||||
Sbjct: 102 cttcccgcc 94
>gb|CW032099.1|CW032099 104_261_10501183_114_30363 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501183, DNA
sequence
Length = 577
Score = 61.9 bits (31), Expect = 7e-008
Identities = 109/135 (80%)
Strand = Plus / Plus
Query: 502 gacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcggggtcg 561
|||||||||| ||||| ||| |||| ||||| |||||||||| |||||| ||||| |||
Sbjct: 310 gacaccgtgttgatgatgccatccatggtgctcgccgccgccttcatctcctcggcgtcc 369
Query: 562 cggctgaccaggaacgcgtcggcaccgaggcggccgagggcctcgtcccgcttgcccagc 621
||||| | ||| |||||||| ||||| ||| | | |||||| | | ||| ||| ||
Sbjct: 370 ttactgacgacgaaggcgtcggcgccgagccggtccatggcctcctgcttcttccccggc 429
Query: 622 gacgtgctgatgacg 636
|||||||||||||||
Sbjct: 430 gacgtgctgatgacg 444
>gb|CW310290.1|CW310290 104_799_11469637_148_35749_057 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469637, DNA
sequence
Length = 671
Score = 61.9 bits (31), Expect = 7e-008
Identities = 109/135 (80%)
Strand = Plus / Plus
Query: 502 gacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcggggtcg 561
|||||||||| ||||| ||| |||| ||||| |||||||||| |||||| ||||| |||
Sbjct: 55 gacaccgtgttgatgatgccatccatggtgctcgccgccgccttcatctcctcggcgtcc 114
Query: 562 cggctgaccaggaacgcgtcggcaccgaggcggccgagggcctcgtcccgcttgcccagc 621
||||| | ||| |||||||| ||||| ||| | | |||||| | | ||| ||| ||
Sbjct: 115 ttactgacgacgaaggcgtcggcgccgagccggtccatggcctcctgcttcttccccggc 174
Query: 622 gacgtgctgatgacg 636
|||||||||||||||
Sbjct: 175 gacgtgctgatgacg 189
>gb|CW391632.1|CW391632 fsbb001f077n22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f077n22, DNA
sequence
Length = 708
Score = 61.9 bits (31), Expect = 7e-008
Identities = 109/135 (80%)
Strand = Plus / Plus
Query: 502 gacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcggggtcg 561
|||||||||| ||||| ||| |||| ||||| |||||||||| |||||| ||||| |||
Sbjct: 527 gacaccgtgttgatgatgccatccatggtgctcgccgccgccttcatctcctcggcgtcc 586
Query: 562 cggctgaccaggaacgcgtcggcaccgaggcggccgagggcctcgtcccgcttgcccagc 621
||||| | ||| |||||||| ||||| ||| | | |||||| | | ||| ||| ||
Sbjct: 587 ttactgacgacgaaggcgtcggcgccgagccggtccatggcctcctgcttcttccccggc 646
Query: 622 gacgtgctgatgacg 636
|||||||||||||||
Sbjct: 647 gacgtgctgatgacg 661
>gb|CN145887.1|CN145887 WOUND1_36_A11.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_36_A11_A002 3', mRNA sequence
Length = 819
Score = 61.9 bits (31), Expect = 7e-008
Identities = 109/135 (80%)
Strand = Plus / Minus
Query: 502 gacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcggggtcg 561
|||||||||| ||||| ||| |||| ||||| |||||||||| |||||| ||||| |||
Sbjct: 344 gacaccgtgttgatgatgccatccatggtgctcgccgccgccttcatctcctcggcgtcc 285
Query: 562 cggctgaccaggaacgcgtcggcaccgaggcggccgagggcctcgtcccgcttgcccagc 621
||||| | ||| |||||||| ||||| ||| | | |||||| | | ||| ||| ||
Sbjct: 284 ttactgacgacgaaggcgtcggcgccgagccggtccatggcctcctgcttcttccccggc 225
Query: 622 gacgtgctgatgacg 636
|||||||||||||||
Sbjct: 224 gacgtgctgatgacg 210
>gb|BE593454.1|BE593454 WS1_98_A11.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 224
Score = 60.0 bits (30), Expect = 3e-007
Identities = 108/134 (80%)
Strand = Plus / Minus
Query: 502 gacaccgtgtcgatgacgccgtccaaggtgcccgccgccgccctcatctgctcggggtcg 561
|||||||||| ||||| ||| |||| ||||| |||||||||| |||||| ||||| |||
Sbjct: 142 gacaccgtgttgatgatgccatccatggtgctcgccgccgccttcatctcctcggcgtcc 83
Query: 562 cggctgaccaggaacgcgtcggcaccgaggcggccgagggcctcgtcccgcttgcccagc 621
||||| | ||| |||||||| ||||| ||| | | |||||| | | ||| ||| ||
Sbjct: 82 ttactgacgacgaaggcgtcggcgccgagccggtccatggcctcctgcttcttccccggc 23
Query: 622 gacgtgctgatgac 635
||||||||||||||
Sbjct: 22 gacgtgctgatgac 9
>gb|CW107624.1|CW107624 104_478_11096696_148_34482_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096696, DNA
sequence
Length = 252
Score = 58.0 bits (29), Expect = 1e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 545 tcatctgctcggggtcgcggctgaccaggaacgcgtcggcaccgaggcg 593
|||||||||||| |||||||||||||| |||| ||||||| || |||||
Sbjct: 51 tcatctgctcggtgtcgcggctgaccaagaactcgtcggcgccaaggcg 99
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 359,998
Number of Sequences: 832831
Number of extensions: 359998
Number of successful extensions: 92891
Number of sequences better than 0.5: 101
Number of HSP's better than 0.5 without gapping: 99
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 92682
Number of HSP's gapped (non-prelim): 197
length of query: 636
length of database: 491,359,669
effective HSP length: 19
effective length of query: 617
effective length of database: 475,535,880
effective search space: 293405637960
effective search space used: 293405637960
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)