BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763196.2.1
(2766 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD205389.1|CD205389 HS1_13_E09.g1_A012 Heat-shocked seed... 872 0.0
gb|CW065419.1|CW065419 104_312_10523137_114_30128 Sorghum m... 569 e-160
gb|CW338273.1|CW338273 104_838_11484656_116_36129_024 Sorgh... 509 e-142
gb|CW338274.1|CW338274 104_838_11484656_148_36128_024 Sorgh... 509 e-142
gb|BZ691788.1|BZ691788 SP__Ba0012H16.r SP__Ba Sorghum propi... 458 e-126
gb|CW785524.1|CW785524 SP__Ba0012H16.r SP__Ba Sorghum propi... 458 e-126
gb|BZ693321.1|BZ693321 SP__Ba0032N02.r SP__Ba Sorghum propi... 400 e-109
gb|CW787281.1|CW787281 SP__Ba0032N02.r SP__Ba Sorghum propi... 400 e-109
gb|CL172924.1|CL172924 104_376_10890520_116_31795_040 Sorgh... 361 2e-097
gb|CW065420.1|CW065420 104_312_10523137_115_30130 Sorghum m... 351 2e-094
gb|CL172925.1|CL172925 104_376_10890520_148_31794_040 Sorgh... 236 9e-060
gb|CW290762.1|CW290762 104_770_11413189_116_35761_061 Sorgh... 218 2e-054
gb|CW353023.1|CW353023 fsbb001f015j07k0 Sorghum methylation... 80 1e-012
gb|CW501258.1|CW501258 fsbb001f296p21f0 Sorghum methylation... 78 5e-012
gb|BE362824.1|BE362824 DG1_89_C06.g2_A002 Dark Grown 1 (DG1... 72 3e-010
gb|CX607333.1|CX607333 ANR1_8_A08.b1_A002 Anaerobic roots S... 72 3e-010
gb|CD205281.1|CD205281 HS1_13_E09.b1_A012 Heat-shocked seed... 68 5e-009
gb|CW238660.1|CW238660 104_695_11216850_116_37418_069 Sorgh... 66 2e-008
gb|CW438524.1|CW438524 fsbb001f156d07k0 Sorghum methylation... 66 2e-008
gb|CL173256.1|CL173256 104_376_10890746_148_31794_266 Sorgh... 64 7e-008
gb|CL186444.1|CL186444 104_401_10900209_114_32408_043 Sorgh... 64 7e-008
gb|CW092776.1|CW092776 104_455_10999375_114_33047_024 Sorgh... 64 7e-008
gb|CW106786.1|CW106786 104_476_11096183_116_34466_086 Sorgh... 64 7e-008
gb|CW261092.1|CW261092 104_728_11229321_116_35174_045 Sorgh... 64 7e-008
gb|CW269904.1|CW269904 104_741_11402092_116_35325_012 Sorgh... 64 7e-008
gb|CW284177.1|CW284177 104_760_11409636_116_35484_034 Sorgh... 64 7e-008
gb|CW284178.1|CW284178 104_760_11409636_148_35488_034 Sorgh... 64 7e-008
gb|CW298502.1|CW298502 104_781_11462613_116_35658_093 Sorgh... 64 7e-008
gb|CW298503.1|CW298503 104_781_11462613_148_35654_093 Sorgh... 64 7e-008
gb|CW388204.1|CW388204 fsbb001f072n22f0 Sorghum methylation... 64 7e-008
gb|CW388205.1|CW388205 fsbb001f072n22k0 Sorghum methylation... 64 7e-008
gb|CW394723.1|CW394723 fsbb001f082h08f0 Sorghum methylation... 64 7e-008
gb|CX607332.1|CX607332 ANR1_8_A07.b1_A002 Anaerobic roots S... 64 7e-008
gb|CX614101.1|CX614101 GABR1_12_C05.b1_A002 GA- or brassino... 62 3e-007
gb|CW077087.1|CW077087 104_377_10891159_116_31793_295 Sorgh... 60 1e-006
gb|CW146606.1|CW146606 104_539_11139082_148_34985_037 Sorgh... 60 1e-006
gb|CW157004.1|CW157004 104_560_11146994_116_36382_011 Sorgh... 60 1e-006
gb|CW157005.1|CW157005 104_560_11146994_148_36381_011 Sorgh... 60 1e-006
gb|CW405377.1|CW405377 fsbb001f097o11f0 Sorghum methylation... 60 1e-006
gb|BE597884.1|BE597884 PI1_66_F03.g1_A002 Pathogen induced ... 60 1e-006
gb|BE598651.1|BE598651 PI1_84_A03.g1_A002 Pathogen induced ... 60 1e-006
gb|BE598982.1|BE598982 PI1_84_A03.b1_A002 Pathogen induced ... 60 1e-006
gb|BM324586.1|BM324586 PIC1_33_A11.b1_A002 Pathogen-infecte... 60 1e-006
gb|BM326396.1|BM326396 PIC1_56_E08.b1_A002 Pathogen-infecte... 60 1e-006
gb|BM326570.1|BM326570 PIC1_58_F12.b1_A002 Pathogen-infecte... 60 1e-006
gb|BM329073.1|BM329073 PIC1_33_A11.g1_A002 Pathogen-infecte... 60 1e-006
gb|CX622440.1|CX622440 GABR1_64_A08.b2_A002 GA- or brassino... 60 1e-006
gb|AF527808.1| Sorghum bicolor clone BAC SBTXS_0040L6 php20... 60 1e-006
gb|CW213213.1|CW213213 104_644_11191427_116_37030_038 Sorgh... 58 5e-006
gb|CW452241.1|CW452241 fsbb001f192k21k0 Sorghum methylation... 58 5e-006
gb|CX618202.1|CX618202 GABR1_38_F07.b1_A002 GA- or brassino... 58 5e-006
gb|CL164146.1|CL164146 104_358_10807706_114_31814_074 Sorgh... 56 2e-005
gb|CL167935.1|CL167935 104_365_10810447_114_31804_127 Sorgh... 56 2e-005
gb|CW098157.1|CW098157 104_464_11002855_148_34364_022 Sorgh... 56 2e-005
gb|CW132393.1|CW132393 104_515_11116188_116_34797_036 Sorgh... 56 2e-005
gb|CW433358.1|CW433358 fsbb001f148i16k0 Sorghum methylation... 56 2e-005
gb|CX616654.1|CX616654 GABR1_29_D11.b1_A002 GA- or brassino... 56 2e-005
gb|CW029585.1|CW029585 104_257_10499759_114_30401 Sorghum m... 54 7e-005
gb|CW266310.1|CW266310 104_736_11232356_148_35286_080 Sorgh... 54 7e-005
gb|CW424560.1|CW424560 fsbb001f134p08f0 Sorghum methylation... 54 7e-005
gb|CW429915.1|CW429915 fsbb001f143g11k0 Sorghum methylation... 54 7e-005
gb|BH245245.1|BH245245 pSB0077 S. bicolor BTx623 PstI-diges... 52 3e-004
gb|CL175817.1|CL175817 104_381_10892708_148_31764_308 Sorgh... 52 3e-004
gb|CW033929.1|CW033929 104_263_10502248_114_30359 Sorghum m... 52 3e-004
gb|CW227193.1|CW227193 104_665_11205285_116_37223_087 Sorgh... 52 3e-004
gb|CW233968.1|CW233968 104_687_11213729_148_37378_071 Sorgh... 52 3e-004
gb|CW239979.1|CW239979 104_698_11217956_148_37523_072 Sorgh... 52 3e-004
gb|CW256245.1|CW256245 104_721_11226684_116_35139_044 Sorgh... 52 3e-004
gb|CW273782.1|CW273782 104_746_11404084_116_35363_008 Sorgh... 52 3e-004
gb|CW347258.1|CW347258 fsbb001f007b17f0 Sorghum methylation... 52 3e-004
gb|CW399029.1|CW399029 fsbb001f088l14f0 Sorghum methylation... 52 3e-004
gb|CW452726.1|CW452726 fsbb001f193g15k0 Sorghum methylation... 52 3e-004
gb|CL185426.1|CL185426 104_399_10899519_116_32394_056 Sorgh... 50 0.001
gb|CW039773.1|CW039773 104_272_10505688_115_30390 Sorghum m... 50 0.001
gb|CW145880.1|CW145880 104_538_11138697_116_34976_037 Sorgh... 50 0.001
gb|CW338336.1|CW338336 104_838_11484691_116_36122_070 Sorgh... 50 0.001
gb|CW338337.1|CW338337 104_838_11484691_148_36123_070 Sorgh... 50 0.001
gb|CW338338.1|CW338338 104_838_11484692_116_36125_070 Sorgh... 50 0.001
gb|CW338339.1|CW338339 104_838_11484692_148_36124_070 Sorgh... 50 0.001
gb|CX615543.1|CX615543 GABR1_20_F06.g1_A002 GA- or brassino... 50 0.001
gb|CL187114.1|CL187114 104_402_10900659_114_32571_008 Sorgh... 48 0.004
gb|CL187115.1|CL187115 104_402_10900659_116_32434_008 Sorgh... 48 0.004
gb|CW044079.1|CW044079 104_279_10508749_114_30275 Sorghum m... 48 0.004
gb|CW048079.1|CW048079 104_286_10513078_114_30214 Sorghum m... 48 0.004
gb|CW056639.1|CW056639 104_298_10517790_114_30156 Sorghum m... 48 0.004
gb|CW074359.1|CW074359 104_346_10803333_116_31376_309 Sorgh... 48 0.004
gb|CW079624.1|CW079624 104_402_10900659_114_32430_008 Sorgh... 48 0.004
gb|CW160877.1|CW160877 104_567_11150113_148_36416_005 Sorgh... 48 0.004
gb|CW165973.1|CW165973 104_574_11152796_116_36481_072 Sorgh... 48 0.004
gb|CW184506.1|CW184506 104_600_11165186_148_36683_001 Sorgh... 48 0.004
gb|CW316363.1|CW316363 104_807_11472855_116_35842_052 Sorgh... 48 0.004
gb|CW349900.1|CW349900 fsbb001f010p09f0 Sorghum methylation... 48 0.004
gb|CW424814.1|CW424814 fsbb001f135f07k0 Sorghum methylation... 48 0.004
gb|CW451771.1|CW451771 fsbb001f192a01f0 Sorghum methylation... 48 0.004
gb|CW498819.1|CW498819 fsbb001f293e01k0 Sorghum methylation... 48 0.004
gb|CX611727.1|CX611727 ANR1_26_H02.b1_A002 Anaerobic roots ... 48 0.004
gb|CW079261.1|CW079261 104_399_10899637_114_32392_051 Sorgh... 46 0.017
gb|CW079262.1|CW079262 104_399_10899637_116_32396_051 Sorgh... 46 0.017
gb|CW126671.1|CW126671 104_507_11113020_148_34729_040 Sorgh... 46 0.017
gb|CW185503.1|CW185503 104_603_11166093_116_36701_093 Sorgh... 46 0.017
gb|CW219969.1|CW219969 104_654_11197096_148_37151_058 Sorgh... 46 0.017
gb|CW499101.1|CW499101 fsbb001f293l04k0 Sorghum methylation... 46 0.017
gb|CW501259.1|CW501259 fsbb001f296p21k0 Sorghum methylation... 46 0.017
gb|CX609339.1|CX609339 ANR1_12_C08.b1_A002 Anaerobic roots ... 46 0.017
gb|CW110064.1|CW110064 104_482_11103479_116_34509_086 Sorgh... 44 0.069
gb|CW227194.1|CW227194 104_665_11205285_148_37224_087 Sorgh... 44 0.069
gb|CW273783.1|CW273783 104_746_11404084_148_35367_008 Sorgh... 44 0.069
gb|CW277111.1|CW277111 104_751_11405847_116_35411_064 Sorgh... 44 0.069
gb|CW277112.1|CW277112 104_751_11405847_148_35415_064 Sorgh... 44 0.069
gb|CW316170.1|CW316170 104_807_11472752_148_35847_024 Sorgh... 44 0.069
gb|CW322650.1|CW322650 104_816_11476210_148_35955_039 Sorgh... 44 0.069
gb|CW378104.1|CW378104 fsbb001f056l14k0 Sorghum methylation... 44 0.069
gb|CW390531.1|CW390531 fsbb001f076d16f0 Sorghum methylation... 44 0.069
gb|CW421336.1|CW421336 fsbb001f130b18k0 Sorghum methylation... 44 0.069
gb|CW458925.1|CW458925 fsbb001f205g23k0 Sorghum methylation... 44 0.069
gb|CW463469.1|CW463469 fsbb001f212b17k0 Sorghum methylation... 44 0.069
gb|CW495590.1|CW495590 fsbb001f287g20k0 Sorghum methylation... 44 0.069
gb|CL697158.2|CL697158 SP__Ba0007E11.r SP__Ba Sorghum propi... 44 0.069
gb|BM318213.1|BM318213 PI1_79_G12.g9_A002 Pathogen induced ... 44 0.069
gb|CX615593.1|CX615593 GABR1_21_C11.b1_A002 GA- or brassino... 44 0.069
gb|CL187877.1|CL187877 104_403_10901201_114_32459_065 Sorgh... 42 0.27
gb|CW050796.1|CW050796 104_290_10514857_115_30205 Sorghum m... 42 0.27
gb|CW098156.1|CW098156 104_464_11002855_116_34360_022 Sorgh... 42 0.27
gb|CW118212.1|CW118212 104_494_11108081_116_34682_069 Sorgh... 42 0.27
gb|CW118978.1|CW118978 104_495_11108504_116_34625_020 Sorgh... 42 0.27
gb|CW118979.1|CW118979 104_495_11108504_148_34699_020 Sorgh... 42 0.27
gb|CW130522.1|CW130522 104_513_11115162_148_34779_079 Sorgh... 42 0.27
gb|CW168379.1|CW168379 104_578_11154110_148_36601_063 Sorgh... 42 0.27
gb|CW215100.1|CW215100 104_647_11194365_148_37166_091 Sorgh... 42 0.27
gb|CW266419.1|CW266419 104_736_11232412_116_35284_014 Sorgh... 42 0.27
gb|CW266420.1|CW266420 104_736_11232412_148_35288_014 Sorgh... 42 0.27
gb|CW272506.1|CW272506 104_744_11403449_116_36225_067 Sorgh... 42 0.27
gb|CW318163.1|CW318163 104_810_11473804_116_35874_012 Sorgh... 42 0.27
gb|CW328652.1|CW328652 104_824_11479422_116_35990_017 Sorgh... 42 0.27
gb|CW396068.1|CW396068 fsbb001f084f20k0 Sorghum methylation... 42 0.27
gb|CW427059.1|CW427059 fsbb001f138n11k0 Sorghum methylation... 42 0.27
gb|CW433357.1|CW433357 fsbb001f148i16f0 Sorghum methylation... 42 0.27
gb|CW474132.1|CW474132 fsbb001f229n06f0 Sorghum methylation... 42 0.27
gb|CW481006.1|CW481006 fsbb001f240f18k0 Sorghum methylation... 42 0.27
gb|CW489649.1|CW489649 fsbb001f274l04k0 Sorghum methylation... 42 0.27
gb|CW490596.1|CW490596 fsbb001f280b19f0 Sorghum methylation... 42 0.27
gb|AW677539.1|AW677539 DG1_8_H04.b1_A002 Dark Grown 1 (DG1)... 42 0.27
gb|BM322810.1|BM322810 PIC1_10_E04.b1_A002 Pathogen-infecte... 42 0.27
gb|CD229545.1|CD229545 CCC1_16_G03.g1_A007 Callus culture/c... 42 0.27
gb|CF431045.1|CF431045 NIT1_4_C06.g1_A002 Nitrogen-deficien... 42 0.27
gb|CX609421.1|CX609421 ANR1_12_C08.g1_A002 Anaerobic roots ... 42 0.27
gb|CX616033.1|CX616033 GABR1_25_A09.g1_A002 GA- or brassino... 42 0.27
>gb|CD205389.1|CD205389 HS1_13_E09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_13_E09_A012 5', mRNA sequence
Length = 668
Score = 872 bits (440), Expect = 0.0
Identities = 607/660 (91%), Gaps = 12/660 (1%)
Strand = Plus / Minus
Query: 2071 aaattcaccccattccactgtcccgacctccagtacgtaacgttgccatctttccagatg 2130
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 668 aaattcaccccattccactgtcccgacctccagtaggtaacattgccgtctttccagatg 609
Query: 2131 taggcctgaccggagttgcccgggtcgaggccgagcgcgtatcgccccggcgaagggtcc 2190
||||||||| || ||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct: 608 taggcctgagcg---ttg---gggtcgaggccgagcgcgtaccgccccggcgaggggtcc 555
Query: 2191 gtctcgctggcccaggacgtgaacagcatccgctccttagggcccctccctggcgcctgc 2250
|||||||||||||||||||||||||||||||||||||| || |||||||| |||| ||||
Sbjct: 554 gtctcgctggcccaggacgtgaacagcatccgctccttgggacccctcccgggcgtctgc 495
Query: 2251 aaggtgatgcgcatcccggacaggatggtgtccgtcgggtgccagaagctgtcccagagc 2310
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 494 aaggtgatgcgcatcccggacaggatggtgtccgtcgggtgcgagaagctgtcccagagc 435
Query: 2311 accccatc---ctcgctgcgcacctcgaggctgccagtgtcctggagcaccgccgagtag 2367
|||||||| ||||||||||||||||||| |||| |||| ||||||||||||||||||
Sbjct: 434 accccatcatcctcgctgcgcacctcgaggttgccgctgtcatggagcaccgccgagtag 375
Query: 2368 ccgccccgcgggcccgcgcgcgaggtggtgttggaggaccagagcagcggcgcgtcggcg 2427
||||||| ||| ||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 374 ccgccccttggggccgcgcgcgaggtggcgttggaggaccagagcagcggtgcgtcggca 315
Query: 2428 gtgccgttggccgccgtgccgtcgaggacgcggaggtcgccggtgacggtgagcgtgagc 2487
||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||| ||||
Sbjct: 314 gtgccgttggccgtggtgccgtcgagcacgcggagctcgcctgtgacggtgagcgcgagc 255
Query: 2488 gacggcgaggccgaggtggccggcgcgacgcggttggcgacccagacgacggtccgcggc 2547
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gacggcagcgccgaggtggccggcgcgacgcggttggcgacccagacgacggtccgcggc 195
Query: 2548 gagatgctgtggtaccagatgccgaggtactggcgagaaggctgcttggggtccggcgcg 2607
||||||| ||||||||||||||||||||||||||| || ||||| || | ||||||||||
Sbjct: 194 gagatgccgtggtaccagatgccgaggtactggcgggacggctggttcgtgtccggcgcg 135
Query: 2608 aagaagcccgcctcgaacaccccctccggcgaggacaccagcgtcgccgccccggacagc 2667
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 134 aagaagcccaactcgaacaccccctccggcgaggacaccagcgtggccgccccggacagc 75
Query: 2668 gactccccctgccgcagcgtgtccgtcttctgcgccgcca---cacagcatagcgaggcg 2724
|||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 74 gactgcccctgccgcagcgtgtccgtcgtctgcgccgccaccgcacagcatagcgaggcg 15
>gb|CW065419.1|CW065419 104_312_10523137_114_30128 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523137, DNA
sequence
Length = 619
Score = 569 bits (287), Expect = e-160
Identities = 405/444 (91%), Gaps = 9/444 (2%)
Strand = Plus / Minus
Query: 2315 catcctcgctgcgcacctcgaggctgccagtgtcctggagcaccgccgagtagccgcccc 2374
||||||||||| ||||||||||| |||| |||| |||||||||||||||||||||||||
Sbjct: 607 catcctcgctgggcacctcgaggttgccgctgtcatggagcaccgccgagtagccgcccc 548
Query: 2375 gcgggcccgcgcgcgaggtggtgttggaggaccagagcagcggcgcgtcggcggtgccgt 2434
||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 547 ttggggccgcgcgcgaggtggcgttggaggaccagagcagcggcgcgtcggcagtgccgt 488
Query: 2435 tggccgccgtgccgtcgaggacgcggaggtcgccggtgacggtgagcgtgagcgacggcg 2494
|||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct: 487 tggccgtggtgccgtcgaggacgcggagctcgcctgtgacggtgagcgcgagcgacggca 428
Query: 2495 aggccgaggtggccggcgcgacgcggttggcgacccagacgacggtccgcggcgagatgc 2554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gcgccgaggtggccggcgcgacgcggttggcgacccagacgacggtccgcggcgagatgc 368
Query: 2555 tgtggtaccagatgccgaggtactggcgagaaggctgcttggggtccggcgcgaagaagc 2614
||||||||||||||||||||||||||| || ||||| || | |||||||||||||||||
Sbjct: 367 cgtggtaccagatgccgaggtactggcgggacggctggttcgtgtccggcgcgaagaagc 308
Query: 2615 ccgcctcgaacaccccctccggcgaggacaccagcgtcgccgccccggacagcgactccc 2674
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 307 ccaactcgaacaccccctccggcgaggacaccagcgtggccgccccggacagcgactgcc 248
Query: 2675 cctgccgcagcgtgtccgtcttctgcgccgcca---cacagcatagcgaggcgccggcga 2731
|||||||||||||||||||| |||||||||||| ||||||||||||| |||||
Sbjct: 247 cctgccgcagcgtgtccgtcgtctgcgccgccaccgcacagcatagcga------ggcga 194
Query: 2732 ggagcaggaagaggagccgaggag 2755
||||| ||||||||||||||||||
Sbjct: 193 ggagcgggaagaggagccgaggag 170
>gb|CW338273.1|CW338273 104_838_11484656_116_36129_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484656, DNA
sequence
Length = 640
Score = 509 bits (257), Expect = e-142
Identities = 320/341 (93%)
Strand = Plus / Minus
Query: 184 atatcacaaattcagtatatttttcgtgttatacttcatcttccatgcaactgtgtcatt 243
||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||||||
Sbjct: 568 atatcacaacttcagtatatttttcgtgctatactctatcttccatgcagctgtgtcatt 509
Query: 244 gtcacagtgccaatggagtggctccggtccttctcgcttgacttgctggattcgatctca 303
| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 508 gacacagtgccaatggagtggctccggtccttctcgctcgacttgctggactcgatctca 449
Query: 304 cggcctcgaagcatcagcgtaggcggcctcggattaggaaggctcgagctgtcgttgctc 363
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cggcctcgaagcatcagggtaggcggcctcggattaggaaggctcgagctgtcgttgctc 389
Query: 364 agcataaggatgacagtggggatgtcaggtcgctcatctgcgtgatcttgcacgcacagc 423
| |||||||||||| ||||||||||||||||||||||| |||||||||||||| || |||
Sbjct: 388 aacataaggatgacggtggggatgtcaggtcgctcatcggcgtgatcttgcacacatagc 329
Query: 424 aacgcaatatggatgcatctcagcacctgccgaactgagcacgatgctcttatcactgga 483
|||||||| |||||||||||||| || || ||||| |||||||| |||||||||||||||
Sbjct: 328 aacgcaatgtggatgcatctcaggacttgtcgaaccgagcacgacgctcttatcactgga 269
Query: 484 tcgatcagctccgcagcattgtcttcgttccattgccgcca 524
||||||||||||||||| |||||||||||||||||||||||
Sbjct: 268 tcgatcagctccgcagccttgtcttcgttccattgccgcca 228
Score = 165 bits (83), Expect = 3e-038
Identities = 101/107 (94%)
Strand = Plus / Minus
Query: 527 catatccagcgatgttcaaggagtcctcgtgacagtggaagctcacagccctctttcctg 586
||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 107 catatcctgcgatattcaaggagtcctcatgacagtggaagctcacagctctctttcctg 48
Query: 587 tgatgatctccaagatcaggactccgaagccatagacgtcagacttg 633
||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 47 tgatgatctccaagatcaggactccaaagccgtagacgtcagacttg 1
Score = 46.1 bits (23), Expect = 0.017
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 136 caaatggcaaattatcaacatcaggaagggagaac 170
|||| |||||||||||||||||| ||||||||||
Sbjct: 617 caaacggcaaattatcaacatcacaaagggagaac 583
>gb|CW338274.1|CW338274 104_838_11484656_148_36128_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11484656, DNA
sequence
Length = 692
Score = 509 bits (257), Expect = e-142
Identities = 320/341 (93%)
Strand = Plus / Plus
Query: 184 atatcacaaattcagtatatttttcgtgttatacttcatcttccatgcaactgtgtcatt 243
||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||||||
Sbjct: 215 atatcacaacttcagtatatttttcgtgctatactctatcttccatgcagctgtgtcatt 274
Query: 244 gtcacagtgccaatggagtggctccggtccttctcgcttgacttgctggattcgatctca 303
| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 275 gacacagtgccaatggagtggctccggtccttctcgctcgacttgctggactcgatctca 334
Query: 304 cggcctcgaagcatcagcgtaggcggcctcggattaggaaggctcgagctgtcgttgctc 363
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cggcctcgaagcatcagggtaggcggcctcggattaggaaggctcgagctgtcgttgctc 394
Query: 364 agcataaggatgacagtggggatgtcaggtcgctcatctgcgtgatcttgcacgcacagc 423
| |||||||||||| ||||||||||||||||||||||| |||||||||||||| || |||
Sbjct: 395 aacataaggatgacggtggggatgtcaggtcgctcatcggcgtgatcttgcacacatagc 454
Query: 424 aacgcaatatggatgcatctcagcacctgccgaactgagcacgatgctcttatcactgga 483
|||||||| |||||||||||||| || || ||||| |||||||| |||||||||||||||
Sbjct: 455 aacgcaatgtggatgcatctcaggacttgtcgaaccgagcacgacgctcttatcactgga 514
Query: 484 tcgatcagctccgcagcattgtcttcgttccattgccgcca 524
||||||||||||||||| |||||||||||||||||||||||
Sbjct: 515 tcgatcagctccgcagccttgtcttcgttccattgccgcca 555
Score = 60.0 bits (30), Expect = 1e-006
Identities = 55/63 (87%), Gaps = 4/63 (6%)
Strand = Plus / Plus
Query: 27 ctcacctttgcaaaattaattgtcactt----aatgtatgacgctaatgtgattttcata 82
|||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||
Sbjct: 24 ctcacctttgcaaaattaattgccactttacgtatgtatgacgctacggtgattttcata 83
Query: 83 caa 85
|||
Sbjct: 84 caa 86
Score = 46.1 bits (23), Expect = 0.017
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 136 caaatggcaaattatcaacatcaggaagggagaac 170
|||| |||||||||||||||||| ||||||||||
Sbjct: 166 caaacggcaaattatcaacatcacaaagggagaac 200
>gb|BZ691788.1|BZ691788 SP__Ba0012H16.r SP__Ba Sorghum propinquum genomic clone SP__Ba0012H16
3', DNA sequence
Length = 913
Score = 458 bits (231), Expect = e-126
Identities = 303/327 (92%)
Strand = Plus / Plus
Query: 1462 tcagaagcaggaagcttcaggtttagagtatatgcccctgtttgcaactcatgcatgtca 1521
|||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 391 tcagaaacaggaagcttcaggtttagagtatatgccccagttggcaactcatgcatgtcg 450
Query: 1522 attagttcgttaccccaggctaggcaccctgttgtagctgtgtaaacataagcaccgcat 1581
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct: 451 attagttcgttaccccaggctaggcaccctgttgtactcgtgtatacataagcaccacat 510
Query: 1582 gagcagttgttaaggcagacagttctgcatccaggctcatctcccactgtagatacccaa 1641
||||||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||
Sbjct: 511 gagcagttgttcaggcagtcagttctgcacccagtctcatctgccactgtagatacccaa 570
Query: 1642 tatgagaaatcaggccactttatgtttcccattggaagaaatccatccccagactgattg 1701
||||| ||||||||||| |||||||||| |||||||||||||||||||||||| || |||
Sbjct: 571 tatgataaatcaggccattttatgtttctcattggaagaaatccatccccagattggttg 630
Query: 1702 gtctcacaacccagaggtgggctcctgatgcaaccttgactccaatttcctgcattccac 1761
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gcctcacaacccagaggagggctcctgatgcaaccttgactccaatttcctgcattccac 690
Query: 1762 tgctcctgcaacttcggatgaaaacct 1788
|||||||||| ||||||| | ||||||
Sbjct: 691 tgctcctgcagcttcggacggaaacct 717
Score = 182 bits (92), Expect = 1e-043
Identities = 104/108 (96%)
Strand = Plus / Plus
Query: 1349 ctttaatatttctaccatgcttccaccacagaagaaggcaagcagccaaaacaaataaca 1408
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 169 ctttaatatttctaccacgcttccaccacagaagaaggcaagcagccaaaacaaatagca 228
Query: 1409 ctatggctgatattatcgtggctattttccaaattgggtgatgtcctc 1456
||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 229 ctatggctgatgctatcgtggctattttccaaattgggtgatgtcctc 276
>gb|CW785524.1|CW785524 SP__Ba0012H16.r SP__Ba Sorghum propinquum genomic clone SP__Ba0012H16
3', DNA sequence
Length = 825
Score = 458 bits (231), Expect = e-126
Identities = 303/327 (92%)
Strand = Plus / Plus
Query: 1462 tcagaagcaggaagcttcaggtttagagtatatgcccctgtttgcaactcatgcatgtca 1521
|||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 377 tcagaaacaggaagcttcaggtttagagtatatgccccagttggcaactcatgcatgtcg 436
Query: 1522 attagttcgttaccccaggctaggcaccctgttgtagctgtgtaaacataagcaccgcat 1581
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct: 437 attagttcgttaccccaggctaggcaccctgttgtactcgtgtatacataagcaccacat 496
Query: 1582 gagcagttgttaaggcagacagttctgcatccaggctcatctcccactgtagatacccaa 1641
||||||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||||
Sbjct: 497 gagcagttgttcaggcagtcagttctgcacccagtctcatctgccactgtagatacccaa 556
Query: 1642 tatgagaaatcaggccactttatgtttcccattggaagaaatccatccccagactgattg 1701
||||| ||||||||||| |||||||||| |||||||||||||||||||||||| || |||
Sbjct: 557 tatgataaatcaggccattttatgtttctcattggaagaaatccatccccagattggttg 616
Query: 1702 gtctcacaacccagaggtgggctcctgatgcaaccttgactccaatttcctgcattccac 1761
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gcctcacaacccagaggagggctcctgatgcaaccttgactccaatttcctgcattccac 676
Query: 1762 tgctcctgcaacttcggatgaaaacct 1788
|||||||||| ||||||| | ||||||
Sbjct: 677 tgctcctgcagcttcggacggaaacct 703
Score = 182 bits (92), Expect = 1e-043
Identities = 104/108 (96%)
Strand = Plus / Plus
Query: 1349 ctttaatatttctaccatgcttccaccacagaagaaggcaagcagccaaaacaaataaca 1408
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 155 ctttaatatttctaccacgcttccaccacagaagaaggcaagcagccaaaacaaatagca 214
Query: 1409 ctatggctgatattatcgtggctattttccaaattgggtgatgtcctc 1456
||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 215 ctatggctgatgctatcgtggctattttccaaattgggtgatgtcctc 262
>gb|BZ693321.1|BZ693321 SP__Ba0032N02.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0032N02 3', DNA sequence
Length = 1072
Score = 400 bits (202), Expect = e-109
Identities = 229/238 (96%)
Strand = Plus / Minus
Query: 679 aatgtaccgacgacccgattcgtgttgaattggttttggtcccctccaaacatccttgcc 738
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 654 aatgtaccgacgacgcgattcgtattgaattggttttggtcccctccaaatatccttgcc 595
Query: 739 attccaaaatctgatatcttgggtttcatgtccgcgtccaggagaatgttgctggccttg 798
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 594 attccaaaatctgatatcttggggttcatgtccgcatccaggagaatgttgctggccttg 535
Query: 799 agatcacggtgaacaactcgcagcctcgaatcccggtggagatatagcagccctctagca 858
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 534 agatcgcggtgaacaactcgcaacctcgaatcccggtggagatatagcagccctctagca 475
Query: 859 atgccttcgattatatcaaaccgtttcttccagtctagaagccgttgcttttcaggat 916
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 474 atgccttcaattatatcaaaccgtttcttccagtctagaagcccttgcttttcaggat 417
Score = 361 bits (182), Expect = 2e-097
Identities = 203/210 (96%)
Strand = Plus / Minus
Query: 919 aagaggaatgcatctagacttttgttaggcatgtactcatacaccaggatcttctcttcc 978
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 327 aagaggaatgcatctagacttttgttaggcatgtactcatacaccaagatcttctcttct 268
Query: 979 ctcggtatgcagcaccctagtagtcttacaagattgcggtgctgcaactttgcaataagt 1038
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctctgtatgcagcaccccagtagtcttacaagattgcggtgctgcaactttgcaataagt 208
Query: 1039 atgacctcattcttgaattcttcaaggccttgacctgaattcctacaaagcctcttcaca 1098
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 207 atgacctcattcttgaattcttcaaggccttgacctgaattcctacaaagcctcttgaca 148
Query: 1099 gctacttcttctcccccaggtaaagttccc 1128
|||||||||||||||||||| || ||||||
Sbjct: 147 gctacttcttctcccccaggaaatgttccc 118
Score = 238 bits (120), Expect = 2e-060
Identities = 144/152 (94%)
Strand = Plus / Minus
Query: 527 catatccagcgatgttcaaggagtcctcgtgacagtggaagctcacagccctctttcctg 586
||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 889 catatcctgcgatattcaaggagtcctcatgacagtggaagctcacagccctctttcctg 830
Query: 587 tgatgatctccaagatcaggactccgaagccatagacgtcagacttgactgaaaaaatgc 646
||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |
Sbjct: 829 tgatgatctccaagatcaggactccaaagccgtagacgtcagacttgactgagaaaatac 770
Query: 647 cttccattgcgtattcaggagacatgtagcca 678
|||||||||| |||||||||||||||||||||
Sbjct: 769 cttccattgcatattcaggagacatgtagcca 738
>gb|CW787281.1|CW787281 SP__Ba0032N02.r SP__Ba Sorghum propinquum genomic clone
SP__Ba0032N02 3', DNA sequence
Length = 848
Score = 400 bits (202), Expect = e-109
Identities = 229/238 (96%)
Strand = Plus / Minus
Query: 679 aatgtaccgacgacccgattcgtgttgaattggttttggtcccctccaaacatccttgcc 738
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 618 aatgtaccgacgacgcgattcgtattgaattggttttggtcccctccaaatatccttgcc 559
Query: 739 attccaaaatctgatatcttgggtttcatgtccgcgtccaggagaatgttgctggccttg 798
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 558 attccaaaatctgatatcttggggttcatgtccgcatccaggagaatgttgctggccttg 499
Query: 799 agatcacggtgaacaactcgcagcctcgaatcccggtggagatatagcagccctctagca 858
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 498 agatcgcggtgaacaactcgcaacctcgaatcccggtggagatatagcagccctctagca 439
Query: 859 atgccttcgattatatcaaaccgtttcttccagtctagaagccgttgcttttcaggat 916
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 438 atgccttcaattatatcaaaccgtttcttccagtctagaagcccttgcttttcaggat 381
Score = 339 bits (171), Expect = 8e-091
Identities = 201/210 (95%), Gaps = 1/210 (0%)
Strand = Plus / Minus
Query: 919 aagaggaatgcatctagacttttgttaggcatgtactcatacaccaggatcttctcttcc 978
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 291 aagaggaatgcatctagacttttgttaggcatgtactcatacaccaagatcttctcttct 232
Query: 979 ctcggtatgcagcaccctagtagtcttacaagattgcggtgctgcaactttgcaataagt 1038
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ctctgtatgcagcaccccagtagtcttacaagattgcggtgctgcaactttgcaataagt 172
Query: 1039 atgacctcattcttgaattcttcaaggccttgacctgaattcctacaaagcctcttcaca 1098
||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct: 171 atgacctcattcttgaattcttcaaggccttgacctgaattcctacaaancct-ttgaca 113
Query: 1099 gctacttcttctcccccaggtaaagttccc 1128
|||||||||||||||||||| || ||||||
Sbjct: 112 gctacttcttctcccccaggaaatgttccc 83
Score = 230 bits (116), Expect = 6e-058
Identities = 137/144 (95%)
Strand = Plus / Minus
Query: 535 gcgatgttcaaggagtcctcgtgacagtggaagctcacagccctctttcctgtgatgatc 594
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 845 gcgatattcaaggagtcctcatgacagtggaagctcacagccctctttcctgtgatgatc 786
Query: 595 tccaagatcaggactccgaagccatagacgtcagacttgactgaaaaaatgccttccatt 654
||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||
Sbjct: 785 tccaagatcaggactccaaagccgtagacgtcagacttgactgagaaaataccttccatt 726
Query: 655 gcgtattcaggagacatgtagcca 678
|| |||||||||||||||||||||
Sbjct: 725 gcatattcaggagacatgtagcca 702
>gb|CL172924.1|CL172924 104_376_10890520_116_31795_040 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890520, DNA
sequence
Length = 750
Score = 361 bits (182), Expect = 2e-097
Identities = 203/210 (96%)
Strand = Plus / Plus
Query: 919 aagaggaatgcatctagacttttgttaggcatgtactcatacaccaggatcttctcttcc 978
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 150 aagaggaatgcatctagacttttgttaggcatgtactcatacaccaagatcttctcttct 209
Query: 979 ctcggtatgcagcaccctagtagtcttacaagattgcggtgctgcaactttgcaataagt 1038
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ctctgtatgcagcaccccagtagtcttacaagattgcggtgctgcaactttgcaataagt 269
Query: 1039 atgacctcattcttgaattcttcaaggccttgacctgaattcctacaaagcctcttcaca 1098
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 270 atgacctcattcttgaattcttcaaggccttgacctgaattcctacaaagcctcttgaca 329
Query: 1099 gctacttcttctcccccaggtaaagttccc 1128
|||||||||||||||||||| || ||||||
Sbjct: 330 gctacttcttctcccccaggaaatgttccc 359
Score = 341 bits (172), Expect = 2e-091
Identities = 211/224 (94%)
Strand = Plus / Plus
Query: 1127 ccatatagacaggaccaaatcctccttctccaagcttgttagagtcactaaaattacttg 1186
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 455 ccatatagacaggaccaaatcctccttctccaagcttgttagagtcactgaaattgcttg 514
Query: 1187 tagcagttcttatacggtccagcgagtacactttgagttcatgactttttccatcctcca 1246
|||||| | |||| || ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 515 tagcagcttttatgcgttccagggagtacactttgagttcatgacttttcccatcctcca 574
Query: 1247 catcatcatcaaaacgaattgactgcgagatgtccagcatagcactattctgctgggatt 1306
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 575 catcatcatcaaaacgaatcgactgcgagatgtccagcatagcactattctgctgggatc 634
Query: 1307 gggtagacgaatgccttgatctccaacttccgtgcactgcatct 1350
||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct: 635 gggaagatgaatgccttgatctccaacttctgtgcactgcatct 678
Score = 87.7 bits (44), Expect = 5e-015
Identities = 57/60 (95%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 858 aatgccttcgattatatcaaacc-gtttcttccagtctagaagccgttgcttttcaggat 916
||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 1 aatgccttcaattatatcaaaccngtttcttccagtctagaagcccttgcttttcaggat 60
>gb|CW065420.1|CW065420 104_312_10523137_115_30130 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523137, DNA
sequence
Length = 571
Score = 351 bits (177), Expect = 2e-094
Identities = 258/283 (91%), Gaps = 9/283 (3%)
Strand = Plus / Plus
Query: 2095 gacctccagtacgtaacgttgccatctttccagatgtaggcctgaccggagttgcccggg 2154
||||||||||| ||||| ||||| ||||||||||||||||||||| || ||| |||
Sbjct: 288 gacctccagtaggtaacattgccgtctttccagatgtaggcctgagcg---ttg---ggg 341
Query: 2155 tcgaggccgagcgcgtatcgccccggcgaagggtccgtctcgctggcccaggacgtgaac 2214
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 342 tcgaggccgagcgcgtaccgccccggcgaggggtccgtctcgctggcccaggacgtgaac 401
Query: 2215 agcatccgctccttagggcccctccctggcgcctgcaaggtgatgcgcatcccggacagg 2274
|||||||||||||| || |||||||| |||| |||||||||||| |||||||||||||||
Sbjct: 402 agcatccgctccttgggacccctcccgggcgtctgcaaggtgattcgcatcccggacagg 461
Query: 2275 atggtgtccgtcgggtgccagaagctgtcccagagcaccc---catcctcgctgcgcacc 2331
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 462 atggtgtccgtcgggtgcgagaagctgtcccagagcaccccatcatcctcgctgcgcacc 521
Query: 2332 tcgaggctgccagtgtcctggagcaccgccgagtagccgcccc 2374
|||||| |||| |||| |||||||||||||||||||||||||
Sbjct: 522 tcgaggttgccgctgtcatggagcaccgccgagtagccgcccc 564
>gb|CL172925.1|CL172925 104_376_10890520_148_31794_040 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890520, DNA
sequence
Length = 756
Score = 236 bits (119), Expect = 9e-060
Identities = 140/147 (95%)
Strand = Plus / Minus
Query: 1204 tccagcgagtacactttgagttcatgactttttccatcctccacatcatcatcaaaacga 1263
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 749 tccagggagtacactttgagttcatgacttttcccatcctccacatcatcatcaaaacga 690
Query: 1264 attgactgcgagatgtccagcatagcactattctgctgggattgggtagacgaatgcctt 1323
|| ||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||
Sbjct: 689 atcgactgcgagatgtccagcatagcactattctgctgggatcgggaagatgaatgcctt 630
Query: 1324 gatctccaacttccgtgcactgcatct 1350
||||||||||||| |||||||||||||
Sbjct: 629 gatctccaacttctgtgcactgcatct 603
Score = 182 bits (92), Expect = 1e-043
Identities = 104/108 (96%)
Strand = Plus / Minus
Query: 1349 ctttaatatttctaccatgcttccaccacagaagaaggcaagcagccaaaacaaataaca 1408
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 141 ctttaatatttctaccacgcttccaccacagaagaaggcaagcagccaaaacaaatagca 82
Query: 1409 ctatggctgatattatcgtggctattttccaaattgggtgatgtcctc 1456
||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 81 ctatggctgatgctatcgtggctattttccaaattgggtgatgtcctc 34
>gb|CW290762.1|CW290762 104_770_11413189_116_35761_061 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11413189, DNA
sequence
Length = 647
Score = 218 bits (110), Expect = 2e-054
Identities = 171/191 (89%), Gaps = 9/191 (4%)
Strand = Plus / Plus
Query: 2568 gccgaggtactggcgagaaggctgcttggggtccggcgcgaagaagcccgcctcgaacac 2627
||||||||||||||| || ||||| || | ||||||||||||||||||| |||||||||
Sbjct: 1 gccgaggtactggcgggacggctggttcgtgtccggcgcgaagaagcccaactcgaacac 60
Query: 2628 cccctccggcgaggacaccagcgtcgccgccccggacagcgactccccctgccgcagcgt 2687
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 61 cccctccggcgaggacaccagcgtggccgccccggacagcgactgcccctgccgcagcgt 120
Query: 2688 gtccgtcttctgcgccgcca---cacagcatagcgaggcgccggcgaggagcaggaagag 2744
||||||| |||||||||||| ||||||||||||| |||||||||| |||||||
Sbjct: 121 gtccgtcgtctgcgccgccaccgcacagcatagcga------ggcgaggagcgggaagag 174
Query: 2745 gagccgaggag 2755
|||||||||||
Sbjct: 175 gagccgaggag 185
>gb|CW353023.1|CW353023 fsbb001f015j07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f015j07, DNA
sequence
Length = 726
Score = 79.8 bits (40), Expect = 1e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 742 ccaaaatctgatatcttgggtttcatgtccgcgtccaggagaatgttgctggccttgaga 801
||||||||||| |||||||| ||||| ||| |||| || || ||||||||||||||||||
Sbjct: 324 ccaaaatctgagatcttggggttcatctccacgtctagcaggatgttgctggccttgaga 383
Query: 802 tcacggtg 809
||||||||
Sbjct: 384 tcacggtg 391
>gb|CW501258.1|CW501258 fsbb001f296p21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f296p21, DNA
sequence
Length = 645
Score = 77.8 bits (39), Expect = 5e-012
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 743 caaaatctgatatcttgggtttcatgtccgcgtccaggagaatgttgctggccttgagat 802
|||||||||| |||||||| ||||| ||| |||| || || |||||||||||||||||||
Sbjct: 63 caaaatctgagatcttggggttcatctccacgtctagcaggatgttgctggccttgagat 122
Query: 803 cacggtg 809
|||||||
Sbjct: 123 cacggtg 129
>gb|BE362824.1|BE362824 DG1_89_C06.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 442
Score = 71.9 bits (36), Expect = 3e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 742 ccaaaatctgatatcttgggtttcatgtccgcgtccaggagaatgttgctggccttgaga 801
||||||||||| |||||||| ||||| ||| |||| || || ||||||||||||||||||
Sbjct: 310 ccaaaatctgagatcttggggttcatctccacgtctagcaggatgttgctggccttgaga 251
Query: 802 tcac 805
||||
Sbjct: 250 tcac 247
>gb|CX607333.1|CX607333 ANR1_8_A08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_8_A08_A002 3', mRNA sequence
Length = 710
Score = 71.9 bits (36), Expect = 3e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 742 ccaaaatctgatatcttgggtttcatgtccgcgtccaggagaatgttgctggccttgaga 801
||||||||||| |||||||| ||||| ||| |||| || | ||||||||||||||||||
Sbjct: 559 ccaaaatctgagatcttggggttcatctccacgtctagcaagatgttgctggccttgaga 500
Query: 802 tcacggtg 809
||||||||
Sbjct: 499 tcacggtg 492
>gb|CD205281.1|CD205281 HS1_13_E09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_13_E09_A012 3', mRNA sequence
Length = 122
Score = 67.9 bits (34), Expect = 5e-009
Identities = 56/63 (88%), Gaps = 4/63 (6%)
Strand = Plus / Minus
Query: 27 ctcacctttgcaaaattaattgtcacttaa----tgtatgacgctaatgtgattttcata 82
|||||||||||||||||||||| ||||| | ||||||||||||| ||||||||||||
Sbjct: 114 ctcacctttgcaaaattaattgccactttacgtatgtatgacgctaaggtgattttcata 55
Query: 83 caa 85
|||
Sbjct: 54 caa 52
>gb|CW238660.1|CW238660 104_695_11216850_116_37418_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11216850, DNA
sequence
Length = 634
Score = 65.9 bits (33), Expect = 2e-008
Identities = 111/137 (81%)
Strand = Plus / Plus
Query: 919 aagaggaatgcatctagacttttgttaggcatgtactcatacaccaggatcttctcttcc 978
|||||||| || || || || ||||| ||||||||||| || |||||||||||||| |||
Sbjct: 84 aagaggaaggcgtcgaggctcttgttgggcatgtactcgtagaccaggatcttctcctcc 143
Query: 979 ctcggtatgcagcaccctagtagtcttacaagattgcggtgctgcaactttgcaataagt 1038
| | | |||||||| ||||| | | ||||| ||||||||||||| ||| || || ||
Sbjct: 144 ccctggatgcagcaacctagcaacttcacaaggttgcggtgctgcagcttggcgatcagg 203
Query: 1039 atgacctcattcttgaa 1055
|| ||||| ||||||||
Sbjct: 204 atcacctcgttcttgaa 220
>gb|CW438524.1|CW438524 fsbb001f156d07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f156d07, DNA
sequence
Length = 811
Score = 65.9 bits (33), Expect = 2e-008
Identities = 111/137 (81%)
Strand = Plus / Plus
Query: 919 aagaggaatgcatctagacttttgttaggcatgtactcatacaccaggatcttctcttcc 978
|||||||| || || || || ||||| ||||||||||| || |||||||||||||| |||
Sbjct: 86 aagaggaaggcgtcgaggctcttgttgggcatgtactcgtagaccaggatcttctcctcc 145
Query: 979 ctcggtatgcagcaccctagtagtcttacaagattgcggtgctgcaactttgcaataagt 1038
| | | |||||||| ||||| | | ||||| ||||||||||||| ||| || || ||
Sbjct: 146 ccctggatgcagcaacctagcaacttcacaaggttgcggtgctgcagcttggcgatcagg 205
Query: 1039 atgacctcattcttgaa 1055
|| ||||| ||||||||
Sbjct: 206 atcacctcgttcttgaa 222
>gb|CL173256.1|CL173256 104_376_10890746_148_31794_266 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10890746, DNA
sequence
Length = 766
Score = 63.9 bits (32), Expect = 7e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 754 atcttgggtttcatgtccgcgtccaggagaatgttgctggccttgagatcacggtg 809
|||||||| ||||||| ||||||||| | |||||||||||||||||||| |||||
Sbjct: 63 atcttggggttcatgttcgcgtccagcaagatgttgctggccttgagatcgcggtg 8
>gb|CL186444.1|CL186444 104_401_10900209_114_32408_043 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10900209, DNA
sequence
Length = 729
Score = 63.9 bits (32), Expect = 7e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 754 atcttgggtttcatgtccgcgtccaggagaatgttgctggccttgagatcacggtg 809
|||||||| ||||||| ||||||||| | |||||||||||||||||||| |||||
Sbjct: 143 atcttggggttcatgttcgcgtccagcaagatgttgctggccttgagatcccggtg 88
>gb|CW092776.1|CW092776 104_455_10999375_114_33047_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10999375, DNA
sequence
Length = 728
Score = 63.9 bits (32), Expect = 7e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 754 atcttgggtttcatgtccgcgtccaggagaatgttgctggccttgagatcacggtg 809
|||||||| ||||||| ||||||||| | |||||||||||||||||||| |||||
Sbjct: 565 atcttggggttcatgttcgcgtccagcaagatgttgctggccttgagatcgcggtg 510
>gb|CW106786.1|CW106786 104_476_11096183_116_34466_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11096183, DNA
sequence
Length = 566
Score = 63.9 bits (32), Expect = 7e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 754 atcttgggtttcatgtccgcgtccaggagaatgttgctggccttgagatcacggtg 809
|||||||| ||||||| ||||||||| | |||||||||||||||||||| |||||
Sbjct: 410 atcttggggttcatgttcgcgtccagcaagatgttgctggccttgagatcgcggtg 355
>gb|CW261092.1|CW261092 104_728_11229321_116_35174_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229321, DNA
sequence
Length = 615
Score = 63.9 bits (32), Expect = 7e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 754 atcttgggtttcatgtccgcgtccaggagaatgttgctggccttgagatcacggtg 809
|||||||| ||||||||| ||||||||| ||||||| |||||||||||| |||||
Sbjct: 240 atcttggggttcatgtccttgtccaggaggatgttgccggccttgagatcccggtg 185
>gb|CW269904.1|CW269904 104_741_11402092_116_35325_012 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11402092, DNA
sequence
Length = 602
Score = 63.9 bits (32), Expect = 7e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 754 atcttgggtttcatgtccgcgtccaggagaatgttgctggccttgagatcacggtg 809
|||||||| ||||||| ||||||||| | |||||||||||||||||||| |||||
Sbjct: 326 atcttggggttcatgttcgcgtccagcaagatgttgctggccttgagatcccggtg 381
>gb|CW284177.1|CW284177 104_760_11409636_116_35484_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11409636, DNA
sequence
Length = 678
Score = 63.9 bits (32), Expect = 7e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 754 atcttgggtttcatgtccgcgtccaggagaatgttgctggccttgagatcacggtg 809
|||||||| ||||||| ||||||||| | |||||||||||||||||||| |||||
Sbjct: 431 atcttggggttcatgttcgcgtccagcaagatgttgctggccttgagatcccggtg 376
>gb|CW284178.1|CW284178 104_760_11409636_148_35488_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11409636, DNA
sequence
Length = 653
Score = 63.9 bits (32), Expect = 7e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 754 atcttgggtttcatgtccgcgtccaggagaatgttgctggccttgagatcacggtg 809
|||||||| ||||||| ||||||||| | |||||||||||||||||||| |||||
Sbjct: 438 atcttggggttcatgttcgcgtccagcaagatgttgctggccttgagatcccggtg 493
>gb|CW298502.1|CW298502 104_781_11462613_116_35658_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462613, DNA
sequence
Length = 653
Score = 63.9 bits (32), Expect = 7e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 754 atcttgggtttcatgtccgcgtccaggagaatgttgctggccttgagatcacggtg 809
|||||||| ||||||| ||||||||| | |||||||||||||||||||| |||||
Sbjct: 358 atcttggggttcatgttcgcgtccagcaagatgttgctggccttgagatcgcggtg 413
>gb|CW298503.1|CW298503 104_781_11462613_148_35654_093 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462613, DNA
sequence
Length = 652
Score = 63.9 bits (32), Expect = 7e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 754 atcttgggtttcatgtccgcgtccaggagaatgttgctggccttgagatcacggtg 809
|||||||| ||||||| ||||||||| | |||||||||||||||||||| |||||
Sbjct: 552 atcttggggttcatgttcgcgtccagcaagatgttgctggccttgagatcgcggtg 497
>gb|CW388204.1|CW388204 fsbb001f072n22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072n22, DNA
sequence
Length = 713
Score = 63.9 bits (32), Expect = 7e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 754 atcttgggtttcatgtccgcgtccaggagaatgttgctggccttgagatcacggtg 809
|||||||| ||||||| ||||||||| | |||||||||||||||||||| |||||
Sbjct: 566 atcttggggttcatgttcgcgtccagcaagatgttgctggccttgagatcgcggtg 511
>gb|CW388205.1|CW388205 fsbb001f072n22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f072n22, DNA
sequence
Length = 668
Score = 63.9 bits (32), Expect = 7e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 754 atcttgggtttcatgtccgcgtccaggagaatgttgctggccttgagatcacggtg 809
|||||||| ||||||| ||||||||| | |||||||||||||||||||| |||||
Sbjct: 390 atcttggggttcatgttcgcgtccagcaagatgttgctggccttgagatcgcggtg 445
>gb|CW394723.1|CW394723 fsbb001f082h08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f082h08, DNA
sequence
Length = 706
Score = 63.9 bits (32), Expect = 7e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 754 atcttgggtttcatgtccgcgtccaggagaatgttgctggccttgagatcacggtg 809
|||||||| ||||||||| ||||||||| ||||||| |||||||||||| |||||
Sbjct: 216 atcttggggttcatgtccttgtccaggaggatgttgccggccttgagatcccggtg 271
>gb|CX607332.1|CX607332 ANR1_8_A07.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_8_A07_A002 3', mRNA sequence
Length = 262
Score = 63.9 bits (32), Expect = 7e-008
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 742 ccaaaatctgatatcttgggtttcatgtccgcgtccaggagaatgttgctggccttgaga 801
||||||||||| |||||||| ||||| ||| |||| || | ||||||||||||||||||
Sbjct: 170 ccaaaatctgagatcttggggttcatctccacgtctagcaagatgttgctggccttgaga 111
Query: 802 tcac 805
||||
Sbjct: 110 tcac 107
>gb|CX614101.1|CX614101 GABR1_12_C05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_12_C05_A002 3', mRNA sequence
Length = 588
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 594 ctccaagatcaggactccgaagccatagacgtcagacttgactgaaaaaatgccttccat 653
||||||||||| ||| || |||| |||||| |||||||||| || || | ||||||||
Sbjct: 174 ctccaagatcaagacgccaaagctatagacatcagacttgatagagaagactccttccat 115
Query: 654 tgcgtattcaggagacatgtagccaaatgtaccgacgac 692
||| || ||||||| |||||||||| |||| || |||||
Sbjct: 114 tgcatactcaggagccatgtagccatatgttcccacgac 76
Score = 44.1 bits (22), Expect = 0.069
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 730 atccttgccattccaaaatctgatatcttgggtttcat 767
||||||||||| ||||| |||| |||||||||| ||||
Sbjct: 38 atccttgccataccaaagtctgctatcttgggtctcat 1
>gb|CW077087.1|CW077087 104_377_10891159_116_31793_295 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10891159, DNA
sequence
Length = 778
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 724 ccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggaga 783
||||| ||||| ||||| || || ||||| |||||||| |||||| | | || || ||
Sbjct: 144 ccaaagatcctggccatgccgaagtctgagatcttggggttcatgctctcatctagcagg 203
Query: 784 atgttgctggccttgagatcacggtg 809
||||||||||||||||||||||||||
Sbjct: 204 atgttgctggccttgagatcacggtg 229
>gb|CW146606.1|CW146606 104_539_11139082_148_34985_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11139082, DNA
sequence
Length = 658
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 714 ttggtcccctccaaacatccttgccattccaaaatctgatatcttgggtttcat 767
||||| ||||||||| || |||||||| ||||||||||||||||| || |||||
Sbjct: 157 ttggttccctccaaagattcttgccataccaaaatctgatatcttagggttcat 210
>gb|CW157004.1|CW157004 104_560_11146994_116_36382_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146994, DNA
sequence
Length = 639
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 724 ccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggaga 783
||||| ||||| ||||| || || ||||| |||||||| |||||| | | || || ||
Sbjct: 604 ccaaagatcctggccatgccgaagtctgagatcttggggttcatgctctcatctagcagg 545
Query: 784 atgttgctggccttgagatcacggtg 809
||||||||||||||||||||||||||
Sbjct: 544 atgttgctggccttgagatcacggtg 519
>gb|CW157005.1|CW157005 104_560_11146994_148_36381_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146994, DNA
sequence
Length = 617
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 724 ccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggaga 783
||||| ||||| ||||| || || ||||| |||||||| |||||| | | || || ||
Sbjct: 421 ccaaagatcctggccatgccgaagtctgagatcttggggttcatgctctcatctagcagg 480
Query: 784 atgttgctggccttgagatcacggtg 809
||||||||||||||||||||||||||
Sbjct: 481 atgttgctggccttgagatcacggtg 506
>gb|CW405377.1|CW405377 fsbb001f097o11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f097o11, DNA
sequence
Length = 785
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 724 ccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggaga 783
||||| ||||| ||||| || || ||||| |||||||| |||||| | | || || ||
Sbjct: 625 ccaaagatcctggccatgccgaagtctgagatcttggggttcatgctctcatctagcagg 566
Query: 784 atgttgctggccttgagatcacggtg 809
||||||||||||||||||||||||||
Sbjct: 565 atgttgctggccttgagatcacggtg 540
>gb|BE597884.1|BE597884 PI1_66_F03.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 623
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 724 ccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggaga 783
||||| ||||| ||||| || || ||||| |||||||| |||||| | | || || ||
Sbjct: 104 ccaaagatcctggccatgccgaagtctgagatcttggggttcatgctctcatctagcagg 45
Query: 784 atgttgctggccttgagatcacggtg 809
||||||||||||||||||||||||||
Sbjct: 44 atgttgctggccttgagatcacggtg 19
>gb|BE598651.1|BE598651 PI1_84_A03.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 592
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 724 ccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggaga 783
||||| ||||| ||||| || || ||||| |||||||| |||||| | | || || ||
Sbjct: 89 ccaaagatcctggccatgccgaagtctgagatcttggggttcatgctctcatctagcagg 30
Query: 784 atgttgctggccttgagatcacggtg 809
||||||||||||||||||||||||||
Sbjct: 29 atgttgctggccttgagatcacggtg 4
>gb|BE598982.1|BE598982 PI1_84_A03.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 496
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 724 ccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggaga 783
||||| ||||| ||||| || || ||||| |||||||| |||||| | | || || ||
Sbjct: 341 ccaaagatcctggccatgccgaagtctgagatcttggggttcatgctctcatctagcagg 282
Query: 784 atgttgctggccttgagatcacggtg 809
||||||||||||||||||||||||||
Sbjct: 281 atgttgctggccttgagatcacggtg 256
>gb|BM324586.1|BM324586 PIC1_33_A11.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 595
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 724 ccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggaga 783
||||| ||||| ||||| || || ||||| |||||||| |||||| | | || || ||
Sbjct: 396 ccaaagatcctggccatgccgaagtctgagatcttggggttcatgctctcatctagcagg 337
Query: 784 atgttgctggccttgagatcacggtg 809
||||||||||||||||||||||||||
Sbjct: 336 atgttgctggccttgagatcacggtg 311
>gb|BM326396.1|BM326396 PIC1_56_E08.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 503
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 724 ccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggaga 783
||||| ||||| ||||| || || ||||| |||||||| |||||| | | || || ||
Sbjct: 141 ccaaagatcctggccatgccgaagtctgagatcttggggttcatgctctcatctagcagg 82
Query: 784 atgttgctggccttgagatcacggtg 809
||||||||||||||||||||||||||
Sbjct: 81 atgttgctggccttgagatcacggtg 56
>gb|BM326570.1|BM326570 PIC1_58_F12.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 597
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 724 ccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggaga 783
||||| ||||| ||||| || || ||||| |||||||| |||||| | | || || ||
Sbjct: 396 ccaaagatcctggccatgccgaagtctgagatcttggggttcatgctctcatctagcagg 337
Query: 784 atgttgctggccttgagatcacggtg 809
||||||||||||||||||||||||||
Sbjct: 336 atgttgctggccttgagatcacggtg 311
>gb|BM329073.1|BM329073 PIC1_33_A11.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 675
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 724 ccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggaga 783
||||| ||||| ||||| || || ||||| |||||||| |||||| | | || || ||
Sbjct: 153 ccaaagatcctggccatgccgaagtctgagatcttggggttcatgctctcatctagcagg 94
Query: 784 atgttgctggccttgagatcacggtg 809
||||||||||||||||||||||||||
Sbjct: 93 atgttgctggccttgagatcacggtg 68
>gb|CX622440.1|CX622440 GABR1_64_A08.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_64_A08_A002 3', mRNA sequence
Length = 667
Score = 60.0 bits (30), Expect = 1e-006
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 724 ccaaacatccttgccattccaaaatctgatatcttgggtttcatgtccgcgtccaggaga 783
||||| ||||| ||||| || || ||||| |||||||| |||||| | | || || ||
Sbjct: 127 ccaaagatcctggccatgccgaagtctgagatcttggggttcatgctctcatctagcagg 68
Query: 784 atgttgctggccttgagatcacggtg 809
||||||||||||||||||||||||||
Sbjct: 67 atgttgctggccttgagatcacggtg 42
>gb|AF527808.1| Sorghum bicolor clone BAC SBTXS_0040L6 php200725 orthologous region
Length = 90923
Score = 60.0 bits (30), Expect = 1e-006
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 714 ttggtcccctccaaacatccttgccattccaaaatctgatatcttgggtttcat 767
||||| ||||||||| || |||||||| ||||||||||||||||| || |||||
Sbjct: 31941 ttggttccctccaaagattcttgccataccaaaatctgatatcttagggttcat 31888
Score = 44.1 bits (22), Expect = 0.069
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 649 tccattgcgtattcaggagacatgta 674
|||||||| |||||||||||||||||
Sbjct: 32101 tccattgcatattcaggagacatgta 32076
>gb|CW213213.1|CW213213 104_644_11191427_116_37030_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191427, DNA
sequence
Length = 602
Score = 58.0 bits (29), Expect = 5e-006
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 714 ttggtcccctccaaacatccttgccattccaaaatctgatatctt 758
||||| ||||||||| || |||||||| |||||||||||||||||
Sbjct: 558 ttggttccctccaaagattcttgccataccaaaatctgatatctt 602
Score = 44.1 bits (22), Expect = 0.069
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 649 tccattgcgtattcaggagacatgta 674
|||||||| |||||||||||||||||
Sbjct: 394 tccattgcatattcaggagacatgta 419
>gb|CW452241.1|CW452241 fsbb001f192k21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f192k21, DNA
sequence
Length = 697
Score = 58.0 bits (29), Expect = 5e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 625 tcagacttgactgaaaaaatgccttccattgcgtattcaggagacatgtagcc 677
||||||||||| ||||| |||||| |||||| |||||||||| |||||||||
Sbjct: 56 tcagacttgacagaaaatatgcctctcattgcatattcaggagccatgtagcc 4
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 759,704
Number of Sequences: 832831
Number of extensions: 759704
Number of successful extensions: 209454
Number of sequences better than 0.5: 147
Number of HSP's better than 0.5 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 209165
Number of HSP's gapped (non-prelim): 276
length of query: 2766
length of database: 491,359,669
effective HSP length: 21
effective length of query: 2745
effective length of database: 473,870,218
effective search space: 1300773748410
effective search space used: 1300773748410
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)