BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2907809.2.1
(614 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW923345.1|AW923345 DG1_51_G07.b1_A002 Dark Grown 1 (DG1... 371 e-101
gb|AW924069.1|AW924069 WS1_49_H11.b1_A002 Water-stressed 1 ... 371 e-101
gb|CD462226.1|CD462226 SA1_40_G07.b1_A002 Salicylic acid-tr... 371 e-101
gb|CD462310.1|CD462310 SA1_40_G07.g1_A002 Salicylic acid-tr... 371 e-101
gb|CF071260.1|CF071260 FE1_16_C11.b1_A002 Iron-deficient se... 371 e-101
gb|CF071310.1|CF071310 FE1_16_C11.g1_A002 Iron-deficient se... 371 e-101
gb|CF430120.1|CF430120 PH1_26_A07.b1_A002 Phosphorous-defic... 371 e-101
gb|CF430172.1|CF430172 PH1_26_A07.g1_A002 Phosphorous-defic... 371 e-101
gb|CX606228.1|CX606228 ANR1_1_G09.g1_A002 Anaerobic roots S... 371 e-101
gb|CX613695.1|CX613695 GABR1_9_E01.g1_A002 GA- or brassinol... 371 e-101
gb|CF434229.1|CF434229 NIT1_29_D08.b1_A002 Nitrogen-deficie... 363 1e-098
gb|CN144192.1|CN144192 WOUND1_20_F01.g1_A002 Wounded leaves... 363 1e-098
gb|CX606135.1|CX606135 ANR1_1_G09.b1_A002 Anaerobic roots S... 355 3e-096
gb|AI724411.1|AI724411 RHIZ1_36_D03.y2_A001 Rhizome1 (RHIZ1... 353 1e-095
gb|CF434333.1|CF434333 NIT1_29_D08.g1_A002 Nitrogen-deficie... 341 5e-092
gb|CF073841.1|CF073841 FE1_12_H01.g1_A002 Iron-deficient se... 337 7e-091
gb|CF073870.1|CF073870 FE1_12_B02.g1_A002 Iron-deficient se... 337 7e-091
gb|CF071649.1|CF071649 FE1_17_D07.g1_A002 Iron-deficient se... 335 3e-090
gb|AW746392.1|AW746392 WS1_49_H11.g1_A002 Water-stressed 1 ... 323 1e-086
gb|AW746636.1|AW746636 WS1_54_B04.b1_A002 Water-stressed 1 ... 297 6e-079
gb|BE358653.1|BE358653 DG1_30_F11.g1_A002 Dark Grown 1 (DG1... 276 2e-072
gb|CW092300.1|CW092300 104_454_10999068_116_33041_036 Sorgh... 200 1e-049
gb|CW308818.1|CW308818 104_797_11468871_148_35725_058 Sorgh... 200 1e-049
gb|CW408142.1|CW408142 fsbb001f101o13f0 Sorghum methylation... 200 1e-049
gb|AW923420.1|AW923420 DG1_51_G07.g1_A002 Dark Grown 1 (DG1... 149 4e-034
gb|AW671475.1|AW671475 LG1_347_C08.b1_A002 Light Grown 1 (L... 125 5e-027
gb|AW747681.1|AW747681 WS1_75_B10.g1_A002 Water-stressed 1 ... 125 5e-027
gb|AW925081.1|AW925081 WS1_75_B10.b1_A002 Water-stressed 1 ... 125 5e-027
gb|BE593786.1|BE593786 WS1_102_B10.g1_A002 Water-stressed 1... 125 5e-027
gb|BE594099.1|BE594099 WS1_102_B10.b1_A002 Water-stressed 1... 125 5e-027
gb|BE598329.1|BE598329 PI1_81_G08.g1_A002 Pathogen induced ... 125 5e-027
gb|BE598670.1|BE598670 PI1_81_G08.b1_A002 Pathogen induced ... 125 5e-027
gb|BE917631.1|BE917631 OV1_6_B05.g1_A002 Ovary 1 (OV1) Sorg... 125 5e-027
gb|BE917708.1|BE917708 OV1_6_B05.b1_A002 Ovary 1 (OV1) Sorg... 125 5e-027
gb|BF657366.1|BF657366 OV2_24_B07.g1_A002 Ovary 2 (OV2) Sor... 125 5e-027
gb|BF657438.1|BF657438 OV2_24_B07.b1_A002 Ovary 2 (OV2) Sor... 125 5e-027
gb|BG050425.1|BG050425 FM1_69_A05.g1_A003 Floral-Induced Me... 125 5e-027
gb|BG050559.1|BG050559 FM1_69_A05.b1_A003 Floral-Induced Me... 125 5e-027
gb|BG050745.1|BG050745 FM1_70_A04.b1_A003 Floral-Induced Me... 125 5e-027
gb|BG933158.1|BG933158 WS1_29_H08.b1_A002 Water-stressed 1 ... 125 5e-027
gb|BI351376.1|BI351376 IP1_70_G08.b1_A002 Immature pannicle... 125 5e-027
gb|BI643767.1|BI643767 IP1_56_G11.b1_A002 Immature pannicle... 125 5e-027
gb|CD221158.1|CD221158 CCC1_74_G04.b1_A007 Callus culture/c... 125 5e-027
gb|CD221265.1|CD221265 CCC1_74_G04.g1_A007 Callus culture/c... 125 5e-027
gb|CD430389.1|CD430389 ETH1_18_D03.g1_A002 Ethylene-treated... 125 5e-027
gb|CW308817.1|CW308817 104_797_11468871_116_35721_058 Sorgh... 123 2e-026
gb|BZ333122.1|BZ333122 hx32h12.b1 WGS-SbicolorF (JM107 adap... 117 1e-024
gb|BF506867.1|BF506867 10143P-19a Pooled green leaf and roo... 107 1e-021
gb|BG050487.1|BG050487 FM1_70_A04.g1_A003 Floral-Induced Me... 96 5e-018
gb|AW922493.1|AW922493 DG1_19_A06.g1_A002 Dark Grown 1 (DG1... 90 3e-016
gb|CW230900.1|CW230900 104_680_11210841_148_37337_047 Sorgh... 78 1e-012
gb|BI351172.1|BI351172 IP1_70_G08.g1_A002 Immature pannicle... 76 4e-012
gb|BZ366427.1|BZ366427 ic96h10.g1 WGS-SbicolorF (JM107 adap... 70 3e-010
gb|BZ331996.1|BZ331996 hx24f04.g1 WGS-SbicolorF (JM107 adap... 64 2e-008
gb|CW200640.1|CW200640 104_626_11184156_116_36868_044 Sorgh... 64 2e-008
gb|CW408143.1|CW408143 fsbb001f101o13k0 Sorghum methylation... 64 2e-008
gb|AW746705.1|AW746705 WS1_54_B04.g1_A002 Water-stressed 1 ... 64 2e-008
gb|BF506876.1|BF506876 10143P-6 Pooled green leaf and root ... 64 2e-008
gb|CW092299.1|CW092299 104_454_10999068_114_33037_036 Sorgh... 62 6e-008
gb|CW161870.1|CW161870 104_568_11150638_116_36436_081 Sorgh... 54 2e-005
gb|CW468030.1|CW468030 fsbb001f219p13f0 Sorghum methylation... 40 0.23
gb|CW468031.1|CW468031 fsbb001f219p13k0 Sorghum methylation... 40 0.23
>gb|AW923345.1|AW923345 DG1_51_G07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 504
Score = 371 bits (187), Expect = e-101
Identities = 232/247 (93%)
Strand = Plus / Plus
Query: 121 gccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaag 180
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 106 gccatgggcggcggcaacggccagaagtccaagatggcgcgggagaggaacgccgagaag 165
Query: 181 aacaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgc 240
||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 166 aacaagggctccaaaggcagtcagctggagacaaacaagaaggccatgaacatccagtgc 225
Query: 241 aagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaacatgcg 300
|||||||| |||||||| || |||||||||||||| ||||||||||||||||| |||||
Sbjct: 226 aagatctgtatgcagacttttatctgcaccacctctgaggccaagtgcaaagagcatgcc 285
Query: 301 gaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaactagtaa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 286 gaggcgaggcatcccaagaatgacctctaccagtgcttcccccacctcaagaattagtaa 345
Query: 361 gcagcag 367
|||||||
Sbjct: 346 gcagcag 352
>gb|AW924069.1|AW924069 WS1_49_H11.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 590
Score = 371 bits (187), Expect = e-101
Identities = 232/247 (93%)
Strand = Plus / Plus
Query: 121 gccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaag 180
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 77 gccatgggcggcggcaacggccagaagtccaagatggcgcgggagaggaacgccgagaag 136
Query: 181 aacaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgc 240
||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 137 aacaagggctccaaaggcagtcagctggagacaaacaagaaggccatgaacatccagtgc 196
Query: 241 aagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaacatgcg 300
|||||||| |||||||| || |||||||||||||| ||||||||||||||||| |||||
Sbjct: 197 aagatctgtatgcagacttttatctgcaccacctctgaggccaagtgcaaagagcatgcc 256
Query: 301 gaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaactagtaa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 257 gaggcgaggcatcccaagaatgacctctaccagtgcttcccccacctcaagaattagtaa 316
Query: 361 gcagcag 367
|||||||
Sbjct: 317 gcagcag 323
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 483 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 542
>gb|CD462226.1|CD462226 SA1_40_G07.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_40_G07_A002 3', mRNA sequence
Length = 529
Score = 371 bits (187), Expect = e-101
Identities = 232/247 (93%)
Strand = Plus / Plus
Query: 121 gccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaag 180
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 31 gccatgggcggcggcaacggccagaagtccaagatggcgcgggagaggaacgccgagaag 90
Query: 181 aacaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgc 240
||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 91 aacaagggctccaaaggcagtcagctggagacaaacaagaaggccatgaacatccagtgc 150
Query: 241 aagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaacatgcg 300
|||||||| |||||||| || |||||||||||||| ||||||||||||||||| |||||
Sbjct: 151 aagatctgtatgcagacttttatctgcaccacctctgaggccaagtgcaaagagcatgcc 210
Query: 301 gaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaactagtaa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 211 gaggcgaggcatcccaagaatgacctctaccagtgcttcccccacctcaagaattagtaa 270
Query: 361 gcagcag 367
|||||||
Sbjct: 271 gcagcag 277
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 437 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 496
>gb|CD462310.1|CD462310 SA1_40_G07.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_40_G07_A002 5', mRNA sequence
Length = 545
Score = 371 bits (187), Expect = e-101
Identities = 232/247 (93%)
Strand = Plus / Plus
Query: 121 gccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaag 180
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 20 gccatgggcggcggcaacggccagaagtccaagatggcgcgggagaggaacgccgagaag 79
Query: 181 aacaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgc 240
||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 80 aacaagggctccaaaggcagtcagctggagacaaacaagaaggccatgaacatccagtgc 139
Query: 241 aagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaacatgcg 300
|||||||| |||||||| || |||||||||||||| ||||||||||||||||| |||||
Sbjct: 140 aagatctgtatgcagacttttatctgcaccacctctgaggccaagtgcaaagagcatgcc 199
Query: 301 gaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaactagtaa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 200 gaggcgaggcatcccaagaatgacctctaccagtgcttcccccacctcaagaattagtaa 259
Query: 361 gcagcag 367
|||||||
Sbjct: 260 gcagcag 266
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 426 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 485
>gb|CF071260.1|CF071260 FE1_16_C11.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_16_C11_A002 3', mRNA sequence
Length = 666
Score = 371 bits (187), Expect = e-101
Identities = 232/247 (93%)
Strand = Plus / Minus
Query: 121 gccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaag 180
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 568 gccatgggcggcggcaacggccagaagtccaagatggcgcgggagaggaacgccgagaag 509
Query: 181 aacaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgc 240
||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 508 aacaagggctccaaaggcagtcagctggagacaaacaagaaggccatgaacatccagtgc 449
Query: 241 aagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaacatgcg 300
|||||||| |||||||| || |||||||||||||| ||||||||||||||||| |||||
Sbjct: 448 aagatctgtatgcagacttttatctgcaccacctctgaggccaagtgcaaagagcatgcc 389
Query: 301 gaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaactagtaa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 388 gaggcgaggcatcccaagaatgacctctaccagtgcttcccccacctcaagaattagtaa 329
Query: 361 gcagcag 367
|||||||
Sbjct: 328 gcagcag 322
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 162 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 103
>gb|CF071310.1|CF071310 FE1_16_C11.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_16_C11_A002 5', mRNA sequence
Length = 623
Score = 371 bits (187), Expect = e-101
Identities = 232/247 (93%)
Strand = Plus / Minus
Query: 121 gccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaag 180
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 526 gccatgggcggcggcaacggccagaagtccaagatggcgcgggagaggaacgccgagaag 467
Query: 181 aacaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgc 240
||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 466 aacaagggctccaaaggcagtcagctggagacaaacaagaaggccatgaacatccagtgc 407
Query: 241 aagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaacatgcg 300
|||||||| |||||||| || |||||||||||||| ||||||||||||||||| |||||
Sbjct: 406 aagatctgtatgcagacttttatctgcaccacctctgaggccaagtgcaaagagcatgcc 347
Query: 301 gaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaactagtaa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 346 gaggcgaggcatcccaagaatgacctctaccagtgcttcccccacctcaagaattagtaa 287
Query: 361 gcagcag 367
|||||||
Sbjct: 286 gcagcag 280
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 120 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 61
>gb|CF430120.1|CF430120 PH1_26_A07.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_26_A07_A002 3', mRNA sequence
Length = 675
Score = 371 bits (187), Expect = e-101
Identities = 232/247 (93%)
Strand = Plus / Minus
Query: 121 gccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaag 180
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 555 gccatgggcggcggcaacggccagaagtccaagatggcgcgggagaggaacgccgagaag 496
Query: 181 aacaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgc 240
||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 495 aacaagggctccaaaggcagtcagctggagacaaacaagaaggccatgaacatccagtgc 436
Query: 241 aagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaacatgcg 300
|||||||| |||||||| || |||||||||||||| ||||||||||||||||| |||||
Sbjct: 435 aagatctgtatgcagacttttatctgcaccacctctgaggccaagtgcaaagagcatgcc 376
Query: 301 gaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaactagtaa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 375 gaggcgaggcatcccaagaatgacctctaccagtgcttcccccacctcaagaattagtaa 316
Query: 361 gcagcag 367
|||||||
Sbjct: 315 gcagcag 309
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 149 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 90
>gb|CF430172.1|CF430172 PH1_26_A07.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_26_A07_A002 5', mRNA sequence
Length = 652
Score = 371 bits (187), Expect = e-101
Identities = 232/247 (93%)
Strand = Plus / Minus
Query: 121 gccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaag 180
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 559 gccatgggcggcggcaacggccagaagtccaagatggcgcgggagaggaacgccgagaag 500
Query: 181 aacaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgc 240
||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 499 aacaagggctccaaaggcagtcagctggagacaaacaagaaggccatgaacatccagtgc 440
Query: 241 aagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaacatgcg 300
|||||||| |||||||| || |||||||||||||| ||||||||||||||||| |||||
Sbjct: 439 aagatctgtatgcagacttttatctgcaccacctctgaggccaagtgcaaagagcatgcc 380
Query: 301 gaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaactagtaa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 379 gaggcgaggcatcccaagaatgacctctaccagtgcttcccccacctcaagaattagtaa 320
Query: 361 gcagcag 367
|||||||
Sbjct: 319 gcagcag 313
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 153 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 94
>gb|CX606228.1|CX606228 ANR1_1_G09.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_1_G09_A002 5', mRNA sequence
Length = 608
Score = 371 bits (187), Expect = e-101
Identities = 232/247 (93%)
Strand = Plus / Plus
Query: 121 gccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaag 180
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 75 gccatgggcggcggcaacggccagaagtccaagatggcgcgggagaggaacgccgagaag 134
Query: 181 aacaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgc 240
||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 135 aacaagggctccaaaggcagtcagctggagacaaacaagaaggccatgaacatccagtgc 194
Query: 241 aagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaacatgcg 300
|||||||| |||||||| || |||||||||||||| ||||||||||||||||| |||||
Sbjct: 195 aagatctgtatgcagacttttatctgcaccacctctgaggccaagtgcaaagagcatgcc 254
Query: 301 gaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaactagtaa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 255 gaggcgaggcatcccaagaatgacctctaccagtgcttcccccacctcaagaattagtaa 314
Query: 361 gcagcag 367
|||||||
Sbjct: 315 gcagcag 321
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 481 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 540
>gb|CX613695.1|CX613695 GABR1_9_E01.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_9_E01_A002 5', mRNA sequence
Length = 543
Score = 371 bits (187), Expect = e-101
Identities = 232/247 (93%)
Strand = Plus / Plus
Query: 121 gccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaag 180
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 22 gccatgggcggcggcaacggccagaagtccaagatggcgcgggagaggaacgccgagaag 81
Query: 181 aacaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgc 240
||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 82 aacaagggctccaaaggcagtcagctggagacaaacaagaaggccatgaacatccagtgc 141
Query: 241 aagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaacatgcg 300
|||||||| |||||||| || |||||||||||||| ||||||||||||||||| |||||
Sbjct: 142 aagatctgtatgcagacttttatctgcaccacctctgaggccaagtgcaaagagcatgcc 201
Query: 301 gaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaactagtaa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 202 gaggcgaggcatcccaagaatgacctctaccagtgcttcccccacctcaagaattagtaa 261
Query: 361 gcagcag 367
|||||||
Sbjct: 262 gcagcag 268
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 428 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 487
>gb|CF434229.1|CF434229 NIT1_29_D08.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_29_D08_A002 3', mRNA sequence
Length = 676
Score = 363 bits (183), Expect = 1e-098
Identities = 231/247 (93%)
Strand = Plus / Minus
Query: 121 gccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaag 180
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 556 gccatgggcggcggcaacggccagaagtccaagatggcgcgggagaggaacgccgagaag 497
Query: 181 aacaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgc 240
||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 496 aacaagggctccaaaggcagtcagctggagacaaacaagaaggccatgaacatccagtgc 437
Query: 241 aagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaacatgcg 300
|||||||| |||||||| || |||||||||||||| |||||||| |||||||| |||||
Sbjct: 436 aagatctgtatgcagacttttatctgcaccacctctgaggccaactgcaaagagcatgcc 377
Query: 301 gaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaactagtaa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 376 gaggcgaggcatcccaagaatgacctctaccagtgcttcccccacctcaagaattagtaa 317
Query: 361 gcagcag 367
|||||||
Sbjct: 316 gcagcag 310
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 150 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 91
>gb|CN144192.1|CN144192 WOUND1_20_F01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_20_F01_A002 5', mRNA sequence
Length = 579
Score = 363 bits (183), Expect = 1e-098
Identities = 231/247 (93%)
Strand = Plus / Plus
Query: 121 gccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaag 180
||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 75 gccatgggcggcggctacggccagaagtccaagatggcgcgggagaggaacgccgagaag 134
Query: 181 aacaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgc 240
||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 135 aacaagggctccaaaggcagtcagctggagacaaacaagaaggccatgaacatccagtgc 194
Query: 241 aagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaacatgcg 300
|||||||| |||||||| || |||||||||||||| ||||||||||||||||| |||||
Sbjct: 195 aagatctgtatgcagacttttatctgcaccacctctgaggccaagtgcaaagagcatgcc 254
Query: 301 gaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaactagtaa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 255 gaggcgaggcatcccaagaatgacctctaccagtgcttcccccacctcaagaattagtaa 314
Query: 361 gcagcag 367
|||||||
Sbjct: 315 gcagcag 321
Score = 61.9 bits (31), Expect = 6e-008
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaa 532
|||||||||| ||| | |||||| ||||| |||| |||||||||||| |||||||||||
Sbjct: 481 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaa 539
>gb|CX606135.1|CX606135 ANR1_1_G09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_1_G09_A002 3', mRNA sequence
Length = 578
Score = 355 bits (179), Expect = 3e-096
Identities = 230/247 (93%)
Strand = Plus / Plus
Query: 121 gccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaag 180
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 83 gccatgggcggcggcaacggccagaagtccaagatggcgcgggagaggaacgccgagaag 142
Query: 181 aacaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgc 240
||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 143 aacaagggctccaaaggcagtcagctggagacaaacaagaaggccatgaacatccagtgc 202
Query: 241 aagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaacatgcg 300
|||||||| |||||||| || || ||||||||||| ||||||||||||||||| |||||
Sbjct: 203 aagatctgtatgcagacttttatttgcaccacctctgaggccaagtgcaaagagcatgcc 262
Query: 301 gaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaactagtaa 360
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct: 263 gaggcgaggcatcccaagaatgacctttaccagtgcttcccccacctcaagaattagtaa 322
Query: 361 gcagcag 367
|||||||
Sbjct: 323 gcagcag 329
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 489 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 548
>gb|AI724411.1|AI724411 RHIZ1_36_D03.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 492
Score = 353 bits (178), Expect = 1e-095
Identities = 214/226 (94%)
Strand = Plus / Plus
Query: 142 cagaagtccaagatggcgcgcgagaggaacgccgagaagaacaagggcggcaaaggcagc 201
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 1 cagaagtccaagatggcgcgggagaggaacgccgagaagaacaagggctccaaaggcagt 60
Query: 202 cagctggaggccaacaagaaggccatgaacatccagtgcaagatctgcatgcagaccttc 261
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 61 cagctggagaccaacaagaaggccatgaacatccagtgcaagatctgtatgcagactttc 120
Query: 262 atctgcaccacctccgaggccaagtgcaaagaacatgcggaggcgaggcatcccaagaac 321
|||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 121 atctgcaccacctctgaggccaagtgcaaagagcatgccgaggcgaggcatcccaagaat 180
Query: 322 gacctctaccagtgcttcccccacctcaagaactagtaagcagcag 367
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 181 gacctctaccagtgcttcccccacctcaagaattagtaagcagcag 226
>gb|CF434333.1|CF434333 NIT1_29_D08.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_29_D08_A002 5', mRNA sequence
Length = 662
Score = 341 bits (172), Expect = 5e-092
Identities = 230/248 (92%), Gaps = 1/248 (0%)
Strand = Plus / Minus
Query: 121 gccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaag 180
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 611 gccatgggcggcggcaacggccagaagtccaagatggcgcgggagaggaacgccgagaaa 552
Query: 181 aacaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgc 240
||||||||| ||||||||| ||||||||| | |||||||||||||||||| ||||||||
Sbjct: 551 aacaagggctccaaaggcagtcagctggagacaaacaagaaggccatgaacttccagtgc 492
Query: 241 aagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaacatgcg 300
|||||||| |||||||| || |||||||||||||| ||||||||||||||||| |||||
Sbjct: 491 aagatctgtatgcagacttttatctgcaccacctctgaggccaagtgcaaagagcatgcc 432
Query: 301 gaggcgaggcatcccaagaacgacctctaccagtgcttcccccacc-tcaagaactagta 359
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||
Sbjct: 431 gaggcgaggcatcccaagaatgacctctaccagtgcttcccccaccttcaagaattagta 372
Query: 360 agcagcag 367
||||||||
Sbjct: 371 agcagcag 364
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 204 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 145
>gb|CF073841.1|CF073841 FE1_12_H01.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_12_H01_A002 5', mRNA sequence
Length = 619
Score = 337 bits (170), Expect = 7e-091
Identities = 212/226 (93%)
Strand = Plus / Minus
Query: 142 cagaagtccaagatggcgcgcgagaggaacgccgagaagaacaagggcggcaaaggcagc 201
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 521 cagaagtccaagatggcgcgggagaggaacgccgagaagaacaagggctccaaaggcagt 462
Query: 202 cagctggaggccaacaagaaggccatgaacatccagtgcaagatctgcatgcagaccttc 261
||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 461 cagctggagacaaacaagaaggccatgaacatccagtgcaagatctgtatgcagactttt 402
Query: 262 atctgcaccacctccgaggccaagtgcaaagaacatgcggaggcgaggcatcccaagaac 321
|||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 401 atctgcaccacctctgaggccaagtgcaaagagcatgccgaggcgaggcatcccaagaat 342
Query: 322 gacctctaccagtgcttcccccacctcaagaactagtaagcagcag 367
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 341 gacctctaccagtgcttcccccacctcaagaattagtaagcagcag 296
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 136 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 77
>gb|CF073870.1|CF073870 FE1_12_B02.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_12_B02_A002 5', mRNA sequence
Length = 527
Score = 337 bits (170), Expect = 7e-091
Identities = 212/226 (93%)
Strand = Plus / Minus
Query: 142 cagaagtccaagatggcgcgcgagaggaacgccgagaagaacaagggcggcaaaggcagc 201
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 518 cagaagtccaagatggcgcgggagaggaacgccgagaagaacaagggctccaaaggcagt 459
Query: 202 cagctggaggccaacaagaaggccatgaacatccagtgcaagatctgcatgcagaccttc 261
||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 458 cagctggagacaaacaagaaggccatgaacatccagtgcaagatctgtatgcagactttt 399
Query: 262 atctgcaccacctccgaggccaagtgcaaagaacatgcggaggcgaggcatcccaagaac 321
|||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 398 atctgcaccacctctgaggccaagtgcaaagagcatgccgaggcgaggcatcccaagaat 339
Query: 322 gacctctaccagtgcttcccccacctcaagaactagtaagcagcag 367
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 338 gacctctaccagtgcttcccccacctcaagaattagtaagcagcag 293
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 133 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 74
>gb|CF071649.1|CF071649 FE1_17_D07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_17_D07_A002 5', mRNA sequence
Length = 645
Score = 335 bits (169), Expect = 3e-090
Identities = 223/241 (92%)
Strand = Plus / Minus
Query: 127 ggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaagaacaag 186
||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 527 ggcggcggcggcggccagaagtccaagatggcgcgggagaggaacgccgagaagaacaag 468
Query: 187 ggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgcaagatc 246
||| ||||||||| ||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 467 ggctccaaaggcagtcagctggagacaaacaagaaggccatgaacatccagtgcaagatc 408
Query: 247 tgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaacatgcggaggcg 306
|| |||||||| || ||| |||||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 407 tgtatgcagacttttatccgcaccacctctgaggccaagtgcaaagagcatgccgaggcg 348
Query: 307 aggcatcccaagaacgacctctaccagtgcttcccccacctcaagaactagtaagcagca 366
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 347 aggcatcccaagaatgacctctaccagtgcttcccccacctcaagaattagtaagcagca 288
Query: 367 g 367
|
Sbjct: 287 g 287
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 127 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 68
>gb|AW746392.1|AW746392 WS1_49_H11.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 516
Score = 323 bits (163), Expect = 1e-086
Identities = 226/247 (91%)
Strand = Plus / Plus
Query: 121 gccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaag 180
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 36 gccatgggcggcggcaacggccagaagtccaagatggcgcgggagaggaacgccgagaag 95
Query: 181 aacaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgc 240
|||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct: 96 aacaagggttccaaaggcagtcagctggagacaaacaagaaggccatgaacatccagtgc 155
Query: 241 aagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaacatgcg 300
||||| || |||||||| || || |||||||||| ||||||||||||||||| |||||
Sbjct: 156 aagatttgtatgcagacttttatttgcaccacctttgaggccaagtgcaaagagcatgcc 215
Query: 301 gaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaactagtaa 360
|||||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||
Sbjct: 216 gaggcgaggcatcccaagaatgacctttaccagtgcttcccccccctcaagaattagtaa 275
Query: 361 gcagcag 367
|||||||
Sbjct: 276 gcagcag 282
Score = 56.0 bits (28), Expect = 4e-006
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| | | | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 442 gtgttgccccatttaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 501
>gb|AW746636.1|AW746636 WS1_54_B04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 486
Score = 297 bits (150), Expect = 6e-079
Identities = 192/206 (93%)
Strand = Plus / Plus
Query: 162 cgagaggaacgccgagaagaacaagggcggcaaaggcagccagctggaggccaacaagaa 221
|||| ||||||||||||||||||||||| ||||||||| ||||||||| | ||||||||
Sbjct: 4 cgaggggaacgccgagaagaacaagggctccaaaggcagtcagctggagacaaacaagaa 63
Query: 222 ggccatgaacatccagtgcaagatctgcatgcagaccttcatctgcaccacctccgaggc 281
||||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||
Sbjct: 64 ggccatgaacatccagtgcaagatctgtatgcagacttttatctgcaccacctctgaggc 123
Query: 282 caagtgcaaagaacatgcggaggcgaggcatcccaagaacgacctctaccagtgcttccc 341
|||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 124 caagtgcaaagagcatgccgaggcgaggcatcccaagaatgacctctaccagtgcttccc 183
Query: 342 ccacctcaagaactagtaagcagcag 367
|||||||||||| |||||||||||||
Sbjct: 184 ccacctcaagaattagtaagcagcag 209
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 369 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 428
>gb|BE358653.1|BE358653 DG1_30_F11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 687
Score = 276 bits (139), Expect = 2e-072
Identities = 178/191 (93%)
Strand = Plus / Plus
Query: 177 gaagaacaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatcca 236
||||||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||
Sbjct: 236 gaagaacaagggctccaaaggcagtcagctggagacaaacaagaaggccatgaacatcca 295
Query: 237 gtgcaagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaaca 296
|||||||||||| |||||||| || |||||||||||||| ||||||||||||||||| ||
Sbjct: 296 gtgcaagatctgtatgcagacttttatctgcaccacctctgaggccaagtgcaaagagca 355
Query: 297 tgcggaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaacta 356
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 356 tgccgaggcgaggcatcccaagaatgacctctaccagtgcttcccccacctcaagaatta 415
Query: 357 gtaagcagcag 367
|||||||||||
Sbjct: 416 gtaagcagcag 426
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 586 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 645
>gb|CW092300.1|CW092300 104_454_10999068_116_33041_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10999068, DNA
sequence
Length = 556
Score = 200 bits (101), Expect = 1e-049
Identities = 125/133 (93%)
Strand = Plus / Minus
Query: 235 cagtgcaagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaa 294
|||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||
Sbjct: 203 cagtgcaagatctgtatgcagacttttatctgcaccacctctgaggccaagtgcaaagag 144
Query: 295 catgcggaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaac 354
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 143 catgccgaggcgaggcatcccaagaatgacctctaccagtgcttcccccacctcaagaat 84
Query: 355 tagtaagcagcag 367
|||||||||||||
Sbjct: 83 tagtaagcagcag 71
>gb|CW308818.1|CW308818 104_797_11468871_148_35725_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468871, DNA
sequence
Length = 725
Score = 200 bits (101), Expect = 1e-049
Identities = 125/133 (93%)
Strand = Plus / Minus
Query: 235 cagtgcaagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaa 294
|||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||
Sbjct: 374 cagtgcaagatctgtatgcagacttttatctgcaccacctctgaggccaagtgcaaagag 315
Query: 295 catgcggaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaac 354
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 314 catgccgaggcgaggcatcccaagaatgacctctaccagtgcttcccccacctcaagaat 255
Query: 355 tagtaagcagcag 367
|||||||||||||
Sbjct: 254 tagtaagcagcag 242
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 82 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 23
>gb|CW408142.1|CW408142 fsbb001f101o13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f101o13, DNA
sequence
Length = 766
Score = 200 bits (101), Expect = 1e-049
Identities = 125/133 (93%)
Strand = Plus / Plus
Query: 235 cagtgcaagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaa 294
|||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||
Sbjct: 224 cagtgcaagatctgtatgcagacttttatctgcaccacctctgaggccaagtgcaaagag 283
Query: 295 catgcggaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaac 354
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 284 catgccgaggcgaggcatcccaagaatgacctctaccagtgcttcccccacctcaagaat 343
Query: 355 tagtaagcagcag 367
|||||||||||||
Sbjct: 344 tagtaagcagcag 356
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 516 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 575
>gb|AW923420.1|AW923420 DG1_51_G07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 347
Score = 149 bits (75), Expect = 4e-034
Identities = 87/91 (95%)
Strand = Plus / Plus
Query: 277 gaggccaagtgcaaagaacatgcggaggcgaggcatcccaagaacgacctctaccagtgc 336
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 2 gaggccaagtgcaaagagcatgccgaggcgaggcatcccaagaatgacctctaccagtgc 61
Query: 337 ttcccccacctcaagaactagtaagcagcag 367
||||||||||||||||| |||||||||||||
Sbjct: 62 ttcccccacctcaagaattagtaagcagcag 92
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 252 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 311
>gb|AW671475.1|AW671475 LG1_347_C08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 505
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 62 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 121
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 122 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 181
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 182 aagtatgcatgcaaacattcatgtgtaccac 212
>gb|AW747681.1|AW747681 WS1_75_B10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 482
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 9 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 68
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 69 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 128
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 129 aagtatgcatgcaaacattcatgtgtaccac 159
>gb|AW925081.1|AW925081 WS1_75_B10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 516
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 98 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 157
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 158 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 217
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 218 aagtatgcatgcaaacattcatgtgtaccac 248
>gb|BE593786.1|BE593786 WS1_102_B10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 486
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 77 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 136
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 137 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 196
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 197 aagtatgcatgcaaacattcatgtgtaccac 227
>gb|BE594099.1|BE594099 WS1_102_B10.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 516
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 77 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 136
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 137 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 196
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 197 aagtatgcatgcaaacattcatgtgtaccac 227
>gb|BE598329.1|BE598329 PI1_81_G08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 597
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 119 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 178
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 179 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 238
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 239 aagtatgcatgcaaacattcatgtgtaccac 269
>gb|BE598670.1|BE598670 PI1_81_G08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 485
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 132 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 191
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 192 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 251
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 252 aagtatgcatgcaaacattcatgtgtaccac 282
>gb|BE917631.1|BE917631 OV1_6_B05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 624
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 138 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 197
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 198 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 257
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 258 aagtatgcatgcaaacattcatgtgtaccac 288
>gb|BE917708.1|BE917708 OV1_6_B05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 554
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 138 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 197
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 198 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 257
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 258 aagtatgcatgcaaacattcatgtgtaccac 288
>gb|BF657366.1|BF657366 OV2_24_B07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 482
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 43 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 102
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 103 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 162
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 163 aagtatgcatgcaaacattcatgtgtaccac 193
>gb|BF657438.1|BF657438 OV2_24_B07.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 331
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 79 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 138
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 139 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 198
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 199 aagtatgcatgcaaacattcatgtgtaccac 229
>gb|BG050425.1|BG050425 FM1_69_A05.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 470
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 46 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 105
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 106 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 165
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 166 aagtatgcatgcaaacattcatgtgtaccac 196
>gb|BG050559.1|BG050559 FM1_69_A05.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 395
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 133 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 192
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 193 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 252
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 253 aagtatgcatgcaaacattcatgtgtaccac 283
>gb|BG050745.1|BG050745 FM1_70_A04.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 333
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 133 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 192
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 193 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 252
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 253 aagtatgcatgcaaacattcatgtgtaccac 283
>gb|BG933158.1|BG933158 WS1_29_H08.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 526
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 62 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 121
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 122 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 181
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 182 aagtatgcatgcaaacattcatgtgtaccac 212
>gb|BI351376.1|BI351376 IP1_70_G08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 476
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 132 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 191
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 192 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 251
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 252 aagtatgcatgcaaacattcatgtgtaccac 282
>gb|BI643767.1|BI643767 IP1_56_G11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 598
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 133 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 192
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 193 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 252
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 253 aagtatgcatgcaaacattcatgtgtaccac 283
>gb|CD221158.1|CD221158 CCC1_74_G04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_74_G04_A007 3', mRNA sequence
Length = 567
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 75 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 134
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 135 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 194
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 195 aagtatgcatgcaaacattcatgtgtaccac 225
>gb|CD221265.1|CD221265 CCC1_74_G04.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_74_G04_A007 5', mRNA sequence
Length = 643
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 139 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 198
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 199 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 258
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 259 aagtatgcatgcaaacattcatgtgtaccac 289
>gb|CD430389.1|CD430389 ETH1_18_D03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_18_D03_A002 5', mRNA sequence
Length = 654
Score = 125 bits (63), Expect = 5e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 122 ccatgggcggcggcaacgcccagaagtccaagatggcgcgcgagaggaacgccgagaaga 181
|||||||||||||||||| |||||||||||||||||| |||||| | ||| |||||||
Sbjct: 98 ccatgggcggcggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 157
Query: 182 acaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgca 241
||||||| ||| || |||||||| ||| |||||||||||||||||| |||||||||||
Sbjct: 158 acaaggggtccaaggggagccagcttgagaccaacaagaaggccatgagcatccagtgca 217
Query: 242 agatctgcatgcagaccttcatctgcaccac 272
| | |||||||| || ||||| || |||||
Sbjct: 218 aagtatgcatgcaaacattcatgtgtaccac 248
>gb|CW308817.1|CW308817 104_797_11468871_116_35721_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11468871, DNA
sequence
Length = 666
Score = 123 bits (62), Expect = 2e-026
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 235 cagtgcaagatctgcatgcagaccttcatctgcaccacctccgaggccaagtgcaaagaa 294
|||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||
Sbjct: 577 cagtgcaagatctgtatgcagacttttatctgcaccacctctgaggccaagtgcaaagag 636
Query: 295 catgcggaggcgaggcatcccaagaa 320
||||| ||||||||||||||||||||
Sbjct: 637 catgccgaggcgaggcatcccaagaa 662
>gb|BZ333122.1|BZ333122 hx32h12.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx32h12 5', DNA sequence
Length = 617
Score = 117 bits (59), Expect = 1e-024
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 301 gaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaactagtaa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 gaggcgaggcatcccaagaatgacctctaccagtgcttcccccacctcaagaattagtaa 60
Query: 361 gcagcag 367
|||||||
Sbjct: 61 gcagcag 67
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 227 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 286
>gb|BF506867.1|BF506867 10143P-19a Pooled green leaf and root tissue Sorghum bicolor cDNA
clone 10143P-19, mRNA sequence
Length = 106
Score = 107 bits (54), Expect = 1e-021
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 301 gaggcgaggcatcccaagaacgacctctaccagtgcttcccccacctcaagaactagtaa 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 16 gaggcgaggcatcccaagaatgacctctaccagtgcttcccccacctcaagaattagtaa 75
Query: 361 gc 362
||
Sbjct: 76 gc 77
>gb|BG050487.1|BG050487 FM1_70_A04.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 420
Score = 95.6 bits (48), Expect = 5e-018
Identities = 111/132 (84%)
Strand = Plus / Plus
Query: 141 ccagaagtccaagatggcgcgcgagaggaacgccgagaagaacaagggcggcaaaggcag 200
|||||||||||||||||| |||||| | ||| |||||||||||||| ||| || ||
Sbjct: 3 ccagaagtccaagatggcccgcgagcgcaacttggagaagaacaaggggtccaaggggag 62
Query: 201 ccagctggaggccaacaagaaggccatgaacatccagtgcaagatctgcatgcagacctt 260
|||||| ||| |||||||||||||||||| |||||||||||| | |||||||| || ||
Sbjct: 63 ccagcttgagaccaacaagaaggccatgagcatccagtgcaaagtatgcatgcaaacatt 122
Query: 261 catctgcaccac 272
||| || |||||
Sbjct: 123 catgtgtaccac 134
>gb|AW922493.1|AW922493 DG1_19_A06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 523
Score = 89.7 bits (45), Expect = 3e-016
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 315 caagaacgacctctaccagtgcttcccccacctcaagaactagtaagcagcag 367
|||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 219 caagaatgacctctaccagtgcttcccccacctcaagaattagtaagcagcag 271
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 474 gtgttgccccgtctgattatgtactgtaacccttggctgtcagcctgctgtgctaaaaac 533
|||||||||| ||| | |||||| ||||| |||| |||||||||||| ||||||||||||
Sbjct: 431 gtgttgccccatctaaatatgtaatgtaatccttcgctgtcagcctgttgtgctaaaaac 490
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 199,000
Number of Sequences: 832831
Number of extensions: 199000
Number of successful extensions: 56079
Number of sequences better than 0.5: 62
Number of HSP's better than 0.5 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55913
Number of HSP's gapped (non-prelim): 165
length of query: 614
length of database: 491,359,669
effective HSP length: 19
effective length of query: 595
effective length of database: 475,535,880
effective search space: 282943848600
effective search space used: 282943848600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)