BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2835489.2.1
(885 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE361409.1|BE361409 DG1_71_B07.g1_A002 Dark Grown 1 (DG1... 944 0.0
gb|CF772507.1|CF772507 DSBF1_35_G07.g1_A010 Drought-stresse... 646 0.0
gb|CF429365.1|CF429365 PH1_21_E06.b1_A002 Phosphorous-defic... 482 e-134
gb|CL194445.1|CL194445 104_418_10941640_114_32286_050 Sorgh... 46 0.005
gb|CL194446.1|CL194446 104_418_10941640_116_32290_050 Sorgh... 46 0.005
gb|CW101635.1|CW101635 104_469_11004761_116_34406_071 Sorgh... 46 0.005
>gb|BE361409.1|BE361409 DG1_71_B07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 651
Score = 944 bits (476), Expect = 0.0
Identities = 609/652 (93%), Gaps = 1/652 (0%)
Strand = Plus / Minus
Query: 39 agtatttaacatcacaaagattcaaatgtacccaataaataataaagttatgttgaatca 98
|||||||||||| ||| ||||||||||||||| ||| |||||||||||| | |||||||
Sbjct: 651 agtatttaacat-acagagattcaaatgtaccaaatctataataaagttacgctgaatca 593
Query: 99 ttatcgcttcgaaacatttttagcccatatccaacagggaatagcgggtcatagttagag 158
| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 592 tcatcacttcgaaacattttcagcccatatccaacagggaatagcgggtcatagttagca 533
Query: 159 tctccagcatctataggcaattgatcaacagacttacaccatgtcacaggcaatgtgccc 218
|||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 532 tctccagcatttataggcaattgatcaacagatctataccatgtcacaggcaatgtgccg 473
Query: 219 acaaaatcatgatctccaaagaggcaatcggtaattcccatgccctcacttccaggcagc 278
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||
Sbjct: 472 acaaaatcatgatctccaaagaggcaatcagtaattcccatgccctcagttccaggaagc 413
Query: 279 caggcagcgactagagcttctatcttttccaaaacttgtgactcaataattaatggcctt 338
|||||||| |||||||||||||||| ||||||||| |||||||| ||||| |||||||||
Sbjct: 412 caggcagcaactagagcttctatctgttccaaaacatgtgactcgataatcaatggcctt 353
Query: 339 ccagatataacaatcactagggtagggattttacttgcaacacggatgataaggtcagag 398
||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct: 352 ccagatataacaatcactagggtagggattttactagcaacacaggtgataaggtcagag 293
Query: 399 ccattaaacggaatactaaggtcagttctatctcctgtccattcggcatatggaacctct 458
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 292 ccattaaacgggatactaaggtcagttctatctcctgtccattcagcatatggaacctct 233
Query: 459 ccaacaaccaccaccgcataggaaaaccccccagtttcaatcatagcttcggttgggcat 518
|||||||| || |||||||||||||| || ||||||||||| |||| ||| |||||||||
Sbjct: 232 ccaacaacaacaaccgcataggaaaaaccaccagtttcaataatagtttctgttgggcat 173
Query: 519 ttctcatacacaacttcagtttgcactcccactaattcttgtatggcctccaatatgctc 578
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 172 ttctcgtacacaacttcagtttgcactcccactgattcttgtatggcctccaatatgctc 113
Query: 579 gtaccaagagttatttttccactgtctccatgccatgctatcgtccagccaccacattga 638
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 112 gtaccaggagttatttttccactgtctccatgccatgctatcgtccacccaccacattga 53
Query: 639 tatccaatatcatcagcatgtgttcctgcaaccagtattctttttgcatctt 690
|||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 52 tatccaatatcatcagcatgtgttcctggcaccagtattctttttgcatctt 1
>gb|CF772507.1|CF772507 DSBF1_35_G07.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_35_G07_A010 3', mRNA sequence
Length = 494
Score = 646 bits (326), Expect = 0.0
Identities = 441/478 (92%), Gaps = 1/478 (0%)
Strand = Plus / Minus
Query: 1 attatttcattttaagttccaatagccaataaatacagagtatttaacatcacaaagatt 60
||||||| ||| |||||||||| ||||| |||||||||||||||||||| ||| |||||
Sbjct: 477 attattttgtttgaagttccaatcgccaacaaatacagagtatttaacat-acagagatt 419
Query: 61 caaatgtacccaataaataataaagttatgttgaatcattatcgcttcgaaacattttta 120
|||||||||| ||| |||||||||||| | |||||||| ||| |||||||||||||| |
Sbjct: 418 caaatgtaccaaatctataataaagttacgctgaatcatcatcacttcgaaacattttca 359
Query: 121 gcccatatccaacagggaatagcgggtcatagttagagtctccagcatctataggcaatt 180
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 358 gcccatatccaacagggaatagcgggtcatagttagcatctccagcatttataggcaatt 299
Query: 181 gatcaacagacttacaccatgtcacaggcaatgtgcccacaaaatcatgatctccaaaga 240
|||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 298 gatcaacagatctataccatgtcacaggcaatgtgccgacaaaatcatgatctccaaaga 239
Query: 241 ggcaatcggtaattcccatgccctcacttccaggcagccaggcagcgactagagcttcta 300
||||||| |||||||||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct: 238 ggcaatcagtaattcccatgccctcagttccaggaagccaggcagcaactagagcttcta 179
Query: 301 tcttttccaaaacttgtgactcaataattaatggccttccagatataacaatcactaggg 360
||| ||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 178 tctgttccaaaacatgtgactcgataatcaatggccttccagatataacaatcactaggg 119
Query: 361 tagggattttacttgcaacacggatgataaggtcagagccattaaacggaatactaaggt 420
||||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||
Sbjct: 118 tagggattttactagcaacacaggtgataaggtcagagccattaaacgggatactaaggt 59
Query: 421 cagttctatctcctgtccattcggcatatggaacctctccaacaaccaccaccgcata 478
|||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 58 cagttctatctcctgtccattcagcatatggaacctctccaacaacaacaaccgcata 1
>gb|CF429365.1|CF429365 PH1_21_E06.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_21_E06_A002 3', mRNA sequence
Length = 691
Score = 482 bits (243), Expect = e-134
Identities = 273/283 (96%)
Strand = Plus / Minus
Query: 586 gagttatttttccactgtctccatgccatgctatcgtccagccaccacattgatatccaa 645
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 367 gagttatttttccactgtctccatgccatgctatcgtccacccaccacattgatatccaa 308
Query: 646 tatcatcagcatgtgttcctgcaaccagtattctttttgcatctttggccaatggaagga 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tatcatcagcatgtgttcctgcaaccagtattctttttgcatctttggccaatggaagga 248
Query: 706 atggcttattctgatccttgccatttttcagaagtaccaaagacttgcgaacagcctcac 765
||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 atgacaccttccgatccttgccatttttcagaagtaccaaagacttgcgaacagcctcac 188
Query: 766 gcgctagtaaccgatgttccttacaaccaactatgtccagtagagattggtctgaaaatg 825
|| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 187 gccctagtaatcgatgttccttgcaaccaactatgtccagtagagattggtctgaaaatg 128
Query: 826 gatgctcaaacactccagaaataaacttaaccctcagaattcg 868
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 127 gatgctcaaacactccagaaatgaacttaaccctcagaattcg 85
Score = 385 bits (194), Expect = e-105
Identities = 276/302 (91%), Gaps = 1/302 (0%)
Strand = Plus / Minus
Query: 1 attatttcattttaagttccaatagccaataaatacagagtatttaacatcacaaagatt 60
||||||| ||| |||||||||| ||||| |||||||||||||||||||| ||| |||||
Sbjct: 670 attattttgtttgaagttccaatcgccaacaaatacagagtatttaacat-acagagatt 612
Query: 61 caaatgtacccaataaataataaagttatgttgaatcattatcgcttcgaaacattttta 120
|||||||||| ||| |||||||||||| | |||||||| ||| |||||||||||||| |
Sbjct: 611 caaatgtaccaaatctataataaagttacgctgaatcatcatcacttcgaaacattttca 552
Query: 121 gcccatatccaacagggaatagcgggtcatagttagagtctccagcatctataggcaatt 180
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 551 gcccatatccaacagggaatagcgggtcatagttagcatctccagcatttataggcaatt 492
Query: 181 gatcaacagacttacaccatgtcacaggcaatgtgcccacaaaatcatgatctccaaaga 240
|||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 491 gatcaacagatctataccatgtcacaggcaatgtgccgacaaaatcatgatctccaaaga 432
Query: 241 ggcaatcggtaattcccatgccctcacttccaggcagccaggcagcgactagagcttcta 300
||||||| |||||||||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct: 431 ggcaatcagtaattcccatgccctcagttccaggaagccaggcagcaactagagcttcta 372
Query: 301 tc 302
||
Sbjct: 371 tc 370
>gb|CL194445.1|CL194445 104_418_10941640_114_32286_050 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941640, DNA
sequence
Length = 712
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 635 ttgatatccaatatcatcagcatgtgttcctgcaaccag 673
|||||||||||| | |||||||||| ||||||||||||
Sbjct: 470 ttgatatccaatgttgtcagcatgtgctcctgcaaccag 432
>gb|CL194446.1|CL194446 104_418_10941640_116_32290_050 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10941640, DNA
sequence
Length = 659
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 635 ttgatatccaatatcatcagcatgtgttcctgcaaccag 673
|||||||||||| | |||||||||| ||||||||||||
Sbjct: 444 ttgatatccaatgttgtcagcatgtgctcctgcaaccag 406
>gb|CW101635.1|CW101635 104_469_11004761_116_34406_071 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004761, DNA
sequence
Length = 573
Score = 46.1 bits (23), Expect = 0.005
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 635 ttgatatccaatatcatcagcatgtgttcctgcaaccag 673
|||||||||||| | |||||||||| ||||||||||||
Sbjct: 289 ttgatatccaatgttgtcagcatgtgctcctgcaaccag 327
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 224,449
Number of Sequences: 832831
Number of extensions: 224449
Number of successful extensions: 61358
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61345
Number of HSP's gapped (non-prelim): 10
length of query: 885
length of database: 491,359,669
effective HSP length: 20
effective length of query: 865
effective length of database: 474,703,049
effective search space: 410618137385
effective search space used: 410618137385
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)