BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943966.2.1
(599 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW249841.1|CW249841 104_711_11223062_116_35044_051 Sorgh... 323 1e-086
gb|CW124219.1|CW124219 104_503_11111651_148_34693_034 Sorgh... 319 2e-085
gb|BZ628758.1|BZ628758 ih62b02.b1 WGS-SbicolorF (DH5a methy... 307 6e-082
gb|BZ628759.1|BZ628759 ih62b02.g1 WGS-SbicolorF (DH5a methy... 307 6e-082
gb|CW318949.1|CW318949 104_811_11474228_148_35883_074 Sorgh... 307 6e-082
gb|CN146262.1|CN146262 WOUND1_39_D11.b1_A002 Wounded leaves... 307 6e-082
gb|CX612764.1|CX612764 GABR1_4_G09.b1_A002 GA- or brassinol... 297 6e-079
gb|CD236128.1|CD236128 SS1_32_B09.b1_A012 Salt-stressed see... 289 1e-076
gb|BG241494.1|BG241494 RHIZ2_50_A05.g1_A003 Rhizome2 (RHIZ2... 281 4e-074
gb|CL177459.1|CL177459 104_384_10893845_116_31916_293 Sorgh... 256 2e-066
gb|CN137489.1|CN137489 OX1_57_D04.g1_A002 Oxidatively-stres... 238 5e-061
gb|BE361254.1|BE361254 DG1_70_D12.g1_A002 Dark Grown 1 (DG1... 236 2e-060
gb|BE363001.2|BE363001 DG1_92_G01.g1_A002 Dark Grown 1 (DG1... 226 2e-057
gb|BG101966.1|BG101966 RHIZ2_22_A05.g1_A003 Rhizome2 (RHIZ2... 210 1e-052
gb|CN146340.1|CN146340 WOUND1_39_D11.g1_A002 Wounded leaves... 202 3e-050
gb|CW180237.1|CW180237 104_594_11160530_148_36631_003 Sorgh... 196 2e-048
gb|BE356814.1|BE356814 DG1_12_D07.g1_A002 Dark Grown 1 (DG1... 196 2e-048
gb|CX612853.1|CX612853 GABR1_4_G09.g1_A002 GA- or brassinol... 194 6e-048
gb|CW180236.1|CW180236 104_594_11160530_116_36635_003 Sorgh... 190 1e-046
gb|CW249842.1|CW249842 104_711_11223062_148_35048_051 Sorgh... 188 4e-046
gb|CW184571.1|CW184571 104_600_11165220_116_36688_034 Sorgh... 184 6e-045
gb|BE361185.1|BE361185 DG1_70_D12.b1_A002 Dark Grown 1 (DG1... 182 2e-044
gb|CD430220.1|CD430220 ETH1_17_C09.g1_A002 Ethylene-treated... 174 6e-042
gb|BG103195.1|BG103195 RHIZ2_19_D03.g1_A003 Rhizome2 (RHIZ2... 159 4e-037
gb|BG103368.1|BG103368 RHIZ2_19_D03.b1_A003 Rhizome2 (RHIZ2... 159 4e-037
gb|CD430207.1|CD430207 ETH1_17_H03.g1_A002 Ethylene-treated... 157 1e-036
gb|BG557655.1|BG557655 EM1_54_G11.g1_A002 Embryo 1 (EM1) So... 151 9e-035
gb|CD462503.1|CD462503 ETH1_38_E02.b1_A002 Ethylene-treated... 127 1e-027
gb|CN137417.1|CN137417 OX1_57_D04.b1_A002 Oxidatively-stres... 119 3e-025
gb|CW247562.1|CW247562 104_708_11221843_116_35017_070 Sorgh... 117 1e-024
gb|CW463139.1|CW463139 fsbb001f211j12f0 Sorghum methylation... 117 1e-024
gb|BG559614.1|BG559614 RHIZ2_71_B07.g1_A003 Rhizome2 (RHIZ2... 113 2e-023
gb|AW923175.1|AW923175 DG1_49_A09.g1_A002 Dark Grown 1 (DG1... 109 3e-022
gb|CF432712.1|CF432712 NIT1_18_A03.g1_A002 Nitrogen-deficie... 105 5e-021
gb|BG559195.1|BG559195 RHIZ2_55_G08.g1_A003 Rhizome2 (RHIZ2... 94 2e-017
gb|BE353027.1|BE353027 DG1_2_H03.g1_A002 Dark Grown 1 (DG1)... 88 1e-015
gb|BE125749.1|BE125749 DG1_55_H11.b1_A002 Dark Grown 1 (DG1... 86 4e-015
gb|BG356843.1|BG356843 OV2_10_F11.g1_A002 Ovary 2 (OV2) Sor... 86 4e-015
gb|CD429550.1|CD429550 ETH1_14_C02.b1_A002 Ethylene-treated... 86 4e-015
gb|CF427166.1|CF427166 PH1_4_H04.b1_A002 Phosphorous-defici... 86 4e-015
gb|CF433879.1|CF433879 NIT1_30_C03.g1_A002 Nitrogen-deficie... 86 4e-015
gb|CF480279.1|CF480279 POL1_64_F12.g1_A002 Pollen Sorghum b... 86 4e-015
gb|CN128942.1|CN128942 RHOH1_32_C05.g1_A002 Acid- and alkal... 86 4e-015
gb|CN137990.1|CN137990 OX1_61_C04.b1_A002 Oxidatively-stres... 86 4e-015
gb|CN138077.1|CN138077 OX1_61_C04.g1_A002 Oxidatively-stres... 86 4e-015
gb|BE360322.1|BE360322 DG1_62_C12.g1_A002 Dark Grown 1 (DG1... 84 2e-014
gb|CF428636.1|CF428636 PH1_9_G09.g1_A002 Phosphorous-defici... 80 3e-013
gb|CN123933.1|CN123933 RHOH1_1_D01.g1_A002 Acid- and alkali... 80 3e-013
gb|CN127149.1|CN127149 RHOH1_21_G07.b1_A002 Acid- and alkal... 78 1e-012
gb|CN128863.1|CN128863 RHOH1_32_C05.b1_A002 Acid- and alkal... 78 1e-012
gb|CF432632.1|CF432632 NIT1_18_G06.b1_A002 Nitrogen-deficie... 74 2e-011
gb|CN127238.1|CN127238 RHOH1_21_G07.g3_A002 Acid- and alkal... 72 6e-011
gb|CW265394.1|CW265394 104_734_11231851_148_35263_070 Sorgh... 62 6e-008
gb|BE360832.1|BE360832 DG1_67_F09.b2_A002 Dark Grown 1 (DG1... 62 6e-008
gb|BE360918.1|BE360918 DG1_67_F09.g1_A002 Dark Grown 1 (DG1... 62 6e-008
gb|BE363067.1|BE363067 DG1_9_E08.b1_A002 Dark Grown 1 (DG1)... 62 6e-008
gb|BE363151.1|BE363151 DG1_9_E08.g1_A002 Dark Grown 1 (DG1)... 62 6e-008
gb|CD229128.1|CD229128 CCC1_13_F11.b1_A007 Callus culture/c... 62 6e-008
gb|CF479933.1|CF479933 POL1_62_E11.g1_A002 Pollen Sorghum b... 62 6e-008
gb|CD229208.1|CD229208 CCC1_13_F11.g1_A007 Callus culture/c... 60 2e-007
gb|CW318948.1|CW318948 104_811_11474228_116_35879_074 Sorgh... 58 1e-006
gb|AW282821.1|AW282821 LG1_305_H12.g1_A002 Light Grown 1 (L... 58 1e-006
gb|BI098677.1|BI098677 IP1_35_E08.g1_A002 Immature pannicle... 58 1e-006
gb|BI099425.1|BI099425 IP1_41_H11.g1_A002 Immature pannicle... 58 1e-006
gb|BI351083.1|BI351083 IP1_69_F01.g1_A002 Immature pannicle... 58 1e-006
gb|CN132666.1|CN132666 OX1_7_B07.g1_A002 Oxidatively-stress... 58 1e-006
gb|CX609214.1|CX609214 ANR1_11_G12.b1_A002 Anaerobic roots ... 56 4e-006
gb|CX609300.1|CX609300 ANR1_11_G12.g1_A002 Anaerobic roots ... 56 4e-006
gb|CW268100.1|CW268100 104_738_11401097_148_35299_069 Sorgh... 52 6e-005
gb|CW411486.1|CW411486 fsbb001f106k20f0 Sorghum methylation... 52 6e-005
gb|CW463140.1|CW463140 fsbb001f211j12k0 Sorghum methylation... 52 6e-005
gb|BE360219.1|BE360219 DG1_62_C12.b1_A002 Dark Grown 1 (DG1... 52 6e-005
gb|BI140992.1|BI140992 IP1_41_G12.b1_A002 Immature pannicle... 52 6e-005
gb|BI141003.1|BI141003 IP1_41_H11.b1_A002 Immature pannicle... 52 6e-005
gb|CD428979.1|CD428979 ETH1_1_A03.g1_A002 Ethylene-treated ... 52 6e-005
gb|CD429608.1|CD429608 ETH1_14_C02.g1_A002 Ethylene-treated... 52 6e-005
gb|CF427278.1|CF427278 PH1_4_H04.g1_A002 Phosphorous-defici... 52 6e-005
gb|CF432761.1|CF432761 NIT1_18_G06.g1_A002 Nitrogen-deficie... 52 6e-005
gb|CN135765.1|CN135765 OX1_38_G08.g1_A002 Oxidatively-stres... 52 6e-005
gb|BI099415.1|BI099415 IP1_41_G12.g1_A002 Immature pannicle... 50 2e-004
gb|CN132579.1|CN132579 OX1_7_B07.b1_A002 Oxidatively-stress... 50 2e-004
gb|BG465826.1|BG465826 RHIZ2_45_A09.g1_A003 Rhizome2 (RHIZ2... 48 0.001
gb|BG466056.1|BG466056 RHIZ2_48_A08.g1_A003 Rhizome2 (RHIZ2... 48 0.001
gb|CW027026.1|CW027026 104_253_10498278_114_30533 Sorghum m... 46 0.004
gb|CN133810.1|CN133810 OX1_18_A10.g1_A002 Oxidatively-stres... 46 0.004
gb|BE356694.1|BE356694 DG1_12_D07.b1_A002 Dark Grown 1 (DG1... 42 0.058
gb|CL154605.1|CL154605 104_340_10781530_116_31470_010 Sorgh... 40 0.23
gb|CL154777.1|CL154777 104_340_10781642_116_31470_122 Sorgh... 40 0.23
gb|CW044938.1|CW044938 104_281_10509260_114_30237 Sorghum m... 40 0.23
gb|CW091113.1|CW091113 104_451_10997678_116_32541_006 Sorgh... 40 0.23
gb|CW119176.1|CW119176 104_496_11108622_148_34635_031 Sorgh... 40 0.23
gb|CW130377.1|CW130377 104_512_11115082_116_34769_033 Sorgh... 40 0.23
gb|CW241007.1|CW241007 104_700_11218528_116_37546_064 Sorgh... 40 0.23
gb|CW241008.1|CW241008 104_700_11218528_148_37541_064 Sorgh... 40 0.23
gb|CW273826.1|CW273826 104_746_11404107_116_35364_008 Sorgh... 40 0.23
gb|CW273827.1|CW273827 104_746_11404107_148_35368_008 Sorgh... 40 0.23
gb|CW479514.1|CW479514 fsbb001f238b07k0 Sorghum methylation... 40 0.23
gb|CD429497.1|CD429497 ETH1_4_H03.g1_A002 Ethylene-treated ... 40 0.23
gb|CD462624.1|CD462624 ETH1_38_E02.g1_A002 Ethylene-treated... 40 0.23
>gb|CW249841.1|CW249841 104_711_11223062_116_35044_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223062, DNA
sequence
Length = 683
Score = 323 bits (163), Expect = 1e-086
Identities = 316/367 (86%)
Strand = Plus / Plus
Query: 226 atcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaa 285
|||| |||| ||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 223 atcacacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcga 282
Query: 286 cgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgt 345
||||| |||||| |||||||| |||||||||| | || |||||| |||| | | ||
Sbjct: 283 cgcgcgggtccgccgagaggcgggcgttgaggtcgcggacggcggcggagatgcggcggt 342
Query: 346 cgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgt 405
|| |||||||||||||| || || |||| |||||||| ||| ||| ||||||||||
Sbjct: 343 cgtggtccgacatgggcgcgtcgggcggcagcgccacggtgccgtcccacagcgtgttgt 402
Query: 406 cgtacacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagt 465
||||||||| || ||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 403 cgtacacgacggcgccgccgacgcgcaccaggcggagcagctgctcgtggtaccgcacgt 462
Query: 466 agttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccgaggttggcctcgtcgg 525
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 463 agttgggcttgtcggcgtcgacgaaggcgaagtcgaacgcgccgtggttggcctcgtcgg 522
Query: 526 cgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgcccgcca 585
|||| ||| ||||||||| ||||||| |||||||| |||||||| |||||| |||||
Sbjct: 523 cgagcagcgcgtccaggtgctccagcgcagggccctcccggaagtccaccttgtgcgcca 582
Query: 586 cgccggc 592
| |||||
Sbjct: 583 caccggc 589
>gb|CW124219.1|CW124219 104_503_11111651_148_34693_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11111651, DNA
sequence
Length = 594
Score = 319 bits (161), Expect = 2e-085
Identities = 308/357 (86%)
Strand = Plus / Plus
Query: 236 gcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgcgctcgtc 295
||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |||
Sbjct: 2 gcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgacgcgcgggtc 61
Query: 296 cgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcgatgtccga 355
||| |||||||| |||||||||| | || |||||| |||| | | |||| ||||||
Sbjct: 62 cgccgagaggcgggcgttgaggtcgcggacggcggcggagatgcggcggtcgtggtccga 121
Query: 356 catgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgtacacgat 415
|||||||| || || |||| |||||||| ||| ||| |||||||||||||||||||
Sbjct: 122 catgggcgcgtcgggcggcagcgccacggtgccgtcccacagcgtgttgtcgtacacgac 181
Query: 416 ggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagttgggctt 475
|| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 182 ggcgccgccgacgcgcaccaggcggagcagctgctcgtggtaccgcacgtagttgggctt 241
Query: 476 gtcggcgtcgacgaaggcgaagtcgaaggcgccgaggttggcctcgtcggcgaggagctc 535
||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| |
Sbjct: 242 gtcggcgtcgacgaaggcgaagtcgaacgcgccgtggttggcctcgtcggcgagcagcgc 301
Query: 536 gtccaggttgcccagcgcggggccctcgcggaagtcgaccttgcccgccacgccggc 592
|||||||| ||||||| |||||||| |||||||| |||||| |||||| |||||
Sbjct: 302 gtccaggtgctccagcgcagggccctcccggaagtccaccttgtgcgccacaccggc 358
>gb|BZ628758.1|BZ628758 ih62b02.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih62b02 5', DNA sequence
Length = 564
Score = 307 bits (155), Expect = 6e-082
Identities = 320/375 (85%)
Strand = Plus / Plus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
|||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 113 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 172
Query: 285 acgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctg 344
|||||||| ||| || || | || ||||||||| |||| || ||||||||||||| |
Sbjct: 173 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 232
Query: 345 tcgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttg 404
|| | ||| ||||||||||||||| |||| |||||||||||| ||| |||||||||
Sbjct: 233 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 292
Query: 405 tcgtacacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaag 464
|| ||||||||| | ||||| || | |||||| |||||||||||||||||||| | |
Sbjct: 293 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 352
Query: 465 tagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccgaggttggcctcgtcg 524
|||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 353 tagttgggcttgtcggcgtcgacgaacgcgaagtcgaacgcgccgtggttggcctcgtcg 412
Query: 525 gcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgcccgcc 584
||||| ||| |||||||| | ||||||| ||||| || ||||||||||||||| |||
Sbjct: 413 gcgagcagcgcgtccaggccgtccagcgccgggccttcccggaagtcgaccttgtgcgcg 472
Query: 585 acgccggcgcgctcg 599
|||||||||| ||||
Sbjct: 473 acgccggcgctctcg 487
>gb|BZ628759.1|BZ628759 ih62b02.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih62b02 5', DNA sequence
Length = 645
Score = 307 bits (155), Expect = 6e-082
Identities = 320/375 (85%)
Strand = Plus / Minus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
|||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 629 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 570
Query: 285 acgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctg 344
|||||||| ||| || || | || ||||||||| |||| || ||||||||||||| |
Sbjct: 569 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 510
Query: 345 tcgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttg 404
|| | ||| ||||||||||||||| |||| |||||||||||| ||| |||||||||
Sbjct: 509 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 450
Query: 405 tcgtacacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaag 464
|| ||||||||| | ||||| || | |||||| |||||||||||||||||||| | |
Sbjct: 449 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 390
Query: 465 tagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccgaggttggcctcgtcg 524
|||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 389 tagttgggcttgtcggcgtcgacgaacgcgaagtcgaacgcgccgtggttggcctcgtcg 330
Query: 525 gcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgcccgcc 584
||||| ||| |||||||| | ||||||| ||||| || ||||||||||||||| |||
Sbjct: 329 gcgagcagcgcgtccaggccgtccagcgccgggccttcccggaagtcgaccttgtgcgcg 270
Query: 585 acgccggcgcgctcg 599
|||||||||| ||||
Sbjct: 269 acgccggcgctctcg 255
>gb|CW318949.1|CW318949 104_811_11474228_148_35883_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474228, DNA
sequence
Length = 708
Score = 307 bits (155), Expect = 6e-082
Identities = 320/375 (85%)
Strand = Plus / Plus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
|||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 172 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 231
Query: 285 acgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctg 344
|||||||| ||| || || | || ||||||||| |||| || ||||||||||||| |
Sbjct: 232 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 291
Query: 345 tcgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttg 404
|| | ||| ||||||||||||||| |||| |||||||||||| ||| |||||||||
Sbjct: 292 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 351
Query: 405 tcgtacacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaag 464
|| ||||||||| | ||||| || | |||||| |||||||||||||||||||| | |
Sbjct: 352 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 411
Query: 465 tagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccgaggttggcctcgtcg 524
|||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 412 tagttgggcttgtcggcgtcgacgaacgcgaagtcgaacgcgccgtggttggcctcgtcg 471
Query: 525 gcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgcccgcc 584
||||| ||| |||||||| | ||||||| ||||| || ||||||||||||||| |||
Sbjct: 472 gcgagcagcgcgtccaggccgtccagcgccgggccttcccggaagtcgaccttgtgcgcg 531
Query: 585 acgccggcgcgctcg 599
|||||||||| ||||
Sbjct: 532 acgccggcgctctcg 546
>gb|CN146262.1|CN146262 WOUND1_39_D11.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_39_D11_A002 3', mRNA sequence
Length = 713
Score = 307 bits (155), Expect = 6e-082
Identities = 320/375 (85%)
Strand = Plus / Minus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
|||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 482 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 423
Query: 285 acgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctg 344
|||||||| ||| || || | || ||||||||| |||| || ||||||||||||| |
Sbjct: 422 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 363
Query: 345 tcgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttg 404
|| | ||| ||||||||||||||| |||| |||||||||||| ||| |||||||||
Sbjct: 362 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 303
Query: 405 tcgtacacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaag 464
|| ||||||||| | ||||| || | |||||| |||||||||||||||||||| | |
Sbjct: 302 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 243
Query: 465 tagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccgaggttggcctcgtcg 524
|||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 242 tagttgggcttgtcggcgtcgacgaacgcgaagtcgaacgcgccgtggttggcctcgtcg 183
Query: 525 gcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgcccgcc 584
||||| ||| |||||||| | ||||||| ||||| || ||||||||||||||| |||
Sbjct: 182 gcgagcagcgcgtccaggccgtccagcgccgggccttcccggaagtcgaccttgtgcgcg 123
Query: 585 acgccggcgcgctcg 599
|||||||||| ||||
Sbjct: 122 acgccggcgctctcg 108
>gb|CX612764.1|CX612764 GABR1_4_G09.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_4_G09_A002 3', mRNA sequence
Length = 661
Score = 297 bits (150), Expect = 6e-079
Identities = 315/370 (85%)
Strand = Plus / Minus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
||||| |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 372 catcaaacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 313
Query: 285 acgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctg 344
|||||||| ||| || || | || ||||||||| |||| || ||||||||||||| |
Sbjct: 312 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 253
Query: 345 tcgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttg 404
|| | ||| ||||||||||||||| |||| |||||||||||| ||| |||||||||
Sbjct: 252 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 193
Query: 405 tcgtacacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaag 464
|| ||||||||| | ||||| || | |||||| |||||||||||||||||||| | |
Sbjct: 192 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 133
Query: 465 tagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccgaggttggcctcgtcg 524
|||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 132 tagttgggcttgtcggcgtcgacgaacgcgaagtcgaacgcgccgtggttggcctcgtcg 73
Query: 525 gcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgcccgcc 584
||||| ||| |||||||| | ||||||| ||||| || ||||||||||||||| |||
Sbjct: 72 gcgagcagcgcgtccaggccgtccagcgccgggccttcccggaagtcgaccttgtgcgcg 13
Query: 585 acgccggcgc 594
||||||||||
Sbjct: 12 acgccggcgc 3
>gb|CD236128.1|CD236128 SS1_32_B09.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_32_B09_A012 3', mRNA sequence
Length = 591
Score = 289 bits (146), Expect = 1e-076
Identities = 302/354 (85%)
Strand = Plus / Minus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
||||| |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 364 catcaaacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 305
Query: 285 acgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctg 344
|||||||| ||| || || | || ||||||||| |||| || ||||||||||||| |
Sbjct: 304 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 245
Query: 345 tcgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttg 404
|| | ||| ||||||||||||||| |||| |||||||||||| ||| |||||||||
Sbjct: 244 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 185
Query: 405 tcgtacacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaag 464
|| ||||||||| | ||||| || | |||||| |||||||||||||||||||| | |
Sbjct: 184 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 125
Query: 465 tagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccgaggttggcctcgtcg 524
|||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 124 tagttgggcttgtcggcgtcgacgaacgcgaagtcgaacgcgccgtggttggcctcgtcg 65
Query: 525 gcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttg 578
||||| ||| |||||||| | ||||||| ||||| || |||||||||||||||
Sbjct: 64 gcgagcagcgcgtccaggccgtccagcgccgggccttcccggaagtcgaccttg 11
>gb|BG241494.1|BG241494 RHIZ2_50_A05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 526
Score = 281 bits (142), Expect = 4e-074
Identities = 313/370 (84%)
Strand = Plus / Minus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
|||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 372 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 313
Query: 285 acgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctg 344
|||||||| ||| || || | || ||||||||| |||| || |||||||||||||
Sbjct: 312 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccga 253
Query: 345 tcgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttg 404
|| | ||| ||||||||||||||| |||| |||||||| ||| ||| |||||||||
Sbjct: 252 tccaggtcattcatgggcgtctccggcggcaacgccacggtgccggcccacagcgtgttg 193
Query: 405 tcgtacacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaag 464
|| ||||||||| | ||||| || | |||||| |||||||||||||||||||| | |
Sbjct: 192 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 133
Query: 465 tagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccgaggttggcctcgtcg 524
|||||||||||||||||||| ||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 132 tagttgggcttgtcggcgtccacgaacgcgaagtcgaacgcgccgtggttggcctcgtcg 73
Query: 525 gcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgcccgcc 584
||||| ||| |||||||| | |||||||||||| || ||||||||||||||| |||
Sbjct: 72 gcgagcagcgcgtccaggccgtacagcgcggggccttcccggaagtcgaccttgtgcgcg 13
Query: 585 acgccggcgc 594
||||||||||
Sbjct: 12 acgccggcgc 3
>gb|CL177459.1|CL177459 104_384_10893845_116_31916_293 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893845, DNA
sequence
Length = 545
Score = 256 bits (129), Expect = 2e-066
Identities = 258/301 (85%)
Strand = Plus / Minus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
|||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 301 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 242
Query: 285 acgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctg 344
|||||||| ||| || || | || ||||||||| |||| || ||||||||||||| |
Sbjct: 241 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 182
Query: 345 tcgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttg 404
|| | ||| ||||||||||||||| |||| |||||||||||| ||| |||||||||
Sbjct: 181 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 122
Query: 405 tcgtacacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaag 464
|| ||||||||| | ||||| || | |||||| |||||||||||||||||||| | |
Sbjct: 121 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 62
Query: 465 tagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccgaggttggcctcgtcg 524
|||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 61 tagttgggcttgtcggcgtcgacgaacgcgaagtcgaacgcgccgtggttggcctcgtcg 2
Query: 525 g 525
|
Sbjct: 1 g 1
>gb|CN137489.1|CN137489 OX1_57_D04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_D04_A002 5', mRNA sequence
Length = 786
Score = 238 bits (120), Expect = 5e-061
Identities = 246/288 (85%)
Strand = Plus / Minus
Query: 312 ttgaggtccctgatggcggccgagaacctcctgtcgatgtccgacatgggcgtctccggt 371
||||||||| |||| || ||||||||||||| ||| | ||| |||||||||||||||
Sbjct: 774 ttgaggtccttgatcgccgccgagaacctccggtccaggtcattcatgggcgtctccggc 715
Query: 372 ggcatggccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgcgc 431
|||| |||||||||||| ||| ||||||||||| ||||||||| | ||||| || | |
Sbjct: 714 ggcaacgccacggtcccggcccacagcgtgttgtcatacacgatgctcccgcccaccctc 655
Query: 432 accaggcggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaag 491
||||| |||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 654 accagacggagcagctgctcgtggtaccgcacgtagttgggcttgtcggcgtcgacgaac 595
Query: 492 gcgaagtcgaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagc 551
||||||||||| |||||| ||||||||||||||||||| ||| |||||||| | |||||
Sbjct: 594 gcgaagtcgaacgcgccgtggttggcctcgtcggcgagcagcgcgtccaggccgtccagc 535
Query: 552 gcggggccctcgcggaagtcgaccttgcccgccacgccggcgcgctcg 599
|| ||||| || ||||||||||||||| ||| |||||||||| ||||
Sbjct: 534 gccgggccttcccggaagtcgaccttgtgcgcgacgccggcgctctcg 487
>gb|BE361254.1|BE361254 DG1_70_D12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 408
Score = 236 bits (119), Expect = 2e-060
Identities = 191/215 (88%)
Strand = Plus / Minus
Query: 378 gccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgcgcaccagg 437
|||||||| ||| ||| ||||||||||||||||||| || |||||||||||||||||||
Sbjct: 408 gccacggtgccgtcccacagcgtgttgtcgtacacgacggcgccgccgacgcgcaccagg 349
Query: 438 cggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaag 497
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 348 cggagcagctgctcgtggtaccgcacgtagttgggcttgtcggcgtcgacgaaggcgaag 289
Query: 498 tcgaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcgggg 557
||||| |||||| ||||||||||||||||||| ||| ||||||||| ||||||| |||
Sbjct: 288 tcgaacgcgccgtggttggcctcgtcggcgagcagcgcgtccaggtgctccagcgcaggg 229
Query: 558 ccctcgcggaagtcgaccttgcccgccacgccggc 592
||||| |||||||| |||||| |||||| |||||
Sbjct: 228 ccctcccggaagtccaccttgtgcgccacaccggc 194
>gb|BE363001.2|BE363001 DG1_92_G01.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 519
Score = 226 bits (114), Expect = 2e-057
Identities = 237/278 (85%)
Strand = Plus / Minus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
|||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 281 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 222
Query: 285 acgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctg 344
|||||||| ||| || || | || ||||||||| |||| || ||||||||||||| |
Sbjct: 221 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 162
Query: 345 tcgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttg 404
|| | ||| ||||||||||||||| |||| |||||||||||| ||| |||||||||
Sbjct: 161 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 102
Query: 405 tcgtacacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaag 464
|| ||||||||| | ||||| || | |||||| |||||||||||||||||||| | |
Sbjct: 101 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 42
Query: 465 tagttgggcttgtcggcgtcgacgaaggcgaagtcgaa 502
|||||||||||||||||||||||||| |||||||||||
Sbjct: 41 tagttgggcttgtcggcgtcgacgaacgcgaagtcgaa 4
>gb|BG101966.1|BG101966 RHIZ2_22_A05.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 546
Score = 210 bits (106), Expect = 1e-052
Identities = 244/290 (84%)
Strand = Plus / Minus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
|||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 290 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 231
Query: 285 acgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctg 344
|||||||| ||| || || | || ||||||||| |||| || |||||||||||||
Sbjct: 230 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccga 171
Query: 345 tcgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttg 404
|| | ||| ||||||||||||||| |||| |||||||| ||| ||| |||||||||
Sbjct: 170 tccaggtcattcatgggcgtctccggcggcaacgccacggtgccggcccacagcgtgttg 111
Query: 405 tcgtacacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaag 464
|| ||||||||| | ||||| || | |||||| |||||||||||||||||||| | |
Sbjct: 110 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 51
Query: 465 tagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccgaggtt 514
|||||||||||||||||||| ||||| ||||||||||| |||||| ||||
Sbjct: 50 tagttgggcttgtcggcgtccacgaacgcgaagtcgaacgcgccgtggtt 1
>gb|CN146340.1|CN146340 WOUND1_39_D11.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_39_D11_A002 5', mRNA sequence
Length = 719
Score = 202 bits (102), Expect = 3e-050
Identities = 192/222 (86%)
Strand = Plus / Minus
Query: 378 gccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgcgcaccagg 437
|||||||||||| ||| ||||||||||| ||||||||| | ||||| || | ||||||
Sbjct: 710 gccacggtcccggcccacagcgtgttgtcatacacgatgctcccgcccaccctcaccaga 651
Query: 438 cggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaag 497
|||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||
Sbjct: 650 cggagcagctgctcgtggtaccgcacgtagttgggcttgtcggcgtcgacgaacgcgaag 591
Query: 498 tcgaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcgggg 557
||||| |||||| ||||||||||||||||||| ||| |||||||| | ||||||| |||
Sbjct: 590 tcgaacgcgccgtggttggcctcgtcggcgagcagcgcgtccaggccgtccagcgccggg 531
Query: 558 ccctcgcggaagtcgaccttgcccgccacgccggcgcgctcg 599
|| || ||||||||||||||| ||| |||||||||| ||||
Sbjct: 530 ccttcccggaagtcgaccttgtgcgcgacgccggcgctctcg 489
>gb|CW180237.1|CW180237 104_594_11160530_148_36631_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11160530, DNA
sequence
Length = 742
Score = 196 bits (99), Expect = 2e-048
Identities = 219/259 (84%)
Strand = Plus / Plus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
|||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 484 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 543
Query: 285 acgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctg 344
|||||||| ||| || || | || ||||||||| |||| || ||||||||||||| |
Sbjct: 544 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 603
Query: 345 tcgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttg 404
|| | ||| ||||||||||||||| |||| |||||||||||| ||| |||||||||
Sbjct: 604 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 663
Query: 405 tcgtacacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaag 464
|| ||||||||| | ||||| || | |||||| |||||||||||||||||||| | |
Sbjct: 664 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 723
Query: 465 tagttgggcttgtcggcgt 483
|||||||||||||||||||
Sbjct: 724 tagttgggcttgtcggcgt 742
>gb|BE356814.1|BE356814 DG1_12_D07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 592
Score = 196 bits (99), Expect = 2e-048
Identities = 219/259 (84%)
Strand = Plus / Minus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
|||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 259 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 200
Query: 285 acgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctg 344
|||||||| ||| || || | || ||||||||| |||| || ||||||||||||| |
Sbjct: 199 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 140
Query: 345 tcgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttg 404
|| | ||| ||||||||||||||| |||| |||||||||||| ||| |||||||||
Sbjct: 139 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 80
Query: 405 tcgtacacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaag 464
|| ||||||||| | ||||| || | |||||| |||||||||||||||||||| | |
Sbjct: 79 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggtaccgcacg 20
Query: 465 tagttgggcttgtcggcgt 483
|||||||||||||||||||
Sbjct: 19 tagttgggcttgtcggcgt 1
>gb|CX612853.1|CX612853 GABR1_4_G09.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_4_G09_A002 5', mRNA sequence
Length = 732
Score = 194 bits (98), Expect = 6e-048
Identities = 191/222 (86%)
Strand = Plus / Minus
Query: 378 gccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgcgcaccagg 437
|||||||||||| ||| ||||||||||| ||||||||| | ||||| || | ||||||
Sbjct: 724 gccacggtcccggcccacagcgtgttgtcatacacgatgctcccgcccaccctcaccaga 665
Query: 438 cggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaag 497
|||||||||||||||||||| | ||||||||||| ||||||||||||||| ||||||
Sbjct: 664 cggagcagctgctcgtggtaccgcacgtagttgggctagtcggcgtcgacgaacgcgaag 605
Query: 498 tcgaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcgggg 557
||||| |||||| ||||||||||||||||||| ||| |||||||| | ||||||| |||
Sbjct: 604 tcgaacgcgccgtggttggcctcgtcggcgagcagcgcgtccaggccgtccagcgccggg 545
Query: 558 ccctcgcggaagtcgaccttgcccgccacgccggcgcgctcg 599
|| || ||||||||||||||| ||| |||||||||| ||||
Sbjct: 544 ccttcccggaagtcgaccttgtgcgcgacgccggcgctctcg 503
>gb|CW180236.1|CW180236 104_594_11160530_116_36635_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11160530, DNA
sequence
Length = 688
Score = 190 bits (96), Expect = 1e-046
Identities = 177/204 (86%)
Strand = Plus / Minus
Query: 396 agcgtgttgtcgtacacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtgg 455
||||||||||| ||||||||| | ||||| || | |||||| ||||||||||||||||||
Sbjct: 688 agcgtgttgtcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtgg 629
Query: 456 taattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgccgaggttg 515
|| | ||||||||||||||||||||||||||| ||||||||||| |||||| |||||
Sbjct: 628 taccgcacgtagttgggcttgtcggcgtcgacgaacgcgaagtcgaacgcgccgtggttg 569
Query: 516 gcctcgtcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgacc 575
|||||||||||||| ||| |||||||| | ||||||| ||||| || ||||||||||||
Sbjct: 568 gcctcgtcggcgagcagcgcgtccaggccgtccagcgccgggccttcccggaagtcgacc 509
Query: 576 ttgcccgccacgccggcgcgctcg 599
||| ||| |||||||||| ||||
Sbjct: 508 ttgtgcgcgacgccggcgctctcg 485
>gb|CW249842.1|CW249842 104_711_11223062_148_35048_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223062, DNA
sequence
Length = 695
Score = 188 bits (95), Expect = 4e-046
Identities = 151/170 (88%)
Strand = Plus / Minus
Query: 423 ccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagttgggcttgtcggcg 482
||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct: 695 ccgacgcgcaccaggcggagcagctgctcgtggtaccgcacgtagttgggctngtcggcg 636
Query: 483 tcgacgaaggcgaagtcgaaggcgccgaggttggcctcgtcggcgaggagctcgtccagg 542
|||||||||||||||||||| |||||| ||||||||||||||||||| ||| ||||||||
Sbjct: 635 tcgacgaaggcgaagtcgaacgcgccgtggttggcctcgtcggcgagcagcgcgtccagg 576
Query: 543 ttgcccagcgcggggccctcgcggaagtcgaccttgcccgccacgccggc 592
| ||||||| |||||||| |||||||| |||||| |||||| |||||
Sbjct: 575 tgctccagcgcagggccctcccggaagtccaccttgtgcgccacaccggc 526
>gb|CW184571.1|CW184571 104_600_11165220_116_36688_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11165220, DNA
sequence
Length = 640
Score = 184 bits (93), Expect = 6e-045
Identities = 198/233 (84%)
Strand = Plus / Plus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
|||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 392 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 451
Query: 285 acgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctg 344
|||||||| ||| || || | || ||||||||| |||| || ||||||||||||| |
Sbjct: 452 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 511
Query: 345 tcgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttg 404
|| | ||| ||||||||||||||| |||| |||||||||||| ||| |||||||||
Sbjct: 512 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 571
Query: 405 tcgtacacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggta 457
|| ||||||||| | ||||| || | |||||| ||||||||||||||||||||
Sbjct: 572 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcgtggta 624
>gb|BE361185.1|BE361185 DG1_70_D12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 532
Score = 182 bits (92), Expect = 2e-044
Identities = 146/164 (89%)
Strand = Plus / Minus
Query: 429 cgcaccaggcggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacg 488
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 532 cgcaccaggcggagcagctgctcgtggtaccgcacgtagttgggcttgtcggcgtcgacg 473
Query: 489 aaggcgaagtcgaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgccc 548
|||||||||||||| |||||| ||||||||||||||||||| ||| ||||||||| ||
Sbjct: 472 aaggcgaagtcgaacgcgccgtggttggcctcgtcggcgagcagcgcgtccaggtgctcc 413
Query: 549 agcgcggggccctcgcggaagtcgaccttgcccgccacgccggc 592
||||| |||||||| |||||||| |||||| |||||| |||||
Sbjct: 412 agcgcagggccctcccggaagtccaccttgtgcgccacaccggc 369
>gb|CD430220.1|CD430220 ETH1_17_C09.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_17_C09_A002 5', mRNA sequence
Length = 744
Score = 174 bits (88), Expect = 6e-042
Identities = 187/219 (85%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 382 cggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgcg-caccaggcgg 440
|||||||| ||| ||||||||||| ||||||||| | ||||| || | |||||| |||
Sbjct: 730 cggtcccggcccacagcgtgttgtcatacacgatgctcccgcccacccctcaccagacgg 671
Query: 441 agcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtcg 500
||||||||||||||||| | ||||||||||| ||||||||||||||| |||||||||
Sbjct: 670 agcagctgctcgtggtaccgcacgtagttgggctngtcggcgtcgacgaacgcgaagtcg 611
Query: 501 aaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggccc 560
|| |||||| ||||||||||||||||||| ||| |||||||| | ||||||| |||||
Sbjct: 610 aacgcgccgtggttggcctcgtcggcgagcagcgcgtccaggccgtccagcgccgggcct 551
Query: 561 tcgcggaagtcgaccttgcccgccacgccggcgcgctcg 599
|| ||||||||||||||| ||| |||||||||| ||||
Sbjct: 550 tcccggaagtcgaccttgtgcgcgacgccggcgctctcg 512
>gb|BG103195.1|BG103195 RHIZ2_19_D03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 359
Score = 159 bits (80), Expect = 4e-037
Identities = 191/228 (83%)
Strand = Plus / Minus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
|||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 228 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 169
Query: 285 acgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctg 344
|||||||| ||| || || | || ||||||||| |||| || |||||||||||||
Sbjct: 168 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccga 109
Query: 345 tcgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttg 404
|| | ||| ||||||||||||||| |||| |||||||| ||| ||| |||||||||
Sbjct: 108 tccaggtcattcatgggcgtctccggcggcaacgccacggtgccggcccacagcgtgttg 49
Query: 405 tcgtacacgatggtgccgccgacgcgcaccaggcggagcagctgctcg 452
|| ||||||||| | ||||| || | |||||| |||||||||||||||
Sbjct: 48 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcg 1
>gb|BG103368.1|BG103368 RHIZ2_19_D03.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 411
Score = 159 bits (80), Expect = 4e-037
Identities = 191/228 (83%)
Strand = Plus / Minus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
|||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 228 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 169
Query: 285 acgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctg 344
|||||||| ||| || || | || ||||||||| |||| || |||||||||||||
Sbjct: 168 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccga 109
Query: 345 tcgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttg 404
|| | ||| ||||||||||||||| |||| |||||||| ||| ||| |||||||||
Sbjct: 108 tccaggtcattcatgggcgtctccggcggcaacgccacggtgccggcccacagcgtgttg 49
Query: 405 tcgtacacgatggtgccgccgacgcgcaccaggcggagcagctgctcg 452
|| ||||||||| | ||||| || | |||||| |||||||||||||||
Sbjct: 48 tcatacacgatgctcccgcccaccctcaccagacggagcagctgctcg 1
>gb|CD430207.1|CD430207 ETH1_17_H03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_17_H03_A002 5', mRNA sequence
Length = 681
Score = 157 bits (79), Expect = 1e-036
Identities = 141/162 (87%)
Strand = Plus / Minus
Query: 438 cggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaag 497
|||||||||||||||||||| | ||||||||||| ||||||||||||||| ||||||
Sbjct: 679 cggagcagctgctcgtggtaccgcacgtagttgggctngtcggcgtcgacgaacgcgaag 620
Query: 498 tcgaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcgggg 557
||||| |||||| ||||||||||||||||||| ||| |||||||| | ||||||| |||
Sbjct: 619 tcgaacgcgccgtggttggcctcgtcggcgagcagcgcgtccaggccgtccagcgccggg 560
Query: 558 ccctcgcggaagtcgaccttgcccgccacgccggcgcgctcg 599
|| || ||||||||||||||| ||| |||||||||| ||||
Sbjct: 559 ccttcccggaagtcgaccttgtgcgcgacgccggcgctctcg 518
>gb|BG557655.1|BG557655 EM1_54_G11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 528
Score = 151 bits (76), Expect = 9e-035
Identities = 163/192 (84%)
Strand = Plus / Minus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
|||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 209 catcagacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 150
Query: 285 acgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctg 344
|||||||| ||| || || | || ||||||||| |||| || ||||||||||||| |
Sbjct: 149 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 90
Query: 345 tcgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttg 404
|| | ||| ||||||||||||||| |||| |||||||||||| ||| |||||||||
Sbjct: 89 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 30
Query: 405 tcgtacacgatg 416
|| |||||||||
Sbjct: 29 tcatacacgatg 18
>gb|CD462503.1|CD462503 ETH1_38_E02.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_38_E02_A002 3', mRNA sequence
Length = 552
Score = 127 bits (64), Expect = 1e-027
Identities = 160/192 (83%)
Strand = Plus / Minus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
||||| |||||||||||||| ||||||| || |||||||||||||||||| |||||||
Sbjct: 210 catcaaacgaggcggcggcagatggtgatgcggtcggcgatggcgagctggaagacctcg 151
Query: 285 acgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctg 344
|||||||| ||| || || | || ||||||||| |||| || ||||||||||||| |
Sbjct: 150 acgcgctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgg 91
Query: 345 tcgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttg 404
|| | ||| ||||||||||||||| |||| |||||||||||| ||| |||||||||
Sbjct: 90 tccaggtcattcatgggcgtctccggcggcaacgccacggtcccggcccacagcgtgttg 31
Query: 405 tcgtacacgatg 416
|| |||||||||
Sbjct: 30 tcatacacgatg 19
>gb|CN137417.1|CN137417 OX1_57_D04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_D04_A002 3', mRNA sequence
Length = 531
Score = 119 bits (60), Expect = 3e-025
Identities = 159/192 (82%)
Strand = Plus / Minus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
|||||||||||||||||||| ||||||| ||| ||||||||||||||||| || |||||
Sbjct: 198 catcagacgaggcggcggcagatggtgatgccctcggcgatggcgagctggcaaacctcg 139
Query: 285 acgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctg 344
|| ||||| ||| | || | || ||||||||| |||| || ||||||||||||| |
Sbjct: 138 acccgctcatccttaaacagcctgacattgaggtccttgatcgccgccgagaacctccgg 79
Query: 345 tcgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttg 404
|| | ||| ||||||||||||||| |||| |||||||||||| ||| |||||||||
Sbjct: 78 tccaggtcattcatgggcgtctccgggggcaacgccacggtcccggcccacagcgtgttg 19
Query: 405 tcgtacacgatg 416
|| |||||||||
Sbjct: 18 tcatacacgatg 7
>gb|CW247562.1|CW247562 104_708_11221843_116_35017_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221843, DNA
sequence
Length = 570
Score = 117 bits (59), Expect = 1e-024
Identities = 107/123 (86%)
Strand = Plus / Plus
Query: 473 cttgtcggcgtcgacgaaggcgaagtcgaaggcgccgaggttggcctcgtcggcgaggag 532
|||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| ||
Sbjct: 339 cttgtcggcgtcgacgaacgcgaagtcgaaggcgccgaggttgctctcggcggcgagcag 398
Query: 533 ctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgcccgccacgccggc 592
| ||||||||| || |||| ||||||| ||||||||||||||| ||| ||||||||
Sbjct: 399 cgcgtccaggtgctccgacgcgaggccctcccggaagtcgaccttgtgcgcgacgccggc 458
Query: 593 gcg 595
|||
Sbjct: 459 gcg 461
Score = 52.0 bits (26), Expect = 6e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 227 tcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaac 286
|||||||| ||||||||| | |||| ||||||||||| || |||||| |||||||||
Sbjct: 93 tcagacgacgcggcggcagagcgtgatgccgtcggcgacggggagctgcacgacctcaac 152
Query: 287 gcgctcgtccgcgg 300
|||| |||| ||||
Sbjct: 153 gcgcgcgtcggcgg 166
>gb|CW463139.1|CW463139 fsbb001f211j12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f211j12, DNA
sequence
Length = 739
Score = 117 bits (59), Expect = 1e-024
Identities = 107/123 (86%)
Strand = Plus / Minus
Query: 473 cttgtcggcgtcgacgaaggcgaagtcgaaggcgccgaggttggcctcgtcggcgaggag 532
|||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| ||
Sbjct: 617 cttgtcggcgtcgacgaacgcgaagtcgaaggcgccgaggttgctctcggcggcgagcag 558
Query: 533 ctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgcccgccacgccggc 592
| ||||||||| || |||| ||||||| ||||||||||||||| ||| ||||||||
Sbjct: 557 cgcgtccaggtgctccgacgcgaggccctcccggaagtcgaccttgtgcgcgacgccggc 498
Query: 593 gcg 595
|||
Sbjct: 497 gcg 495
>gb|BG559614.1|BG559614 RHIZ2_71_B07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 294
Score = 113 bits (57), Expect = 2e-023
Identities = 147/177 (83%)
Strand = Plus / Minus
Query: 230 gacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgcg 289
||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |||||
Sbjct: 196 gacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcgacgcg 137
Query: 290 ctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcgat 349
||| ||| || || | || ||||||||| |||| || ||||||||||||| || |
Sbjct: 136 ctcatccttagacagcctgacattgaggtccttgatcgccgccgagaacctccgatccag 77
Query: 350 gtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtc 406
||| ||||||||||||||| |||| |||||||| ||| ||| |||||||||||
Sbjct: 76 gtcattcatgggcgtctccggcggcaacgccacggtgccggcccacagcgtgttgtc 20
>gb|AW923175.1|AW923175 DG1_49_A09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 404
Score = 109 bits (55), Expect = 3e-022
Identities = 148/179 (82%)
Strand = Plus / Minus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
||||| |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 179 catcaaacgaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 120
Query: 285 acgcgctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctg 344
|||||||| ||| | || | || ||||||||| |||| || ||||||||||||| |
Sbjct: 119 acgcgctcatccttaaacagcctgacattgaggtccttgatcgccgccgagaacctccgg 60
Query: 345 tcgatgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgtt 403
|| | ||| ||||||||||||||| |||| ||||| |||||| ||| ||||||||
Sbjct: 59 tccaggtcattcatgggcgtctccggcggcaacgccaccgtcccggcccacagcgtgtt 1
>gb|CF432712.1|CF432712 NIT1_18_A03.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_18_A03_A002 5', mRNA sequence
Length = 631
Score = 105 bits (53), Expect = 5e-021
Identities = 101/117 (86%)
Strand = Plus / Minus
Query: 483 tcgacgaaggcgaagtcgaaggcgccgaggttggcctcgtcggcgaggagctcgtccagg 542
|||||||| ||||||||||| |||||| ||||||||||||||||||| ||| ||||||||
Sbjct: 631 tcgacgaacgcgaagtcgaacgcgccgtggttggcctcgtcggcgagcagcgcgtccagg 572
Query: 543 ttgcccagcgcggggccctcgcggaagtcgaccttgcccgccacgccggcgcgctcg 599
| ||||||| |||| || ||||||||||||||| ||| |||||||||| ||||
Sbjct: 571 ccgtccagcgccgggcgttcccggaagtcgaccttgtgcgcgacgccggcgctctcg 515
>gb|BG559195.1|BG559195 RHIZ2_55_G08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 449
Score = 93.7 bits (47), Expect = 2e-017
Identities = 116/139 (83%)
Strand = Plus / Minus
Query: 440 gagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtc 499
||||||| |||||||||| |||| ||||||| |||||||||||| |||||| |||||||
Sbjct: 237 gagcagccgctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 178
Query: 500 gaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggcc 559
||| | ||| |||| ||||||||||| ||| ||||| ||| | |||||||||||
Sbjct: 177 gaacgacccgtggttcttctcgtcggcgatgaggtcgtcgaggacggggagcgcggggcc 118
Query: 560 ctcgcggaagtcgaccttg 578
|||||||||||||| ||||
Sbjct: 117 ctcgcggaagtcgatcttg 99
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 236 gcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgcgctcgtc 295
||||||||| | ||||||||||||| ||| || |||||| |||| ||| |||||||||||
Sbjct: 441 gcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcgctcgtc 382
Query: 296 cgcgg 300
||||
Sbjct: 381 ggcgg 377
>gb|BE353027.1|BE353027 DG1_2_H03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 436
Score = 87.7 bits (44), Expect = 1e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 225 catcagacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctca 284
||||| || ||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct: 84 catcaaacaaggcggcggcagatggtgatgccgtcggcgatggcgagctggcagacctcg 25
Query: 285 acgcgctc 292
||||||||
Sbjct: 24 acgcgctc 17
>gb|BE125749.1|BE125749 DG1_55_H11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 464
Score = 85.7 bits (43), Expect = 4e-015
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 440 gagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtc 499
||||||| | |||||||| |||| ||||||| |||||||||||| |||||| |||||||
Sbjct: 438 gagcagccggtcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 379
Query: 500 gaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggcc 559
||| | ||| |||| ||||||||||| ||| ||||| ||| | |||||||||||
Sbjct: 378 gaacgacccgtggttcttctcgtcggcgatgaggtcgtcgaggacggggagcgcggggcc 319
Query: 560 ctcgcggaagtcgaccttg 578
|||||||||||||| ||||
Sbjct: 318 ctcgcggaagtcgatcttg 300
>gb|BG356843.1|BG356843 OV2_10_F11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 541
Score = 85.7 bits (43), Expect = 4e-015
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 440 gagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtc 499
||||||| | |||||||| |||| ||||||| |||||||||||| |||||| |||||||
Sbjct: 201 gagcagccggtcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 142
Query: 500 gaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggcc 559
||| | ||| |||| ||||||||||| ||| ||||| ||| | |||||||||||
Sbjct: 141 gaacgacccgtggttcttctcgtcggcgatgaggtcgtcgaggacggggagcgcggggcc 82
Query: 560 ctcgcggaagtcgaccttg 578
|||||||||||||| ||||
Sbjct: 81 ctcgcggaagtcgatcttg 63
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 236 gcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgcgctcgtc 295
||||||||| | ||||||||||||| ||| || |||||| |||| ||| |||||||||||
Sbjct: 405 gcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcgctcgtc 346
Query: 296 cgcgg 300
||||
Sbjct: 345 ggcgg 341
>gb|CD429550.1|CD429550 ETH1_14_C02.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_14_C02_A002 3', mRNA sequence
Length = 604
Score = 85.7 bits (43), Expect = 4e-015
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 440 gagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtc 499
||||||| | |||||||| |||| ||||||| |||||||||||| |||||| |||||||
Sbjct: 167 gagcagccggtcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 108
Query: 500 gaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggcc 559
||| | ||| |||| ||||||||||| ||| ||||| ||| | |||||||||||
Sbjct: 107 gaacgacccgtggttcttctcgtcggcgatgaggtcgtcgaggacggggagcgcggggcc 48
Query: 560 ctcgcggaagtcgaccttg 578
|||||||||||||| ||||
Sbjct: 47 ctcgcggaagtcgatcttg 29
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 236 gcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgcgctcgtc 295
||||||||| | ||||||||||||| ||| || |||||| |||| ||| |||||||||||
Sbjct: 371 gcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcgctcgtc 312
Query: 296 cgcgg 300
||||
Sbjct: 311 ggcgg 307
>gb|CF427166.1|CF427166 PH1_4_H04.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_4_H04_A002 3', mRNA sequence
Length = 573
Score = 85.7 bits (43), Expect = 4e-015
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 440 gagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtc 499
||||||| | |||||||| |||| ||||||| |||||||||||| |||||| |||||||
Sbjct: 142 gagcagccggtcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 83
Query: 500 gaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggcc 559
||| | ||| |||| ||||||||||| ||| ||||| ||| | |||||||||||
Sbjct: 82 gaacgacccgtggttcttctcgtcggcgatgaggtcgtcgaggacggggagcgcggggcc 23
Query: 560 ctcgcggaagtcgaccttg 578
|||||||||||||| ||||
Sbjct: 22 ctcgcggaagtcgatcttg 4
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 236 gcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgcgctcgtc 295
||||||||| | ||||||||||||| ||| || |||||| |||| ||| |||||||||||
Sbjct: 346 gcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcgctcgtc 287
Query: 296 cgcgg 300
||||
Sbjct: 286 ggcgg 282
>gb|CF433879.1|CF433879 NIT1_30_C03.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_30_C03_A002 5', mRNA sequence
Length = 670
Score = 85.7 bits (43), Expect = 4e-015
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 440 gagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtc 499
||||||| | |||||||| |||| ||||||| |||||||||||| |||||| |||||||
Sbjct: 669 gagcagccggtcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 610
Query: 500 gaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggcc 559
||| | ||| |||| ||||||||||| ||| ||||| ||| | |||||||||||
Sbjct: 609 gaacgacccgtggttcttctcgtcggcgatgaggtcgtcgaggacggggagcgcggggcc 550
Query: 560 ctcgcggaagtcgaccttg 578
|||||||||||||| ||||
Sbjct: 549 ctcgcggaagtcgatcttg 531
>gb|CF480279.1|CF480279 POL1_64_F12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_64_F12_A002 5', mRNA sequence
Length = 649
Score = 85.7 bits (43), Expect = 4e-015
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 440 gagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtc 499
||||||| | |||||||| |||| ||||||| |||||||||||| |||||| |||||||
Sbjct: 438 gagcagccggtcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 497
Query: 500 gaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggcc 559
||| | ||| |||| ||||||||||| ||| ||||| ||| | |||||||||||
Sbjct: 498 gaacgacccgtggttcttctcgtcggcgatgaggtcgtcgaggacggggagcgcggggcc 557
Query: 560 ctcgcggaagtcgaccttg 578
|||||||||||||| ||||
Sbjct: 558 ctcgcggaagtcgatcttg 576
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 236 gcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgcgctcgtc 295
||||||||| | ||||||||||||| ||| || |||||| |||| ||| |||||||||||
Sbjct: 234 gcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcgctcgtc 293
Query: 296 cgcgg 300
||||
Sbjct: 294 ggcgg 298
>gb|CN128942.1|CN128942 RHOH1_32_C05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_32_C05_A002 5', mRNA sequence
Length = 826
Score = 85.7 bits (43), Expect = 4e-015
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 440 gagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtc 499
||||||| | |||||||| |||| ||||||| |||||||||||| |||||| |||||||
Sbjct: 562 gagcagccggtcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 503
Query: 500 gaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggcc 559
||| | ||| |||| ||||||||||| ||| ||||| ||| | |||||||||||
Sbjct: 502 gaacgacccgtggttcttctcgtcggcgatgaggtcgtcgaggacggggagcgcggggcc 443
Query: 560 ctcgcggaagtcgaccttg 578
|||||||||||||| ||||
Sbjct: 442 ctcgcggaagtcgatcttg 424
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 236 gcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgcgctcgtc 295
||||||||| | |||||||| |||| ||| || |||||| |||| ||| |||||||||||
Sbjct: 766 gcggcggcagagggtgacgctgtcgccgacggggagctggcagatctcgacgcgctcgtc 707
Query: 296 cgcgg 300
||||
Sbjct: 706 ggcgg 702
>gb|CN137990.1|CN137990 OX1_61_C04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_C04_A002 3', mRNA sequence
Length = 716
Score = 85.7 bits (43), Expect = 4e-015
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 440 gagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtc 499
||||||| | |||||||| |||| ||||||| |||||||||||| |||||| |||||||
Sbjct: 209 gagcagccggtcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 150
Query: 500 gaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggcc 559
||| | ||| |||| ||||||||||| ||| ||||| ||| | |||||||||||
Sbjct: 149 gaacgacccgtggttcttctcgtcggcgatgaggtcgtcaaggacggggagcgcggggcc 90
Query: 560 ctcgcggaagtcgaccttg 578
|||||||||||||| ||||
Sbjct: 89 ctcgcggaagtcgatcttg 71
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 236 gcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgcgctcgtc 295
||||||||| | ||||||||||||| ||| || |||||| |||| ||| |||||||||||
Sbjct: 413 gcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcgctcgtc 354
Query: 296 cgcgg 300
||||
Sbjct: 353 ggcgg 349
>gb|CN138077.1|CN138077 OX1_61_C04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_C04_A002 5', mRNA sequence
Length = 809
Score = 85.7 bits (43), Expect = 4e-015
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 440 gagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtc 499
||||||| | |||||||| |||| ||||||| |||||||||||| |||||| |||||||
Sbjct: 688 gagcagccggtcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 629
Query: 500 gaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggcc 559
||| | ||| |||| ||||||||||| ||| ||||| ||| | |||||||||||
Sbjct: 628 gaacgacccgtggttcttctcgtcggcgatgaggtcgtcgaggacggggagcgcggggcc 569
Query: 560 ctcgcggaagtcgaccttg 578
|||||||||||||| ||||
Sbjct: 568 ctcgcggaagtcgatcttg 550
>gb|BE360322.1|BE360322 DG1_62_C12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 572
Score = 83.8 bits (42), Expect = 2e-014
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 440 gagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtc 499
||||||| | |||||||| |||| ||||||| |||||||||||| |||||| |||||||
Sbjct: 135 gagcagccggtcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 76
Query: 500 gaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggcc 559
||| | ||| |||| ||||||||||| ||| ||||| ||| | |||||||||||
Sbjct: 75 gaacgacccgtggttcttctcgtcggcgatgaggtcgtcgaggacggggagcgcggggcc 16
Query: 560 ctcgcggaagtcga 573
||||||||||||||
Sbjct: 15 ctcgcggaagtcga 2
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 236 gcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgcgctcgtc 295
||||||||| | ||||||||||||| ||| || |||||| |||| ||| |||||||||||
Sbjct: 339 gcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcgctcgtc 280
Query: 296 cgcgg 300
||||
Sbjct: 279 ggcgg 275
>gb|CF428636.1|CF428636 PH1_9_G09.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_9_G09_A002 5', mRNA sequence
Length = 756
Score = 79.8 bits (40), Expect = 3e-013
Identities = 114/139 (82%)
Strand = Plus / Minus
Query: 440 gagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtc 499
||||||| | |||||||| |||| ||||||| || ||||||||| |||||| |||||||
Sbjct: 691 gagcagccggtcgtggtagttgaggtagttgtcctngtcggcgtccacgaagacgaagtc 632
Query: 500 gaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggcc 559
||| | ||| |||| ||||||||||| ||| ||||| ||| | |||||||||||
Sbjct: 631 gaacgacccgtggttcttctcgtcggcgatgaggtcgtcgaggacggggagcgcggggcc 572
Query: 560 ctcgcggaagtcgaccttg 578
|||||||||||||| ||||
Sbjct: 571 ctcgcggaagtcgatcttg 553
>gb|CN123933.1|CN123933 RHOH1_1_D01.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_1_D01_A002 5', mRNA sequence
Length = 702
Score = 79.8 bits (40), Expect = 3e-013
Identities = 114/139 (82%)
Strand = Plus / Minus
Query: 440 gagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtc 499
||||||| | |||||||| |||| ||||||| || ||||||||| |||||| |||||||
Sbjct: 699 gagcagccggtcgtggtagttgaggtagttgtcctngtcggcgtccacgaagacgaagtc 640
Query: 500 gaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggcc 559
||| | ||| |||| ||||||||||| ||| ||||| ||| | |||||||||||
Sbjct: 639 gaacgacccgtggttcttctcgtcggcgatgaggtcgtcgaggacggggagcgcggggcc 580
Query: 560 ctcgcggaagtcgaccttg 578
|||||||||||||| ||||
Sbjct: 579 ctcgcggaagtcgatcttg 561
>gb|CN127149.1|CN127149 RHOH1_21_G07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_G07_A002 3', mRNA sequence
Length = 819
Score = 77.8 bits (39), Expect = 1e-012
Identities = 114/139 (82%)
Strand = Plus / Minus
Query: 440 gagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtc 499
||||||| | |||||||| |||| ||||||| |||||||||||| |||||| |||||||
Sbjct: 334 gagcagccggtcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 275
Query: 500 gaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggcc 559
||| | ||| ||| ||||||||||| ||| ||||| ||| | |||||||||||
Sbjct: 274 gaacgacccgtggtccttctcgtcggcgatgaggtcgtcgaggacggggagcgcggggcc 215
Query: 560 ctcgcggaagtcgaccttg 578
|||||||||||||| ||||
Sbjct: 214 ctcgcggaagtcgatcttg 196
Score = 44.1 bits (22), Expect = 0.015
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 236 gcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgcg 289
||||||||| | ||||||||||||| ||| || |||||| |||| ||| |||||
Sbjct: 493 gcggcggcagagggtgacgccgtcgccgacggggagctggcagatctcgacgcg 440
>gb|CN128863.1|CN128863 RHOH1_32_C05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_32_C05_A002 3', mRNA sequence
Length = 752
Score = 77.8 bits (39), Expect = 1e-012
Identities = 114/139 (82%)
Strand = Plus / Minus
Query: 440 gagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtc 499
||||||| | |||||||| |||| ||||||| |||||||||||| |||||| |||||||
Sbjct: 316 gagcagccggtcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtc 257
Query: 500 gaaggcgccgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggcc 559
||| | ||| |||| ||||||||||| ||| ||||| ||| | |||||||||||
Sbjct: 256 gaacgacccgtggttcttctcgtcggcgatgaggtcgtcaaggacggggagcgcggggcc 197
Query: 560 ctcgcggaagtcgaccttg 578
||| |||||||||| ||||
Sbjct: 196 ctcccggaagtcgatcttg 178
Score = 42.1 bits (21), Expect = 0.058
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 236 gcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgcgctcgtc 295
||||||||| | |||||||||||| ||| || |||||| ||| ||| |||||||||||
Sbjct: 520 gcggcggcagagggtgacgccgtccccgacggggagctgggagatctcgacgcgctcgtc 461
Query: 296 cgcgg 300
||||
Sbjct: 460 ggcgg 456
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 227,587
Number of Sequences: 832831
Number of extensions: 227587
Number of successful extensions: 75986
Number of sequences better than 0.5: 99
Number of HSP's better than 0.5 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75698
Number of HSP's gapped (non-prelim): 221
length of query: 599
length of database: 491,359,669
effective HSP length: 19
effective length of query: 580
effective length of database: 475,535,880
effective search space: 275810810400
effective search space used: 275810810400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)