BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2762998.2.1
(1036 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG947743.1|BG947743 IP1_8_E11.g1_A002 Immature pannicle ... 799 0.0
gb|CF485548.1|CF485548 POL1_32_E07.b1_A002 Pollen Sorghum b... 793 0.0
gb|BM327663.1|BM327663 PIC1_8_G09.g1_A002 Pathogen-infected... 470 e-130
gb|CW311746.1|CW311746 104_801_11470392_116_36280_090 Sorgh... 319 3e-085
gb|CW088797.1|CW088797 104_433_10948332_116_32576_034 Sorgh... 52 1e-004
gb|BE359249.1|BE359249 DG1_39_F09.g1_A002 Dark Grown 1 (DG1... 46 0.006
gb|BE359395.1|BE359395 DG1_40_F06.g1_A002 Dark Grown 1 (DG1... 46 0.006
gb|BG239921.1|BG239921 OV1_30_G05.g1_A002 Ovary 1 (OV1) Sor... 40 0.40
gb|BI139654.1|BI139654 IP1_47_D08.g1_A002 Immature pannicle... 40 0.40
gb|BM326688.1|BM326688 PIC1_1_C07.g1_A002 Pathogen-infected... 40 0.40
gb|BM327897.1|BM327897 PIC1_18_G10.g1_A002 Pathogen-infecte... 40 0.40
gb|BM328221.1|BM328221 PIC1_22_E06.g1_A002 Pathogen-infecte... 40 0.40
gb|CB926266.1|CB926266 ABA1_7_D05.b1_A012 Abscisic acid-tre... 40 0.40
gb|CF074097.1|CF074097 FE1_21_G09.b1_A002 Iron-deficient se... 40 0.40
gb|CF489369.1|CF489369 POL1_57_E02.b1_A002 Pollen Sorghum b... 40 0.40
gb|CN127274.1|CN127274 RHOH1_22_B10.b1_A002 Acid- and alkal... 40 0.40
>gb|BG947743.1|BG947743 IP1_8_E11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 604
Score = 799 bits (403), Expect = 0.0
Identities = 451/467 (96%)
Strand = Plus / Minus
Query: 263 acaaagcttatccctgcaattaaccaaaagaaccggtcgagatggccttcattcagattg 322
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 acaaagcttatcccagcaattaaccaaaagaaccggtcgagatggccttcattcagattg 411
Query: 323 tcagggatccatccaggatctcctccctgagttgtaatgtacgacaccaatgtcagtatg 382
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 410 tcagggatccatccaggatctcctccctgagttgtaatgcacgacaccaacgtcagtatg 351
Query: 383 atggagcttatatagtttcccagtgagactgtaataagtgcaagtgcactacataaactc 442
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 350 atggagcttatatagcttcccagtgagactgtaataagtgcaaatgcactacataaactc 291
Query: 443 ctcatggcatctggggcctgatcgtaaaagaactcaacttgaccaatacaagtaaacacc 502
||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||
Sbjct: 290 ctcatggcatctggggcctcatcgtaaaagaactcgacttgacctatacaagtaaacacc 231
Query: 503 tcagcagcgcccaccaagaaatattgtggtatttgccaaagaatgctcattggaacagca 562
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tcagcagcacccaccaagaaatattgtggtatttgccaaagaatgctcattggaacagca 171
Query: 563 gccttctcatgaatgagaccttcagacctggcaatctctaaacgcttcaactcaactaga 622
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 170 gccttctcatgaataagaccttcagacctggcaatctctaaacgcttcaactcaacaaga 111
Query: 623 gctgcagataccatcgcgagaatggacaggactaatccaattcccatccgctgtagctca 682
||||||||||||||||| ||||| |||||| |||||||||||||||||||||| ||||||
Sbjct: 110 gctgcagataccatcgcaagaattgacagggctaatccaattcccatccgctggagctca 51
Query: 683 gaaaaacccttctcccttccagtgaattttctagctagtggcaccag 729
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 50 gaaaaacccttctcccttccagtgaattttctagctactggcaccag 4
Score = 52.0 bits (26), Expect = 1e-004
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 171 aatcacattacaatgagttcacataaatataatc 204
||||||||||||| ||||||||||||||||||||
Sbjct: 559 aatcacattacaa-gagttcacataaatataatc 527
>gb|CF485548.1|CF485548 POL1_32_E07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_32_E07_A002 3', mRNA sequence
Length = 555
Score = 793 bits (400), Expect = 0.0
Identities = 448/464 (96%)
Strand = Plus / Minus
Query: 263 acaaagcttatccctgcaattaaccaaaagaaccggtcgagatggccttcattcagattg 322
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 acaaagcttatcccagcaattaaccaaaagaaccggtcgagatggccttcattcagattg 405
Query: 323 tcagggatccatccaggatctcctccctgagttgtaatgtacgacaccaatgtcagtatg 382
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 404 tcagggatccatccaggatctcctccctgagttgtaatgcacgacaccaacgtcagtatg 345
Query: 383 atggagcttatatagtttcccagtgagactgtaataagtgcaagtgcactacataaactc 442
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 344 atggagcttatatagcttcccagtgagactgtaataagtgcaaatgcactacataaactc 285
Query: 443 ctcatggcatctggggcctgatcgtaaaagaactcaacttgaccaatacaagtaaacacc 502
||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||
Sbjct: 284 ctcatggcatctggggcctcatcgtaaaagaactcgacttgacctatacaagtaaacacc 225
Query: 503 tcagcagcgcccaccaagaaatattgtggtatttgccaaagaatgctcattggaacagca 562
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tcagcagcacccaccaagaaatattgtggtatttgccaaagaatgctcattggaacagca 165
Query: 563 gccttctcatgaatgagaccttcagacctggcaatctctaaacgcttcaactcaactaga 622
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 164 gccttctcatgaataagaccttcagacctggcaatctctaaacgcttcaactcaacaaga 105
Query: 623 gctgcagataccatcgcgagaatggacaggactaatccaattcccatccgctgtagctca 682
||||||||||||||||| ||||| |||||| |||||||||||||||||||||| ||||||
Sbjct: 104 gctgcagataccatcgcaagaattgacagggctaatccaattcccatccgctggagctca 45
Query: 683 gaaaaacccttctcccttccagtgaattttctagctagtggcac 726
||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 44 gaaaaacccttctcccttccagtgaattttctagctactggcac 1
Score = 52.0 bits (26), Expect = 1e-004
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 171 aatcacattacaatgagttcacataaatataatc 204
||||||||||||| ||||||||||||||||||||
Sbjct: 553 aatcacattacaa-gagttcacataaatataatc 521
>gb|BM327663.1|BM327663 PIC1_8_G09.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 398
Score = 470 bits (237), Expect = e-130
Identities = 264/273 (96%)
Strand = Plus / Minus
Query: 263 acaaagcttatccctgcaattaaccaaaagaaccggtcgagatggccttcattcagattg 322
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 acaaagcttatcccagcaattaaccaaaagaaccggtcgagatggccttcattcagattg 214
Query: 323 tcagggatccatccaggatctcctccctgagttgtaatgtacgacaccaatgtcagtatg 382
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 213 tcagggatccatccaggatctcctccctgagttgtaatgcacgacaccaacgtcagtatg 154
Query: 383 atggagcttatatagtttcccagtgagactgtaataagtgcaagtgcactacataaactc 442
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 153 atggagcttatatagcttcccagtgagactgtaataagtgcaaatgcactacataaactc 94
Query: 443 ctcatggcatctggggcctgatcgtaaaagaactcaacttgaccaatacaagtaaacacc 502
||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||
Sbjct: 93 ctcatggcatctggggcctcatcgtaaaagaactcgacttgacctatacaagtaaacacc 34
Query: 503 tcagcagcgcccaccaagaaatattgtggtatt 535
|||||||| ||||||||||||||||||||||||
Sbjct: 33 tcagcagcacccaccaagaaatattgtggtatt 1
Score = 52.0 bits (26), Expect = 1e-004
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 171 aatcacattacaatgagttcacataaatataatc 204
||||||||||||| ||||||||||||||||||||
Sbjct: 362 aatcacattacaa-gagttcacataaatataatc 330
>gb|CW311746.1|CW311746 104_801_11470392_116_36280_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11470392, DNA
sequence
Length = 719
Score = 319 bits (161), Expect = 3e-085
Identities = 179/185 (96%)
Strand = Plus / Minus
Query: 263 acaaagcttatccctgcaattaaccaaaagaaccggtcgagatggccttcattcagattg 322
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 acaaagcttatcccagcaattaaccaaaagaaccggtcgagatggccttcattcagattg 126
Query: 323 tcagggatccatccaggatctcctccctgagttgtaatgtacgacaccaatgtcagtatg 382
|||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||
Sbjct: 125 tcagggatccatccaggatctcctccgtgagttgtaatgcacgacaccaacgtcagtatg 66
Query: 383 atggagcttatatagtttcccagtgagactgtaataagtgcaagtgcactacataaactc 442
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 65 atggagcttatatagcttcccagtgagactgtaataagtgcaaatgcactacataaactc 6
Query: 443 ctcat 447
|||||
Sbjct: 5 ctcat 1
Score = 52.0 bits (26), Expect = 1e-004
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 171 aatcacattacaatgagttcacataaatataatc 204
||||||||||||| ||||||||||||||||||||
Sbjct: 274 aatcacattacaa-gagttcacataaatataatc 242
>gb|CW088797.1|CW088797 104_433_10948332_116_32576_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948332, DNA
sequence
Length = 714
Score = 52.0 bits (26), Expect = 1e-004
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 171 aatcacattacaatgagttcacataaatataatc 204
||||||||||||| ||||||||||||||||||||
Sbjct: 86 aatcacattacaa-gagttcacataaatataatc 54
>gb|BE359249.1|BE359249 DG1_39_F09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 680
Score = 46.1 bits (23), Expect = 0.006
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 274 ccctgcaattaaccaaaagaaccggtcgagatggccttcattcagattgtcagggatcca 333
|||||| || ||||| || || || |||||| | |||||||| ||||| |||||||||||
Sbjct: 465 ccctgccatcaaccagaataaacgatcgagacgaccttcattgagattatcagggatcca 406
Query: 334 tcc 336
|||
Sbjct: 405 tcc 403
>gb|BE359395.1|BE359395 DG1_40_F06.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 250
Score = 46.1 bits (23), Expect = 0.006
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 274 ccctgcaattaaccaaaagaaccggtcgagatggccttcattcagattgtcagggatcca 333
|||||| || ||||| || || || |||||| | |||||||| ||||| |||||||||||
Sbjct: 244 ccctgccatcaaccagaataaacgatcgagacgaccttcattgagattatcagggatcca 185
Query: 334 tcc 336
|||
Sbjct: 184 tcc 182
>gb|BG239921.1|BG239921 OV1_30_G05.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 357
Score = 40.1 bits (20), Expect = 0.40
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 440 ctcctcatggcatctggggcctgatcgtaaaagaactcaa 479
||||||||||| ||||| | ||| || |||||||||||||
Sbjct: 69 ctcctcatggcgtctggtgactggtcataaaagaactcaa 30
>gb|BI139654.1|BI139654 IP1_47_D08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 536
Score = 40.1 bits (20), Expect = 0.40
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 440 ctcctcatggcatctggggcctgatcgtaaaagaactcaa 479
||||||||||| ||||| | ||| || |||||||||||||
Sbjct: 107 ctcctcatggcgtctggtgactggtcataaaagaactcaa 68
>gb|BM326688.1|BM326688 PIC1_1_C07.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 515
Score = 40.1 bits (20), Expect = 0.40
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 440 ctcctcatggcatctggggcctgatcgtaaaagaactcaa 479
||||||||||| ||||| | ||| || |||||||||||||
Sbjct: 61 ctcctcatggcgtctggtgactggtcataaaagaactcaa 22
>gb|BM327897.1|BM327897 PIC1_18_G10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 635
Score = 40.1 bits (20), Expect = 0.40
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 440 ctcctcatggcatctggggcctgatcgtaaaagaactcaa 479
||||||||||| ||||| | ||| || |||||||||||||
Sbjct: 181 ctcctcatggcgtctggtgactggtcataaaagaactcaa 142
>gb|BM328221.1|BM328221 PIC1_22_E06.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 560
Score = 40.1 bits (20), Expect = 0.40
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 440 ctcctcatggcatctggggcctgatcgtaaaagaactcaa 479
||||||||||| ||||| | ||| || |||||||||||||
Sbjct: 106 ctcctcatggcgtctggtgactggtcataaaagaactcaa 67
>gb|CB926266.1|CB926266 ABA1_7_D05.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_7_D05_A012 3', mRNA sequence
Length = 589
Score = 40.1 bits (20), Expect = 0.40
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 440 ctcctcatggcatctggggcctgatcgtaaaagaactcaa 479
||||||||||| ||||| | ||| || |||||||||||||
Sbjct: 136 ctcctcatggcgtctggtgactggtcataaaagaactcaa 97
>gb|CF074097.1|CF074097 FE1_21_G09.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_21_G09_A002 3', mRNA sequence
Length = 587
Score = 40.1 bits (20), Expect = 0.40
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 440 ctcctcatggcatctggggcctgatcgtaaaagaactcaa 479
||||||||||| ||||| | ||| || |||||||||||||
Sbjct: 134 ctcctcatggcgtctggtgactggtcataaaagaactcaa 95
>gb|CF489369.1|CF489369 POL1_57_E02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_57_E02_A002 3', mRNA sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.40
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 440 ctcctcatggcatctggggcctgatcgtaaaagaactcaa 479
||||||||||| ||||| | ||| || |||||||||||||
Sbjct: 175 ctcctcatggcgtctggtgactggtcataaaagaactcaa 136
>gb|CN127274.1|CN127274 RHOH1_22_B10.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_B10_A002 3', mRNA sequence
Length = 738
Score = 40.1 bits (20), Expect = 0.40
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 440 ctcctcatggcatctggggcctgatcgtaaaagaactcaa 479
||||||||||| ||||||| ||| || ||||| |||||||
Sbjct: 310 ctcctcatggcgtctggggactggtcataaaaaaactcaa 271
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 196,922
Number of Sequences: 832831
Number of extensions: 196922
Number of successful extensions: 49062
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49022
Number of HSP's gapped (non-prelim): 35
length of query: 1036
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1016
effective length of database: 474,703,049
effective search space: 482298297784
effective search space used: 482298297784
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)