BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2762970.2.1
(578 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN139218.1|CN139218 OX1_16_F05.g1_A002 Oxidatively-stres... 666 0.0
gb|CN152404.1|CN152404 WOUND1_81_G07.g1_A002 Wounded leaves... 656 0.0
gb|CW114801.1|CW114801 104_489_11106191_116_34571_086 Sorgh... 357 7e-097
gb|BG159096.1|BG159096 RHIZ2_17_H01.b1_A003 Rhizome2 (RHIZ2... 351 4e-095
gb|BF705329.1|BF705329 RHIZ2_3_F09.g1_A003 Rhizome2 (RHIZ2)... 289 1e-076
gb|CW371663.1|CW371663 fsbb001f047d21f0 Sorghum methylation... 258 5e-067
gb|CD226009.1|CD226009 CCC1_42_G09.g1_A007 Callus culture/c... 240 1e-061
gb|CD225901.1|CD225901 CCC1_42_G09.b1_A007 Callus culture/c... 228 4e-058
gb|CD203987.1|CD203987 HS1_3_A09.b1_A012 Heat-shocked seedl... 216 2e-054
gb|CW302724.1|CW302724 104_787_11464867_148_35670_080 Sorgh... 196 2e-048
gb|CW328842.1|CW328842 104_825_11479522_148_36001_045 Sorgh... 196 2e-048
gb|BE594092.1|BE594092 WS1_102_B02.b1_A002 Water-stressed 1... 196 2e-048
gb|CN136233.1|CN136233 OX1_41_D06.g1_A002 Oxidatively-stres... 190 1e-046
gb|CW179652.1|CW179652 104_593_11160212_148_36628_066 Sorgh... 170 9e-041
gb|BZ368104.1|BZ368104 id11d06.g1 WGS-SbicolorF (JM107 adap... 149 3e-034
gb|CW114802.1|CW114802 104_489_11106191_148_34567_086 Sorgh... 143 2e-032
gb|AW923989.1|AW923989 WS1_32_F04.b1_A002 Water-stressed 1 ... 129 3e-028
gb|CD208110.1|CD208110 HS1_31_F12.b1_A012 Heat-shocked seed... 129 3e-028
gb|CW066393.1|CW066393 104_313_10523660_114_30148 Sorghum m... 123 2e-026
gb|CW111471.1|CW111471 104_484_11104330_148_34526_033 Sorgh... 123 2e-026
gb|CW058681.1|CW058681 104_301_10518874_114_30160 Sorghum m... 121 7e-026
gb|AW678076.1|AW678076 WS1_13_D08.b1_A002 Water-stressed 1 ... 115 5e-024
gb|AW680972.1|AW680972 WS1_9_F07.b1_A002 Water-stressed 1 (... 115 5e-024
gb|CN127419.1|CN127419 RHOH1_22_H08.g3_A002 Acid- and alkal... 107 1e-021
gb|CN136159.1|CN136159 OX1_41_D06.b1_A002 Oxidatively-stres... 107 1e-021
gb|CW414214.1|CW414214 fsbb001f113l24f0 Sorghum methylation... 105 4e-021
gb|CF072762.1|CF072762 FE1_25_E08.g1_A002 Iron-deficient se... 105 4e-021
gb|BF705455.1|BF705455 RHIZ2_4_B08.g1_A003 Rhizome2 (RHIZ2)... 103 2e-020
gb|BE365282.1|BE365282 PI1_26_C04.b1_A002 Pathogen induced ... 101 7e-020
gb|CD211296.1|CD211296 HS1_59_A04.b1_A012 Heat-shocked seed... 100 3e-019
gb|CD230640.1|CD230640 SS1_47_C05.b1_A012 Salt-stressed see... 100 3e-019
gb|BG050436.1|BG050436 FM1_69_B07.g1_A003 Floral-Induced Me... 98 1e-018
gb|CW066394.1|CW066394 104_313_10523660_115_30149 Sorghum m... 96 4e-018
gb|BF481458.1|BF481458 FM1_19_D09.g1_A003 Floral-Induced Me... 96 4e-018
gb|CW127764.1|CW127764 104_509_11113620_116_34747_048 Sorgh... 94 2e-017
gb|CD204059.1|CD204059 HS1_3_H07.g1_A012 Heat-shocked seedl... 94 2e-017
gb|CN135804.1|CN135804 OX1_39_C01.b1_A002 Oxidatively-stres... 94 2e-017
gb|CN149685.1|CN149685 WOUND1_64_F12.b1_A002 Wounded leaves... 94 2e-017
gb|BG103085.1|BG103085 RHIZ2_18_A02.g1_A003 Rhizome2 (RHIZ2... 88 1e-015
gb|CD233790.1|CD233790 SS1_4_A02.b1_A012 Salt-stressed seed... 88 1e-015
gb|CW179961.1|CW179961 104_594_11160385_148_36634_009 Sorgh... 86 4e-015
gb|CW371581.1|CW371581 fsbb001f047b17f0 Sorghum methylation... 86 4e-015
gb|CW393711.1|CW393711 fsbb001f080o11f0 Sorghum methylation... 86 4e-015
gb|CW454568.1|CW454568 fsbb001f199b07f0 Sorghum methylation... 86 4e-015
gb|CF483805.1|CF483805 POL1_24_G05.g1_A002 Pollen Sorghum b... 86 4e-015
gb|CX610694.1|CX610694 ANR1_20_F08.b1_A002 Anaerobic roots ... 86 4e-015
gb|CW302461.1|CW302461 104_786_11464731_116_35664_006 Sorgh... 82 6e-014
gb|AW680635.1|AW680635 WS1_6_F02.b1_A002 Water-stressed 1 (... 78 1e-012
gb|CD206549.1|CD206549 HS1_23_G12.g1_A012 Heat-shocked seed... 72 6e-011
gb|CD235366.1|CD235366 SS1_29_B08.b1_A012 Salt-stressed see... 72 6e-011
gb|CF072002.1|CF072002 FE1_20_E10.b1_A002 Iron-deficient se... 64 2e-008
gb|CW438702.1|CW438702 fsbb001f156h12k0 Sorghum methylation... 60 2e-007
gb|AW678156.1|AW678156 WS1_13_D08.g1_A002 Water-stressed 1 ... 60 2e-007
gb|BE592421.1|BE592421 WS1_94_E08.g1_A002 Water-stressed 1 ... 60 2e-007
gb|BE592545.1|BE592545 WS1_94_E08.b1_A002 Water-stressed 1 ... 60 2e-007
gb|BE593587.1|BE593587 WS1_101_B06.g1_A002 Water-stressed 1... 60 2e-007
gb|BE593778.1|BE593778 WS1_102_B02.g1_A002 Water-stressed 1... 60 2e-007
gb|BE594012.1|BE594012 WS1_101_B06.b1_A002 Water-stressed 1... 60 2e-007
gb|BG052912.1|BG052912 RHIZ2_15_G12.g1_A003 Rhizome2 (RHIZ2... 60 2e-007
gb|BG103534.1|BG103534 RHIZ2_37_F11.g1_A003 Rhizome2 (RHIZ2... 60 2e-007
gb|CB925242.1|CB925242 ABA1_32_B04.b1_A012 Abscisic acid-tr... 60 2e-007
gb|CB926949.1|CB926949 ABA1_11_H05.b1_A012 Abscisic acid-tr... 60 2e-007
gb|CB927649.1|CB927649 ABA1_27_F05.b1_A012 Abscisic acid-tr... 60 2e-007
gb|CB928092.1|CB928092 ABA1_36_B05.b1_A012 Abscisic acid-tr... 60 2e-007
gb|CB928225.1|CB928225 ABA1_37_E04.b1_A012 Abscisic acid-tr... 60 2e-007
gb|CB928520.1|CB928520 ABA1_16_E12.b1_A012 Abscisic acid-tr... 60 2e-007
gb|CD203868.1|CD203868 HS1_2_D11.b1_A012 Heat-shocked seedl... 60 2e-007
gb|CD204839.1|CD204839 HS1_10_A01.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD204972.1|CD204972 HS1_11_E03.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD205116.1|CD205116 HS1_12_G03.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD205132.1|CD205132 HS1_12_C07.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD205145.1|CD205145 HS1_12_H12.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD205244.1|CD205244 HS1_13_G04.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD205443.1|CD205443 HS1_14_B02.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD205456.1|CD205456 HS1_14_G10.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD205754.1|CD205754 HS1_18_H09.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD205765.1|CD205765 HS1_18_G09.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD206177.1|CD206177 HS1_21_E04.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD206515.1|CD206515 HS1_23_H12.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD206527.1|CD206527 HS1_23_G12.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD208074.1|CD208074 HS1_31_D07.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD208473.1|CD208473 HS1_38_B09.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD208631.1|CD208631 HS1_39_H06.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD209398.1|CD209398 HS1_42_D05.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD209518.1|CD209518 HS1_43_G08.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD209522.1|CD209522 HS1_43_C04.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD209817.1|CD209817 HS1_55_F06.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD209840.1|CD209840 HS1_55_C09.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD210111.1|CD210111 HS1_57_G08.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD210426.1|CD210426 HS1_51_C02.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD210530.1|CD210530 HS1_48_C08.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD210700.1|CD210700 HS1_49_D04.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD210830.1|CD210830 HS1_66_D06.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD210985.1|CD210985 HS1_58_D08.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD211429.1|CD211429 HS1_60_C02.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD212019.1|CD212019 HS1_68_D06.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD212412.1|CD212412 HS1_5_D02.b1_A012 Heat-shocked seedl... 60 2e-007
gb|CD212714.1|CD212714 HS1_16_A09.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD213330.1|CD213330 HS1_40_D06.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD213478.1|CD213478 HS1_41_D03.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD213640.1|CD213640 HS1_52_E12.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD213743.1|CD213743 HS1_53_B02.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD213892.1|CD213892 HS1_69_F11.b1_A012 Heat-shocked seed... 60 2e-007
gb|CD230983.1|CD230983 SS1_7_H02.b1_A012 Salt-stressed seed... 60 2e-007
gb|CD232141.1|CD232141 SS1_38_G11.b1_A012 Salt-stressed see... 60 2e-007
gb|CD234378.1|CD234378 SS1_27_G05.b1_A012 Salt-stressed see... 60 2e-007
gb|CD235858.1|CD235858 SS1_24_H11.b1_A012 Salt-stressed see... 60 2e-007
gb|CD236550.1|CD236550 SS1_35_F08.b1_A012 Salt-stressed see... 60 2e-007
gb|CD424420.1|CD424420 SA1_5_D06.b1_A002 Salicylic acid-tre... 60 2e-007
gb|CD426067.1|CD426067 SA1_16_H05.b1_A002 Salicylic acid-tr... 60 2e-007
gb|CD426170.1|CD426170 SA1_19_H11.b1_A002 Salicylic acid-tr... 60 2e-007
gb|CD426172.1|CD426172 SA1_19_A05.b1_A002 Salicylic acid-tr... 60 2e-007
gb|CD427192.1|CD427192 SA1_18_A08.b1_A002 Salicylic acid-tr... 60 2e-007
gb|CD427244.1|CD427244 SA1_18_D04.b1_A002 Salicylic acid-tr... 60 2e-007
gb|CD427685.1|CD427685 SA1_38_F06.b1_A002 Salicylic acid-tr... 60 2e-007
gb|CD427688.1|CD427688 SA1_38_E11.b1_A002 Salicylic acid-tr... 60 2e-007
gb|CD461415.1|CD461415 SA1_22_D07.b2_A002 Salicylic acid-tr... 60 2e-007
gb|CF070753.1|CF070753 FE1_4_D02.b1_A002 Iron-deficient see... 60 2e-007
gb|CF072984.1|CF072984 FE1_27_H03.b1_A002 Iron-deficient se... 60 2e-007
gb|CF428153.1|CF428153 PH1_13_A07.b1_A002 Phosphorous-defic... 60 2e-007
gb|CF489219.1|CF489219 POL1_55_C02.g1_A002 Pollen Sorghum b... 60 2e-007
gb|CN132270.1|CN132270 OX1_5_D06.b1_A002 Oxidatively-stress... 60 2e-007
gb|CN136764.1|CN136764 OX1_53_E03.b1_A002 Oxidatively-stres... 60 2e-007
gb|CN145015.1|CN145015 WOUND1_26_F10.b2_A002 Wounded leaves... 60 2e-007
gb|CN150453.1|CN150453 WOUND1_69_F09.b1_A002 Wounded leaves... 60 2e-007
gb|CN152275.1|CN152275 WOUND1_81_B08.b1_A002 Wounded leaves... 60 2e-007
gb|CX617837.1|CX617837 GABR1_36_C12.b1_A002 GA- or brassino... 60 2e-007
gb|CL169112.1|CL169112 104_367_10812400_148_31786_256 Sorgh... 58 9e-007
gb|CD213806.1|CD213806 HS1_53_H10.b1_A012 Heat-shocked seed... 54 1e-005
gb|CW413732.1|CW413732 fsbb001f113a10f0 Sorghum methylation... 52 6e-005
gb|CD205295.1|CD205295 HS1_13_B07.b1_A012 Heat-shocked seed... 52 6e-005
gb|CD424718.1|CD424718 SA1_7_H05.b1_A002 Salicylic acid-tre... 52 6e-005
gb|CD427220.1|CD427220 SA1_18_F06.b1_A002 Salicylic acid-tr... 46 0.004
gb|CL185490.1|CL185490 104_399_10899571_114_32390_070 Sorgh... 44 0.014
gb|CW065402.1|CW065402 104_312_10523127_114_30128 Sorghum m... 44 0.014
gb|CW072607.1|CW072607 104_325_10592365_114_30535 Sorghum m... 44 0.014
gb|CW371657.1|CW371657 fsbb001f047d17f0 Sorghum methylation... 44 0.014
gb|CN144856.1|CN144856 WOUND1_25_H03.b2_A002 Wounded leaves... 44 0.014
gb|CD204013.1|CD204013 HS1_3_F03.b1_A012 Heat-shocked seedl... 42 0.056
gb|CD233916.1|CD233916 SS1_5_D10.b1_A012 Salt-stressed seed... 42 0.056
gb|AW679852.1|AW679852 WS1_32_F04.g1_A002 Water-stressed 1 ... 40 0.22
>gb|CN139218.1|CN139218 OX1_16_F05.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_16_F05_A002 5', mRNA sequence
Length = 838
Score = 666 bits (336), Expect = 0.0
Identities = 496/547 (90%), Gaps = 3/547 (0%)
Strand = Plus / Plus
Query: 34 gatccttcgtgtcaagttcaccatgggc-ctgttcgagaacccttaccccgactctagcc 92
|||||| |||||||||||||||||||| || || ||||||||||||||||| ||||||
Sbjct: 1 gatcctccgtgtcaagttcaccatggggtctatttgagaacccttaccccgatgctagcc 60
Query: 93 tcgccggcgagctcgggaagcaagaacaccgggaactggcgcgcgaagccgtcaggaaat 152
| ||||| || |||||||||||||||||||||| |||| ||||||||||||||||| |
Sbjct: 61 ttgccggtgaaatcgggaagcaagaacaccgggagttggcacgcgaagccgtcaggaagt 120
Query: 153 ccctggttctcctgaagaacggcaagtcctcctacgctccgttgctgcccctcccgaaga 212
|||||||||| ||||||||||| || ||||||| ||||| |||||||||||||||||||
Sbjct: 121 ccctggttcttctgaagaacgggaaatcctcctctgctcccttgctgcccctcccgaaga 180
Query: 213 aggccggcaagatcctggtcgccggcagccacgccaacgacctgggcaaccagtgcgggg 272
||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||| |
Sbjct: 181 aggccggtaagatcctggtcgccggtagccacgccaacgacttgggcaaccagtgcggag 240
Query: 273 ggtggacgatcacgtggcaaggaagcagcggcaacactactgccggcacgacgatcctct 332
| ||||||||||| ||||||||||||||||||||||| || | ||||||||||||||||
Sbjct: 241 gatggacgatcacatggcaaggaagcagcggcaacaccaccgttggcacgacgatcctct 300
Query: 333 ccgggatcgaggccaccgtggaccccagcacgcaggtggtgtactcggagagcccggaca 392
|||| |||||||| |||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 301 ccggaatcgaggcgaccgtggatcccagcacgcaggtggtgtactcggagaacccggaca 360
Query: 393 gcggcgtgctggccgacaagtacgactacgcgatcgtggtggtcggggagccgccatacg 452
|||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 361 gcggcgtgctcggcgacaagtacgactacgcgatcgtggtggtcggggagccgccgtacg 420
Query: 453 cggagacgttcggcgacaacctgaacctgacgatcccggcgcccgggccgagcgtnancc 512
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct: 421 cggagacgttcggcgacaacctgaacctgacgatcccggcgccggggccgagcgtgatcc 480
Query: 513 agtcggtgtgcgganncg-ccaagtgcgttgtggtcctcatctccggcaggcngctggtg 571
||||||||||| | || |||||||||| ||||| ||||||||||| |||| ||||||
Sbjct: 481 agtcggtgtgc-aaggcgaccaagtgcgtggtggtgctcatctccgggaggcccctggtg 539
Query: 572 gtggagc 578
|||||||
Sbjct: 540 gtggagc 546
>gb|CN152404.1|CN152404 WOUND1_81_G07.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_81_G07_A002 5', mRNA sequence
Length = 841
Score = 656 bits (331), Expect = 0.0
Identities = 493/546 (90%), Gaps = 2/546 (0%)
Strand = Plus / Plus
Query: 33 ggatccttcgtgtcaagttcaccatgggcctgttcgagaacccttaccccgactctagcc 92
||||||| |||||||||||| ||||||| || || ||||||||||||||||| ||||||
Sbjct: 8 ggatcctccgtgtcaagttc-ccatgggtctatttgagaacccttaccccgatgctagcc 66
Query: 93 tcgccggcgagctcgggaagcaagaacaccgggaactggcgcgcgaagccgtcaggaaat 152
| ||||| || |||||||||||||||||||||| |||| ||||||||||||||||| |
Sbjct: 67 ttgccggtgaaatcgggaagcaagaacaccgggagttggcacgcgaagccgtcaggaagt 126
Query: 153 ccctggttctcctgaagaacggcaagtcctcctacgctccgttgctgcccctcccgaaga 212
|||||||||| ||||||||||| || ||||||| ||||| |||||||||||||||||||
Sbjct: 127 ccctggttcttctgaagaacgggaaatcctcctctgctcccttgctgcccctcccgaaga 186
Query: 213 aggccggcaagatcctggtcgccggcagccacgccaacgacctgggcaaccagtgcgggg 272
||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||| |
Sbjct: 187 aggccggtaagatcctggtcgccggtagccacgccaacgacttgggcaaccagtgcggag 246
Query: 273 ggtggacgatcacgtggcaaggaagcagcggcaacactactgccggcacgacgatcctct 332
| ||||||||||| ||||||||||||||||||||||| || | ||||||||||||||||
Sbjct: 247 gatggacgatcacatggcaaggaagcagcggcaacaccaccgttggcacgacgatcctct 306
Query: 333 ccgggatcgaggccaccgtggaccccagcacgcaggtggtgtactcggagagcccggaca 392
|||| |||||||| |||||||| |||||||||||||||||| ||||||||| ||||||||
Sbjct: 307 ccggaatcgaggcgaccgtggatcccagcacgcaggtggtgcactcggagaacccggaca 366
Query: 393 gcggcgtgctggccgacaagtacgactacgcgatcgtggtggtcggggagccgccatacg 452
|||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 367 gcggcgtgctcggcgacaagtacgactacgcgatcgtggtggtcggggagccgccgtacg 426
Query: 453 cggagacgttcggcgacaacctgaacctgacgatcccggcgcccgggccgagcgtnancc 512
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct: 427 cggagacgttcggcgacaacctgaacctgacgatcccggcgccggggccgagcgtgatcc 486
Query: 513 agtcggtgtgcgganncgccaagtgcgttgtggtcctcatctccggcaggcngctggtgg 572
||||||||||| | || | ||||||| ||||| ||||||||||| |||| |||||||
Sbjct: 487 agtcggtgtgc-aaggcgaccagtgcgtggtggtgctcatctccgggaggcccctggtgg 545
Query: 573 tggagc 578
||||||
Sbjct: 546 tggagc 551
>gb|CW114801.1|CW114801 104_489_11106191_116_34571_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11106191, DNA
sequence
Length = 581
Score = 357 bits (180), Expect = 7e-097
Identities = 243/263 (92%), Gaps = 2/263 (0%)
Strand = Plus / Minus
Query: 317 ggcacgacgatcctctccgggatcgaggccaccgtggaccccagcacgcaggtggtgtac 376
|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct: 424 ggcacgacgatcctctccggaatcgaggcgaccgtggatcccagcacgcaggtggtgtac 365
Query: 377 tcggagagcccggacagcggcgtgctggccgacaagtacgactacgcgatcgtggtggtc 436
||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 364 tcggagaacccggacagcggcgtgctcggcgacaagtacgactacgcgatcgtggtggtc 305
Query: 437 ggggagccgccatacgcggagacgttcggcgacaacctgaacctgacgatcccggcgccc 496
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggggagccgccgtacgcggagacgttcggcgacaacctgaacctgacgatcccggcgccg 245
Query: 497 gggccgagcgtnanccagtcggtgtgcgganncg-ccaagtgcgttgtggtcctcatctc 555
||||||||||| | ||||||||||||| | || |||||||||| ||||| ||||||||
Sbjct: 244 gggccgagcgtgatccagtcggtgtgc-aaggcgaccaagtgcgtggtggtgctcatctc 186
Query: 556 cggcaggcngctggtggtggagc 578
||| |||| |||||||||||||
Sbjct: 185 cgggaggcccctggtggtggagc 163
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 281 atcacgtggcaaggaagcagcggcaacac 309
||||| |||||||||||||||||||||||
Sbjct: 581 atcacatggcaaggaagcagcggcaacac 553
>gb|BG159096.1|BG159096 RHIZ2_17_H01.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 425
Score = 351 bits (177), Expect = 4e-095
Identities = 258/285 (90%)
Strand = Plus / Plus
Query: 1 ccccatgagcagaatcgacgacgccgtctacaggatccttcgtgtcaagttcaccatggg 60
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 140 ccccatgagcagaatcgacgatgccgtctacaggatcctccgtgtcaagttcaccatggg 199
Query: 61 cctgttcgagaacccttaccccgactctagcctcgccggcgagctcgggaagcaagaaca 120
|| || ||||||||||||||||| ||||||| ||||| || ||||||||||||||||
Sbjct: 200 tctatttgagaacccttaccccgatgctagccttgccggtgaaatcgggaagcaagaaca 259
Query: 121 ccgggaactggcgcgcgaagccgtcaggaaatccctggttctcctgaagaacggcaagtc 180
|||||| |||| ||||||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct: 260 ccgggagttggcacgcgaagccgtcaggaagtccctggttcttctgaagaacgggaaatc 319
Query: 181 ctcctacgctccgttgctgcccctcccgaagaaggccggcaagatcctggtcgccggcag 240
||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 320 ctcctcttctcccttgctgcccctcccgaagaaggccggtaagatcctggtcgccggtag 379
Query: 241 ccacgccaacgacctgggcaaccagtgcggggggtggacgatcac 285
||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 380 ccacgccaacgacttgggcaaccagtgcggaggatggacgatcac 424
>gb|BF705329.1|BF705329 RHIZ2_3_F09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 614
Score = 289 bits (146), Expect = 1e-076
Identities = 203/221 (91%), Gaps = 2/221 (0%)
Strand = Plus / Plus
Query: 359 agcacgcaggtggtgtactcggagagcccggacagcggcgtgctggccgacaagtacgac 418
||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct: 1 agcacgcaggtggtgtactcggagaacccggacagcggcgtgctcggcgacaagtacgac 60
Query: 419 tacgcgatcgtggtggtcggggagccgccatacgcggagacgttcggcgacaacctgaac 478
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 tacgcgatcgtggtggtgggtgagccgccgtacgcggagacgttcggcgacaacctgaac 120
Query: 479 ctgacgatcccggcgcccgggccgagcgtnanccagtcggtgtgcgganncg-ccaagtg 537
||||||||||||||||||||||||||||| | ||||||||||||| | || |||||||
Sbjct: 121 ctgacgatcccggcgcccgggccgagcgtgatccagtcggtgtgc-aaggcgaccaagtg 179
Query: 538 cgttgtggtcctcatctccggcaggcngctggtggtggagc 578
||| ||||| ||||||||||| |||| |||||||||||||
Sbjct: 180 cgtggtggtgctcatctccgggaggcccctggtggtggagc 220
>gb|CW371663.1|CW371663 fsbb001f047d21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f047d21, DNA
sequence
Length = 716
Score = 258 bits (130), Expect = 5e-067
Identities = 178/194 (91%)
Strand = Plus / Plus
Query: 116 gaacaccgggaactggcgcgcgaagccgtcaggaaatccctggttctcctgaagaacggc 175
||||||||||| |||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 292 gaacaccgggagttggcacgcgaagccgtcaggaagtccctggttcttctgaagaacggg 351
Query: 176 aagtcctcctacgctccgttgctgcccctcccgaagaaggccggcaagatcctggtcgcc 235
|| ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 352 aaatcctcctctgctcccttgctgcccctcccgaagaaggccggtaagatcctggtcgcc 411
Query: 236 ggcagccacgccaacgacctgggcaaccagtgcggggggtggacgatcacgtggcaagga 295
|| ||||||||||||||| |||||||||||||||| || ||||||||||| |||||||||
Sbjct: 412 ggtagccacgccaacgacttgggcaaccagtgcggaggatggacgatcacatggcaagga 471
Query: 296 agcagcggcaacac 309
||||||||||||||
Sbjct: 472 agcagcggcaacac 485
Score = 157 bits (79), Expect = 1e-036
Identities = 97/103 (94%)
Strand = Plus / Plus
Query: 317 ggcacgacgatcctctccgggatcgaggccaccgtggaccccagcacgcaggtggtgtac 376
|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct: 614 ggcacgacgatcctctccggaatcgaggcgaccgtggatcccagcacgcaggtggtgtac 673
Query: 377 tcggagagcccggacagcggcgtgctggccgacaagtacgact 419
||||||| |||||||||||||||||| | ||||||||||||||
Sbjct: 674 tcggagaacccggacagcggcgtgctcggcgacaagtacgact 716
Score = 143 bits (72), Expect = 2e-032
Identities = 105/116 (90%)
Strand = Plus / Plus
Query: 1 ccccatgagcagaatcgacgacgccgtctacaggatccttcgtgtcaagttcaccatggg 60
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 89 ccccatgagcagaatcgacgatgccgtctacaggatcctccgtgtcaagttcaccatggg 148
Query: 61 cctgttcgagaacccttaccccgactctagcctcgccggcgagctcgggaagcaag 116
|| || ||||||||||||||||| ||||||| ||||| || ||||||||||||
Sbjct: 149 tctatttgagaacccttaccccgatgctagccttgccggtgaaatcgggaagcaag 204
>gb|CD226009.1|CD226009 CCC1_42_G09.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_42_G09_A007 5', mRNA sequence
Length = 649
Score = 240 bits (121), Expect = 1e-061
Identities = 187/209 (89%)
Strand = Plus / Plus
Query: 1 ccccatgagcagaatcgacgacgccgtctacaggatccttcgtgtcaagttcaccatggg 60
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ccccatgagcagaatcgacgatgccgtctacaggatcctccgtgtcaagttcaccatggg 500
Query: 61 cctgttcgagaacccttaccccgactctagcctcgccggcgagctcgggaagcaagaaca 120
|| || ||||||||||||||||| ||||||| ||||| || ||||||||||||||||
Sbjct: 501 tctatttgagaacccttaccccgatgctagccttgccggtgaaatcgggaagcaagaaca 560
Query: 121 ccgggaactggcgcgcgaagccgtcaggaaatccctggttctcctgaagaacggcaagtc 180
|||||| |||| ||||||||||||||||| |||||||||| ||||||||||| || ||
Sbjct: 561 ccgggagttggcacgcgaagccgtcaggaagtccctggttcctctgaagaacgggaaatc 620
Query: 181 ctcctacgctccgttgctgcccctcccga 209
||||| ||||| ||||||||||||||||
Sbjct: 621 ctcctctgctcccttgctgcccctcccga 649
>gb|CD225901.1|CD225901 CCC1_42_G09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_42_G09_A007 3', mRNA sequence
Length = 629
Score = 228 bits (115), Expect = 4e-058
Identities = 160/174 (91%), Gaps = 2/174 (1%)
Strand = Plus / Plus
Query: 406 cgacaagtacgactacgcgatcgtggtggtcggggagccgccatacgcggagacgttcgg 465
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2 cgacaagtacgactacgcgatcgtggtggtcggggagccgccgtacgcggagacgttcgg 61
Query: 466 cgacaacctgaacctgacgatcccggcgcccgggccgagcgtnanccagtcggtgtgcgg 525
|||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct: 62 cgacaacctgaacctgacgatcccggcgccggggccgagcgtgatccagtcggtgtgc-a 120
Query: 526 anncg-ccaagtgcgttgtggtcctcatctccggcaggcngctggtggtggagc 578
| || |||||||||| ||||| ||||||||||| |||| |||||||||||||
Sbjct: 121 aggcgaccaagtgcgtggtggtgctcatctccgggaggcccctggtggtggagc 174
>gb|CD203987.1|CD203987 HS1_3_A09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_3_A09_A012 3', mRNA sequence
Length = 688
Score = 216 bits (109), Expect = 2e-054
Identities = 157/172 (91%), Gaps = 2/172 (1%)
Strand = Plus / Plus
Query: 408 acaagtacgactacgcgatcgtggtggtcggggagccgccatacgcggagacgttcggcg 467
|||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct: 1 acaagtacgactacgcgatcgtggtggtgggtgagccgccgtacgcggagacgttcggcg 60
Query: 468 acaacctgaacctgacgatcccggcgcccgggccgagcgtnanccagtcggtgtgcggan 527
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
Sbjct: 61 acaacctgaacctgacgatcccggcgcccgggccgagcgtgatccagtcggtgtgc-aag 119
Query: 528 ncg-ccaagtgcgttgtggtcctcatctccggcaggcngctggtggtggagc 578
|| |||||||||| ||||| ||||||||||| |||| |||||||||||||
Sbjct: 120 gcgaccaagtgcgtggtggtgctcatctccgggaggcccctggtggtggagc 171
>gb|CW302724.1|CW302724 104_787_11464867_148_35670_080 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464867, DNA
sequence
Length = 640
Score = 196 bits (99), Expect = 2e-048
Identities = 234/279 (83%)
Strand = Plus / Plus
Query: 5 atgagcagaatcgacgacgccgtctacaggatccttcgtgtcaagttcaccatgggcctg 64
|||||||| |||||||||||||| ||||| || || |||||||||||||||||||||
Sbjct: 336 atgagcaggatcgacgacgccgtgacgaggattctgcgcgtcaagttcaccatgggcctg 395
Query: 65 ttcgagaacccttaccccgactctagcctcgccggcgagctcgggaagcaagaacaccgg 124
||||||||||| || ||| |||||||||||| | |||| |||||||| || ||| ||
Sbjct: 396 ttcgagaaccccatgccggaccctagcctcgccgaccagctggggaagcaggagcacagg 455
Query: 125 gaactggcgcgcgaagccgtcaggaaatccctggttctcctgaagaacggcaagtcctcc 184
|| |||||||| || || || ||||| || ||||| ||||| |||||||||||| | |
Sbjct: 456 gacctggcgcgggaggcggtgaggaagtcgctggtgctcctcaagaacggcaagccaggc 515
Query: 185 tacgctccgttgctgcccctcccgaagaaggccggcaagatcctggtcgccggcagccac 244
|||| ||| |||||||||| || |||||||||| |||||||||||||||||| ||||||
Sbjct: 516 gacgcgccgctgctgcccctgcccaagaaggccgccaagatcctggtcgccgggagccac 575
Query: 245 gccaacgacctgggcaaccagtgcggggggtggacgatc 283
||| || ||||||| |||||||||| ||||||||||||
Sbjct: 576 gccgacaacctgggttaccagtgcggcgggtggacgatc 614
>gb|CW328842.1|CW328842 104_825_11479522_148_36001_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11479522, DNA
sequence
Length = 448
Score = 196 bits (99), Expect = 2e-048
Identities = 144/158 (91%), Gaps = 2/158 (1%)
Strand = Plus / Plus
Query: 422 gcgatcgtggtggtcggggagccgccatacgcggagacgttcggcgacaacctgaacctg 481
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 gcgatcgtggtggtcggggagccgccgtacgcggagacgttcggcgacaacctgaacctg 60
Query: 482 acgatcccggcgcccgggccgagcgtnanccagtcggtgtgcgganncg-ccaagtgcgt 540
|||||||||||||| ||||||||||| | ||||||||||||| | || ||||||||||
Sbjct: 61 acgatcccggcgccggggccgagcgtgatccagtcggtgtgc-aaggcgaccaagtgcgt 119
Query: 541 tgtggtcctcatctccggcaggcngctggtggtggagc 578
||||| ||||||||||| |||| |||||||||||||
Sbjct: 120 ggtggtgctcatctccgggaggcccctggtggtggagc 157
>gb|BE594092.1|BE594092 WS1_102_B02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 493
Score = 196 bits (99), Expect = 2e-048
Identities = 234/279 (83%)
Strand = Plus / Plus
Query: 5 atgagcagaatcgacgacgccgtctacaggatccttcgtgtcaagttcaccatgggcctg 64
|||||||| |||||||||||||| ||||| || || |||||||||||||||||||||
Sbjct: 162 atgagcaggatcgacgacgccgtgacgaggattctgcgcgtcaagttcaccatgggcctg 221
Query: 65 ttcgagaacccttaccccgactctagcctcgccggcgagctcgggaagcaagaacaccgg 124
||||||||||| || ||| |||||||||||| | |||| |||||||| || ||| ||
Sbjct: 222 ttcgagaaccccatgccggaccctagcctcgccgaccagctggggaagcaggagcacagg 281
Query: 125 gaactggcgcgcgaagccgtcaggaaatccctggttctcctgaagaacggcaagtcctcc 184
|| |||||||| || || || ||||| || ||||| ||||| |||||||||||| | |
Sbjct: 282 gacctggcgcgggaggcggtgaggaagtcgctggtgctcctcaagaacggcaagccaggc 341
Query: 185 tacgctccgttgctgcccctcccgaagaaggccggcaagatcctggtcgccggcagccac 244
|||| ||| |||||||||| || |||||||||| |||||||||||||||||| ||||||
Sbjct: 342 gacgcgccgctgctgcccctgcccaagaaggccgccaagatcctggtcgccgggagccac 401
Query: 245 gccaacgacctgggcaaccagtgcggggggtggacgatc 283
||| || ||||||| |||||||||| ||||||||||||
Sbjct: 402 gccgacaacctgggttaccagtgcggcgggtggacgatc 440
>gb|CN136233.1|CN136233 OX1_41_D06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_41_D06_A002 5', mRNA sequence
Length = 850
Score = 190 bits (96), Expect = 1e-046
Identities = 233/279 (83%)
Strand = Plus / Plus
Query: 5 atgagcagaatcgacgacgccgtctacaggatccttcgtgtcaagttcaccatgggcctg 64
|||||||| |||||||||||||| ||||| || || |||||||||||||||||||||
Sbjct: 541 atgagcaggatcgacgacgccgtgacgaggattctgcgcgtcaagttcaccatgggcctg 600
Query: 65 ttcgagaacccttaccccgactctagcctcgccggcgagctcgggaagcaagaacaccgg 124
||||||||||| || ||| |||||||||||| | |||| |||||||| || ||| ||
Sbjct: 601 ttcgagaaccccatgccggaccctagcctcgccgaccagctggggaagcaggagcacagg 660
Query: 125 gaactggcgcgcgaagccgtcaggaaatccctggttctcctgaagaacggcaagtcctcc 184
|| |||||||| || || || ||||| || ||||| ||||| |||||||||||| | |
Sbjct: 661 gacctggcgcgggaggcggtgaggaagtcgctggtgctcctcaagaacggcaagccaggc 720
Query: 185 tacgctccgttgctgcccctcccgaagaaggccggcaagatcctggtcgccggcagccac 244
|||| ||| |||||||||| || |||||||||| |||||||||||||||||| ||||||
Sbjct: 721 gacgcgccgctgctgcccctgcccaagaaggccgccaagatcctggtcgccgggagccac 780
Query: 245 gccaacgacctgggcaaccagtgcggggggtggacgatc 283
||| || ||||| | |||||||||| ||||||||||||
Sbjct: 781 gccgacaacctgngttaccagtgcggcgggtggacgatc 819
>gb|CW179652.1|CW179652 104_593_11160212_148_36628_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11160212, DNA
sequence
Length = 444
Score = 170 bits (86), Expect = 9e-041
Identities = 131/145 (90%), Gaps = 2/145 (1%)
Strand = Plus / Plus
Query: 435 tcggggagccgccatacgcggagacgttcggcgacaacctgaacctgacgatcccggcgc 494
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcggggagccgccgtacgcggagacgttcggcgacaacctgaacctgacgatcccggcgc 60
Query: 495 ccgggccgagcgtnanccagtcggtgtgcgganncg-ccaagtgcgttgtggtcctcatc 553
| ||||||||||| | ||||||||||||| | || |||||||||| ||||| ||||||
Sbjct: 61 cggggccgagcgtgatccagtcggtgtgc-aaggcgaccaagtgcgtggtggtgctcatc 119
Query: 554 tccggcaggcngctggtggtggagc 578
||||| |||| |||||||||||||
Sbjct: 120 tccgggaggcccctggtggtggagc 144
>gb|BZ368104.1|BZ368104 id11d06.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone id11d06 5', DNA sequence
Length = 494
Score = 149 bits (75), Expect = 3e-034
Identities = 201/243 (82%)
Strand = Plus / Plus
Query: 5 atgagcagaatcgacgacgccgtctacaggatccttcgtgtcaagttcaccatgggcctg 64
|||||||| |||||||||||||| ||||| || || |||||||||||||||||||||
Sbjct: 250 atgagcaggatcgacgacgccgtgacgaggattctgcgcgtcaagttcaccatgggcctg 309
Query: 65 ttcgagaacccttaccccgactctagcctcgccggcgagctcgggaagcaagaacaccgg 124
||||||||||| || ||| |||||||||||| | |||| |||||||| || ||| ||
Sbjct: 310 ttcgagaaccccatgccggaccctagcctcgccgaccagctggggaagcaggagcacagg 369
Query: 125 gaactggcgcgcgaagccgtcaggaaatccctggttctcctgaagaacggcaagtcctcc 184
|| |||||||| || || ||||| || ||||| ||||| |||||||||||| | |
Sbjct: 370 gacctggcgcgggagcgggtgaggaagtcgctggtgctcctcaagaacggcaagccaggc 429
Query: 185 tacgctccgttgctgcccctcccgaagaaggccggcaagatcctggtcgccggcagccac 244
|||| ||| |||||||||| || |||||||||| |||||||||||||||||| ||||||
Sbjct: 430 gacgcgccgctgctgcccctgcccaagaaggccgccaagatcctggtcgccgggagccac 489
Query: 245 gcc 247
|||
Sbjct: 490 gcc 492
>gb|CW114802.1|CW114802 104_489_11106191_148_34567_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11106191, DNA
sequence
Length = 608
Score = 143 bits (72), Expect = 2e-032
Identities = 105/116 (90%)
Strand = Plus / Plus
Query: 1 ccccatgagcagaatcgacgacgccgtctacaggatccttcgtgtcaagttcaccatggg 60
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 425 ccccatgagcagaatcgacgatgccgtctacaggatcctccgtgtcaagttcaccatggg 484
Query: 61 cctgttcgagaacccttaccccgactctagcctcgccggcgagctcgggaagcaag 116
|| || ||||||||||||||||| ||||||| ||||| || ||||||||||||
Sbjct: 485 tctatttgagaacccttaccccgatgctagccttgccggtgaaatcgggaagcaag 540
>gb|AW923989.1|AW923989 WS1_32_F04.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 269
Score = 129 bits (65), Expect = 3e-028
Identities = 149/177 (84%)
Strand = Plus / Plus
Query: 107 gggaagcaagaacaccgggaactggcgcgcgaagccgtcaggaaatccctggttctcctg 166
|||||||| || ||| |||| |||||||| || || || ||||| || ||||| |||||
Sbjct: 10 gggaagcaggagcacagggacctggcgcgggaggcggtgaggaagtcgctggtgctcctc 69
Query: 167 aagaacggcaagtcctcctacgctccgttgctgcccctcccgaagaaggccggcaagatc 226
|||||||||||| | | |||| ||| |||||||||| || |||||||||| |||||||
Sbjct: 70 aagaacggcaagccaggcgacgcgccgctgctgcccctgcccaagaaggccgccaagatc 129
Query: 227 ctggtcgccggcagccacgccaacgacctgggcaaccagtgcggggggtggacgatc 283
||||||||||| ||||||||| || ||||||| |||||||||| ||||||||||||
Sbjct: 130 ctggtcgccgggagccacgccgacaacctgggttaccagtgcggcgggtggacgatc 186
>gb|CD208110.1|CD208110 HS1_31_F12.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_31_F12_A012 3', mRNA sequence
Length = 721
Score = 129 bits (65), Expect = 3e-028
Identities = 149/177 (84%)
Strand = Plus / Plus
Query: 107 gggaagcaagaacaccgggaactggcgcgcgaagccgtcaggaaatccctggttctcctg 166
|||||||| || ||| |||| |||||||| || || || ||||| || ||||| |||||
Sbjct: 2 gggaagcaggagcacagggacctggcgcgggaggcggtgaggaagtcgctggtgctcctc 61
Query: 167 aagaacggcaagtcctcctacgctccgttgctgcccctcccgaagaaggccggcaagatc 226
|||||||||||| | | |||| ||| |||||||||| || |||||||||| |||||||
Sbjct: 62 aagaacggcaagccaggcgacgcgccgctgctgcccctgcccaagaaggccgccaagatc 121
Query: 227 ctggtcgccggcagccacgccaacgacctgggcaaccagtgcggggggtggacgatc 283
||||||||||| ||||||||| || ||||||| |||||||||| ||||||||||||
Sbjct: 122 ctggtcgccgggagccacgccgacaacctgggttaccagtgcggcgggtggacgatc 178
Score = 60.0 bits (30), Expect = 2e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 464 ggcgacaacctgaacctgacgatcccggcgcccgggccgagc 505
||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 362 ggcgacagcctgaacctgacgatcccggaccccgggccgagc 403
>gb|CW066393.1|CW066393 104_313_10523660_114_30148 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523660, DNA
sequence
Length = 463
Score = 123 bits (62), Expect = 2e-026
Identities = 146/174 (83%)
Strand = Plus / Plus
Query: 5 atgagcagaatcgacgacgccgtctacaggatccttcgtgtcaagttcaccatgggcctg 64
|||||| | ||||||||||||||| | | ||||| || ||||||||||||||||||||
Sbjct: 230 atgagccgcatcgacgacgccgtccgccgcatcctgcgcgtcaagttcaccatgggcctc 289
Query: 65 ttcgagaacccttaccccgactctagcctcgccggcgagctcgggaagcaagaacaccgg 124
||||| ||||| ||| ||||| | ||||||| |||||||||||| ||||| || |||||
Sbjct: 290 ttcgacaacccctacgccgacaccagcctcgtcggcgagctcggcaagcaggagcaccgc 349
Query: 125 gaactggcgcgcgaagccgtcaggaaatccctggttctcctgaagaacggcaag 178
|| ||||||||||| ||||| | || ||||| || ||||| ||||||||||||
Sbjct: 350 gacctggcgcgcgaggccgtgcgcaagtccctcgtcctcctcaagaacggcaag 403
>gb|CW111471.1|CW111471 104_484_11104330_148_34526_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104330, DNA
sequence
Length = 572
Score = 123 bits (62), Expect = 2e-026
Identities = 146/174 (83%)
Strand = Plus / Minus
Query: 5 atgagcagaatcgacgacgccgtctacaggatccttcgtgtcaagttcaccatgggcctg 64
|||||| | ||||||||||||||| | | ||||| || ||||||||||||||||||||
Sbjct: 476 atgagccgcatcgacgacgccgtccgccgcatcctgcgcgtcaagttcaccatgggcctc 417
Query: 65 ttcgagaacccttaccccgactctagcctcgccggcgagctcgggaagcaagaacaccgg 124
||||| ||||| ||| ||||| | ||||||| |||||||||||| ||||| || |||||
Sbjct: 416 ttcgacaacccctacgccgacaccagcctcgtcggcgagctcggcaagcaggagcaccgc 357
Query: 125 gaactggcgcgcgaagccgtcaggaaatccctggttctcctgaagaacggcaag 178
|| ||||||||||| ||||| | || ||||| || ||||| ||||||||||||
Sbjct: 356 gacctggcgcgcgaggccgtgcgcaagtccctcgtcctcctcaagaacggcaag 303
Score = 46.1 bits (23), Expect = 0.004
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 225 tcctggtcgccggcagccacgccaacgacctgggcaaccagtgcggggggtggacgatca 284
||||||||||||| |||||||| |||| || || | ||||||||| || ||||| ||||
Sbjct: 247 tcctggtcgccggaagccacgctgacgatctcggtagccagtgcggcggctggaccatca 188
Query: 285 cgtggca 291
| |||||
Sbjct: 187 cctggca 181
>gb|CW058681.1|CW058681 104_301_10518874_114_30160 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10518874, DNA
sequence
Length = 547
Score = 121 bits (61), Expect = 7e-026
Identities = 139/165 (84%)
Strand = Plus / Plus
Query: 14 atcgacgacgccgtctacaggatccttcgtgtcaagttcaccatgggcctgttcgagaac 73
||||||||||||||| | | ||||| || |||||||||||||||||||| ||||| |||
Sbjct: 142 atcgacgacgccgtccgccgcatcctgcgcgtcaagttcaccatgggcctcttcgacaac 201
Query: 74 ccttaccccgactctagcctcgccggcgagctcgggaagcaagaacaccgggaactggcg 133
|| ||| ||||| | ||||||| |||||||||||| ||||| || ||||| || ||||||
Sbjct: 202 ccctacgccgacaccagcctcgtcggcgagctcggcaagcaggagcaccgcgacctggcg 261
Query: 134 cgcgaagccgtcaggaaatccctggttctcctgaagaacggcaag 178
||||| ||||| | || ||||| || ||||| ||||||||||||
Sbjct: 262 cgcgaggccgtgcgcaagtcccttgtcctcctcaagaacggcaag 306
Score = 69.9 bits (35), Expect = 2e-010
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 225 tcctggtcgccggcagccacgccaacgacctgggcaaccagtgcggggggtggacgatca 284
||||||||||||||||||||| | ||||||| |||| ||||||||| || ||||| ||||
Sbjct: 362 tcctggtcgccggcagccacggcgacgacctcggcagccagtgcggcggctggaccatca 421
Query: 285 cgtggca 291
| |||||
Sbjct: 422 cctggca 428
>gb|AW678076.1|AW678076 WS1_13_D08.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 461
Score = 115 bits (58), Expect = 5e-024
Identities = 145/174 (83%)
Strand = Plus / Plus
Query: 5 atgagcagaatcgacgacgccgtctacaggatccttcgtgtcaagttcaccatgggcctg 64
|||||||| |||||||||||||| ||||| || || |||||||||||||||||||||
Sbjct: 258 atgagcaggatcgacgacgccgtgacgaggattctgcgcgtcaagttcaccatgggcctg 317
Query: 65 ttcgagaacccttaccccgactctagcctcgccggcgagctcgggaagcaagaacaccgg 124
||||||||||| || ||| |||||||||||| | |||| |||||||| || ||| ||
Sbjct: 318 ttcgagaaccccatgccggaccctagcctcgccgaccagctggggaagcaggagcacagg 377
Query: 125 gaactggcgcgcgaagccgtcaggaaatccctggttctcctgaagaacggcaag 178
|| |||||||| || || || ||||| || ||||| ||||| ||||||||||||
Sbjct: 378 gacctggcgcgggaggcggtgaggaagtcgctggtgctcctcaagaacggcaag 431
>gb|AW680972.1|AW680972 WS1_9_F07.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 500
Score = 115 bits (58), Expect = 5e-024
Identities = 118/138 (85%)
Strand = Plus / Plus
Query: 146 aggaaatccctggttctcctgaagaacggcaagtcctcctacgctccgttgctgcccctc 205
||||| || ||||| ||||| |||||||||||| | | |||| ||| ||||||||||
Sbjct: 15 aggaagtcgctggtgctcctcaagaacggcaagccaggcgacgcgccgctgctgcccctg 74
Query: 206 ccgaagaaggccggcaagatcctggtcgccggcagccacgccaacgacctgggcaaccag 265
|| |||||||||| |||||||||||||||||| ||||||||| || ||||||| |||||
Sbjct: 75 cccaagaaggccgccaagatcctggtcgccgggagccacgccgacaacctgggttaccag 134
Query: 266 tgcggggggtggacgatc 283
||||| ||||||||||||
Sbjct: 135 tgcggcgggtggacgatc 152
Score = 60.0 bits (30), Expect = 2e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 464 ggcgacaacctgaacctgacgatcccggcgcccgggccgagc 505
||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 336 ggcgacagcctgaacctgacgatcccggaccccgggccgagc 377
>gb|CN127419.1|CN127419 RHOH1_22_H08.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_22_H08_A002 5', mRNA sequence
Length = 820
Score = 107 bits (54), Expect = 1e-021
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 186 acgctccgttgctgcccctcccgaagaaggccggcaagatcctggtcgccggcagccacg 245
|||| ||| |||||||||| || |||||||||| |||||||||||||||||| |||||||
Sbjct: 452 acgcgccgctgctgcccctgcccaagaaggccgccaagatcctggtcgccgggagccacg 511
Query: 246 ccaacgacctgggcaaccagtgcggggggtggacgatc 283
|| || ||||||| |||||||||| ||||||||||||
Sbjct: 512 ccgacaacctgggttaccagtgcggcgggtggacgatc 549
Score = 60.0 bits (30), Expect = 2e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 464 ggcgacaacctgaacctgacgatcccggcgcccgggccgagc 505
||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 733 ggcgacagcctgaacctgacgatcccggaccccgggccgagc 774
>gb|CN136159.1|CN136159 OX1_41_D06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_41_D06_A002 3', mRNA sequence
Length = 823
Score = 107 bits (54), Expect = 1e-021
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 186 acgctccgttgctgcccctcccgaagaaggccggcaagatcctggtcgccggcagccacg 245
|||| ||| |||||||||| || |||||||||| |||||||||||||||||| |||||||
Sbjct: 19 acgcgccgctgctgcccctgcccaagaaggccgccaagatcctggtcgccgggagccacg 78
Query: 246 ccaacgacctgggcaaccagtgcggggggtggacgatc 283
|| || ||||||| |||||||||| ||||||||||||
Sbjct: 79 ccgacaacctgggttaccagtgcggcgggtggacgatc 116
Score = 60.0 bits (30), Expect = 2e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 464 ggcgacaacctgaacctgacgatcccggcgcccgggccgagc 505
||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 300 ggcgacagcctgaacctgacgatcccggaccccgggccgagc 341
>gb|CW414214.1|CW414214 fsbb001f113l24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f113l24, DNA
sequence
Length = 332
Score = 105 bits (53), Expect = 4e-021
Identities = 186/229 (81%), Gaps = 1/229 (0%)
Strand = Plus / Plus
Query: 5 atgagcagaatcgacgacgccgtctacaggatccttcgtgtcaagttcaccatgggcctg 64
|||||||| |||||||||||||| ||||| || || |||||||||||||||||||||
Sbjct: 104 atgagcaggatcgacgacgccgtgacgaggattctgcgcgtcaagttcaccatgggcctg 163
Query: 65 ttcgagaacccttaccccgactctagcctcgccggcgagctcgggaagcaagaacaccgg 124
||||||||||| || ||| |||||||||||| | |||| |||||||| || ||| ||
Sbjct: 164 ttcgagaaccccatgccggaccctagcctcgccgaccagctggggaagcaggagcacagg 223
Query: 125 gaactggcgcgcgaagccgtcaggaaatccctggttctcctgaagaacggcaagtcctcc 184
|| |||||||| || || | | ||| || ||||| ||||| |||||||||||| | |
Sbjct: 224 gacctggcgcgggaggcggggatgaagtcgctggtgctcctcaagaacggcaagccaggc 283
Query: 185 tacgctccgttgctgcccct-cccgaagaaggccggcaagatcctggtc 232
|||| ||| |||||||||| || ||||||| || |||||||||||||
Sbjct: 284 gacgcgccgctgctgcccctggcccaagaagggcgccaagatcctggtc 332
>gb|CF072762.1|CF072762 FE1_25_E08.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_25_E08_A002 5', mRNA sequence
Length = 586
Score = 105 bits (53), Expect = 4e-021
Identities = 98/112 (87%), Gaps = 2/112 (1%)
Strand = Plus / Minus
Query: 468 acaacctgaacctgacgatcccggcgcccgggccgagcgtnanccagtcggtgtgcggan 527
|||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| |
Sbjct: 586 acaacctgaacctgacgatcccggcgccggggccgagcgtgatccagtcggtgtgc-aag 528
Query: 528 ncg-ccaagtgcgttgtggtcctcatctccggcaggcngctggtggtggagc 578
|| |||||||||| ||||| ||||||| ||| |||| |||||||||||||
Sbjct: 527 gcgaccaagtgcgtggtggtgctcatcttcgggaggcccctggtggtggagc 476
>gb|BF705455.1|BF705455 RHIZ2_4_B08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 496
Score = 103 bits (52), Expect = 2e-020
Identities = 91/103 (88%), Gaps = 2/103 (1%)
Strand = Plus / Plus
Query: 477 acctgacgatcccggcgcccgggccgagcgtnanccagtcggtgtgcgganncg-ccaag 535
||||||||||||||||||||||||||||||| | ||||||||||||| | || |||||
Sbjct: 1 acctgacgatcccggcgcccgggccgagcgtgatccagtcggtgtgc-aaggcgaccaag 59
Query: 536 tgcgttgtggtcctcatctccggcaggcngctggtggtggagc 578
||||| ||||| ||||||||||| |||| |||||||||||||
Sbjct: 60 tgcgtggtggtgctcatctccgggaggcccctggtggtggagc 102
>gb|BE365282.1|BE365282 PI1_26_C04.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 432
Score = 101 bits (51), Expect = 7e-020
Identities = 171/211 (81%)
Strand = Plus / Plus
Query: 5 atgagcagaatcgacgacgccgtctacaggatccttcgtgtcaagttcaccatgggcctg 64
|||||||| |||||||||||||| ||||| || || |||||||||||||||||||||
Sbjct: 222 atgagcaggatcgacgacgccgtgacgaggattctgcgcgtcaagttcaccatgggcctg 281
Query: 65 ttcgagaacccttaccccgactctagcctcgccggcgagctcgggaagcaagaacaccgg 124
||||||||||| || ||| |||||||||||| | |||| |||||||| || ||| ||
Sbjct: 282 ttcgagaaccccatgccggaccctagcctcgccgaccagctggggaagcaggagcacagg 341
Query: 125 gaactggcgcgcgaagccgtcaggaaatccctggttctcctgaagaacggcaagtcctcc 184
|| |||||||| || || || ||||| || | || ||||| |||||||||||| | |
Sbjct: 342 gacctggcgcgggaggcggtaaggaagtcgcatgtgctcctcaagaacggcaagccaggc 401
Query: 185 tacgctccgttgctgcccctcccgaagaagg 215
|||| ||| |||||||||| || |||||||
Sbjct: 402 gacgcgccgctgctgcccctgcccaagaagg 432
>gb|CD211296.1|CD211296 HS1_59_A04.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_59_A04_A012 3', mRNA sequence
Length = 562
Score = 99.6 bits (50), Expect = 3e-019
Identities = 89/101 (88%), Gaps = 2/101 (1%)
Strand = Plus / Plus
Query: 479 ctgacgatcccggcgcccgggccgagcgtnanccagtcggtgtgcgganncg-ccaagtg 537
||||||||||||||||||||||||||||| | ||||||||||||| | || |||||||
Sbjct: 1 ctgacgatcccggcgcccgggccgagcgtgatccagtcggtgtgc-aaggcgaccaagtg 59
Query: 538 cgttgtggtcctcatctccggcaggcngctggtggtggagc 578
||| ||||| ||||||||||| |||| |||||||||||||
Sbjct: 60 cgtggtggtgctcatctccgggaggcccctggtggtggagc 100
>gb|CD230640.1|CD230640 SS1_47_C05.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_47_C05_A012 3', mRNA sequence
Length = 564
Score = 99.6 bits (50), Expect = 3e-019
Identities = 89/101 (88%), Gaps = 2/101 (1%)
Strand = Plus / Plus
Query: 479 ctgacgatcccggcgcccgggccgagcgtnanccagtcggtgtgcgganncg-ccaagtg 537
||||||||||||||||||||||||||||| | ||||||||||||| | || |||||||
Sbjct: 1 ctgacgatcccggcgcccgggccgagcgtgatccagtcggtgtgc-aaggcgaccaagtg 59
Query: 538 cgttgtggtcctcatctccggcaggcngctggtggtggagc 578
||| ||||| ||||||||||| |||| |||||||||||||
Sbjct: 60 cgtggtggtgctcatctccgggaggcccctggtggtggagc 100
>gb|BG050436.1|BG050436 FM1_69_B07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 499
Score = 97.6 bits (49), Expect = 1e-018
Identities = 91/104 (87%), Gaps = 2/104 (1%)
Strand = Plus / Plus
Query: 476 aacctgacgatcccggcgcccgggccgagcgtnanccagtcggtgtgcgganncg-ccaa 534
||||||||||||||||||||||| |||||||| | ||||||||||||| | || ||||
Sbjct: 1 aacctgacgatcccggcgcccggcccgagcgtgatccagtcggtgtgc-aaggcgaccaa 59
Query: 535 gtgcgttgtggtcctcatctccggcaggcngctggtggtggagc 578
|||||| ||||| ||||||||||| |||| |||||||||||||
Sbjct: 60 gtgcgtggtggtgctcatctccgggaggcccctggtggtggagc 103
>gb|CW066394.1|CW066394 104_313_10523660_115_30149 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523660, DNA
sequence
Length = 441
Score = 95.6 bits (48), Expect = 4e-018
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 415 cgactacgcgatcgtggtggtcggggagccgccatacgcggagacgttcggcgacaacct 474
||||||||| |||| || ||||| ||||| || ||||| ||||||||||||||||||||
Sbjct: 349 cgactacgccgtcgtcgtcgtcggcgagcctccctacgccgagacgttcggcgacaacct 290
Query: 475 gaacctgacgatcccggcgcccgggccg 502
||||||||| ||||| ||||||||||||
Sbjct: 289 gaacctgaccatccctgcgcccgggccg 262
Score = 48.1 bits (24), Expect = 0.001
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 532 caagtgcgttgtggtcctcatctccggcaggcngctggtggtggagc 578
||||||||| || || ||| |||||||| ||| ||||||||||||||
Sbjct: 232 caagtgcgtcgtcgtgctcgtctccggccggccgctggtggtggagc 186
>gb|BF481458.1|BF481458 FM1_19_D09.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 511
Score = 95.6 bits (48), Expect = 4e-018
Identities = 87/99 (87%), Gaps = 2/99 (2%)
Strand = Plus / Plus
Query: 481 gacgatcccggcgcccgggccgagcgtnanccagtcggtgtgcgganncg-ccaagtgcg 539
||||||||||||||||||||||||||| | ||||||||||||| | || |||||||||
Sbjct: 1 gacgatcccggcgcccgggccgagcgtgatccagtcggtgtgc-aaggcgaccaagtgcg 59
Query: 540 ttgtggtcctcatctccggcaggcngctggtggtggagc 578
| ||||| ||||||||||| |||| |||||||||||||
Sbjct: 60 tggtggtgctcatctccgggaggcccctggtggtggagc 98
>gb|CW127764.1|CW127764 104_509_11113620_116_34747_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11113620, DNA
sequence
Length = 514
Score = 93.7 bits (47), Expect = 2e-017
Identities = 110/131 (83%)
Strand = Plus / Minus
Query: 5 atgagcagaatcgacgacgccgtctacaggatccttcgtgtcaagttcaccatgggcctg 64
|||||||| |||||||||||||| ||||| || || |||||||||||||||||||||
Sbjct: 145 atgagcaggatcgacgacgccgtgacgaggattctgcgcgtcaagttcaccatgggcctg 86
Query: 65 ttcgagaacccttaccccgactctagcctcgccggcgagctcgggaagcaagaacaccgg 124
||||||||||| || ||| |||||||||||| | |||| |||||||| || ||| ||
Sbjct: 85 ttcgagaaccccatgccggaccctagcctcgccgaccagctggggaagcaggagcacagg 26
Query: 125 gaactggcgcg 135
|| ||||||||
Sbjct: 25 gacctggcgcg 15
>gb|CD204059.1|CD204059 HS1_3_H07.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone
HS1_3_H07_A012 5', mRNA sequence
Length = 624
Score = 93.7 bits (47), Expect = 2e-017
Identities = 110/131 (83%)
Strand = Plus / Plus
Query: 5 atgagcagaatcgacgacgccgtctacaggatccttcgtgtcaagttcaccatgggcctg 64
|||||||| |||||||||||||| ||||| || || |||||||||||||||||||||
Sbjct: 480 atgagcaggatcgacgacgccgtgacgaggattctgcgcgtcaagttcaccatgggcctg 539
Query: 65 ttcgagaacccttaccccgactctagcctcgccggcgagctcgggaagcaagaacaccgg 124
||||||||||| || ||| |||||||||||| | |||| |||||||| || ||| ||
Sbjct: 540 ttcgagaaccccatgccggaccctagcctcgccgaccagctggggaagcaggagcacagg 599
Query: 125 gaactggcgcg 135
|| ||||||||
Sbjct: 600 gacctggcgcg 610
>gb|CN135804.1|CN135804 OX1_39_C01.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_39_C01_A002 3', mRNA sequence
Length = 790
Score = 93.7 bits (47), Expect = 2e-017
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 209 aagaaggccggcaagatcctggtcgccggcagccacgccaacgacctgggcaaccagtgc 268
|||||||||| |||||||||||||||||| ||||||||| || ||||||| ||||||||
Sbjct: 9 aagaaggccgccaagatcctggtcgccgggagccacgccgacaacctgggttaccagtgc 68
Query: 269 ggggggtggacgatc 283
|| ||||||||||||
Sbjct: 69 ggcgggtggacgatc 83
Score = 60.0 bits (30), Expect = 2e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 464 ggcgacaacctgaacctgacgatcccggcgcccgggccgagc 505
||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 267 ggcgacagcctgaacctgacgatcccggaccccgggccgagc 308
>gb|CN149685.1|CN149685 WOUND1_64_F12.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_64_F12_A002 3', mRNA sequence
Length = 788
Score = 93.7 bits (47), Expect = 2e-017
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 209 aagaaggccggcaagatcctggtcgccggcagccacgccaacgacctgggcaaccagtgc 268
|||||||||| |||||||||||||||||| ||||||||| || ||||||| ||||||||
Sbjct: 6 aagaaggccgccaagatcctggtcgccgggagccacgccgacaacctgggttaccagtgc 65
Query: 269 ggggggtggacgatc 283
|| ||||||||||||
Sbjct: 66 ggcgggtggacgatc 80
Score = 60.0 bits (30), Expect = 2e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 464 ggcgacaacctgaacctgacgatcccggcgcccgggccgagc 505
||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 264 ggcgacagcctgaacctgacgatcccggaccccgggccgagc 305
>gb|BG103085.1|BG103085 RHIZ2_18_A02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 456
Score = 87.7 bits (44), Expect = 1e-015
Identities = 83/95 (87%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 485 atcccggcgcccgggccgagcgtnanccagtcggtgtgcgganncg-ccaagtgcgttgt 543
||||||||||||||||||||||| | ||||||||||||| | || |||||||||| ||
Sbjct: 1 atcccggcgcccgggccgagcgtgatccagtcggtgtgc-aaggcgaccaagtgcgtggt 59
Query: 544 ggtcctcatctccggcaggcngctggtggtggagc 578
||| ||||||||||| |||| |||||||||||||
Sbjct: 60 ggtgctcatctccgggaggcccctggtggtggagc 94
>gb|CD233790.1|CD233790 SS1_4_A02.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_4_A02_A012 3', mRNA sequence
Length = 547
Score = 87.7 bits (44), Expect = 1e-015
Identities = 83/95 (87%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 485 atcccggcgcccgggccgagcgtnanccagtcggtgtgcgganncg-ccaagtgcgttgt 543
||||||||||||||||||||||| | ||||||||||||| | || |||||||||| ||
Sbjct: 1 atcccggcgcccgggccgagcgtgatccagtcggtgtgc-aaggcgaccaagtgcgtggt 59
Query: 544 ggtcctcatctccggcaggcngctggtggtggagc 578
||| ||||||||||| |||| |||||||||||||
Sbjct: 60 ggtgctcatctccgggaggcccctggtggtggagc 94
>gb|CW179961.1|CW179961 104_594_11160385_148_36634_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11160385, DNA
sequence
Length = 658
Score = 85.7 bits (43), Expect = 4e-015
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 221 aagatcctggtcgccggcagccacgccaacgacctgggcaaccagtgcggggggtggacg 280
|||||||| |||||||||||||||||| |||||||||||| ||||||||| || |||||
Sbjct: 239 aagatcctcgtcgccggcagccacgcccacgacctgggcagccagtgcggcggctggacc 298
Query: 281 atcacgtggca 291
|||| ||||||
Sbjct: 299 atcaagtggca 309
Score = 60.0 bits (30), Expect = 2e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 18 acgacgccgtctacaggatccttcgtgtcaagttcaccatgggcctgttcgagaaccc 75
||||||||||| | ||||||| || |||||||||||||||||||| |||||| ||||
Sbjct: 33 acgacgccgtcagccggatcctccgggtcaagttcaccatgggcctcttcgaggaccc 90
>gb|CW371581.1|CW371581 fsbb001f047b17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f047b17, DNA
sequence
Length = 669
Score = 85.7 bits (43), Expect = 4e-015
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 221 aagatcctggtcgccggcagccacgccaacgacctgggcaaccagtgcggggggtggacg 280
|||||||| |||||||||||||||||| |||||||||||| ||||||||| || |||||
Sbjct: 416 aagatcctcgtcgccggcagccacgcccacgacctgggcagccagtgcggcggctggacc 475
Query: 281 atcacgtggca 291
|||| ||||||
Sbjct: 476 atcaagtggca 486
Score = 60.0 bits (30), Expect = 2e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 18 acgacgccgtctacaggatccttcgtgtcaagttcaccatgggcctgttcgagaaccc 75
||||||||||| | ||||||| || |||||||||||||||||||| |||||| ||||
Sbjct: 210 acgacgccgtcagccggatcctccgggtcaagttcaccatgggcctcttcgaggaccc 267
>gb|CW393711.1|CW393711 fsbb001f080o11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f080o11, DNA
sequence
Length = 508
Score = 85.7 bits (43), Expect = 4e-015
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 221 aagatcctggtcgccggcagccacgccaacgacctgggcaaccagtgcggggggtggacg 280
|||||||| |||||||||||||||||| |||||||||||| ||||||||| || |||||
Sbjct: 300 aagatcctcgtcgccggcagccacgcccacgacctgggcagccagtgcggcggctggacc 359
Query: 281 atcacgtggca 291
|||| ||||||
Sbjct: 360 atcaagtggca 370
Score = 60.0 bits (30), Expect = 2e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 18 acgacgccgtctacaggatccttcgtgtcaagttcaccatgggcctgttcgagaaccc 75
||||||||||| | ||||||| || |||||||||||||||||||| |||||| ||||
Sbjct: 94 acgacgccgtcagccggatcctccgggtcaagttcaccatgggcctcttcgaggaccc 151
>gb|CW454568.1|CW454568 fsbb001f199b07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f199b07, DNA
sequence
Length = 398
Score = 85.7 bits (43), Expect = 4e-015
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 221 aagatcctggtcgccggcagccacgccaacgacctgggcaaccagtgcggggggtggacg 280
|||||||| |||||||||||||||||| |||||||||||| ||||||||| || |||||
Sbjct: 31 aagatcctcgtcgccggcagccacgcccacgacctgggcagccagtgcggcggctggacc 90
Query: 281 atcacgtggca 291
|||| ||||||
Sbjct: 91 atcaagtggca 101
>gb|CF483805.1|CF483805 POL1_24_G05.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_24_G05_A002 5', mRNA sequence
Length = 595
Score = 85.7 bits (43), Expect = 4e-015
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 221 aagatcctggtcgccggcagccacgccaacgacctgggcaaccagtgcggggggtggacg 280
|||||||| |||||||||||||||||| |||||||||||| ||||||||| || |||||
Sbjct: 420 aagatcctcgtcgccggcagccacgcccacgacctgggcagccagtgcggcggctggacc 479
Query: 281 atcacgtggca 291
|||| ||||||
Sbjct: 480 atcaagtggca 490
Score = 60.0 bits (30), Expect = 2e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 18 acgacgccgtctacaggatccttcgtgtcaagttcaccatgggcctgttcgagaaccc 75
||||||||||| | ||||||| || |||||||||||||||||||| |||||| ||||
Sbjct: 214 acgacgccgtcagccggatcctccgggtcaagttcaccatgggcctcttcgaggaccc 271
>gb|CX610694.1|CX610694 ANR1_20_F08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_20_F08_A002 3', mRNA sequence
Length = 677
Score = 85.7 bits (43), Expect = 4e-015
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 440 gagccgccatacgcggagacgttcggcgacaacctgaacctgacgatcccggcgcccggg 499
||||| || ||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 5 gagcctccctacgccgagacgttcggcgacaacctgaacctgaccatccctgcgcccggg 64
Query: 500 ccg 502
|||
Sbjct: 65 ccg 67
Score = 48.1 bits (24), Expect = 0.001
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 532 caagtgcgttgtggtcctcatctccggcaggcngctggtggtggagc 578
||||||||| || || ||| |||||||| ||| ||||||||||||||
Sbjct: 97 caagtgcgtcgtcgtgctcgtctccggccggccgctggtggtggagc 143
>gb|CW302461.1|CW302461 104_786_11464731_116_35664_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11464731, DNA
sequence
Length = 509
Score = 81.8 bits (41), Expect = 6e-014
Identities = 132/164 (80%)
Strand = Plus / Minus
Query: 415 cgactacgcgatcgtggtggtcggggagccgccatacgcggagacgttcggcgacaacct 474
|||||| || ||||| || ||||| ||||| || ||||| ||||| ||||||||||||
Sbjct: 262 cgactatgccatcgtcgtcgtcggcgagcctccctacgccgagacacacggcgacaacct 203
Query: 475 gaacctgacgatcccggcgcccgggccgagcgtnanccagtcggtgtgcgganncgccaa 534
||||||||| ||||| |||||||||||| ||| | || | |||||||| | ||
Sbjct: 202 gaacctgaccatccctgcgcccgggccggacgtcatccggaacgtgtgcggcagcatcag 143
Query: 535 gtgcgttgtggtcctcatctccggcaggcngctggtggtggagc 578
|||||| ||||| ||| |||||||| ||| ||||||||||||||
Sbjct: 142 gtgcgtcgtggtgctcgtctccggccggccgctggtggtggagc 99
Score = 69.9 bits (35), Expect = 2e-010
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 225 tcctggtcgccggcagccacgccaacgacctgggcaaccagtgcggggggtggacgatca 284
||||||||||||||||||||| | ||||||| |||| ||||||||| || ||||| ||||
Sbjct: 464 tcctggtcgccggcagccacggcgacgacctcggcagccagtgcggcggctggaccatca 405
Query: 285 cgtggca 291
| |||||
Sbjct: 404 cctggca 398
>gb|AW680635.1|AW680635 WS1_6_F02.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 537
Score = 77.8 bits (39), Expect = 1e-012
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 5 atgagcagaatcgacgacgccgtctacaggatccttcgtgtcaagttcaccatgggcctg 64
|||||||| |||||||||||||| ||||| || || |||||||||||||||||||||
Sbjct: 466 atgagcaggatcgacgacgccgtgacgaggattctgcgcgtcaagttcaccatgggcctg 525
Query: 65 ttcgagaaccc 75
|||||||||||
Sbjct: 526 ttcgagaaccc 536
>gb|CD206549.1|CD206549 HS1_23_G12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_23_G12_A012 5', mRNA sequence
Length = 663
Score = 71.9 bits (36), Expect = 6e-011
Identities = 99/120 (82%)
Strand = Plus / Plus
Query: 59 ggcctgttcgagaacccttaccccgactctagcctcgccggcgagctcgggaagcaagaa 118
||||||||||||||||| || ||| |||||||||||| | |||| |||||||| ||
Sbjct: 512 ggcctgttcgagaaccccatgccggaccctagcctcgccgaccagctggggaagcaggag 571
Query: 119 caccgggaactggcgcgcgaagccgtcaggaaatccctggttctcctgaagaacggcaag 178
||| |||| |||||||| || || || ||||| || ||||| ||||| ||||||||||||
Sbjct: 572 cacagggacctggcgcgggaggcggtgaggaagtcgctggtgctcctcaagaacggcaag 631
>gb|CD235366.1|CD235366 SS1_29_B08.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_29_B08_A012 3', mRNA sequence
Length = 532
Score = 71.9 bits (36), Expect = 6e-011
Identities = 112/139 (80%)
Strand = Plus / Plus
Query: 440 gagccgccatacgcggagacgttcggcgacaacctgaacctgacgatcccggcgcccggg 499
||||| || ||||| |||||| | |||||||||||||||||||| ||||| |||||||||
Sbjct: 5 gagcccccctacgccgagacgctgggcgacaacctgaacctgaccatccctgcgcccggg 64
Query: 500 ccgagcgtnanccagtcggtgtgcgganncgccaagtgcgttgtggtcctcatctccggc 559
||| ||| | || | |||||||| | || |||||| ||||| ||| |||||||
Sbjct: 65 ccggacgtcatccggaacgtgtgcggcagcatcaggtgcgtcgtggtgctcgtctccggg 124
Query: 560 aggcngctggtggtggagc 578
||| ||||||||||||||
Sbjct: 125 cggccgctggtggtggagc 143
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 150,492
Number of Sequences: 832831
Number of extensions: 150492
Number of successful extensions: 42377
Number of sequences better than 0.5: 141
Number of HSP's better than 0.5 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42145
Number of HSP's gapped (non-prelim): 200
length of query: 578
length of database: 491,359,669
effective HSP length: 19
effective length of query: 559
effective length of database: 475,535,880
effective search space: 265824556920
effective search space used: 265824556920
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)