BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921788.2.1
(606 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD226887.1|CD226887 CCC1_48_D11.g1_A007 Callus culture/c... 428 e-118
gb|CD428117.1|CD428117 ETH1_32_G01.g1_A002 Ethylene-treated... 391 e-107
gb|CD428012.1|CD428012 ETH1_32_G01.b1_A002 Ethylene-treated... 345 3e-093
gb|CW792281.1|CW792281 SP__Ba0090M09.r SP__Ba Sorghum propi... 137 1e-030
gb|CD226797.1|CD226797 CCC1_48_D11.b1_A007 Callus culture/c... 131 8e-029
gb|CW393428.1|CW393428 fsbb001f080h19k0 Sorghum methylation... 80 3e-013
gb|CD463375.1|CD463375 ETH1_44_H09.b1_A002 Ethylene-treated... 80 3e-013
gb|CD463457.1|CD463457 ETH1_44_H09.g1_A002 Ethylene-treated... 80 3e-013
gb|CW407903.1|CW407903 fsbb001f101j04f0 Sorghum methylation... 42 0.058
gb|CL183852.1|CL183852 104_396_10898448_116_31924_288 Sorgh... 40 0.23
gb|CW160393.1|CW160393 104_566_11149858_148_36426_033 Sorgh... 40 0.23
gb|CW432137.1|CW432137 fsbb001f146k24k0 Sorghum methylation... 40 0.23
>gb|CD226887.1|CD226887 CCC1_48_D11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_48_D11_A007 5', mRNA sequence
Length = 670
Score = 428 bits (216), Expect = e-118
Identities = 301/329 (91%), Gaps = 9/329 (2%)
Strand = Plus / Plus
Query: 1 tacgaccgcgcgcaccgcccctacgcggctcccgccc------ccgccggtgagtacgac 54
|||||||||||| |||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 80 tacgaccgcgcgtaccgcccctacgcggcccccgccctcgcccccgccggtgagtacgac 139
Query: 55 cgcccctaccgcaacgaggtcgtgccctacggtgaccgccgcatcgacatcatcgtcaag 114
|||||||||||||||||||||||||| ||||| ||||| ||| |||||||| ||||||||
Sbjct: 140 cgcccctaccgcaacgaggtcgtgccgtacggcgaccggcgcctcgacatcgtcgtcaag 199
Query: 115 ccgcccgcgaggtcgcccccgccggtatccaccaggggcggcggg---ggaggggtgggg 171
|||||||| |||||||| |||||||||||||||||| ||||||| ||||||| ||||
Sbjct: 200 ccgcccgccaggtcgccgccgccggtatccaccaggagcggcggcagcggaggggcgggg 259
Query: 172 tcggcgtggtgcttcagcgatccggagatgaaaaggcggcggcgggtggccagctacaag 231
|||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct: 260 tcggcgtggtgcttcagcgacccggagatgaagaggcggcggcgggtggcgagctacaag 319
Query: 232 gcttactcggcggagggcaaagtcaaggcatcgttccccaggggattccgctggatcaag 291
|| ||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 320 gcctactcggtggagggcaaagtcaaggcatcgttccgcagggggttccgctggatcaag 379
Query: 292 gccaagtgctccgagctcatccatggctg 320
|||||||||||||||||||||||||||||
Sbjct: 380 gccaagtgctccgagctcatccatggctg 408
>gb|CD428117.1|CD428117 ETH1_32_G01.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_32_G01_A002 5', mRNA sequence
Length = 454
Score = 391 bits (197), Expect = e-107
Identities = 311/350 (88%), Gaps = 18/350 (5%)
Strand = Plus / Plus
Query: 1 tacgaccgcgcgcaccgcccctacgcggctcccgccc------ccgccggtgagtacgac 54
|||||||||||| ||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 105 tacgaccgcgcgtaccgcccctacgcgggccccgccctcgcccccgccggtgagtacgac 164
Query: 55 cgcccctaccgcaacgaggtcgtgccctacggtgaccgccgcatcgacatcatcgtcaag 114
|||||||||||||||||||||||||| ||||| ||||| ||| |||||||| ||||||||
Sbjct: 165 cgcccctaccgcaacgaggtcgtgccgtacggcgaccggcgcctcgacatcgtcgtcaag 224
Query: 115 ccgcccgcgaggtcgcccccgccg---------gtatccaccaggggcggcggg---gga 162
|||||||| |||||||| |||||| |||||||||||| ||||||| |||
Sbjct: 225 ccgcccgccaggtcgccgccgccgccgctgccggtatccaccaggagcggcggcagcgga 284
Query: 163 ggggtggggtcggcgtggtgcttcagcgatccggagatgaaaaggcggcggcgggtggcc 222
|||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 285 ggggcggggtcggcgtggtgcttcagcgacccggagatgaagaggcggcggcgggtggcg 344
Query: 223 agctacaaggcttactcggcggagggcaaagtcaaggcatcgttccccaggggattccgc 282
||||||||||| ||||||| |||||||||||||||||||||||||| |||||| ||||||
Sbjct: 345 agctacaaggcctactcggtggagggcaaagtcaaggcatcgttccgcagggggttccgc 404
Query: 283 tggatcaaggccaagtgctccgagctcatccatggctgaacccggcatct 332
||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 405 tggatcaaggccaagtgctccgagctcatccatggctgaacccggtatct 454
>gb|CD428012.1|CD428012 ETH1_32_G01.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_32_G01_A002 3', mRNA sequence
Length = 555
Score = 345 bits (174), Expect = 3e-093
Identities = 289/328 (88%), Gaps = 12/328 (3%)
Strand = Plus / Plus
Query: 69 cgaggtcgtgccctacggtgaccgccgcatcgacatcatcgtcaagccgcccgcgaggtc 128
|||||||||||| ||||| ||||| ||| |||||||| |||||||||||||||| |||||
Sbjct: 1 cgaggtcgtgccgtacggcgaccggcgcctcgacatcgtcgtcaagccgcccgccaggtc 60
Query: 129 gcccccgccg---------gtatccaccaggggcggcggg---ggaggggtggggtcggc 176
||| |||||| |||||||||||| ||||||| ||||||| ||||| |||
Sbjct: 61 gccgccgccgccgctgccggtatccaccaggagcggcggcagcggaggggcggggttggc 120
Query: 177 gtggtgcttcagcgatccggagatgaaaaggcggcggcgggtggccagctacaaggctta 236
||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct: 121 gtggtgcttcagcgacccggagatgaagaggcggcggcgggtggcgagctacaaggccta 180
Query: 237 ctcggcggagggcaaagtcaaggcatcgttccccaggggattccgctggatcaaggccaa 296
||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 181 ctcggtggagggcaaagtcaaggcatcgttccgcagggggttccgctggatcaaggccaa 240
Query: 297 gtgctccgagctcatccatggctgaacccggcatctcggtgaaattctattgtattggca 356
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
Sbjct: 241 gtgctccgagctcatccatggctgaacccggtatctcggtgaaattctatcctattggga 300
Query: 357 tggtgcaagatgcggctacaaagcgcga 384
||||| ||| || ||||||| ||||||
Sbjct: 301 tggtggaaggtggagctacaacgcgcga 328
Score = 137 bits (69), Expect = 1e-030
Identities = 153/175 (87%), Gaps = 7/175 (4%)
Strand = Plus / Plus
Query: 408 tcgctaattcgctctcaaaatgtggaagagaatttgttctgagattgtgtagagaacttt 467
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 349 tcgctaattcgctcccaaaatgtggaagagaaattgttctgagattgtgtagagaac-tt 407
Query: 468 gttgccccc--ctggttataggaaaagaactcgatggagatctgctgagattacttgtcg 525
|| |||||| |||||||||||||||||||| | || | ||| ||||| || |||||||
Sbjct: 408 gtggcccccctctggttataggaaaagaactag-tg--gctcttctgagcttgcttgtcg 464
Query: 526 ctacctgccaattgcccctaattctgttcaaaaaatgtttgaagaagacttgaat 580
|| ||||| |||| ||||||||| || || ||| |||||||||||||| ||||||
Sbjct: 465 ctgcctgctaattacccctaattttg-tccaaacatgtttgaagaagaattgaat 518
>gb|CW792281.1|CW792281 SP__Ba0090M09.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0090M09 3', DNA sequence
Length = 752
Score = 137 bits (69), Expect = 1e-030
Identities = 156/179 (87%), Gaps = 7/179 (3%)
Strand = Plus / Plus
Query: 404 tatttcgctaattcgctctcaaaatgtggaagagaatttgttctgagattgtgtagagaa 463
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 161 tatttcgctaattcgctcccaaaatgtggaagagaaattgttctgagattgtgtagagaa 220
Query: 464 ctttgttgccccc--ctggttataggaaaagaactcgatggagatctgctgagattactt 521
| |||| |||||| |||||||||||||||||||| | || | ||| ||||| || ||
Sbjct: 221 c-ttgtggcccccctctggttataggaaaagaactag-tg--gctcttctgagcttgatt 276
Query: 522 gtcgctacctgccaattgcccctaattctgttcaaaaaatgtttgaagaagacttgaat 580
|||||| ||||| |||| ||||||||| || || ||| |||||||||||||| ||||||
Sbjct: 277 gtcgctgcctgctaattacccctaattttg-tccaaacatgtttgaagaagaattgaat 334
>gb|CD226797.1|CD226797 CCC1_48_D11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_48_D11_A007 3', mRNA sequence
Length = 624
Score = 131 bits (66), Expect = 8e-029
Identities = 137/156 (87%), Gaps = 6/156 (3%)
Strand = Plus / Plus
Query: 404 tatttcgctaattcgctctcaaaatgtggaagagaatttgttctgagattgtgtagagaa 463
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 448 tatttcgctaattcgctcccaaaatgtggaagagaaattgttctgagattgtgtagagaa 507
Query: 464 ctttgttgccccc--ctggttataggaaaagaactcgatggagatctgctgagattactt 521
| |||| |||||| |||||||||||||||||||| | || | ||| ||||| || |||
Sbjct: 508 c-ttgtggcccccctctggttataggaaaagaactag-tg--gctcttctgagcttgctt 563
Query: 522 gtcgctacctgccaattgcccctaattctgttcaaa 557
|||||| ||||| |||| ||||||||| ||| ||||
Sbjct: 564 gtcgctgcctgctaattacccctaattttgtccaaa 599
>gb|CW393428.1|CW393428 fsbb001f080h19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f080h19, DNA
sequence
Length = 759
Score = 79.8 bits (40), Expect = 3e-013
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 177 gtggtgcttcagcgatccggagatgaaaaggcggcggcgggtggccagctacaaggctta 236
||||||| ||||||| ||||||||||| ||||||| ||||||| ||||||||||| ||
Sbjct: 731 gtggtgcctcagcgacccggagatgaagcggcggcgaagggtggcgagctacaaggccta 672
Query: 237 ctcggcggagggcaaagtcaaggc 260
||||| ||||||||| || |||||
Sbjct: 671 ctcggtggagggcaaggtgaaggc 648
>gb|CD463375.1|CD463375 ETH1_44_H09.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_44_H09_A002 3', mRNA sequence
Length = 635
Score = 79.8 bits (40), Expect = 3e-013
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 177 gtggtgcttcagcgatccggagatgaaaaggcggcggcgggtggccagctacaaggctta 236
||||||| ||||||| ||||||||||| ||||||| ||||||| ||||||||||| ||
Sbjct: 227 gtggtgcctcagcgacccggagatgaagcggcggcgaagggtggcgagctacaaggccta 286
Query: 237 ctcggcggagggcaaagtcaaggc 260
||||| ||||||||| || |||||
Sbjct: 287 ctcggtggagggcaaggtgaaggc 310
>gb|CD463457.1|CD463457 ETH1_44_H09.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_44_H09_A002 5', mRNA sequence
Length = 665
Score = 79.8 bits (40), Expect = 3e-013
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 177 gtggtgcttcagcgatccggagatgaaaaggcggcggcgggtggccagctacaaggctta 236
||||||| ||||||| ||||||||||| ||||||| ||||||| ||||||||||| ||
Sbjct: 432 gtggtgcctcagcgacccggagatgaagcggcggcgaagggtggcgagctacaaggccta 491
Query: 237 ctcggcggagggcaaagtcaaggc 260
||||| ||||||||| || |||||
Sbjct: 492 ctcggtggagggcaaggtgaaggc 515
>gb|CW407903.1|CW407903 fsbb001f101j04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f101j04, DNA
sequence
Length = 517
Score = 42.1 bits (21), Expect = 0.058
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 96 catcgacatcatcgtcaagccgccc 120
|||||||||||||| ||||||||||
Sbjct: 409 catcgacatcatcgccaagccgccc 385
>gb|CL183852.1|CL183852 104_396_10898448_116_31924_288 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898448, DNA
sequence
Length = 446
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 280 cgctggatcaaggccaagtg 299
||||||||||||||||||||
Sbjct: 406 cgctggatcaaggccaagtg 387
>gb|CW160393.1|CW160393 104_566_11149858_148_36426_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11149858, DNA
sequence
Length = 726
Score = 40.1 bits (20), Expect = 0.23
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 196 gagatgaaaaggcggcggcgggtggccagctacaaggcttactcggcggagggcaa 251
|||||||| ||||||||||||| || |||||||||| ||| ||| | |||||||
Sbjct: 86 gagatgaagcggcggcggcgggttgcgggctacaaggcgtacgcggtgaagggcaa 31
>gb|CW432137.1|CW432137 fsbb001f146k24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f146k24, DNA
sequence
Length = 510
Score = 40.1 bits (20), Expect = 0.23
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 196 gagatgaaaaggcggcggcgggtggccagctacaaggcttactcggcggagggcaa 251
|||||||| ||||||||||||| || |||||||||| ||| ||| | |||||||
Sbjct: 307 gagatgaagcggcggcggcgggttgcgggctacaaggcgtacgcggtgaagggcaa 252
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 232,083
Number of Sequences: 832831
Number of extensions: 232083
Number of successful extensions: 55899
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55868
Number of HSP's gapped (non-prelim): 25
length of query: 606
length of database: 491,359,669
effective HSP length: 19
effective length of query: 587
effective length of database: 475,535,880
effective search space: 279139561560
effective search space used: 279139561560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)