BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943843.2.1
(2639 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN128853.1|CN128853 RHOH1_32_B04.b1_A002 Acid- and alkal... 995 0.0
gb|BG556971.1|BG556971 EM1_40_H11.b1_A002 Embryo 1 (EM1) So... 819 0.0
gb|CF072120.1|CF072120 FE1_20_E07.g2_A002 Iron-deficient se... 819 0.0
gb|CF072056.1|CF072056 FE1_20_E07.b1_A002 Iron-deficient se... 775 0.0
gb|CD423503.1|CD423503 SA1_23_B12.g1_A002 Salicylic acid-tr... 609 e-172
gb|BG556738.1|BG556738 EM1_40_H11.g1_A002 Embryo 1 (EM1) So... 541 e-151
gb|BG054142.1|BG054142 OV2_1_G05.b1_A002 Ovary 2 (OV2) Sorg... 494 e-137
gb|CW315084.1|CW315084 104_806_11472171_148_35829_016 Sorgh... 426 e-117
gb|CW116018.1|CW116018 104_491_11106879_148_34594_056 Sorgh... 295 1e-077
gb|CW790436.1|CW790436 SP__Ba0069A03.f SP__Ba Sorghum propi... 295 1e-077
gb|CW438746.1|CW438746 fsbb001f156i14k0 Sorghum methylation... 248 2e-063
gb|CW464816.1|CW464816 fsbb001f215e08f0 Sorghum methylation... 234 3e-059
gb|CW233201.1|CW233201 104_686_11213250_148_37371_075 Sorgh... 216 8e-054
gb|CW323420.1|CW323420 104_817_11476622_116_35958_053 Sorgh... 216 8e-054
gb|CW199755.1|CW199755 104_625_11183680_148_36859_064 Sorgh... 159 2e-036
gb|CW197825.1|CW197825 104_622_11181885_148_36830_091 Sorgh... 141 4e-031
gb|CW120709.1|CW120709 104_498_11109484_148_34656_012 Sorgh... 139 1e-030
gb|CW101113.1|CW101113 104_468_11004465_116_34398_035 Sorgh... 135 2e-029
gb|CW315083.1|CW315083 104_806_11472171_116_35825_016 Sorgh... 127 6e-027
gb|CW438745.1|CW438745 fsbb001f156i14f0 Sorghum methylation... 113 9e-023
gb|CW486490.1|CW486490 fsbb001f249m10f0 Sorghum methylation... 107 5e-021
gb|CW499171.1|CW499171 fsbb001f293m17f0 Sorghum methylation... 107 5e-021
gb|CW197824.1|CW197824 104_622_11181885_116_36829_091 Sorgh... 101 3e-019
gb|CW213536.1|CW213536 104_645_11191604_116_37037_078 Sorgh... 96 2e-017
gb|BG050509.1|BG050509 FM1_70_C08.g1_A003 Floral-Induced Me... 78 5e-012
gb|CW323421.1|CW323421 104_817_11476622_148_35959_053 Sorgh... 74 7e-011
gb|AW922655.1|AW922655 DG1_20_A04.g1_A002 Dark Grown 1 (DG1... 74 7e-011
gb|CD222601.1|CD222601 CCC1_23_C02.b1_A007 Callus culture/c... 74 7e-011
gb|CD426524.1|CD426524 SA1_21_D08.b1_A002 Salicylic acid-tr... 74 7e-011
gb|CD461963.1|CD461963 SA1_36_D07.b1_A002 Salicylic acid-tr... 74 7e-011
gb|CN135793.1|CN135793 OX1_39_B01.b1_A002 Oxidatively-stres... 74 7e-011
gb|CC059607.1|CC059607 ii25d06.b1 WGS-SbicolorF (DH5a methy... 72 3e-010
gb|CW465655.1|CW465655 fsbb001f216i08f0 Sorghum methylation... 70 1e-009
gb|BZ781222.1|BZ781222 ii25d06.g1 WGS-SbicolorF (DH5a methy... 68 5e-009
gb|CW101114.1|CW101114 104_468_11004465_148_34394_035 Sorgh... 68 5e-009
gb|CW044217.1|CW044217 104_280_10508825_114_30262 Sorghum m... 66 2e-008
gb|CW109708.1|CW109708 104_482_11103275_116_34509_046 Sorgh... 66 2e-008
gb|CW162697.1|CW162697 104_570_11151074_116_36448_013 Sorgh... 66 2e-008
gb|CW464177.1|CW464177 fsbb001f213e18f0 Sorghum methylation... 66 2e-008
gb|BI099366.1|BI099366 IP1_41_B11.g1_A002 Immature pannicle... 64 7e-008
gb|BI099594.1|BI099594 IP1_44_C02.g1_A002 Immature pannicle... 64 7e-008
gb|BM331266.1|BM331266 PIC1_71_H01.g1_A002 Pathogen-infecte... 64 7e-008
gb|CF430980.1|CF430980 NIT1_4_B03.b1_A002 Nitrogen-deficien... 64 7e-008
gb|BG159162.1|BG159162 RHIZ2_28_H09.b1_A003 Rhizome2 (RHIZ2... 62 3e-007
gb|BG159163.1|BG159163 RHIZ2_28_H10.b1_A003 Rhizome2 (RHIZ2... 62 3e-007
gb|BG159164.1|BG159164 RHIZ2_28_H11.b1_A003 Rhizome2 (RHIZ2... 62 3e-007
gb|BG557768.1|BG557768 EM1_56_G11.g1_A002 Embryo 1 (EM1) So... 62 3e-007
gb|CW171813.1|CW171813 104_582_11155940_148_36527_068 Sorgh... 60 1e-006
gb|CW228873.1|CW228873 104_670_11207006_116_37258_063 Sorgh... 60 1e-006
gb|CL184986.1|CL184986 104_398_10899222_114_32367_019 Sorgh... 56 2e-005
gb|CW266955.1|CW266955 104_736_11232716_148_35288_066 Sorgh... 56 2e-005
gb|CW293504.1|CW293504 104_774_11414692_116_35597_014 Sorgh... 56 2e-005
gb|CW293505.1|CW293505 104_774_11414692_148_35601_014 Sorgh... 56 2e-005
gb|CW375953.1|CW375953 fsbb001f053j05k0 Sorghum methylation... 56 2e-005
gb|BF587909.1|BF587909 FM1_34_A02.g1_A003 Floral-Induced Me... 56 2e-005
gb|BG049882.1|BG049882 FM1_67_C01.g1_A003 Floral-Induced Me... 56 2e-005
gb|BG356921.1|BG356921 OV2_11_F07.g1_A002 Ovary 2 (OV2) Sor... 56 2e-005
gb|BG488079.1|BG488079 RHIZ2_63_A09.g1_A003 Rhizome2 (RHIZ2... 56 2e-005
gb|BG559866.1|BG559866 RHIZ2_74_E12.g1_A003 Rhizome2 (RHIZ2... 56 2e-005
gb|BG560750.1|BG560750 RHIZ2_64_C10.g1_A003 Rhizome2 (RHIZ2... 56 2e-005
gb|CD223639.1|CD223639 CCC1_29_A02.b1_A007 Callus culture/c... 56 2e-005
gb|CD235521.1|CD235521 SS1_36_H07.b1_A012 Salt-stressed see... 56 2e-005
gb|CD423393.1|CD423393 SA1_23_B12.b1_A002 Salicylic acid-tr... 56 2e-005
gb|CN137576.1|CN137576 OX1_58_E08.b1_A002 Oxidatively-stres... 56 2e-005
gb|DN551959.1|DN551959 pSPR-RT-MR-H2_A11_S206 pSPR Sorghum ... 56 2e-005
gb|BG052723.1|BG052723 RHIZ2_28_H09.g1_A003 Rhizome2 (RHIZ2... 54 7e-005
gb|BI074338.1|BI074338 IP1_14_F07.g1_A002 Immature pannicle... 54 7e-005
gb|BI074339.1|BI074339 IP1_14_F08.g1_A002 Immature pannicle... 54 7e-005
gb|CW047151.1|CW047151 104_284_10512565_115_30220 Sorghum m... 52 3e-004
gb|CW187983.1|CW187983 104_607_11172776_116_36724_022 Sorgh... 52 3e-004
gb|CW300453.1|CW300453 104_783_11463667_148_36246_066 Sorgh... 52 3e-004
gb|CW305843.1|CW305843 104_791_11466522_148_36276_075 Sorgh... 52 3e-004
gb|CW420473.1|CW420473 fsbb001f126m22k0 Sorghum methylation... 52 3e-004
gb|CW460643.1|CW460643 fsbb001f207o21f0 Sorghum methylation... 52 3e-004
gb|AW672452.1|AW672452 LG1_359_E09.g1_A002 Light Grown 1 (L... 52 3e-004
gb|BI076386.1|BI076386 IP1_26_G02.g1_A002 Immature pannicle... 52 3e-004
gb|BI212076.1|BI212076 IP1_61_C12.g1_A002 Immature pannicle... 52 3e-004
gb|CF485047.1|CF485047 POL1_29_D04.b1_A002 Pollen Sorghum b... 52 3e-004
gb|CW187984.1|CW187984 104_607_11172776_148_36723_022 Sorgh... 48 0.004
gb|CW248391.1|CW248391 104_709_11222272_148_35026_052 Sorgh... 48 0.004
gb|CW420472.1|CW420472 fsbb001f126m22f0 Sorghum methylation... 48 0.004
gb|CL166440.1|CL166440 104_362_10809377_116_31799_209 Sorgh... 46 0.017
gb|CW045583.1|CW045583 104_282_10509660_114_30231 Sorghum m... 46 0.017
gb|CW116017.1|CW116017 104_491_11106879_116_34598_056 Sorgh... 46 0.017
gb|CW262746.1|CW262746 104_730_11230250_148_35222_007 Sorgh... 46 0.017
gb|CW304679.1|CW304679 104_789_11465910_116_35702_019 Sorgh... 46 0.017
gb|CW304680.1|CW304680 104_789_11465910_148_35706_019 Sorgh... 46 0.017
gb|CW304761.1|CW304761 104_789_11465952_116_35704_084 Sorgh... 46 0.017
gb|CW338377.1|CW338377 104_838_11484713_148_36127_069 Sorgh... 46 0.017
gb|CW454931.1|CW454931 fsbb001f199j17f0 Sorghum methylation... 46 0.017
gb|CW454932.1|CW454932 fsbb001f199j17k0 Sorghum methylation... 46 0.017
gb|CW484430.1|CW484430 fsbb001f246j05k0 Sorghum methylation... 46 0.017
gb|BG559053.1|BG559053 RHIZ2_54_A08.g1_A003 Rhizome2 (RHIZ2... 46 0.017
gb|BI140944.1|BI140944 IP1_41_B11.b1_A002 Immature pannicle... 46 0.017
gb|BI141184.1|BI141184 IP1_44_C02.b1_A002 Immature pannicle... 46 0.017
gb|BI141628.1|BI141628 IP1_54_H08.b1_A002 Immature pannicle... 46 0.017
gb|BI211806.1|BI211806 IP1_61_C12.b1_A002 Immature pannicle... 46 0.017
gb|CW047150.1|CW047150 104_284_10512565_114_30219 Sorghum m... 44 0.066
gb|CW208624.1|CW208624 104_638_11188769_148_36978_075 Sorgh... 44 0.066
gb|CW255036.1|CW255036 104_719_11226007_116_35122_024 Sorgh... 44 0.066
gb|CW317759.1|CW317759 104_809_11473585_116_35859_003 Sorgh... 44 0.066
gb|CW387100.1|CW387100 fsbb001f071e24f0 Sorghum methylation... 44 0.066
gb|BI098680.1|BI098680 IP1_35_E11.g1_A002 Immature pannicle... 44 0.066
gb|CF481957.1|CF481957 POL1_75_H11.b1_A002 Pollen Sorghum b... 44 0.066
gb|AZ922604.1|AZ922604 SLCot2A09 Sorghum bicolor SLCot Sorg... 42 0.26
gb|CL174487.1|CL174487 104_379_10891661_116_31769_029 Sorgh... 42 0.26
gb|CL179798.1|CL179798 104_389_10895554_116_31908_082 Sorgh... 42 0.26
gb|CL179799.1|CL179799 104_389_10895554_148_31907_082 Sorgh... 42 0.26
gb|CW039120.1|CW039120 104_271_10505314_115_30388 Sorghum m... 42 0.26
gb|CW041874.1|CW041874 104_275_10506805_114_30284 Sorghum m... 42 0.26
gb|CW063447.1|CW063447 104_309_10522011_114_30134 Sorghum m... 42 0.26
gb|CW063448.1|CW063448 104_309_10522011_115_30140 Sorghum m... 42 0.26
gb|CW063451.1|CW063451 104_309_10522013_115_30140 Sorghum m... 42 0.26
gb|CW075061.1|CW075061 104_354_10806335_114_31830_239 Sorgh... 42 0.26
gb|CW119032.1|CW119032 104_495_11108532_116_34627_036 Sorgh... 42 0.26
gb|CW149185.1|CW149185 104_548_11142351_116_36285_062 Sorgh... 42 0.26
gb|CW149186.1|CW149186 104_548_11142351_148_36286_062 Sorgh... 42 0.26
gb|CW151970.1|CW151970 104_553_11144236_116_36325_016 Sorgh... 42 0.26
gb|CW151971.1|CW151971 104_553_11144236_148_36330_016 Sorgh... 42 0.26
gb|CW192987.1|CW192987 104_615_11179322_116_36776_005 Sorgh... 42 0.26
gb|CW209349.1|CW209349 104_639_11189193_116_37080_041 Sorgh... 42 0.26
gb|CW209350.1|CW209350 104_639_11189193_148_37081_041 Sorgh... 42 0.26
gb|CW212258.1|CW212258 104_643_11190928_116_37021_058 Sorgh... 42 0.26
gb|CW228498.1|CW228498 104_668_11206404_116_37254_042 Sorgh... 42 0.26
gb|CW300983.1|CW300983 104_784_11463964_116_36260_006 Sorgh... 42 0.26
gb|CW300984.1|CW300984 104_784_11463964_148_36259_006 Sorgh... 42 0.26
gb|CW323908.1|CW323908 104_818_11476879_148_35908_028 Sorgh... 42 0.26
gb|CW373336.1|CW373336 fsbb001f049k18f0 Sorghum methylation... 42 0.26
gb|CW377086.1|CW377086 fsbb001f055e01f0 Sorghum methylation... 42 0.26
gb|CW407330.1|CW407330 fsbb001f100m04k0 Sorghum methylation... 42 0.26
gb|CW414010.1|CW414010 fsbb001f113h04k0 Sorghum methylation... 42 0.26
gb|CW423831.1|CW423831 fsbb001f133n14f0 Sorghum methylation... 42 0.26
gb|CW425909.1|CW425909 fsbb001f137b03k0 Sorghum methylation... 42 0.26
gb|CW441090.1|CW441090 fsbb001f160a20f0 Sorghum methylation... 42 0.26
gb|CW464817.1|CW464817 fsbb001f215e08k0 Sorghum methylation... 42 0.26
gb|AW284352.2|AW284352 LG1_275_D12.g1_A002 Light Grown 1 (L... 42 0.26
gb|AW563693.1|AW563693 LG1_248_H03.g1_A002 Light Grown 1 (L... 42 0.26
gb|AW747157.1|AW747157 WS1_66_H11.b1_A002 Water-stressed 1 ... 42 0.26
gb|BE918959.1|BE918959 FM1_2_C11.b1_A003 Floral-Induced Mer... 42 0.26
gb|BF587924.1|BF587924 FM1_34_E10.g1_A003 Floral-Induced Me... 42 0.26
gb|BI098965.1|BI098965 IP1_35_E11.b1_A002 Immature pannicle... 42 0.26
gb|BI099556.1|BI099556 IP1_43_G02.g1_A002 Immature pannicle... 42 0.26
gb|BI245910.1|BI245910 IP1_65_B03.b1_A002 Immature pannicle... 42 0.26
gb|CF072890.1|CF072890 FE1_26_E09.g1_A002 Iron-deficient se... 42 0.26
gb|CF073150.1|CF073150 FE1_28_G06.b1_A002 Iron-deficient se... 42 0.26
gb|CF073594.1|CF073594 FE1_11_D06.b1_A002 Iron-deficient se... 42 0.26
gb|CN135875.1|CN135875 OX1_39_B01.g1_A002 Oxidatively-stres... 42 0.26
gb|CX611331.1|CX611331 ANR1_24_B11.b1_A002 Anaerobic roots ... 42 0.26
gb|CX618881.1|CX618881 GABR1_42_E10.b1_A002 GA- or brassino... 42 0.26
gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete seq... 42 0.26
>gb|CN128853.1|CN128853 RHOH1_32_B04.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_32_B04_A002 3', mRNA sequence
Length = 861
Score = 995 bits (502), Expect = 0.0
Identities = 553/570 (97%)
Strand = Plus / Minus
Query: 354 gagttcagcttgtcatatgaaatcttggttcaggtcatctggtcgccgagaagtatcccc 413
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||
Sbjct: 570 gagttcagcttgtcatatgaaatcttggtcctggtcatctggtcgccgagaagtatctcc 511
Query: 414 atcaagcatcctcttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccac 473
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 atcaagcattctcttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccac 451
Query: 474 ctctgacattggtggcctgaattctggttcaggctggacacacagggcaaggacatcagc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctctgacattggtggcctgaattctggttcaggctggacacacagggcaaggacatcagc 391
Query: 534 aaatcgggatagagatttagctgggtatagacccttgagtgcaggatcgaccatcctgtc 593
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aaatcgggatagagatttggctgggtatagacccttgagtgcaggatcgaccatcctgtc 331
Query: 594 caatgcgtcgatgtcatgcagctggggtgttgcccaccgcacaagtgactgttctgacct 653
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 330 caatgcatcgatgtcatgcagctggggtgttgcccaccgcacaagtgactgctctgacct 271
Query: 654 gggtctagagctgtcaaatggtctacgtcctgtcaatagttcaagcatgacaactccaaa 713
||||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||||||
Sbjct: 270 gggtctagagctgtcaaatggccgacgtcctgtcaatagctcaagcatgacgactccaaa 211
Query: 714 gctgtaaacatcactcttgaaggtgtactgaccggtcatgtccacttctggggcagtgta 773
|||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 210 gctgtagacatcactcttgaggttgtactgaccggtcatgtccacttctggggcagtgta 151
Query: 774 tccggcactttgttctgctgcctggaattcagcaccaggaataaagcttgcaagtccagc 833
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 150 tccggcactttgttctgctgcctggaattcagcatcaggaataaagcttgcaagtccagc 91
Query: 834 atctgaaaggtgtggattgaattctgagtccagcaaaatatttgacgacttgaaattctt 893
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 90 atctgaaaggtgtggattgaattctgagtccagcaaaatgtttgatgacttgaaattctt 31
Query: 894 atggatgatggatggagaacatatttcatg 923
||||||||||||||||||||||||||||||
Sbjct: 30 atggatgatggatggagaacatatttcatg 1
Score = 159 bits (80), Expect = 2e-036
Identities = 111/120 (92%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 231 ctttgctaccaagaaaaacttgtgattatgtactggcgaagctgacagagttctgtttct 290
|||| |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 707 cttttctaccaagaaaaacctgtgattatttactggcgaagctgacaaagttctgtttct 648
Query: 291 tcctcttgtgtgattatgtctctgctgggccgctagtcgaacgaaataaatacaatctga 350
||| ||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 647 tccacttgtgtgattatctctctgctggg-tgctagtcaaacgaaataaatacaatctga 589
Score = 46.1 bits (23), Expect = 0.017
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 175 cattagcgtaagatcaaggtactattttgtagacacagtacaaccat 221
|||||| ||||||| |||||||||||| | |||||| |||||||||
Sbjct: 780 cattagtgtaagatgaaggtactatttcggtgacacaatacaaccat 734
>gb|BG556971.1|BG556971 EM1_40_H11.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence
Length = 550
Score = 819 bits (413), Expect = 0.0
Identities = 485/509 (95%)
Strand = Plus / Minus
Query: 1964 taagagaattaaaggagagatccagctctgacaaactataaaggttggaaaatacatcag 2023
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 548 taagagaattaaaggagagatccagttctgacaaactataaaggctggaaaatacatcac 489
Query: 2024 tgatgtttccttgtagttggttatgattaaggtttaaatacttaagattaggcatcgtcg 2083
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 488 tgatgtttccttgtagttggttatgattaaggtttaaatacttaagattaggcatcgttg 429
Query: 2084 aaattgagtagggtaaatttccaccaaattgatttcctgcaagattgagtttctcaagct 2143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aaatcgagtagggtaaatttccaccaaattgatttcctgcaagattgagtttctcaagct 369
Query: 2144 tcatattgggaagattgtactgtatttgacctccaccgccaaggttattttggctcatgt 2203
|||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||
Sbjct: 368 tcatattgggaagattgtacggtatttgagctccactgccaaggttattttggctcatgt 309
Query: 2204 caagctcaactaatgaacccaagttattcatgttgtaggccaaatttccagtgagtgaca 2263
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 308 caagctcaactaatgaacccaagttattcatgttgtaggccaaagttccggtgagtgaca 249
Query: 2264 agtttggtaattggattttagtgacccctgatcctgagcaagtaatgcccttccatgact 2323
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 agtttggtaatatgattttagtgacccctgatcctgagcaagtaatgcccttccatgact 189
Query: 2324 ggccacaaggatcacccccattcgcctgccaagctctgagctgcccaggagaattcagac 2383
||||||||||||| || ||||| ||||||||| || ||||||||||||||||||||||||
Sbjct: 188 ggccacaaggatcgccgccatttgcctgccaacctgtgagctgcccaggagaattcagac 129
Query: 2384 tggtgaagagcgtattgaggacattaagatcgttggggtcagtgtccgcagcagtgaaga 2443
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 128 tggtgaagagcgtgttgaggacattaagatcgttggggtcagtgtccgcagcagcgaaga 69
Query: 2444 tccgtccaccaggccaaatgcagcagcag 2472
|||| || || ||| |||||| |||||||
Sbjct: 68 tccgcccgcctggcgaaatgctgcagcag 40
>gb|CF072120.1|CF072120 FE1_20_E07.g2_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_20_E07_A002 5', mRNA sequence
Length = 521
Score = 819 bits (413), Expect = 0.0
Identities = 494/521 (94%)
Strand = Plus / Minus
Query: 1792 tttatcttcttaagctgactgggaatccaaccagtgaaatggttgtttccaacattcagg 1851
|||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||
Sbjct: 521 tttatcttcttaagctgactaggaattcaaccagtaaaatggttgttcgcaacattcaga 462
Query: 1852 gtttcaaggggaaggttggctaagacattgatataaccagtaaattggttgttctgcaaa 1911
|||||||| || || || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 461 gtttcaagagggagattagctaagacattgatatacccagtaaattggttgttctgcaaa 402
Query: 1912 tacattcttttcaggcttgacaatccagtgaaactttgtggtagatcaccagtaagagaa 1971
|| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 401 tatatttttttcaggcttgacaatccagtgaaactttgtggtagatcaccactaagagaa 342
Query: 1972 ttaaaggagagatccagctctgacaaactataaaggttggaaaatacatcagtgatgttt 2031
||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 341 ttaaaggagagatccagttctgacaaactataaaggctggaaaatacatcactgatgttt 282
Query: 2032 ccttgtagttggttatgattaaggtttaaatacttaagattaggcatcgtcgaaattgag 2091
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 281 ccttgtagttggttatgattaaggtttaaatacttaagattaggcatcgttgaaatcgag 222
Query: 2092 tagggtaaatttccaccaaattgatttcctgcaagattgagtttctcaagcttcatattg 2151
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 221 tagggtaaatttccaccaaattgatttcctgcaagattgagttcctcaagcttcatattg 162
Query: 2152 ggaagattgtactgtatttgacctccaccgccaaggttattttggctcatgtcaagctca 2211
|||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 161 ggaagattgtacggtatttgagctccactgccaaggttattttggctcatgtcaagctca 102
Query: 2212 actaatgaacccaagttattcatgttgtaggccaaatttccagtgagtgacaagtttggt 2271
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 101 actaatgaacccaagttattcatgttgtaggccaaagttccggtgagtgacaagtttggt 42
Query: 2272 aattggattttagtgacccctgatcctgagcaagtaatgcc 2312
||| ||||||||||||||||||||||||||||||||||||
Sbjct: 41 aatatgattttagtgacccctgatcctgagcaagtaatgcc 1
>gb|CF072056.1|CF072056 FE1_20_E07.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_20_E07_A002 3', mRNA sequence
Length = 657
Score = 775 bits (391), Expect = 0.0
Identities = 438/454 (96%)
Strand = Plus / Minus
Query: 354 gagttcagcttgtcatatgaaatcttggttcaggtcatctggtcgccgagaagtatcccc 413
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||
Sbjct: 454 gagttcagcttgtcatatgaaatcttggtcctggtcatctggtcgccgagaagtatctcc 395
Query: 414 atcaagcatcctcttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccac 473
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atcaagcattctcttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccac 335
Query: 474 ctctgacattggtggcctgaattctggttcaggctggacacacagggcaaggacatcagc 533
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 334 ctctgacattggtggcctgaattctggttcaggctggacgcacagggcaaggacatcagc 275
Query: 534 aaatcgggatagagatttagctgggtatagacccttgagtgcaggatcgaccatcctgtc 593
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaatcgggatagagatttggctgggtatagacccttgagtgcaggatcgaccatcctgtc 215
Query: 594 caatgcgtcgatgtcatgcagctggggtgttgcccaccgcacaagtgactgttctgacct 653
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 214 caatgcatcgatgtcatgcagctggggtgttgcccaccgcacaagtgactgctctgacct 155
Query: 654 gggtctagagctgtcaaatggtctacgtcctgtcaatagttcaagcatgacaactccaaa 713
||||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||| ||
Sbjct: 154 gggtctagagctgtcaaatggccgacgtcctgtcaatagctcaagcatgacgactccnaa 95
Query: 714 gctgtaaacatcactcttgaaggtgtactgaccggtcatgtccacttctggggcagtgta 773
|||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 94 gctgtagacatcactcttgaggttgtactgaccggtcatgtccacttctggggcagtgta 35
Query: 774 tccggcactttgttctgctgcctggaattcagca 807
||||||||||||||||||||||||||||||||||
Sbjct: 34 tccggcactttgttctgctgcctggaattcagca 1
Score = 159 bits (80), Expect = 2e-036
Identities = 111/120 (92%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 231 ctttgctaccaagaaaaacttgtgattatgtactggcgaagctgacagagttctgtttct 290
|||| |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 591 cttttctaccaagaaaaacctgtgattatttactggcgaagctgacaaagttctgtttct 532
Query: 291 tcctcttgtgtgattatgtctctgctgggccgctagtcgaacgaaataaatacaatctga 350
||| ||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 531 tccacttgtgtgattatctctctgctggg-tgctagtcaaacgaaataaatacaatctga 473
>gb|CD423503.1|CD423503 SA1_23_B12.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_23_B12_A002 5', mRNA sequence
Length = 672
Score = 609 bits (307), Expect = e-172
Identities = 340/351 (96%)
Strand = Plus / Plus
Query: 354 gagttcagcttgtcatatgaaatcttggttcaggtcatctggtcgccgagaagtatcccc 413
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||
Sbjct: 318 gagttcagcttgtcatatgaaatcttggtcctggtcatctggtcgccgagaagtatctcc 377
Query: 414 atcaagcatcctcttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccac 473
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atcaagcattctcttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccac 437
Query: 474 ctctgacattggtggcctgaattctggttcaggctggacacacagggcaaggacatcagc 533
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 438 ctctgacattggtggcctgaattctggttcaggctggacacgcagggcaaggacatcagc 497
Query: 534 aaatcgggatagagatttagctgggtatagacccttgagtgcaggatcgaccatcctgtc 593
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aaatcgggatagagatttggctgggtatagacccttgagtgcaggatcgaccatcctgtc 557
Query: 594 caatgcgtcgatgtcatgcagctggggtgttgcccaccgcacaagtgactgttctgacct 653
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 558 caatgcatcgatgtcatgcagctggggtgttgcccaccgcacaagtgactgctctgacct 617
Query: 654 gggtctagagctgtcaaatggtctacgtcctgtcaatagttcaagcatgac 704
||||||||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct: 618 gggtctagagctgtcaaatggccgacgtcctgtcaatagctcaagcatgac 668
Score = 159 bits (80), Expect = 2e-036
Identities = 111/120 (92%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 231 ctttgctaccaagaaaaacttgtgattatgtactggcgaagctgacagagttctgtttct 290
|||| |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 181 cttttctaccaagaaaaacctgtgattatttactggcgaagctgacaaagttctgtttct 240
Query: 291 tcctcttgtgtgattatgtctctgctgggccgctagtcgaacgaaataaatacaatctga 350
||| ||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 241 tccacttgtgtgattatctctctgctggg-tgctagtcaaacgaaataaatacaatctga 299
Score = 46.1 bits (23), Expect = 0.017
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 175 cattagcgtaagatcaaggtactattttgtagacacagtacaaccat 221
|||||| ||||||| |||||||||||| | |||||| |||||||||
Sbjct: 108 cattagtgtaagatgaaggtactatttcggtgacacaatacaaccat 154
>gb|BG556738.1|BG556738 EM1_40_H11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 578
Score = 541 bits (273), Expect = e-151
Identities = 294/301 (97%)
Strand = Plus / Minus
Query: 354 gagttcagcttgtcatatgaaatcttggttcaggtcatctggtcgccgagaagtatcccc 413
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||
Sbjct: 304 gagttcagcttgtcatatgaaatcttggtcctggtcatctggtcgccgagaagtatctcc 245
Query: 414 atcaagcatcctcttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccac 473
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 atcaagcattctcttcgtcatgttggccctctgcacaagtcgaaccaatgcttgcaccac 185
Query: 474 ctctgacattggtggcctgaattctggttcaggctggacacacagggcaaggacatcagc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ctctgacattggtggcctgaattctggttcaggctggacacacagggcaaggacatcagc 125
Query: 534 aaatcgggatagagatttagctgggtatagacccttgagtgcaggatcgaccatcctgtc 593
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aaatcgggatagagatttggctgggtatagacccttgagtgcaggatcgaccatcctgtc 65
Query: 594 caatgcgtcgatgtcatgcagctggggtgttgcccaccgcacaagtgactgttctgacct 653
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 64 caatgcatcgatgtcatgcagctggggtgttgcccaccgcacaagtgactgctctgacct 5
Query: 654 g 654
|
Sbjct: 4 g 4
Score = 159 bits (80), Expect = 2e-036
Identities = 111/120 (92%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 231 ctttgctaccaagaaaaacttgtgattatgtactggcgaagctgacagagttctgtttct 290
|||| |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 441 cttttctaccaagaaaaacctgtgattatttactggcgaagctgacaaagttctgtttct 382
Query: 291 tcctcttgtgtgattatgtctctgctgggccgctagtcgaacgaaataaatacaatctga 350
||| ||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 381 tccacttgtgtgattatctctctgctggg-tgctagtcaaacgaaataaatacaatctga 323
Score = 46.1 bits (23), Expect = 0.017
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 175 cattagcgtaagatcaaggtactattttgtagacacagtacaaccat 221
|||||| ||||||| |||||||||||| | |||||| |||||||||
Sbjct: 514 cattagtgtaagatgaaggtactatttcggtgacacaatacaaccat 468
>gb|BG054142.1|BG054142 OV2_1_G05.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 299
Score = 494 bits (249), Expect = e-137
Identities = 282/293 (96%)
Strand = Plus / Minus
Query: 1403 tcttcgggggtggtttcagattaatcgaagcaggtgaagccaaagactctatgtctactg 1462
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 299 tcttcgggggtggtttcagattaattgaagcaggtgaagccaaagactctatgtctactg 240
Query: 1463 tggtggactcatagataggcttcatgtcgttaacttcatttgaagggaaggaagtgaacg 1522
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 239 cggtggactcatagataggcttcatgtctttaacttcatttgaagggaaggaagtgaacg 180
Query: 1523 gctgatgctgttcaaaatgttcttccataacagctttgcgttttcttcttttgatcacaa 1582
|||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 179 gctggtgctgttcaaagtgttcttccatagcagctttgcgttttcttcttttgatcagga 120
Query: 1583 aaaatgcaacaactgatccaacaaccagcaacgatataatgattcctgctacacctccac 1642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 aaaatgcaacaactgatccaacaaccagcaacgatataatgattcctgctacacctccac 60
Query: 1643 cacctatcccagatcttccaccagaacttgatgaaccatcatcattctgaccc 1695
||||||| ||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 59 cacctatgccagatcttccaccagaacttgatgaaccatcaccatgctgaccc 7
>gb|CW315084.1|CW315084 104_806_11472171_148_35829_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472171, DNA
sequence
Length = 483
Score = 426 bits (215), Expect = e-117
Identities = 268/285 (94%), Gaps = 3/285 (1%)
Strand = Plus / Plus
Query: 1492 ttaacttcatttgaagggaaggaagtgaacggctgatgctgttcaaaatgttcttccata 1551
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 199 ttaacttcatttgaagggaaggaagtgaacggctggtgctgttcaaagtgttcttccata 258
Query: 1552 acagctttgcgttttcttcttttgatcacaaaaaatgcaacaactgatccaacaaccagc 1611
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 259 gcagctttgcgttttcttcttttgatcaggaaaaatgcaacaactgatccaacaaccagc 318
Query: 1612 aacgatataatgattcctgctacacctccaccacctatcccagatcttccaccagaactt 1671
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 319 aacgatataatgattcctgctacacctccaccacctatgccagatcttccaccagaactt 378
Query: 1672 gatgaaccatcatcattctgacccgcgccattccaatggtttggaggaggaggc---gct 1728
|||||||||||| ||| |||||| || || |||||||||||||||||||| ||| |||
Sbjct: 379 gatgaaccatcaccatgctgacctgcaccgttccaatggtttggaggaggcggcggtgct 438
Query: 1729 gtatatggaggtggaggtggcgctggtcctgtgctccaagaattt 1773
|||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 439 gtatatggaggtggcggtggtgctggtcctgtgctccaagaattt 483
Score = 202 bits (102), Expect = 1e-049
Identities = 108/110 (98%)
Strand = Plus / Plus
Query: 1381 tcaaatgatttgttctgttctatcttcgggggtggtttcagattaatcgaagcaggtgaa 1440
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 tcaaatgatttgttctgttctatcttcgggggtggtttcagattaattgaagcaggtgaa 60
Query: 1441 gccaaagactctatgtctactgtggtggactcatagataggcttcatgtc 1490
|||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61 gccaaagactctatgtctactgcggtggactcatagataggcttcatgtc 110
>gb|CW116018.1|CW116018 104_491_11106879_148_34594_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11106879, DNA
sequence
Length = 475
Score = 295 bits (149), Expect = 1e-077
Identities = 158/161 (98%)
Strand = Plus / Minus
Query: 507 ctggacacacagggcaaggacatcagcaaatcgggatagagatttagctgggtatagacc 566
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 404 ctggacacacagggcaaggacatcagcaaatcgggatagagatttggctgggtatagacc 345
Query: 567 cttgagtgcaggatcgaccatcctgtccaatgcgtcgatgtcatgcagctggggtgttgc 626
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 344 cttgagtgcaggatcgaccatcctgtccaatgcatcgatgtcatgcagctggggtgttgc 285
Query: 627 ccaccgcacaagtgactgttctgacctgggtctagagctgt 667
|||||||||||||||||| ||||||||||||||||||||||
Sbjct: 284 ccaccgcacaagtgactgctctgacctgggtctagagctgt 244
Score = 210 bits (106), Expect = 5e-052
Identities = 127/134 (94%)
Strand = Plus / Minus
Query: 664 ctgtcaaatggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaaca 723
||||||||||| | ||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 154 ctgtcaaatggccgacgtcctgtcaatagctcaagcatgacgactccaaagctgtagaca 95
Query: 724 tcactcttgaaggtgtactgaccggtcatgtccacttctggggcagtgtatccggcactt 783
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 tcactcttgaggttgtactgaccggtcatgtccacttctggggcagtgtatccggcactt 35
Query: 784 tgttctgctgcctg 797
||||||||||||||
Sbjct: 34 tgttctgctgcctg 21
>gb|CW790436.1|CW790436 SP__Ba0069A03.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0069A03 5', DNA sequence
Length = 837
Score = 295 bits (149), Expect = 1e-077
Identities = 158/161 (98%)
Strand = Plus / Minus
Query: 507 ctggacacacagggcaaggacatcagcaaatcgggatagagatttagctgggtatagacc 566
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 695 ctggacacacagggcaaggacatcagcaaatcgggatagagatttggctgggtatagacc 636
Query: 567 cttgagtgcaggatcgaccatcctgtccaatgcgtcgatgtcatgcagctggggtgttgc 626
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 635 cttgagtgcaggatcgaccatcctgtccaatgcatcgatgtcatgcagctggggtgttgc 576
Query: 627 ccaccgcacaagtgactgttctgacctgggtctagagctgt 667
|||||||||||||||||| ||||||||||||||||||||||
Sbjct: 575 ccaccgcacaagtgactgctctgacctgggtctagagctgt 535
Score = 210 bits (106), Expect = 5e-052
Identities = 127/134 (94%)
Strand = Plus / Minus
Query: 664 ctgtcaaatggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaaca 723
||||||||||| | ||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 445 ctgtcaaatggccgacgtcctgtcaatagctcaagcatgacgactccaaagctgtagaca 386
Query: 724 tcactcttgaaggtgtactgaccggtcatgtccacttctggggcagtgtatccggcactt 783
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcactcttgaggttgtactgaccggtcatgtccacttctggggcagtgtatccggcactt 326
Query: 784 tgttctgctgcctg 797
||||||||||||||
Sbjct: 325 tgttctgctgcctg 312
Score = 109 bits (55), Expect = 1e-021
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 455 gaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctg 509
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 gaaccaatgcttgcaccacctctgacattggtggcctgaattctggttcaggctg 783
>gb|CW438746.1|CW438746 fsbb001f156i14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f156i14, DNA
sequence
Length = 805
Score = 248 bits (125), Expect = 2e-063
Identities = 134/137 (97%)
Strand = Plus / Minus
Query: 794 cctggaattcagcaccaggaataaagcttgcaagtccagcatctgaaaggtgtggattga 853
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 cctggaattcagcatcaggaataaagcttgcaagtccagcatctgaaaggtgtggattga 108
Query: 854 attctgagtccagcaaaatatttgacgacttgaaattcttatggatgatggatggagaac 913
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 107 attctgagtccagcaaaatgtttgatgacttgaaattcttatggatgatggatggagaac 48
Query: 914 atatttcatgaaggtac 930
|||||||||||||||||
Sbjct: 47 atatttcatgaaggtac 31
Score = 210 bits (106), Expect = 5e-052
Identities = 127/134 (94%)
Strand = Plus / Minus
Query: 664 ctgtcaaatggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaaca 723
||||||||||| | ||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 585 ctgtcaaatggccgacgtcctgtcaatagctcaagcatgacgactccaaagctgtagaca 526
Query: 724 tcactcttgaaggtgtactgaccggtcatgtccacttctggggcagtgtatccggcactt 783
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tcactcttgaggttgtactgaccggtcatgtccacttctggggcagtgtatccggcactt 466
Query: 784 tgttctgctgcctg 797
||||||||||||||
Sbjct: 465 tgttctgctgcctg 452
Score = 107 bits (54), Expect = 5e-021
Identities = 64/66 (96%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 603 gatgtcatgcagctggggtgtt-gcccaccgcacaagtgactgttctgacctgggtctag 661
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 740 gatgtcatgcagctggggtgtttgcccaccgcacaagtgactgctctgacctgggtctag 681
Query: 662 agctgt 667
||||||
Sbjct: 680 agctgt 675
>gb|CW464816.1|CW464816 fsbb001f215e08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f215e08, DNA
sequence
Length = 606
Score = 234 bits (118), Expect = 3e-059
Identities = 130/134 (97%)
Strand = Plus / Minus
Query: 534 aaatcgggatagagatttagctgggtatagacccttgagtgcaggatcgaccatcctgtc 593
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aaatcgggatagagatttggctgggtatagacccttgagtgcaggatcgaccatcctgtc 547
Query: 594 caatgcgtcgatgtcatgcagctggggtgttgcccaccgcacaagtgactgttctgacct 653
|||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 546 caatgcatcgatgtcatgcagctggggtgttgcccgccgcacaagtgactgctctgacct 487
Query: 654 gggtctagagctgt 667
||||||||||||||
Sbjct: 486 gggtctagagctgt 473
Score = 210 bits (106), Expect = 5e-052
Identities = 127/134 (94%)
Strand = Plus / Minus
Query: 664 ctgtcaaatggtctacgtcctgtcaatagttcaagcatgacaactccaaagctgtaaaca 723
||||||||||| | ||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 383 ctgtcaaatggccgacgtcctgtcaatagctcaagcatgacgactccaaagctgtagaca 324
Query: 724 tcactcttgaaggtgtactgaccggtcatgtccacttctggggcagtgtatccggcactt 783
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcactcttgaggttgtactgaccggtcatgtccacttctggggcagtgtatccggcactt 264
Query: 784 tgttctgctgcctg 797
||||||||||||||
Sbjct: 263 tgttctgctgcctg 250
>gb|CW233201.1|CW233201 104_686_11213250_148_37371_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213250, DNA
sequence
Length = 699
Score = 216 bits (109), Expect = 8e-054
Identities = 127/133 (95%)
Strand = Plus / Plus
Query: 2278 attttagtgacccctgatcctgagcaagtaatgcccttccatgactggccacaaggatca 2337
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 attttagtgacccctgatcctgagcaagtaatgcccttccatgactggccacaaggatcg 603
Query: 2338 cccccattcgcctgccaagctctgagctgcccaggagaattcagactggtgaagagcgta 2397
|| ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 604 ccgccatttgcctgccaacctgtgagctgcccaggagaattcagactggtgaagagcgtg 663
Query: 2398 ttgaggacattaa 2410
|||||||||||||
Sbjct: 664 ttgaggacattaa 676
Score = 127 bits (64), Expect = 6e-027
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 2059 aaatacttaagattaggcatcgtcgaaattgagtagggtaaatttccaccaaattgattt 2118
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 56 aaatacttaagattaggcatcgttgaaatcgagtagggtaaatttccaccaaattgattt 115
Query: 2119 cctgcaagattg 2130
||||||||||||
Sbjct: 116 cctgcaagattg 127
Score = 125 bits (63), Expect = 2e-026
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 2131 agtttctcaagcttcatattgggaagattgtactgtatttgacctccaccgccaaggtta 2190
||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct: 216 agtttctcaagcttcatattgggaagattgtacggtatttgagctccactgccaaggtta 275
Query: 2191 ttttggctcatgtca 2205
|||||||||||||||
Sbjct: 276 ttttggctcatgtca 290
Score = 121 bits (61), Expect = 3e-025
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 2206 agctcaactaatgaacccaagttattcatgttgtaggccaaatttccagtgagtgacaag 2265
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 376 agctcaactaatgaacccaagttattcatgttgtaggccaaagttccggtgagtgacaag 435
Query: 2266 tttggtaat 2274
|||||||||
Sbjct: 436 tttggtaat 444
>gb|CW323420.1|CW323420 104_817_11476622_116_35958_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476622, DNA
sequence
Length = 659
Score = 216 bits (109), Expect = 8e-054
Identities = 127/133 (95%)
Strand = Plus / Plus
Query: 2278 attttagtgacccctgatcctgagcaagtaatgcccttccatgactggccacaaggatca 2337
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 attttagtgacccctgatcctgagcaagtaatgcccttccatgactggccacaaggatcg 573
Query: 2338 cccccattcgcctgccaagctctgagctgcccaggagaattcagactggtgaagagcgta 2397
|| ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 574 ccgccatttgcctgccaacctgtgagctgcccaggagaattcagactggtgaagagcgtg 633
Query: 2398 ttgaggacattaa 2410
|||||||||||||
Sbjct: 634 ttgaggacattaa 646
Score = 127 bits (64), Expect = 6e-027
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 2059 aaatacttaagattaggcatcgtcgaaattgagtagggtaaatttccaccaaattgattt 2118
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 26 aaatacttaagattaggcatcgttgaaatcgagtagggtaaatttccaccaaattgattt 85
Query: 2119 cctgcaagattg 2130
||||||||||||
Sbjct: 86 cctgcaagattg 97
Score = 125 bits (63), Expect = 2e-026
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 2131 agtttctcaagcttcatattgggaagattgtactgtatttgacctccaccgccaaggtta 2190
||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct: 186 agtttctcaagcttcatattgggaagattgtacggtatttgagctccactgccaaggtta 245
Query: 2191 ttttggctcatgtca 2205
|||||||||||||||
Sbjct: 246 ttttggctcatgtca 260
Score = 121 bits (61), Expect = 3e-025
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 2206 agctcaactaatgaacccaagttattcatgttgtaggccaaatttccagtgagtgacaag 2265
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 346 agctcaactaatgaacccaagttattcatgttgtaggccaaagttccggtgagtgacaag 405
Query: 2266 tttggtaat 2274
|||||||||
Sbjct: 406 tttggtaat 414
>gb|CW199755.1|CW199755 104_625_11183680_148_36859_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183680, DNA
sequence
Length = 648
Score = 159 bits (80), Expect = 2e-036
Identities = 111/120 (92%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 231 ctttgctaccaagaaaaacttgtgattatgtactggcgaagctgacagagttctgtttct 290
|||| |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 165 cttttctaccaagaaaaacctgtgattatttactggcgaagctgacaaagttctgtttct 106
Query: 291 tcctcttgtgtgattatgtctctgctgggccgctagtcgaacgaaataaatacaatctga 350
||| ||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 105 tccacttgtgtgattatctctctgctggg-tgctagtcaaacgaaataaatacaatctga 47
Score = 56.0 bits (28), Expect = 2e-005
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 354 gagttcagcttgtcatatgaaatcttgg 381
||||||||||||||||||||||||||||
Sbjct: 28 gagttcagcttgtcatatgaaatcttgg 1
Score = 46.1 bits (23), Expect = 0.017
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 175 cattagcgtaagatcaaggtactattttgtagacacagtacaaccat 221
|||||| ||||||| |||||||||||| | |||||| |||||||||
Sbjct: 238 cattagtgtaagatgaaggtactatttcggtgacacaatacaaccat 192
>gb|CW197825.1|CW197825 104_622_11181885_148_36830_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181885, DNA
sequence
Length = 698
Score = 141 bits (71), Expect = 4e-031
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 2316 ccatgactggccacaaggatcacccccattcgcctgccaagctctgagctgcccaggaga 2375
||||||||||||||||||||| || ||||| ||||||||| || ||||||||||||||||
Sbjct: 1 ccatgactggccacaaggatcgccgccatttgcctgccaacctgtgagctgcccaggaga 60
Query: 2376 attcagactggtgaagagcgtattgaggacattaa 2410
||||||||||||||||||||| |||||||||||||
Sbjct: 61 attcagactggtgaagagcgtgttgaggacattaa 95
>gb|CW120709.1|CW120709 104_498_11109484_148_34656_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109484, DNA
sequence
Length = 559
Score = 139 bits (70), Expect = 1e-030
Identities = 187/225 (83%), Gaps = 2/225 (0%)
Strand = Plus / Plus
Query: 980 taagtggcttgctgtactcatctgaaaggtggagtagatcatgaagcgatccattcctgt 1039
|||||||| |||||||||| |||||| | ||| |||||||||||| || || |||||
Sbjct: 95 taagtggcatgctgtactc--ctgaaacgctgaggagatcatgaagcaataaatccctgt 152
Query: 1040 ggaaatcatacacaagcaagtgctggccatgttccatgcaatagcctacaagctcattca 1099
|||||||||||||||||||||| | ||||||||||| |||| || |||||||| ||||
Sbjct: 153 ggaaatcatacacaagcaagtgaagtccatgttccatacaatttcccacaagctcgttca 212
Query: 1100 gattcggatggtgcaattttgaaatgttcgagaccagttcagcaaagtcatcagatgatt 1159
||| ||||||||||| |||| |||| || | | ||||||||||||||||||||| ||||
Sbjct: 213 gatccggatggtgcagtttttaaataatcaacatcagttcagcaaagtcatcagaagatt 272
Query: 1160 gaaatggcatcacagtactatctaatttcttgatcgccagaacct 1204
| ||||| || | |||| | |||||||| |||| || |||||||
Sbjct: 273 ggaatggtatgaaagtattgcctaatttcatgatggctagaacct 317
>gb|CW101113.1|CW101113 104_468_11004465_116_34398_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004465, DNA
sequence
Length = 569
Score = 135 bits (68), Expect = 2e-029
Identities = 152/180 (84%)
Strand = Plus / Minus
Query: 1201 acctttccatcattgaattgtgccctgtaaacacgtccaaaagtaccctctccaacaagg 1260
||||||| |||| || ||||||||||||| |||| ||| |||| ||||||||||| ||||
Sbjct: 263 acctttctatcactggattgtgccctgtacacacatccgaaaggaccctctccaataagg 204
Query: 1261 ttgtcgaagctaaagctatctgttgccatctgtagatctgcaactgaataaacagttgcc 1320
||||| | | | ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 203 ttgtccatgttgaagctatctgttgccatctgtaggtcagcaactgaataaacagttgcc 144
Query: 1321 ttcataggtgttatattacttctatttgcagcagtcttgtttgaaaaatcatcatcatca 1380
|| | ||| | ||||||| | || || ||| |||||||| ||||||||||||||||
Sbjct: 143 ttaactagtgctgcattacttttcttgtcaacaggcttgtttgcaaaatcatcatcatca 84
>gb|CW315083.1|CW315083 104_806_11472171_116_35825_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11472171, DNA
sequence
Length = 573
Score = 127 bits (64), Expect = 6e-027
Identities = 70/72 (97%)
Strand = Plus / Minus
Query: 2059 aaatacttaagattaggcatcgtcgaaattgagtagggtaaatttccaccaaattgattt 2118
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 202 aaatacttaagattaggcatcgttgaaatcgagtagggtaaatttccaccaaattgattt 143
Query: 2119 cctgcaagattg 2130
||||||||||||
Sbjct: 142 cctgcaagattg 131
Score = 119 bits (60), Expect = 1e-024
Identities = 72/76 (94%)
Strand = Plus / Minus
Query: 1911 atacattcttttcaggcttgacaatccagtgaaactttgtggtagatcaccagtaagaga 1970
||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 552 atacatttttttcaggcttgtcaatccagtgaaactttgtggtagatcaccgctaagaga 493
Query: 1971 attaaaggagagatcc 1986
||||||||||||||||
Sbjct: 492 attaaaggagagatcc 477
Score = 113 bits (57), Expect = 9e-023
Identities = 66/69 (95%)
Strand = Plus / Minus
Query: 1990 tctgacaaactataaaggttggaaaatacatcagtgatgtttccttgtagttggttatga 2049
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 359 tctgacaaactataaaggctggaaaatacatcactgatgtttccttgtagtaggttatga 300
Query: 2050 ttaaggttt 2058
|||||||||
Sbjct: 299 ttaaggttt 291
Score = 75.8 bits (38), Expect = 2e-011
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 2131 agtttctcaagcttcatattgggaagattgtactgtatttga 2172
||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 42 agtttctcaagcttcatattgggaagattgtacggtatttga 1
>gb|CW438745.1|CW438745 fsbb001f156i14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f156i14, DNA
sequence
Length = 707
Score = 113 bits (57), Expect = 9e-023
Identities = 82/89 (92%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 231 ctttgctaccaagaaaaacttgtgattatgtactggcgaagctgacagagttctgtttct 290
|||| |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 619 cttttctaccaagaaaaacctgtgattatttactggcgaagctgacaaagttctgtttct 678
Query: 291 t-cctcttgtgtgattatgtctctgctgg 318
| || ||||||||||||| ||||||||||
Sbjct: 679 tcccacttgtgtgattatctctctgctgg 707
Score = 46.1 bits (23), Expect = 0.017
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 175 cattagcgtaagatcaaggtactattttgtagacacagtacaaccat 221
|||||| ||||||| |||||||||||| | |||||| |||||||||
Sbjct: 546 cattagtgtaagatgaaggtactatttcggtgacacaatacaaccat 592
>gb|CW486490.1|CW486490 fsbb001f249m10f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f249m10, DNA
sequence
Length = 763
Score = 107 bits (54), Expect = 5e-021
Identities = 135/161 (83%), Gaps = 12/161 (7%)
Strand = Plus / Plus
Query: 2411 gatcgttggggtcagtgtccgcagcagtgaagatccgtccaccaggccaaatgc---agc 2467
||||||||||||||||||||||||||| ||||||||| || || ||| |||||| |||
Sbjct: 41 gatcgttggggtcagtgtccgcagcagcgaagatccgcccgcctggcgaaatgctgcagc 100
Query: 2468 agcaggccaga------agcagcagccgccgcgccacaccccccaccccgccaccgcctc 2521
|||||||||| |||| |||||||||||||||| || |||||||||||||||||
Sbjct: 101 agcaggccagggacagcagcatcagccgccgcgccacatccagcaccccgccaccgcctc 160
Query: 2522 cgctcttccttatc---gccatcccgcacagcaatgctccc 2559
||||| |||| || | ||||||||||||||||||||||
Sbjct: 161 cgctcctcctcctcctcggcatcccgcacagcaatgctccc 201
Score = 44.1 bits (22), Expect = 0.066
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2585 aagtgctttctgggccgggaggagtt 2610
||||||||| ||||||||||||||||
Sbjct: 247 aagtgctttttgggccgggaggagtt 272
>gb|CW499171.1|CW499171 fsbb001f293m17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f293m17, DNA
sequence
Length = 719
Score = 107 bits (54), Expect = 5e-021
Identities = 135/161 (83%), Gaps = 12/161 (7%)
Strand = Plus / Minus
Query: 2411 gatcgttggggtcagtgtccgcagcagtgaagatccgtccaccaggccaaa---tgcagc 2467
||||||||||||||||||||||||||| ||||||||| || || ||| ||| ||||||
Sbjct: 282 gatcgttggggtcagtgtccgcagcagcgaagatccgcccgcctggcgaaatgctgcagc 223
Query: 2468 agcaggc------cagaagcagcagccgccgcgccacaccccccaccccgccaccgcctc 2521
||||||| ||| |||| |||||||||||||||| || |||||||||||||||||
Sbjct: 222 agcaggccagggacagcagcatcagccgccgcgccacatccagcaccccgccaccgcctc 163
Query: 2522 cg---ctcttccttatcgccatcccgcacagcaatgctccc 2559
|| ||| |||| ||| ||||||||||||||||||||||
Sbjct: 162 cgctcctcctcctcctcggcatcccgcacagcaatgctccc 122
Score = 44.1 bits (22), Expect = 0.066
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 2585 aagtgctttctgggccgggaggagtt 2610
||||||||| ||||||||||||||||
Sbjct: 76 aagtgctttttgggccgggaggagtt 51
>gb|CW197824.1|CW197824 104_622_11181885_116_36829_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181885, DNA
sequence
Length = 701
Score = 101 bits (51), Expect = 3e-019
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 2348 cctgccaagctctgagctgcccaggagaattcagactggtgaagagcgtattgaggacat 2407
|||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 689 cctgccaacctgtgagctgcccaggagaattcagactggtgaagagcgtgttgaggacat 630
Query: 2408 taa 2410
|||
Sbjct: 629 taa 627
>gb|CW213536.1|CW213536 104_645_11191604_116_37037_078 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191604, DNA
sequence
Length = 449
Score = 95.6 bits (48), Expect = 2e-017
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 1911 atacattcttttcaggcttgacaatccagtgaaactttgtggtagatcaccagtaagaga 1970
||||||| |||||||||||||||||||| |||| |||||||||||||| ||| ||| |||
Sbjct: 211 atacattattttcaggcttgacaatccattgaagctttgtggtagatccccactaacaga 270
Query: 1971 attaaaggagagatcc 1986
|||||||| |||||||
Sbjct: 271 attaaaggcgagatcc 286
Score = 69.9 bits (35), Expect = 1e-009
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 1985 ccagctctgacaaactataaaggttggaaaatacatcagtgatgtttcctt 2035
||||||||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct: 399 ccagctctgacaaactagcaaggctggaaaatacatcactgatgtttcctt 449
Score = 69.9 bits (35), Expect = 1e-009
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 1847 tcagggtttcaaggggaaggttggctaagacattgatataaccagtaaattggttgttct 1906
|||| |||||||| || || || |||||||||||||| ||||||||| ||||||||||||
Sbjct: 59 tcagagtttcaagagggagattagctaagacattgatttaaccagtacattggttgttct 118
Query: 1907 gca 1909
|||
Sbjct: 119 gca 121
>gb|BG050509.1|BG050509 FM1_70_C08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 496
Score = 77.8 bits (39), Expect = 5e-012
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 469 accacctctgacattggtggcctgaattctggttcaggctggacaca 515
|||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 239 accacctccgacattggtggcctgaattctggctcaggctggacaca 193
>gb|CW323421.1|CW323421 104_817_11476622_148_35959_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476622, DNA
sequence
Length = 698
Score = 73.8 bits (37), Expect = 7e-011
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 2360 tgagctgcccaggagaattcagactggtgaagagcgt 2396
|||||||||||||||||||||||||||||||||||||
Sbjct: 691 tgagctgcccaggagaattcagactggtgaagagcgt 655
>gb|AW922655.1|AW922655 DG1_20_A04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 651
Score = 73.8 bits (37), Expect = 7e-011
Identities = 139/173 (80%)
Strand = Plus / Minus
Query: 574 gcaggatcgaccatcctgtccaatgcgtcgatgtcatgcagctggggtgttgcccaccgc 633
||||| ||||||||| ||||| |||||||||||||||||||||||| || ||||| | |
Sbjct: 235 gcagggtcgaccatctggtccagtgcgtcgatgtcatgcagctggggagtagcccatctc 176
Query: 634 acaagtgactgttctgacctgggtctagagctgtcaaatggtctacgtcctgtcaatagt 693
|| |||||||| || | || |||| || |||||||| ||| | || || |||| ||
Sbjct: 175 accagtgactgctcaggccgcggtcgggacctgtcaaacggtttccggccagtcagaagc 116
Query: 694 tcaagcatgacaactccaaagctgtaaacatcactcttgaaggtgtactgacc 746
|| |||||||| ||||| |||||||| || || ||||| | || |||||||||
Sbjct: 115 tctagcatgacgactccgaagctgtacacgtcgctcttcagggagtactgacc 63
>gb|CD222601.1|CD222601 CCC1_23_C02.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_23_C02_A007 3', mRNA sequence
Length = 633
Score = 73.8 bits (37), Expect = 7e-011
Identities = 139/173 (80%)
Strand = Plus / Minus
Query: 574 gcaggatcgaccatcctgtccaatgcgtcgatgtcatgcagctggggtgttgcccaccgc 633
||||| ||||||||| ||||| |||||||||||||||||||||||| || ||||| | |
Sbjct: 322 gcagggtcgaccatctggtccagtgcgtcgatgtcatgcagctggggagtagcccatctc 263
Query: 634 acaagtgactgttctgacctgggtctagagctgtcaaatggtctacgtcctgtcaatagt 693
|| |||||||| || | || |||| || |||||||| ||| | || || |||| ||
Sbjct: 262 accagtgactgctcaggccgcggtcgggacctgtcaaacggtttccggccagtcagaagc 203
Query: 694 tcaagcatgacaactccaaagctgtaaacatcactcttgaaggtgtactgacc 746
|| |||||||| ||||| |||||||| || || ||||| | || |||||||||
Sbjct: 202 tctagcatgacgactccgaagctgtacacgtcgctcttcagggagtactgacc 150
>gb|CD426524.1|CD426524 SA1_21_D08.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_21_D08_A002 3', mRNA sequence
Length = 665
Score = 73.8 bits (37), Expect = 7e-011
Identities = 139/173 (80%)
Strand = Plus / Minus
Query: 574 gcaggatcgaccatcctgtccaatgcgtcgatgtcatgcagctggggtgttgcccaccgc 633
||||| ||||||||| ||||| |||||||||||||||||||||||| || ||||| | |
Sbjct: 240 gcagggtcgaccatctggtccagtgcgtcgatgtcatgcagctggggagtagcccatctc 181
Query: 634 acaagtgactgttctgacctgggtctagagctgtcaaatggtctacgtcctgtcaatagt 693
|| |||||||| || | || |||| || |||||||| ||| | || || |||| ||
Sbjct: 180 accagtgactgctcaggccgcggtcgggacctgtcaaacggtttccggccagtcagaagc 121
Query: 694 tcaagcatgacaactccaaagctgtaaacatcactcttgaaggtgtactgacc 746
|| |||||||| ||||| |||||||| || || ||||| | || |||||||||
Sbjct: 120 tctagcatgacgactccgaagctgtacacgtcgctcttcagggagtactgacc 68
>gb|CD461963.1|CD461963 SA1_36_D07.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_36_D07_A002 3', mRNA sequence
Length = 546
Score = 73.8 bits (37), Expect = 7e-011
Identities = 139/173 (80%)
Strand = Plus / Minus
Query: 574 gcaggatcgaccatcctgtccaatgcgtcgatgtcatgcagctggggtgttgcccaccgc 633
||||| ||||||||| ||||| |||||||||||||||||||||||| || ||||| | |
Sbjct: 173 gcagggtcgaccatctggtccagtgcgtcgatgtcatgcagctggggagtagcccatctc 114
Query: 634 acaagtgactgttctgacctgggtctagagctgtcaaatggtctacgtcctgtcaatagt 693
|| |||||||| || | || |||| || |||||||| ||| | || || |||| ||
Sbjct: 113 accagtgactgctcaggccgcggtcgggacctgtcaaacggtttccggccagtcagaagc 54
Query: 694 tcaagcatgacaactccaaagctgtaaacatcactcttgaaggtgtactgacc 746
|| |||||||| ||||| |||||||| || || ||||| | || |||||||||
Sbjct: 53 tctagcatgacgactccgaagctgtacacgtcgctcttcagggagtactgacc 1
>gb|CN135793.1|CN135793 OX1_39_B01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_39_B01_A002 3', mRNA sequence
Length = 739
Score = 73.8 bits (37), Expect = 7e-011
Identities = 139/173 (80%)
Strand = Plus / Minus
Query: 574 gcaggatcgaccatcctgtccaatgcgtcgatgtcatgcagctggggtgttgcccaccgc 633
||||| ||||||||| ||||| |||||||||||||||||||||||| || ||||| | |
Sbjct: 406 gcagggtcgaccatctggtccagtgcgtcgatgtcatgcagctggggagtagcccatctc 347
Query: 634 acaagtgactgttctgacctgggtctagagctgtcaaatggtctacgtcctgtcaatagt 693
|| |||||||| || | || |||| || |||||||| ||| | || || |||| ||
Sbjct: 346 accagtgactgctcaggccgcggtcgggacctgtcaaacggtttccggccagtcagaagc 287
Query: 694 tcaagcatgacaactccaaagctgtaaacatcactcttgaaggtgtactgacc 746
|| |||||||| ||||| |||||||| || || ||||| | || |||||||||
Sbjct: 286 tctagcatgacgactccgaagctgtacacgtcgctcttcagggagtactgacc 234
>gb|CC059607.1|CC059607 ii25d06.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii25d06, DNA sequence
Length = 488
Score = 71.9 bits (36), Expect = 3e-010
Identities = 125/154 (81%), Gaps = 12/154 (7%)
Strand = Plus / Minus
Query: 2418 ggggtcagtgtccgcagcagtgaagatccgtccaccaggccaaatgc---agcagcaggc 2474
|||||||||||||||||||| ||||||||| || || | |||||| ||||||||||
Sbjct: 430 ggggtcagtgtccgcagcagcgaagatccgcccgcctgcngaaatgctgcagcagcaggc 371
Query: 2475 caga------agcagcagccgccgcgccacaccccccaccccgccaccgcctccgctctt 2528
||| |||| |||||||||||||||| || |||||||||||||||||||||| |
Sbjct: 370 cagggacagcagcatcagccgccgcgccacatccagcaccccgccaccgcctccgctcct 311
Query: 2529 ccttatc---gccatcccgcacagcaatgctccc 2559
||| || | |||||||||||||| |||||||
Sbjct: 310 cctcctcctcggcatcccgcacagcattgctccc 277
Score = 44.1 bits (22), Expect = 0.066
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 2585 aagtgctttctgggccgggaggagtt 2610
||||||||| ||||||||||||||||
Sbjct: 231 aagtgctttttgggccgggaggagtt 206
>gb|CW465655.1|CW465655 fsbb001f216i08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f216i08, DNA
sequence
Length = 372
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 574 gcaggatcgaccatcctgtccaatgcgtcgatgtcatgcagctggggtgttgcccaccgc 633
||||| ||||||||| ||||| |||||||||||||||||||||||| || ||||| | |
Sbjct: 104 gcagggtcgaccatctggtccagtgcgtcgatgtcatgcagctggggagtagcccatctc 45
Query: 634 acaagtgactg 644
|| ||||||||
Sbjct: 44 accagtgactg 34
Score = 44.1 bits (22), Expect = 0.066
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 428 tcgtcatgttggccctctgcac 449
||||||||||||||||||||||
Sbjct: 349 tcgtcatgttggccctctgcac 328
>gb|BZ781222.1|BZ781222 ii25d06.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii25d06, DNA sequence
Length = 737
Score = 67.9 bits (34), Expect = 5e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 2411 gatcgttggggtcagtgtccgcagcagtgaagatccgtccaccaggccaaatgcagcagc 2470
||||||||||||||||||||||||||| ||||||||| || | ||| |||||| |||||
Sbjct: 648 gatcgttggggtcagtgtccgcagcagcgaagatccgccccgctggcgaaatgctgcagc 707
Query: 2471 ag 2472
||
Sbjct: 708 ag 709
>gb|CW101114.1|CW101114 104_468_11004465_148_34394_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004465, DNA
sequence
Length = 505
Score = 67.9 bits (34), Expect = 5e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 861 gtccagcaaaatatttgacgacttgaaattcttatggatgatggatggagaacatatttc 920
|||||| |||||||| |||||||| || ||||| || || || ||||||||||| |||||
Sbjct: 302 gtccagtaaaatattggacgacttaaagttcttgtgaattatagatggagaacaaatttc 361
Query: 921 atgaaggtac 930
||||||||||
Sbjct: 362 atgaaggtac 371
>gb|CW044217.1|CW044217 104_280_10508825_114_30262 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10508825, DNA
sequence
Length = 644
Score = 65.9 bits (33), Expect = 2e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 691 agttcaagcatgacaactccaaagctgtaaacatcactctt 731
|||||||| | ||||||||||||||||||||||||||||||
Sbjct: 134 agttcaaggaggacaactccaaagctgtaaacatcactctt 94
>gb|CW109708.1|CW109708 104_482_11103275_116_34509_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11103275, DNA
sequence
Length = 646
Score = 65.9 bits (33), Expect = 2e-008
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 691 agttcaagcatgacaactccaaagctgtaaacatcactctt 731
|||||||| | ||||||||||||||||||||||||||||||
Sbjct: 545 agttcaaggaggacaactccaaagctgtaaacatcactctt 585
>gb|CW162697.1|CW162697 104_570_11151074_116_36448_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151074, DNA
sequence
Length = 674
Score = 65.9 bits (33), Expect = 2e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 691 agttcaagcatgacaactccaaagctgtaaacatcactctt 731
|||||||| | ||||||||||||||||||||||||||||||
Sbjct: 199 agttcaaggaggacaactccaaagctgtaaacatcactctt 159
>gb|CW464177.1|CW464177 fsbb001f213e18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f213e18, DNA
sequence
Length = 659
Score = 65.9 bits (33), Expect = 2e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 691 agttcaagcatgacaactccaaagctgtaaacatcactctt 731
|||||||| | ||||||||||||||||||||||||||||||
Sbjct: 263 agttcaaggaggacaactccaaagctgtaaacatcactctt 223
>gb|BI099366.1|BI099366 IP1_41_B11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 548
Score = 63.9 bits (32), Expect = 7e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 472 acctctgacattggtggcctgaattctggttcaggctggacaca 515
||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 236 acctccgacatcggtggcctgaattctggctcaggctggacaca 193
>gb|BI099594.1|BI099594 IP1_44_C02.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 439
Score = 63.9 bits (32), Expect = 7e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 472 acctctgacattggtggcctgaattctggttcaggctggacaca 515
||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 127 acctccgacatcggtggcctgaattctggctcaggctggacaca 84
>gb|BM331266.1|BM331266 PIC1_71_H01.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 514
Score = 63.9 bits (32), Expect = 7e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 472 acctctgacattggtggcctgaattctggttcaggctggacaca 515
||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 144 acctccgacatcggtggcctgaattctggctcaggctggacaca 101
>gb|CF430980.1|CF430980 NIT1_4_B03.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_4_B03_A002 3', mRNA sequence
Length = 514
Score = 63.9 bits (32), Expect = 7e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 472 acctctgacattggtggcctgaattctggttcaggctggacaca 515
||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 123 acctccgacatcggtggcctgaattctggctcaggctggacaca 80
>gb|BG159162.1|BG159162 RHIZ2_28_H09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 523
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 574 gcaggatcgaccatcctgtccaatgcgtcgatgtcatgcagctggggtgttgcccaccgc 633
||||| ||||||||| ||||| ||||||||||||||||||||| || || ||||| | |
Sbjct: 371 gcagggtcgaccatctggtccagtgcgtcgatgtcatgcagctgcggagtagcccatctc 312
Query: 634 acaagtgactg 644
|| ||||||||
Sbjct: 311 accagtgactg 301
>gb|BG159163.1|BG159163 RHIZ2_28_H10.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 507
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 574 gcaggatcgaccatcctgtccaatgcgtcgatgtcatgcagctggggtgttgcccaccgc 633
||||| ||||||||| ||||| ||||||||||||||||||||| || || ||||| | |
Sbjct: 371 gcagggtcgaccatctggtccagtgcgtcgatgtcatgcagctgcggagtagcccatctc 312
Query: 634 acaagtgactg 644
|| ||||||||
Sbjct: 311 accagtgactg 301
>gb|BG159164.1|BG159164 RHIZ2_28_H11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 259
Score = 61.9 bits (31), Expect = 3e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 574 gcaggatcgaccatcctgtccaatgcgtcgatgtcatgcagctggggtgttgcccaccgc 633
||||| ||||||||| ||||| ||||||||||||||||||||| || || ||||| | |
Sbjct: 191 gcagggtcgaccatctggtccagtgcgtcgatgtcatgcagctgcggagtagcccatctc 132
Query: 634 acaagtgactg 644
|| ||||||||
Sbjct: 131 accagtgactg 121
>gb|BG557768.1|BG557768 EM1_56_G11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 636
Score = 61.9 bits (31), Expect = 3e-007
Identities = 202/259 (77%)
Strand = Plus / Minus
Query: 472 acctctgacattggtggcctgaattctggttcaggctggacacacagggcaaggacatca 531
||||||||||||||||| | ||| |||||||||||||| ||||| || |||| | ||
Sbjct: 266 acctctgacattggtggacggaactctggttcaggctgaacacagagtgcaattatgtct 207
Query: 532 gcaaatcgggatagagatttagctgggtatagacccttgagtgcaggatcgaccatcctg 591
||||| || || || |||||||||||||| | || || | ||| ||||| ||||||||
Sbjct: 206 gcaaaacgagagagtgatttagctgggtacattccatttaatgctggatcaaccatccta 147
Query: 592 tccaatgcgtcgatgtcatgcagctggggtgttgcccaccgcacaagtgactgttctgac 651
| | ||| || || ||||| ||||| || || ||||| | ||||| |||||||| |||
Sbjct: 146 gcaagtgcatcaatatcatgaagctgaggggtagcccatctaacaagagactgttcggac 87
Query: 652 ctgggtctagagctgtcaaatggtctacgtcctgtcaatagttcaagcatgacaactcca 711
|| ||| || ||||| | ||| | || ||||||||||| || | ||| || ||||||
Sbjct: 86 ctctctctggaactgtctagtggcttccgccctgtcaatagctctaacattaccactcca 27
Query: 712 aagctgtaaacatcactct 730
|| ||||| ||||||||||
Sbjct: 26 aaactgtacacatcactct 8
>gb|CW171813.1|CW171813 104_582_11155940_148_36527_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11155940, DNA
sequence
Length = 687
Score = 60.0 bits (30), Expect = 1e-006
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 703 acaactccaaagctgtaaacatcactcttg 732
||||||||||||||||||||||||||||||
Sbjct: 404 acaactccaaagctgtaaacatcactcttg 433
>gb|CW228873.1|CW228873 104_670_11207006_116_37258_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11207006, DNA
sequence
Length = 691
Score = 60.0 bits (30), Expect = 1e-006
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 703 acaactccaaagctgtaaacatcactcttg 732
||||||||||||||||||||||||||||||
Sbjct: 168 acaactccaaagctgtaaacatcactcttg 197
>gb|CL184986.1|CL184986 104_398_10899222_114_32367_019 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10899222, DNA
sequence
Length = 731
Score = 56.0 bits (28), Expect = 2e-005
Identities = 51/58 (87%), Gaps = 3/58 (5%)
Strand = Plus / Plus
Query: 2505 caccccgccaccgcctccgctcttccttatc---gccatcccgcacagcaatgctccc 2559
|||||||||||||||||||||| |||| || | ||||||||||||||||||||||
Sbjct: 11 caccccgccaccgcctccgctcctcctcctcctcggcatcccgcacagcaatgctccc 68
Score = 44.1 bits (22), Expect = 0.066
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2585 aagtgctttctgggccgggaggagtt 2610
||||||||| ||||||||||||||||
Sbjct: 114 aagtgctttttgggccgggaggagtt 139
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 812,224
Number of Sequences: 832831
Number of extensions: 812224
Number of successful extensions: 235857
Number of sequences better than 0.5: 150
Number of HSP's better than 0.5 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 235459
Number of HSP's gapped (non-prelim): 380
length of query: 2639
length of database: 491,359,669
effective HSP length: 21
effective length of query: 2618
effective length of database: 473,870,218
effective search space: 1240592230724
effective search space used: 1240592230724
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)