BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763110.2.1
(541 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW030266.1|CW030266 104_258_10500151_116_30404 Sorghum m... 595 e-168
gb|CD213473.1|CD213473 HS1_41_D11.b1_A012 Heat-shocked seed... 589 e-166
gb|CL192226.1|CL192226 104_414_10940089_114_32247_001 Sorgh... 587 e-166
gb|CW299421.1|CW299421 104_782_11463104_148_35687_026 Sorgh... 563 e-159
gb|CW030265.1|CW030265 104_258_10500151_114_30403 Sorghum m... 428 e-118
gb|AW677294.1|AW677294 DG1_5_H08.g1_A002 Dark Grown 1 (DG1)... 377 e-103
gb|AW923233.1|AW923233 DG1_50_A08.g1_A002 Dark Grown 1 (DG1... 317 6e-085
gb|CB925902.1|CB925902 ABA1_30_H12.b1_A012 Abscisic acid-tr... 206 2e-051
gb|CW181787.1|CW181787 104_597_11163701_116_36655_031 Sorgh... 172 2e-041
gb|CF756907.1|CF756907 DSAF1_11_B05.g1_A011 Drought-stresse... 70 2e-010
gb|CW181788.1|CW181788 104_597_11163701_148_36656_031 Sorgh... 66 4e-009
gb|CL192227.1|CL192227 104_414_10940089_116_32251_001 Sorgh... 56 3e-006
gb|BZ779926.1|BZ779926 ii35e07.g1 WGS-SbicolorF (DH5a methy... 46 0.003
gb|CW188052.1|CW188052 104_607_11172812_116_36728_070 Sorgh... 46 0.003
gb|AW679544.1|AW679544 WS1_29_D01.g1_A002 Water-stressed 1 ... 46 0.003
gb|BG933110.1|BG933110 WS1_29_D01.b1_A002 Water-stressed 1 ... 46 0.003
gb|CB924446.1|CB924446 ABA1_21_F08.b1_A012 Abscisic acid-tr... 46 0.003
gb|CD205908.1|CD205908 HS1_19_B08.b1_A012 Heat-shocked seed... 46 0.003
gb|CD212860.1|CD212860 HS1_17_H04.b1_A012 Heat-shocked seed... 46 0.003
gb|CD424723.1|CD424723 SA1_7_D01.b1_A002 Salicylic acid-tre... 46 0.003
gb|CD427023.1|CD427023 SA1_17_C08.b1_A002 Salicylic acid-tr... 46 0.003
gb|CF770824.1|CF770824 DSBF1_10_B04.g1_A010 Drought-stresse... 46 0.003
gb|CN147616.1|CN147616 WOUND1_50_G10.g1_A002 Wounded leaves... 46 0.003
gb|CW132069.1|CW132069 104_515_11116013_148_34794_027 Sorgh... 40 0.20
gb|CW203827.1|CW203827 104_631_11186219_116_37092_038 Sorgh... 40 0.20
gb|CW264501.1|CW264501 104_733_11231332_116_35254_010 Sorgh... 40 0.20
gb|CW423487.1|CW423487 fsbb001f133f09f0 Sorghum methylation... 40 0.20
gb|CN126076.1|CN126076 RHOH1_15_B06.b1_A002 Acid- and alkal... 40 0.20
gb|CX608661.1|CX608661 ANR1_40_A09.b1_A002 Anaerobic roots ... 40 0.20
gb|CX610538.1|CX610538 ANR1_19_G09.b1_A002 Anaerobic roots ... 40 0.20
gb|CX611043.1|CX611043 ANR1_22_G05.b1_A002 Anaerobic roots ... 40 0.20
gb|CX611163.1|CX611163 ANR1_23_B06.b1_A002 Anaerobic roots ... 40 0.20
gb|CX622143.1|CX622143 GABR1_62_F09.b2_A002 GA- or brassino... 40 0.20
>gb|CW030266.1|CW030266 104_258_10500151_116_30404 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500151, DNA
sequence
Length = 752
Score = 595 bits (300), Expect = e-168
Identities = 460/512 (89%), Gaps = 11/512 (2%)
Strand = Plus / Minus
Query: 8 gagaacttcaggatccacccaccggggaccttgttgattccacgggagaccatgaggagc 67
|||||||||||| | ||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct: 553 gagaacttcaggctacacccaccggggaccttgttggttccaagggagaccatgaagagc 494
Query: 68 tgcgtcattggcggctacgacgtgctgccaggcacaaggattttcgtgaacgtttgggca 127
||||| || ||||||||||| |||||||| |||||||| || || ||||| |||||||||
Sbjct: 493 tgcgtgatcggcggctacgatgtgctgccgggcacaagaatctttgtgaatgtttgggca 434
Query: 128 atgggaagggatcctagcatctgggatcgcccggaggagttcagtcccgagaggttcgag 187
||||| || ||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 433 atggggagagatcctaccatctgggatcgcccggaggagttcaatcccgagaggttcgac 374
Query: 188 ggaagtcatgtcgactttagaggctccagttttgagctcctcccgttcggctcaggacga 247
|| || ||||| ||||| |||||||||| |||||||| |||||||| ||||| ||||||
Sbjct: 373 ggcagccatgttgacttcagaggctccaactttgagcttctcccgtttggctcgggacga 314
Query: 248 aggtcatgccctgccatcgccatgggtgtcgccaatgtggagcttgtcttggccaacctg 307
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 313 aggtcatgccctgccatcgccatgggtgtcgctaatgtggagcttgccttggccaacctg 254
Query: 308 ttacattgctttgattggcagctccctgaagggatggtggaggaggacatcgatatggaa 367
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 253 ttacattgctttgattggcagctccctgaaggaatgaaggaggaggacatcgatatggaa 194
Query: 368 gaaacagggcagcttgcttttaggaagatggtgcctctttgtcttgtgcctattaagaga 427
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaaactgggcagcttgtttttaggaagatggtgcctctttgtcttgtgcctattaagaga 134
Query: 428 gtataaatgtataattgcactggaaggatgatagactatacgtgcattctcttgacatat 487
|| ||||||||| ||| ||||||| || |||||||| ||||||||| ||||
Sbjct: 133 gt--------ataattgcattgg-aggatgacaggctatacgtacattctctt--aatat 85
Query: 488 attcagttcaaataaactactttaaatatttt 519
||||||||||||| ||||||||| ||||||||
Sbjct: 84 attcagttcaaatgaactactttcaatatttt 53
>gb|CD213473.1|CD213473 HS1_41_D11.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_41_D11_A012 3', mRNA sequence
Length = 676
Score = 589 bits (297), Expect = e-166
Identities = 457/509 (89%), Gaps = 11/509 (2%)
Strand = Plus / Plus
Query: 8 gagaacttcaggatccacccaccggggaccttgttgattccacgggagaccatgaggagc 67
|||||||||||| | ||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct: 179 gagaacttcaggctacacccaccggggaccttgttggttccaagggagaccatgaagagc 238
Query: 68 tgcgtcattggcggctacgacgtgctgccaggcacaaggattttcgtgaacgtttgggca 127
||||| || ||||||||||| |||||||| |||||||| || || ||||| |||||||||
Sbjct: 239 tgcgtgatcggcggctacgatgtgctgccgggcacaagaatctttgtgaatgtttgggca 298
Query: 128 atgggaagggatcctagcatctgggatcgcccggaggagttcagtcccgagaggttcgag 187
||||| || ||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 299 atggggagagatcctaccatctgggatcgcccggaggagttcaatcccgagaggttcgac 358
Query: 188 ggaagtcatgtcgactttagaggctccagttttgagctcctcccgttcggctcaggacga 247
|| || ||||| ||||| |||||||||| |||||||| |||||||| ||||| ||||||
Sbjct: 359 ggcagccatgttgacttcagaggctccaactttgagcttctcccgtttggctcgggacga 418
Query: 248 aggtcatgccctgccatcgccatgggtgtcgccaatgtggagcttgtcttggccaacctg 307
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 419 aggtcatgccctgccatcgccatgggtgtcgctaatgtggagcttgccttggccaacctg 478
Query: 308 ttacattgctttgattggcagctccctgaagggatggtggaggaggacatcgatatggaa 367
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 479 ttacattgctttgattggcagctccctgaaggaatgaaggaggaggacatcgatatggaa 538
Query: 368 gaaacagggcagcttgcttttaggaagatggtgcctctttgtcttgtgcctattaagaga 427
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gaaactgggcagcttgtttttaggaagatggtgcctctttgtcttgtgcctattaagaga 598
Query: 428 gtataaatgtataattgcactggaaggatgatagactatacgtgcattctcttgacatat 487
|| ||||||||| ||| ||||||| || |||||||| ||||||||| ||||
Sbjct: 599 gt--------ataattgcattgg-aggatgacaggctatacgtacattctctt--aatat 647
Query: 488 attcagttcaaataaactactttaaatat 516
||||||||||||| ||||||||| |||||
Sbjct: 648 attcagttcaaatgaactactttcaatat 676
>gb|CL192226.1|CL192226 104_414_10940089_114_32247_001 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10940089, DNA
sequence
Length = 763
Score = 587 bits (296), Expect = e-166
Identities = 459/512 (89%), Gaps = 11/512 (2%)
Strand = Plus / Plus
Query: 8 gagaacttcaggatccacccaccggggaccttgttgattccacgggagaccatgaggagc 67
|||||||||||| | ||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct: 228 gagaacttcaggctacacccaccggggaccttgttggttccaagggagaccatgaagagc 287
Query: 68 tgcgtcattggcggctacgacgtgctgccaggcacaaggattttcgtgaacgtttgggca 127
||||| || ||||||||||| |||||||| |||||||| || || ||||| |||||||||
Sbjct: 288 tgcgtgatcggcggctacgatgtgctgccgggcacaagaatctttgtgaatgtttgggca 347
Query: 128 atgggaagggatcctagcatctgggatcgcccggaggagttcagtcccgagaggttcgag 187
||||| || ||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 348 atggggagagatcctaccatctgggatcgcccggaggagttcaatcccgagaggttcgac 407
Query: 188 ggaagtcatgtcgactttagaggctccagttttgagctcctcccgttcggctcaggacga 247
|| || ||||| ||||| |||||||||| |||||||| |||||||| ||||| ||||||
Sbjct: 408 ggcagccatgttgacttcagaggctccaactttgagcttctcccgtttggctcgggacga 467
Query: 248 aggtcatgccctgccatcgccatgggtgtcgccaatgtggagcttgtcttggccaacctg 307
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 468 aggtcatgccctgccatcgccatgggtgtcgctaatgtggagcttgccttggccaacctg 527
Query: 308 ttacattgctttgattggcagctccctgaagggatggtggaggaggacatcgatatggaa 367
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 528 ttacattgctttgattggcagctccctgaaggaatgaaggaggaggacatcgatatggaa 587
Query: 368 gaaacagggcagcttgcttttaggaagatggtgcctctttgtcttgtgcctattaagaga 427
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaaactgggcagcttgtttttaggaagatggtgcctctttgtcttgtgcctattaagaga 647
Query: 428 gtataaatgtataattgcactggaaggatgatagactatacgtgcattctcttgacatat 487
|| ||||||||| ||| ||||||| || |||||||| ||||||||| ||||
Sbjct: 648 gt--------ataattgcattgg-aggatgacaggctatacgtacattctctt--aatat 696
Query: 488 attcagttcaaataaactactttaaatatttt 519
||||||||||||| ||||||||| |||||||
Sbjct: 697 attcagttcaaatgaactacttttcatatttt 728
>gb|CW299421.1|CW299421 104_782_11463104_148_35687_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11463104, DNA
sequence
Length = 712
Score = 563 bits (284), Expect = e-159
Identities = 455/508 (89%), Gaps = 13/508 (2%)
Strand = Plus / Minus
Query: 12 acttcaggatccacccaccggggaccttgttgattccacgggagaccatgaggagctgcg 71
|||||||| | |||||||||||||||| |||| ||||| |||||||||||| ||||||||
Sbjct: 694 acttcaggctacacccaccggggacct-gttg-ttccaagggagaccatgaagagctgcg 637
Query: 72 tcattggcggctacgacgtgctgccaggcacaaggattttcgtgaacgtttgggcaatgg 131
| || ||||||||||| |||||||| |||||||| || || ||||| |||||||||||||
Sbjct: 636 tgatcggcggctacgatgtgctgccgggcacaagaatctttgtgaatgtttgggcaatgg 577
Query: 132 gaagggatcctagcatctgggatcgcccggaggagttcagtcccgagaggttcgagggaa 191
| || ||||||| |||||||||||||||||||||||||| ||||||||||||||| || |
Sbjct: 576 ggagagatcctaccatctgggatcgcccggaggagttcaatcccgagaggttcgacggca 517
Query: 192 gtcatgtcgactttagaggctccagttttgagctcctcccgttcggctcaggacgaaggt 251
| ||||| ||||| |||||||||| |||||||| |||||||| ||||| ||||||||||
Sbjct: 516 gccatgttgacttcagaggctccaactttgagcttctcccgtttggctcgggacgaaggt 457
Query: 252 catgccctgccatcgccatgggtgtcgccaatgtggagcttgtcttggccaacctgttac 311
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 456 catgccctgccatcgccatgggtgtcgctaatgtggagcttgccttggccaacctgttac 397
Query: 312 attgctttgattggcagctccctgaagggatggtggaggaggacatcgatatggaagaaa 371
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 396 attgctttgattggcagctccctgaaggaatgaaggaggaggacatcgatatggaagaaa 337
Query: 372 cagggcagcttgcttttaggaagatggtgcctctttgtcttgtgcctattaagagagtat 431
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctgggcagcttgtttttaggaagatggtgcctctttgtcttgtgcctattaagagagt-- 279
Query: 432 aaatgtataattgcactggaaggatgatagactatacgtgcattctcttgacatatattc 491
||||||||| ||| ||||||| || |||||||| ||||||||| ||||||||
Sbjct: 278 ------ataattgcattgg-aggatgacaggctatacgtacattctctt--aatatattc 228
Query: 492 agttcaaataaactactttaaatatttt 519
||||||||| ||||||||| ||||||||
Sbjct: 227 agttcaaatgaactactttcaatatttt 200
>gb|CW030265.1|CW030265 104_258_10500151_114_30403 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10500151, DNA
sequence
Length = 812
Score = 428 bits (216), Expect = e-118
Identities = 303/332 (91%)
Strand = Plus / Plus
Query: 8 gagaacttcaggatccacccaccggggaccttgttgattccacgggagaccatgaggagc 67
|||||||||||| | ||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct: 478 gagaacttcaggctacacccaccggggaccttgttggttccaagggagaccatgaagagc 537
Query: 68 tgcgtcattggcggctacgacgtgctgccaggcacaaggattttcgtgaacgtttgggca 127
||||| || ||||||||||| |||||||| |||||||| || || ||||| |||||||||
Sbjct: 538 tgcgtgatcggcggctacgatgtgctgccgggcacaagaatctttgtgaatgtttgggca 597
Query: 128 atgggaagggatcctagcatctgggatcgcccggaggagttcagtcccgagaggttcgag 187
||||| || ||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 598 atggggagagatcctaccatctgggatcgcccggaggagttcaatcccgagaggttcgac 657
Query: 188 ggaagtcatgtcgactttagaggctccagttttgagctcctcccgttcggctcaggacga 247
|| || ||||| ||||| |||||||||| |||||||| |||||||| ||||| ||||||
Sbjct: 658 ggcagccatgttgacttcagaggctccaactttgagcttctcccgtttggctcgggacga 717
Query: 248 aggtcatgccctgccatcgccatgggtgtcgccaatgtggagcttgtcttggccaacctg 307
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 718 aggtcatgccctgccatcgccatgggtgtcgctaatgtggagcttgccttggccaacctg 777
Query: 308 ttacattgctttgattggcagctccctgaagg 339
||||||||||||||||||||||||||||||||
Sbjct: 778 ttacattgctttgattggcagctccctgaagg 809
>gb|AW677294.1|AW677294 DG1_5_H08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 352
Score = 377 bits (190), Expect = e-103
Identities = 300/333 (90%), Gaps = 4/333 (1%)
Strand = Plus / Plus
Query: 53 gagaccatgaggagctgcgtcattggcggctacgacgtgctgccaggcacaaggattttc 112
|||||||||| ||||||||| || ||||||||||| |||||||| |||||||| || ||
Sbjct: 1 gagaccatgaagagctgcgtgatcggcggctacgatgtgctgccgggcacaagaatcttt 60
Query: 113 gtgaacgtttgggcaatgggaagggatcctagcatctgggatcgcccggaggagttcagt 172
||||| |||||||||||||| || ||||||| |||||||||||||||||||||||||| |
Sbjct: 61 gtgaatgtttgggcaatggggagagatcctaccatctgggatcgcccggaggagttcaat 120
Query: 173 cccgagaggttcgagggaagtcatgtcgactttagaggctccagttttgagctcctcccg 232
|||||||||||||| || || ||||| ||||| |||||||||| |||||||| ||||||
Sbjct: 121 cccgagaggttcgacggcagccatgttgacttcagaggctccaactttgagcttctcccg 180
Query: 233 ttcggctcaggacgaaggtcatgccctgccatcgccatgggtgtcgccaatgtggagctt 292
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 181 tttggctcgggacgaaggtcatgccctgccatcgccatgggtgtcgctaatgtggagctt 240
Query: 293 gtcttggccaacctgttacattgctttgattggca-gctccctgaag-ggatggtggagg 350
| ||||||||||||||||||||||||||||||||| ||||||||||| | ||| |||||
Sbjct: 241 gccttggccaacctgttacattgctttgattggcangctccctgaagcgaatgaaggagg 300
Query: 351 aggacatcgat--atggaagaaacagggcagct 381
||||||||||| ||||||||||| ||||||||
Sbjct: 301 aggacatcgataaatggaagaaactgggcagct 333
>gb|AW923233.1|AW923233 DG1_50_A08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 277
Score = 317 bits (160), Expect = 6e-085
Identities = 211/228 (92%)
Strand = Plus / Plus
Query: 206 agaggctccagttttgagctcctcccgttcggctcaggacgaaggtcatgccctgccatc 265
|||||||||| |||||||| |||||||| ||||| ||| ||||||||||||||||||||
Sbjct: 27 agaggctccaactttgagcttctcccgtttggctcgggaggaaggtcatgccctgccatc 86
Query: 266 gccatgggtgtcgccaatgtggagcttgtcttggccaacctgttacattgctttgattgg 325
||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 87 gccatgggtgtcgttaatgtggagcttgccttggccaccctgttacattgctttgattgg 146
Query: 326 cagctccctgaagggatggtggaggaggacatcgatatggaagaaacagggcagcttgct 385
||||||| | |||| ||| ||||||||||||||||||||||||||| |||||||||| |
Sbjct: 147 cagctccttcaaggaatgaaggaggaggacatcgatatggaagaaactgggcagcttgtt 206
Query: 386 tttaggaagatggtgcctctttgtcttgtgcctattaagagagtataa 433
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tttaggaagatggtgcctctttgtcttgtgcctattaagagagtataa 254
>gb|CB925902.1|CB925902 ABA1_30_H12.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_30_H12_A012 3', mRNA sequence
Length = 216
Score = 206 bits (104), Expect = 2e-051
Identities = 189/216 (87%), Gaps = 11/216 (5%)
Strand = Plus / Plus
Query: 304 cctgttacattgctttgattggcagctccctgaagggatggtggaggaggacatcgatat 363
|||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||
Sbjct: 4 cctgttacattgctttgattggcagctccctgaaggaatgaaggaggaggccatcgatat 63
Query: 364 ggaagaaacagggcagcttgcttttaggaagatggtgcctctttgtcttgtgcctattaa 423
||||||||| |||||||||| ||||||||||| ||| |||||||||||||||||||||||
Sbjct: 64 ggaagaaactgggcagcttgtttttaggaagacggtccctctttgtcttgtgcctattaa 123
Query: 424 gagagtataaatgtataattgcactggaaggatgatagactatacgtgcattctcttgac 483
|||||||| |||| || |||| |||||| || |||||||| ||||||||| |
Sbjct: 124 gagagtat--------aattccattgga-ggatgacaggctatacgtacattctcttaa- 173
Query: 484 atatattcagttcaaataaactactttaaatatttt 519
|||||||||||||||| ||||||||| ||||||||
Sbjct: 174 -tatattcagttcaaatgaactactttcaatatttt 208
>gb|CW181787.1|CW181787 104_597_11163701_116_36655_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163701, DNA
sequence
Length = 426
Score = 172 bits (87), Expect = 2e-041
Identities = 156/179 (87%)
Strand = Plus / Plus
Query: 8 gagaacttcaggatccacccaccggggaccttgttgattccacgggagaccatgaggagc 67
||||||||| || | ||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct: 224 gagaacttctggctacacccaccggggaccttgttggttccaagggagaccatgaagagc 283
Query: 68 tgcgtcattggcggctacgacgtgctgccaggcacaaggattttcgtgaacgtttgggca 127
||||| || ||||||||| | |||||||| ||||| || || || ||||| |||||||||
Sbjct: 284 tgcgtgatcggcggctaccatgtgctgccgggcacgagaatctttgtgaatgtttgggca 343
Query: 128 atgggaagggatcctagcatctgggatcgcccggaggagttcagtcccgagaggttcga 186
||||| || ||||||| | |||||||||||||||||||||||| || | ||||||||||
Sbjct: 344 atggggagagatcctaccctctgggatcgcccggaggagttcaatcgccagaggttcga 402
>gb|CF756907.1|CF756907 DSAF1_11_B05.g1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_11_B05_A011 3', mRNA sequence
Length = 213
Score = 69.9 bits (35), Expect = 2e-010
Identities = 72/82 (87%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 438 ataattgcactggaaggatgatagactatacgtgcattctcttgacatatattcagttca 497
||||||||| |||| |||||| || |||||||| ||||||||| | |||||||||||||
Sbjct: 1 ataattgcattgga-ggatgacaggctatacgtacattctcttaa--tatattcagttca 57
Query: 498 aataaactactttaaatatttt 519
||| ||||||||| ||||||||
Sbjct: 58 aatgaactactttcaatatttt 79
>gb|CW181788.1|CW181788 104_597_11163701_148_36656_031 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163701, DNA
sequence
Length = 660
Score = 65.9 bits (33), Expect = 4e-009
Identities = 60/68 (88%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 452 aggatgatagactatacgtgcattctcttgacatatattcagttcaaataaactacttta 511
||||||| || |||||||| ||||||||| | |||||||||||||||| |||||||||
Sbjct: 659 aggatgacaggctatacgtacattctcttaa--tatattcagttcaaatgaactactttc 602
Query: 512 aatatttt 519
||||||||
Sbjct: 601 aatatttt 594
>gb|CL192227.1|CL192227 104_414_10940089_116_32251_001 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10940089, DNA
sequence
Length = 671
Score = 56.0 bits (28), Expect = 3e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 484 atatattcagttcaaataaactactttaaatatttt 519
||||||||||||||||| ||||||||| ||||||||
Sbjct: 622 atatattcagttcaaatgaactactttcaatatttt 587
>gb|BZ779926.1|BZ779926 ii35e07.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii35e07, DNA sequence
Length = 688
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 157 cccggaggagttcagtcccgagaggttcgag 187
||||||||||||||| || ||||||||||||
Sbjct: 289 cccggaggagttcaggccggagaggttcgag 259
>gb|CW188052.1|CW188052 104_607_11172812_116_36728_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172812, DNA
sequence
Length = 667
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 157 cccggaggagttcagtcccgagaggttcgag 187
||||||||||||||| || ||||||||||||
Sbjct: 343 cccggaggagttcaggccggagaggttcgag 313
>gb|AW679544.1|AW679544 WS1_29_D01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 556
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 157 cccggaggagttcagtcccgagaggttcgag 187
||||||||||||||| || ||||||||||||
Sbjct: 133 cccggaggagttcaggccggagaggttcgag 163
>gb|BG933110.1|BG933110 WS1_29_D01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 507
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 157 cccggaggagttcagtcccgagaggttcgag 187
||||||||||||||| || ||||||||||||
Sbjct: 357 cccggaggagttcaggccggagaggttcgag 387
>gb|CB924446.1|CB924446 ABA1_21_F08.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_21_F08_A012 3', mRNA sequence
Length = 623
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 157 cccggaggagttcagtcccgagaggttcgag 187
||||||||||||||| || ||||||||||||
Sbjct: 134 cccggaggagttcaggccggagaggttcgag 164
>gb|CD205908.1|CD205908 HS1_19_B08.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_19_B08_A012 3', mRNA sequence
Length = 556
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 157 cccggaggagttcagtcccgagaggttcgag 187
||||||||||||||| || ||||||||||||
Sbjct: 161 cccggaggagttcaggccggagaggttcgag 191
>gb|CD212860.1|CD212860 HS1_17_H04.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_17_H04_A012 3', mRNA sequence
Length = 540
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 157 cccggaggagttcagtcccgagaggttcgag 187
||||||||||||||| || ||||||||||||
Sbjct: 199 cccggaggagttcaggccggagaggttcgag 229
>gb|CD424723.1|CD424723 SA1_7_D01.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_7_D01_A002 3', mRNA sequence
Length = 529
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 157 cccggaggagttcagtcccgagaggttcgag 187
||||||||||||||| || ||||||||||||
Sbjct: 13 cccggaggagttcaggccggagaggttcgag 43
>gb|CD427023.1|CD427023 SA1_17_C08.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_17_C08_A002 3', mRNA sequence
Length = 679
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 157 cccggaggagttcagtcccgagaggttcgag 187
||||||||||||||| || ||||||||||||
Sbjct: 291 cccggaggagttcaggccggagaggttcgag 321
>gb|CF770824.1|CF770824 DSBF1_10_B04.g1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_10_B04_A010 3', mRNA sequence
Length = 576
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 157 cccggaggagttcagtcccgagaggttcgag 187
||||||||||||||| || ||||||||||||
Sbjct: 44 cccggaggagttcaggccggagaggttcgag 74
>gb|CN147616.1|CN147616 WOUND1_50_G10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_50_G10_A002 5', mRNA sequence
Length = 789
Score = 46.1 bits (23), Expect = 0.003
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 157 cccggaggagttcagtcccgagaggttcgag 187
||||||||||||||| || ||||||||||||
Sbjct: 482 cccggaggagttcaggccggagaggttcgag 512
>gb|CW132069.1|CW132069 104_515_11116013_148_34794_027 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116013, DNA
sequence
Length = 595
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 158 ccggaggagttcagtcccgagaggttcg 185
|||||||||||||| || ||||||||||
Sbjct: 371 ccggaggagttcaggccggagaggttcg 398
>gb|CW203827.1|CW203827 104_631_11186219_116_37092_038 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186219, DNA
sequence
Length = 677
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 311 cattgctttgattggcagct 330
||||||||||||||||||||
Sbjct: 47 cattgctttgattggcagct 28
>gb|CW264501.1|CW264501 104_733_11231332_116_35254_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231332, DNA
sequence
Length = 658
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 158 ccggaggagttcagtcccgagaggttcg 185
|||||||||||||| || ||||||||||
Sbjct: 596 ccggaggagttcaggccggagaggttcg 569
>gb|CW423487.1|CW423487 fsbb001f133f09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f133f09, DNA
sequence
Length = 663
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 311 cattgctttgattggcagct 330
||||||||||||||||||||
Sbjct: 199 cattgctttgattggcagct 180
>gb|CN126076.1|CN126076 RHOH1_15_B06.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_15_B06_A002 3', mRNA sequence
Length = 816
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 161 gaggagttcagtcccgagaggttcgagg 188
||||||||||| || |||||||||||||
Sbjct: 378 gaggagttcaggccggagaggttcgagg 405
>gb|CX608661.1|CX608661 ANR1_40_A09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_40_A09_A002 3', mRNA sequence
Length = 587
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 161 gaggagttcagtcccgagaggttcgagg 188
||||||||||| || |||||||||||||
Sbjct: 146 gaggagttcaggccggagaggttcgagg 173
>gb|CX610538.1|CX610538 ANR1_19_G09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_19_G09_A002 3', mRNA sequence
Length = 743
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 161 gaggagttcagtcccgagaggttcgagg 188
||||||||||| || |||||||||||||
Sbjct: 316 gaggagttcaggccggagaggttcgagg 343
>gb|CX611043.1|CX611043 ANR1_22_G05.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_22_G05_A002 3', mRNA sequence
Length = 777
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 161 gaggagttcagtcccgagaggttcgagg 188
||||||||||| || |||||||||||||
Sbjct: 340 gaggagttcaggccggagaggttcgagg 367
>gb|CX611163.1|CX611163 ANR1_23_B06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_23_B06_A002 3', mRNA sequence
Length = 778
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 161 gaggagttcagtcccgagaggttcgagg 188
||||||||||| || |||||||||||||
Sbjct: 399 gaggagttcaggccggagaggttcgagg 426
>gb|CX622143.1|CX622143 GABR1_62_F09.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_62_F09_A002 3', mRNA sequence
Length = 735
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 161 gaggagttcagtcccgagaggttcgagg 188
||||||||||| || |||||||||||||
Sbjct: 276 gaggagttcaggccggagaggttcgagg 303
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 131,370
Number of Sequences: 832831
Number of extensions: 131370
Number of successful extensions: 37348
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37301
Number of HSP's gapped (non-prelim): 40
length of query: 541
length of database: 491,359,669
effective HSP length: 19
effective length of query: 522
effective length of database: 475,535,880
effective search space: 248229729360
effective search space used: 248229729360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)