BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2823202.2.1
(529 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG559678.1|BG559678 RHIZ2_72_E04.g1_A003 Rhizome2 (RHIZ2... 337 6e-091
gb|CX608155.1|CX608155 ANR1_37_B02.b1_A002 Anaerobic roots ... 335 2e-090
gb|BM328522.1|BM328522 PIC1_30_C03.g1_A002 Pathogen-infecte... 212 2e-053
gb|CW186591.1|CW186591 104_604_11166649_116_36709_005 Sorgh... 131 7e-029
gb|CW290782.1|CW290782 104_770_11413199_148_35760_094 Sorgh... 131 7e-029
gb|CW376050.1|CW376050 fsbb001f053l16k0 Sorghum methylation... 131 7e-029
gb|CW096427.1|CW096427 104_462_11001884_116_34351_080 Sorgh... 121 7e-026
gb|CW256521.1|CW256521 104_721_11226837_148_35142_085 Sorgh... 101 6e-020
gb|CW367611.1|CW367611 fsbb001f041c20k0 Sorghum methylation... 101 6e-020
gb|BE592851.1|BE592851 WS1_91_C01.b1_A002 Water-stressed 1 ... 82 6e-014
gb|BG933181.1|BG933181 WS1_91_C01.g1_A002 Water-stressed 1 ... 82 6e-014
gb|BE358648.1|BE358648 DG1_30_G06.g1_A002 Dark Grown 1 (DG1... 80 2e-013
gb|CW165228.1|CW165228 104_573_11152394_148_36476_007 Sorgh... 78 9e-013
gb|CW354816.1|CW354816 fsbb001f019c24k0 Sorghum methylation... 72 6e-011
gb|CW226510.1|CW226510 104_664_11204925_116_37219_087 Sorgh... 70 2e-010
gb|CX608242.1|CX608242 ANR1_37_B02.g1_A002 Anaerobic roots ... 66 3e-009
gb|CW376049.1|CW376049 fsbb001f053l16f0 Sorghum methylation... 42 0.051
gb|BZ332865.1|BZ332865 hx31b03.b1 WGS-SbicolorF (JM107 adap... 40 0.20
gb|CW186592.1|CW186592 104_604_11166649_148_36710_005 Sorgh... 40 0.20
gb|CW256520.1|CW256520 104_721_11226837_116_35138_085 Sorgh... 40 0.20
gb|CW367610.1|CW367610 fsbb001f041c20f0 Sorghum methylation... 40 0.20
gb|CW385042.1|CW385042 fsbb001f068f20k0 Sorghum methylation... 40 0.20
gb|CX611811.1|CX611811 ANR1_26_H01.g1_A002 Anaerobic roots ... 40 0.20
>gb|BG559678.1|BG559678 RHIZ2_72_E04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 558
Score = 337 bits (170), Expect = 6e-091
Identities = 264/293 (90%), Gaps = 3/293 (1%)
Strand = Plus / Plus
Query: 8 ggccatccagcagaacatcacggaggagtgggctgatgaggagaagaagtgggaggcctg 67
|||||||||||||||||||||||||||||||||| | || |||||| |||||||| | ||
Sbjct: 121 ggccatccagcagaacatcacggaggagtgggctaacgaagagaagcagtgggagacgtg 180
Query: 68 ccgtagccggacaaagacctgtgctgacaagtacgctgcagagagcgcgaagctggcctg 127
|||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||
Sbjct: 181 ccgtagccggacaaagacttgcgctgaaaagtacgctgcagagagcgcgaagctggcatg 240
Query: 128 cacggcgtacgagggtgtcgaccaagactccaccttggaagatgactacttcttcgccgc 187
||||||||||||||||||||| || || |||||||| |||||||||||||||||||| ||
Sbjct: 241 cacggcgtacgagggtgtcgagcaggaatccaccttagaagatgactacttcttcgctgc 300
Query: 188 gctgccggtggttcagaagaggatcgcgcaagggggcgtcaggctggccgcgatcctcaa 247
|||||||||||||||||||||||| || |||||||| ||| |||||||||| || || ||
Sbjct: 301 gctgccggtggttcagaagaggattgctcaagggggtgtccggctggccgcaatactaaa 360
Query: 248 caggatatttggtgggaacagcag--atcaggcttcagagcagttgattgatc 298
|| ||||||||||||||| ||||| ||| | ||||||||||||||||||||
Sbjct: 361 caagatatttggtgggaagagcaggcttca-gattcagagcagttgattgatc 412
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 367 ggcatgatctgccatctgaattagaataa 395
|||||| ||||| ||||||||||||||||
Sbjct: 453 ggcatggtctgcaatctgaattagaataa 481
>gb|CX608155.1|CX608155 ANR1_37_B02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_37_B02_A002 3', mRNA sequence
Length = 633
Score = 335 bits (169), Expect = 2e-090
Identities = 269/300 (89%), Gaps = 3/300 (1%)
Strand = Plus / Plus
Query: 8 ggccatccagcagaacatcacggaggagtgggctgatgaggagaagaagtgggaggcctg 67
|||||||||||||||||||||||||||||||||| | || |||||| |||||||| | ||
Sbjct: 143 ggccatccagcagaacatcacggaggagtgggctaacgaagagaagcagtgggagacgtg 202
Query: 68 ccgtagccggacaaagacctgtgctgacaagtacgctgcagagagcgcgaagctggcctg 127
|||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||
Sbjct: 203 ccgtagccggacaaagacttgcgctgaaaagtacgctgcagagagcgcgaagctggcatg 262
Query: 128 cacggcgtacgagggtgtcgaccaagactccaccttggaagatgactacttcttcgccgc 187
||||||||||||||||||||| || || |||||||| |||||||||||||||||||| ||
Sbjct: 263 cacggcgtacgagggtgtcgagcaggaatccaccttagaagatgactacttcttcgctgc 322
Query: 188 gctgccggtggttcagaagaggatcgcgcaagggggcgtcaggctggccgcgatcctcaa 247
||||||||||||||||||||||| || |||||||| ||| |||||||||| || || ||
Sbjct: 323 actgccggtggttcagaagaggattgctcaagggggtgtccggctggccgcaatactaaa 382
Query: 248 caggatatttggtgggaacagcag--atcaggcttcagagcagttgattgatcgatccat 305
|| ||||||||||||||| ||||| ||| | |||||||||||||||||||| ||||||
Sbjct: 383 caagatatttggtgggaagagcaggcttca-gattcagagcagttgattgatccatccat 441
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 367 ggcatgatctgccatctgaattagaataa 395
|||||| ||||| ||||||||||||||||
Sbjct: 475 ggcatggtctgcaatctgaattagaataa 503
Score = 40.1 bits (20), Expect = 0.20
Identities = 48/55 (87%), Gaps = 3/55 (5%)
Strand = Plus / Plus
Query: 452 tagctcacgaattttattatttcagaatcgaagcacttgtacgtactgtgcaata 506
||||||||||||| |||||| || || ||||||||||||| ||||||||||||
Sbjct: 563 tagctcacgaatt--attattacaaaactgaagcacttgtac-tactgtgcaata 614
>gb|BM328522.1|BM328522 PIC1_30_C03.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 419
Score = 212 bits (107), Expect = 2e-053
Identities = 192/218 (88%), Gaps = 3/218 (1%)
Strand = Plus / Plus
Query: 90 gctgacaagtacgctgcagagagcgcgaagctggcctgcacggcgtacgagggtgtcgac 149
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6 gctgaaaagtacgctgcagagagcgcgaagctggcatgcacggcgtacgagggtgtcgag 65
Query: 150 caagactccaccttggaagatgactacttcttcgccgcgctgccggtggttcagaagagg 209
|| || ||| |||| |||||||| ||||| ||||| || |||||||||||||||||||||
Sbjct: 66 caggaatcccccttagaagatgattactttttcgctgcactgccggtggttcagaagagg 125
Query: 210 atcgcgcaagggggcgtcaggctggccgcgatcctcaacaggatatttggtgggaacagc 269
|| || |||||||| ||| |||||||||| || || |||| ||||||||||||||| |||
Sbjct: 126 attgctcaagggggtgtccggctggccgcaatactaaacaagatatttggtgggaagagc 185
Query: 270 ag--atcaggcttcagagcagttgattgatcgatccat 305
|| ||| | |||||||||||||||||||| ||||||
Sbjct: 186 aggcttca-gattcagagcagttgattgatccatccat 222
Score = 40.1 bits (20), Expect = 0.20
Identities = 48/55 (87%), Gaps = 3/55 (5%)
Strand = Plus / Plus
Query: 452 tagctcacgaattttattatttcagaatcgaagcacttgtacgtactgtgcaata 506
||||||||||||| |||||| || || ||||||||||||| ||||||||||||
Sbjct: 344 tagctcacgaatt--attattacaaaactgaagcacttgtac-tactgtgcaata 395
>gb|CW186591.1|CW186591 104_604_11166649_116_36709_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166649, DNA
sequence
Length = 679
Score = 131 bits (66), Expect = 7e-029
Identities = 124/141 (87%), Gaps = 3/141 (2%)
Strand = Plus / Plus
Query: 167 agatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggcgt 226
|||||||||||||||||| || ||||||||||||||||||||||| || |||||||| ||
Sbjct: 55 agatgactacttcttcgctgcactgccggtggttcagaagaggattgctcaagggggtgt 114
Query: 227 caggctggccgcgatcctcaacaggatatttggtgggaacagcag--atcaggcttcaga 284
| |||||||||| || || |||| ||||||||||||||| ||||| ||| | ||||||
Sbjct: 115 ccggctggccgcaatactaaacaagatatttggtgggaagagcaggcttca-gattcaga 173
Query: 285 gcagttgattgatcgatccat 305
|||||||||||||| ||||||
Sbjct: 174 gcagttgattgatccatccat 194
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 367 ggcatgatctgccatctgaattagaataa 395
|||||| ||||| ||||||||||||||||
Sbjct: 228 ggcatggtctgcaatctgaattagaataa 256
Score = 40.1 bits (20), Expect = 0.20
Identities = 48/55 (87%), Gaps = 3/55 (5%)
Strand = Plus / Plus
Query: 452 tagctcacgaattttattatttcagaatcgaagcacttgtacgtactgtgcaata 506
||||||||||||| |||||| || || ||||||||||||| ||||||||||||
Sbjct: 316 tagctcacgaatt--attattacaaaactgaagcacttgtac-tactgtgcaata 367
>gb|CW290782.1|CW290782 104_770_11413199_148_35760_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11413199, DNA
sequence
Length = 635
Score = 131 bits (66), Expect = 7e-029
Identities = 124/141 (87%), Gaps = 3/141 (2%)
Strand = Plus / Plus
Query: 167 agatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggcgt 226
|||||||||||||||||| || ||||||||||||||||||||||| || |||||||| ||
Sbjct: 79 agatgactacttcttcgctgcactgccggtggttcagaagaggattgctcaagggggtgt 138
Query: 227 caggctggccgcgatcctcaacaggatatttggtgggaacagcag--atcaggcttcaga 284
| |||||||||| || || |||| ||||||||||||||| ||||| ||| | ||||||
Sbjct: 139 ccggctggccgcaatactaaacaagatatttggtgggaagagcaggcttca-gattcaga 197
Query: 285 gcagttgattgatcgatccat 305
|||||||||||||| ||||||
Sbjct: 198 gcagttgattgatccatccat 218
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 367 ggcatgatctgccatctgaattagaataa 395
|||||| ||||| ||||||||||||||||
Sbjct: 252 ggcatggtctgcaatctgaattagaataa 280
Score = 40.1 bits (20), Expect = 0.20
Identities = 48/55 (87%), Gaps = 3/55 (5%)
Strand = Plus / Plus
Query: 452 tagctcacgaattttattatttcagaatcgaagcacttgtacgtactgtgcaata 506
||||||||||||| |||||| || || ||||||||||||| ||||||||||||
Sbjct: 340 tagctcacgaatt--attattacaaaactgaagcacttgtac-tactgtgcaata 391
>gb|CW376050.1|CW376050 fsbb001f053l16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f053l16, DNA
sequence
Length = 746
Score = 131 bits (66), Expect = 7e-029
Identities = 124/141 (87%), Gaps = 3/141 (2%)
Strand = Plus / Plus
Query: 167 agatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggcgt 226
|||||||||||||||||| || ||||||||||||||||||||||| || |||||||| ||
Sbjct: 316 agatgactacttcttcgctgcactgccggtggttcagaagaggattgctcaagggggtgt 375
Query: 227 caggctggccgcgatcctcaacaggatatttggtgggaacagcag--atcaggcttcaga 284
| |||||||||| || || |||| ||||||||||||||| ||||| ||| | ||||||
Sbjct: 376 ccggctggccgcaatactaaacaagatatttggtgggaagagcaggcttca-gattcaga 434
Query: 285 gcagttgattgatcgatccat 305
|||||||||||||| ||||||
Sbjct: 435 gcagttgattgatccatccat 455
Score = 101 bits (51), Expect = 6e-020
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 98 gtacgctgcagagagcgcgaagctggcctgcacggcgtacgagggtgtcgaccaagactc 157
||||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||
Sbjct: 97 gtacgctgcagagagcgcgaagctggcatgcacggcgtacgagggtgtcgagcaggaatc 156
Query: 158 caccttggaag 168
|||||| ||||
Sbjct: 157 caccttagaag 167
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 367 ggcatgatctgccatctgaattagaataa 395
|||||| ||||| ||||||||||||||||
Sbjct: 489 ggcatggtctgcaatctgaattagaataa 517
Score = 40.1 bits (20), Expect = 0.20
Identities = 48/55 (87%), Gaps = 3/55 (5%)
Strand = Plus / Plus
Query: 452 tagctcacgaattttattatttcagaatcgaagcacttgtacgtactgtgcaata 506
||||||||||||| |||||| || || ||||||||||||| ||||||||||||
Sbjct: 577 tagctcacgaatt--attattacaaaactgaagcacttgtac-tactgtgcaata 628
>gb|CW096427.1|CW096427 104_462_11001884_116_34351_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11001884, DNA
sequence
Length = 311
Score = 121 bits (61), Expect = 7e-026
Identities = 94/105 (89%)
Strand = Plus / Minus
Query: 167 agatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggcgt 226
|||||||||||||||||| || ||||||||||||||||||||||| || |||||||| ||
Sbjct: 117 agatgactacttcttcgctgcactgccggtggttcagaagaggattgctcaagggggtgt 58
Query: 227 caggctggccgcgatcctcaacaggatatttggtgggaacagcag 271
| |||||||||| || || |||| ||||||||||||||| |||||
Sbjct: 57 ccggctggccgcaatactaaacaagatatttggtgggaagagcag 13
Score = 54.0 bits (27), Expect = 1e-005
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 126 tgcacggcgtacgagggtgtcgaccaagactccaccttggaag 168
||||||||||||||||||||||| || || |||||||| ||||
Sbjct: 308 tgcacggcgtacgagggtgtcgagcaggaatccaccttagaag 266
>gb|CW256521.1|CW256521 104_721_11226837_148_35142_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226837, DNA
sequence
Length = 622
Score = 101 bits (51), Expect = 6e-020
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 98 gtacgctgcagagagcgcgaagctggcctgcacggcgtacgagggtgtcgaccaagactc 157
||||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||
Sbjct: 391 gtacgctgcagagagcgcgaagctggcatgcacggcgtacgagggtgtcgagcaggaatc 450
Query: 158 caccttggaag 168
|||||| ||||
Sbjct: 451 caccttagaag 461
Score = 71.9 bits (36), Expect = 6e-011
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 29 ggaggagtgggctgatgaggagaagaagtgggaggcctgccgtagccggacaaagacctg 88
||||||||||||| | || |||||| |||||||| | |||||||||||||||||||| ||
Sbjct: 224 ggaggagtgggctaacgaagagaagcagtgggagacgtgccgtagccggacaaagacttg 283
Query: 89 tgctgacaagta 100
||||| |||||
Sbjct: 284 cgctgaaaagta 295
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 ggccatccagcagaacatcacgg 30
|||||||||||||||||||||||
Sbjct: 90 ggccatccagcagaacatcacgg 112
>gb|CW367611.1|CW367611 fsbb001f041c20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f041c20, DNA
sequence
Length = 706
Score = 101 bits (51), Expect = 6e-020
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 98 gtacgctgcagagagcgcgaagctggcctgcacggcgtacgagggtgtcgaccaagactc 157
||||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||
Sbjct: 463 gtacgctgcagagagcgcgaagctggcatgcacggcgtacgagggtgtcgagcaggaatc 522
Query: 158 caccttggaag 168
|||||| ||||
Sbjct: 523 caccttagaag 533
Score = 71.9 bits (36), Expect = 6e-011
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 29 ggaggagtgggctgatgaggagaagaagtgggaggcctgccgtagccggacaaagacctg 88
||||||||||||| | || |||||| |||||||| | |||||||||||||||||||| ||
Sbjct: 296 ggaggagtgggctaacgaagagaagcagtgggagacgtgccgtagccggacaaagacttg 355
Query: 89 tgctgacaagta 100
||||| |||||
Sbjct: 356 cgctgaaaagta 367
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 ggccatccagcagaacatcacgg 30
|||||||||||||||||||||||
Sbjct: 162 ggccatccagcagaacatcacgg 184
>gb|BE592851.1|BE592851 WS1_91_C01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 397
Score = 81.8 bits (41), Expect = 6e-014
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 161 cttggaagatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagg 220
||||| |||||| ||||||||| | ||||||||||| |||| |||||| || ||||||||
Sbjct: 189 cttgggagatgaatacttcttctctgcgctgccggttgttcggaagagaatagcgcaagg 248
Query: 221 gggcgtcaggctggccgcgatcctcaacaggat 253
|| |||||||| || || ||||||||||||||
Sbjct: 249 aggggtcaggctcgctgcaatcctcaacaggat 281
>gb|BG933181.1|BG933181 WS1_91_C01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 411
Score = 81.8 bits (41), Expect = 6e-014
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 161 cttggaagatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagg 220
||||| |||||| ||||||||| | ||||||||||| |||| |||||| || ||||||||
Sbjct: 189 cttgggagatgaatacttcttctctgcgctgccggttgttcggaagagaatagcgcaagg 248
Query: 221 gggcgtcaggctggccgcgatcctcaacaggat 253
|| |||||||| || || ||||||||||||||
Sbjct: 249 aggggtcaggctcgctgcaatcctcaacaggat 281
>gb|BE358648.1|BE358648 DG1_30_G06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 198
Score = 79.8 bits (40), Expect = 2e-013
Identities = 101/119 (84%), Gaps = 3/119 (2%)
Strand = Plus / Plus
Query: 189 ctgccggtggttcagaagaggatcgcgcaagggggcgtcaggctggccgcgatcctcaac 248
||||||||||||||||||||||| || |||||||| ||| ||||||| | || || |||
Sbjct: 3 ctgccggtggttcagaagaggattgctcaagggggtgtccggctggcttctatactaaac 62
Query: 249 aggatatttggtgggaacagcag--atcaggcttcagagcagttgattgatcgatccat 305
| |||||||||||| || ||||| ||| | |||||||||||||||||||| ||||||
Sbjct: 63 aagatatttggtggaaagagcaggcttca-gattcagagcagttgattgatccatccat 120
>gb|CW165228.1|CW165228 104_573_11152394_148_36476_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152394, DNA
sequence
Length = 688
Score = 77.8 bits (39), Expect = 9e-013
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 167 agatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggcgt 226
|||||| ||||||||| | ||||||||||| |||| |||||| || |||||||| || ||
Sbjct: 274 agatgaatacttcttctctgcgctgccggttgttcggaagagaatagcgcaaggaggggt 215
Query: 227 caggctggccgcgatcctcaacaggat 253
|||||| || || ||||||||||||||
Sbjct: 214 caggctcgctgcaatcctcaacaggat 188
>gb|CW354816.1|CW354816 fsbb001f019c24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f019c24, DNA
sequence
Length = 644
Score = 71.9 bits (36), Expect = 6e-011
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 29 ggaggagtgggctgatgaggagaagaagtgggaggcctgccgtagccggacaaagacctg 88
||||||||||||| | || |||||| |||||||| | |||||||||||||||||||| ||
Sbjct: 87 ggaggagtgggctaacgaagagaagcagtgggagacgtgccgtagccggacaaagacttg 28
Query: 89 tgctgacaagta 100
||||| |||||
Sbjct: 27 cgctgaaaagta 16
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 8 ggccatccagcagaacatcacgg 30
|||||||||||||||||||||||
Sbjct: 221 ggccatccagcagaacatcacgg 199
>gb|CW226510.1|CW226510 104_664_11204925_116_37219_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204925, DNA
sequence
Length = 655
Score = 69.9 bits (35), Expect = 2e-010
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 167 agatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggcgt 226
|||||| ||||||||| | ||||||||||| |||| |||||| || |||||||| || ||
Sbjct: 83 agatgaatacttcttctctgcgctgccggttgttcggaagagaatagcgcaaggaggggt 24
Query: 227 caggctggccgcgatcctcaaca 249
|||||| || || ||||||||||
Sbjct: 23 caggctcgctgcaatcctcaaca 1
>gb|CX608242.1|CX608242 ANR1_37_B02.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_37_B02_A002 5', mRNA sequence
Length = 684
Score = 65.9 bits (33), Expect = 3e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 8 ggccatccagcagaacatcacggaggagtgggc 40
|||||||||||||||||||||||||||||||||
Sbjct: 652 ggccatccagcagaacatcacggaggagtgggc 684
>gb|CW376049.1|CW376049 fsbb001f053l16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f053l16, DNA
sequence
Length = 712
Score = 42.1 bits (21), Expect = 0.051
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 367 ggcatgatctgccatctgaattagaataa 395
|||||| ||||| ||||||||||||||||
Sbjct: 675 ggcatggtctgcaatctgaattagaataa 647
Score = 40.1 bits (20), Expect = 0.20
Identities = 48/55 (87%), Gaps = 3/55 (5%)
Strand = Plus / Minus
Query: 452 tagctcacgaattttattatttcagaatcgaagcacttgtacgtactgtgcaata 506
||||||||||| |||||||| || || ||||||||||||| ||||||||||||
Sbjct: 587 tagctcacgaa--ttattattacaaaactgaagcacttgtac-tactgtgcaata 536
>gb|BZ332865.1|BZ332865 hx31b03.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx31b03 5', DNA sequence
Length = 359
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 175 acttcttcgccgcgctgccg 194
||||||||||||||||||||
Sbjct: 66 acttcttcgccgcgctgccg 85
>gb|CW186592.1|CW186592 104_604_11166649_148_36710_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166649, DNA
sequence
Length = 707
Score = 40.1 bits (20), Expect = 0.20
Identities = 48/55 (87%), Gaps = 3/55 (5%)
Strand = Plus / Minus
Query: 452 tagctcacgaattttattatttcagaatcgaagcacttgtacgtactgtgcaata 506
||||||||||| |||||||| || || ||||||||||||| ||||||||||||
Sbjct: 585 tagctcacgaa--ttattattacaaaactgaagcacttgtac-tactgtgcaata 534
>gb|CW256520.1|CW256520 104_721_11226837_116_35138_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226837, DNA
sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.20
Identities = 48/55 (87%), Gaps = 3/55 (5%)
Strand = Plus / Minus
Query: 452 tagctcacgaattttattatttcagaatcgaagcacttgtacgtactgtgcaata 506
||||||||||| |||||||| || || ||||||||||||| ||||||||||||
Sbjct: 615 tagctcacgaa--ttattattacaaaactgaagcacttgtac-tactgtgcaata 564
>gb|CW367610.1|CW367610 fsbb001f041c20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f041c20, DNA
sequence
Length = 711
Score = 40.1 bits (20), Expect = 0.20
Identities = 48/55 (87%), Gaps = 3/55 (5%)
Strand = Plus / Minus
Query: 452 tagctcacgaattttattatttcagaatcgaagcacttgtacgtactgtgcaata 506
||||||||||| |||||||| || || ||||||||||||| ||||||||||||
Sbjct: 640 tagctcacgaa--ttattattacaaaactgaagcacttgtac-tactgtgcaata 589
>gb|CW385042.1|CW385042 fsbb001f068f20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f068f20, DNA
sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.20
Identities = 48/55 (87%), Gaps = 3/55 (5%)
Strand = Plus / Plus
Query: 452 tagctcacgaattttattatttcagaatcgaagcacttgtacgtactgtgcaata 506
||||||||||||| |||||| || || ||||||||||||| ||||||||||||
Sbjct: 91 tagctcacgaatt--attattacaaaactgaagcacttgtac-tactgtgcaata 142
>gb|CX611811.1|CX611811 ANR1_26_H01.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_26_H01_A002 5', mRNA sequence
Length = 808
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 175 acttcttcgccgcgctgccg 194
||||||||||||||||||||
Sbjct: 552 acttcttcgccgcgctgccg 571
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 135,647
Number of Sequences: 832831
Number of extensions: 135647
Number of successful extensions: 39741
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 39664
Number of HSP's gapped (non-prelim): 63
length of query: 529
length of database: 491,359,669
effective HSP length: 19
effective length of query: 510
effective length of database: 475,535,880
effective search space: 242523298800
effective search space used: 242523298800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)