BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750951.2.1
(1014 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW233898.1|CW233898 104_687_11213690_148_37383_009 Sorgh... 412 e-113
gb|BH245471.1|BH245471 pSB0703 S. bicolor BTx623 PstI-diges... 363 2e-098
gb|CW164218.1|CW164218 104_572_11151871_116_36465_030 Sorgh... 351 8e-095
gb|BM324257.1|BM324257 PIC1_26_B11.b1_A002 Pathogen-infecte... 337 1e-090
gb|CW234175.1|CW234175 104_687_11213841_148_37382_035 Sorgh... 317 1e-084
gb|CG993095.1|CG993095 pSB0703 Sorghum propinquum RFLP prob... 315 4e-084
gb|AY503575.1| Sorghum bicolor clone 0703-BTx3197 RFLP prob... 307 1e-081
gb|AY503576.1| Sorghum bicolor clone 0703-RTx430 RFLP probe... 307 1e-081
gb|AY503578.1| Sorghum bicolor clone 0703-152702 RFLP probe... 307 1e-081
gb|AY503579.1| Sorghum bicolor clone 0703-195684 RFLP probe... 307 1e-081
gb|AY503580.1| Sorghum arundinaceum clone 0703-225905 RFLP ... 307 1e-081
gb|AY503581.1| Sorghum bicolor clone 0703-22913 RFLP probe ... 307 1e-081
gb|AY503582.1| Sorghum bicolor clone 0703-246712 RFLP probe... 307 1e-081
gb|AY503584.1| Sorghum bicolor clone 0703-267380 RFLP probe... 307 1e-081
gb|AY503585.1| Sorghum bicolor clone 0703-50875 RFLP probe ... 307 1e-081
gb|AY503586.1| Sorghum bicolor clone 0703-51030 RFLP probe ... 307 1e-081
gb|AY503587.1| Sorghum bicolor clone 0703-514605 RFLP probe... 307 1e-081
gb|AY503588.1| Sorghum bicolor clone 0703-56003 RFLP probe ... 307 1e-081
gb|AY503589.1| Sorghum bicolor clone 0703-56174 RFLP probe ... 307 1e-081
gb|AY503590.1| Sorghum bicolor clone 0703-77034 RFLP probe ... 307 1e-081
gb|AY503591.1| Sorghum bicolor clone 0703-82459 RFLP probe ... 307 1e-081
gb|AY503592.1| Sorghum bicolor clone 0703-92381 RFLP probe ... 307 1e-081
gb|AY503593.1| Sorghum arundinaceum clone 0703-LWA4 RFLP pr... 307 1e-081
gb|AY503594.1| Sorghum arundinaceum clone 0703-LWA8 RFLP pr... 307 1e-081
gb|AY503595.1| Sorghum bicolor clone 0703-RTx406 RFLP probe... 307 1e-081
gb|AY503596.1| Sorghum bicolor clone 0703-SC0033 RFLP probe... 307 1e-081
gb|AY503597.1| Sorghum bicolor clone 0703-SC0155 RFLP probe... 307 1e-081
gb|AY503599.1| Sorghum bicolor clone 0703-SC0599 RFLP probe... 307 1e-081
gb|AY503600.1| Sorghum bicolor clone 0703-SC0706 RFLP probe... 307 1e-081
gb|AY503577.1| Sorghum bicolor clone 0703-102069 RFLP probe... 299 3e-079
gb|AY503583.1| Sorghum bicolor clone 0703-257595 RFLP probe... 299 3e-079
gb|AY503598.1| Sorghum bicolor clone 0703-SC0326 RFLP probe... 299 3e-079
gb|BI075804.1|BI075804 IP1_21_D08.b1_A002 Immature pannicle... 285 4e-075
gb|CW039330.1|CW039330 104_272_10505437_115_30390 Sorghum m... 272 6e-071
gb|BG240375.1|BG240375 OV1_29_C04.b1_A002 Ovary 1 (OV1) Sor... 214 1e-053
gb|CW188764.1|CW188764 104_608_11173219_116_36729_068 Sorgh... 210 2e-052
gb|CW053211.1|CW053211 104_293_10515837_114_30184 Sorghum m... 190 2e-046
gb|CW053338.1|CW053338 104_293_10515908_114_30185 Sorghum m... 190 2e-046
gb|CW233897.1|CW233897 104_687_11213690_116_37384_009 Sorgh... 178 7e-043
gb|CW164219.1|CW164219 104_572_11151871_148_36466_030 Sorgh... 167 3e-039
gb|CD225784.1|CD225784 CCC1_41_E11.g1_A007 Callus culture/c... 157 2e-036
gb|BI074661.1|BI074661 IP1_14_E12.b1_A002 Immature pannicle... 149 6e-034
gb|BG050964.1|BG050964 FM1_54_E04.b1_A003 Floral-Induced Me... 133 3e-029
gb|CD431058.1|CD431058 ETH1_6_B01.g1_A002 Ethylene-treated ... 98 2e-018
gb|CW188765.1|CW188765 104_608_11173219_148_36730_068 Sorgh... 80 5e-013
gb|CW279445.1|CW279445 104_754_11407082_116_35436_011 Sorgh... 80 5e-013
gb|BF587276.1|BF587276 FM1_34_D09.b1_A003 Floral-Induced Me... 66 7e-009
gb|CW279446.1|CW279446 104_754_11407082_148_35440_011 Sorgh... 60 4e-007
gb|CW287025.1|CW287025 104_765_11411200_148_35526_064 Sorgh... 60 4e-007
gb|CD234312.1|CD234312 SS1_26_D01.g1_A012 Salt-stressed see... 60 4e-007
gb|CW499621.1|CW499621 fsbb001f294h23f0 Sorghum methylation... 50 4e-004
gb|AW747016.1|AW747016 WS1_65_F02.b1_A002 Water-stressed 1 ... 42 0.099
gb|AW923974.1|AW923974 WS1_31_A04.b1_A002 Water-stressed 1 ... 42 0.099
gb|CD208331.1|CD208331 HS1_37_D10.b1_A012 Heat-shocked seed... 42 0.099
gb|CF072483.1|CF072483 FE1_3_B03.b1_A002 Iron-deficient see... 42 0.099
gb|CF431285.1|CF431285 NIT1_5_H09.b1_A002 Nitrogen-deficien... 42 0.099
gb|CN151576.1|CN151576 WOUND1_76_G03.b1_A002 Wounded leaves... 42 0.099
gb|CW285387.1|CW285387 104_762_11410305_148_35499_037 Sorgh... 40 0.39
gb|CD205293.1|CD205293 HS1_13_C01.b1_A012 Heat-shocked seed... 40 0.39
>gb|CW233898.1|CW233898 104_687_11213690_148_37383_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213690, DNA
sequence
Length = 721
Score = 412 bits (208), Expect = e-113
Identities = 330/370 (89%), Gaps = 3/370 (0%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 196 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 255
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| ||||||| |||||||||||| ||||||
Sbjct: 256 cagacatgccaaactccggcatcctgctgacacctgctgaggccatcagcctcttctcgt 315
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 316 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 375
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 376 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 435
Query: 345 ggaagacgtacgcagaagcacggccgaggatcaagggacgcttcgcgaaaagatcgtctg 404
||||||| || ||||||||| |||||||||||||||| |||||||| || ||||| ||||
Sbjct: 436 ggaagacatatgcagaagcaaggccgaggatcaagggccgcttcgccaagagatcttctg 495
Query: 405 atatggatgtcgaagtggatcagatgttctcagctgcggctctgtcgtctgatggtagct 464
||||||| |||||||||| |||||||||||| |||| ||||||||||||||||||||||
Sbjct: 496 atatggaaatcgaagtggaccagatgttctcatctgcagctctgtcgtctgatggtagct 555
Query: 465 atggtacggt 474
| ||||||||
Sbjct: 556 acggtacggt 565
>gb|BH245471.1|BH245471 pSB0703 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB0703 similar to
CONSTANS-like protein 1; controls flowering time
(AAC99309), DNA sequence
Length = 931
Score = 363 bits (183), Expect = 2e-098
Identities = 299/337 (88%), Gaps = 3/337 (0%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacga--- 164
|||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 593 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 652
Query: 165 cagacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
|||||||||||| |||||||||||||||||| ||||||| |||||||||||| ||||||
Sbjct: 653 cagacatgccaaactccggcatcctgctgacacctgctgaggccatcagcctcttctcgt 712
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 713 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 772
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 773 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 832
Query: 345 ggaagacgtacgcagaagcacggccgaggatcaagggacgcttcgcgaaaagatcgtctg 404
||||||| || ||||||||| |||||||||||||||| |||||||| || ||||| ||||
Sbjct: 833 ggaagacatatgcagaagcaaggccgaggatcaagggccgcttcgccaagagatcttctg 892
Query: 405 atatggatgtcgaagtggatcagatgttctcagctgc 441
||||||| |||||||||| |||||||||||| ||||
Sbjct: 893 atatggaaatcgaagtggaccagatgttctcatctgc 929
>gb|CW164218.1|CW164218 104_572_11151871_116_36465_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151871, DNA
sequence
Length = 758
Score = 351 bits (177), Expect = 8e-095
Identities = 219/234 (93%)
Strand = Plus / Plus
Query: 468 gtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaa 527
|||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||
Sbjct: 120 gtacggtatcttgcaactgcagcagcatgtgccaagagaaaattatgagcaacaatataa 179
Query: 528 ggttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgac 587
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 180 ggttcggttgctgaattcccaccagcagcacatttggtgcacctttgaggaggatttgat 239
Query: 588 cctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgcttt 647
|| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 240 cccacgtcatagccaagtagcgctgctatccttggctcattgaatgtaaaccagtgcttt 299
Query: 648 acgcgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtcc 701
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 300 acgcgatcaccgtaggtcttaaaacagaagtcagcatagtctgtaaacaggtcc 353
Score = 167 bits (84), Expect = 3e-039
Identities = 89/91 (97%)
Strand = Plus / Plus
Query: 701 cgccatcttcgcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcata 760
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cgccatcttagcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcata 627
Query: 761 gtggtaaaggttgatgtaaggagtnatgcct 791
|||||||||||||||||||||||| ||||||
Sbjct: 628 gtggtaaaggttgatgtaaggagtcatgcct 658
>gb|BM324257.1|BM324257 PIC1_26_B11.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 487
Score = 337 bits (170), Expect = 1e-090
Identities = 325/379 (85%)
Strand = Plus / Minus
Query: 469 tacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaag 528
||||||||||||| || |||| |||||||| ||||||||||||||||||||| || ||||
Sbjct: 397 tacggtatcttgccaccgcagcagcatgtgacaagagaaaattatgagcaacgatataag 338
Query: 529 gttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgacc 588
|||| ||||||||||||||||||||||| ||| |||| ||||||||||||||| | ||||
Sbjct: 337 gttccgttgctgaattcccaccagcagcacatttggtacacctttgaggaggaatcgacc 278
Query: 589 ctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgcttta 648
| ||||| |||||||| |||||||||||||||||||||||| ||||| |||||||
Sbjct: 277 caccatcataaccaagtagtgctactatccttggctcattgaatgtaaaccaatgcttta 218
Query: 649 cgcgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatct 708
| |||| || | | ||||||||||||||||||||||||||| |||| | ||||||||
Sbjct: 217 catgatctccaaaagacttaaaacagaagtcagcatagtctgtgaacagtttcgccatct 158
Query: 709 tcgcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaa 768
| | | ||||||| ||||||||||| |||| |||||||||||||||||| |||||||||
Sbjct: 157 tggggtttaaccatcctccatatttgttctgaagcgcaagaggaagatcggagtggtaaa 98
Query: 769 ggttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnatacg 828
| ||| ||| ||||| ||||||| ||||||||| ||| ||||||||| |||| ||| |
Sbjct: 97 gattggcgtatggagtaatgcctttctgaagcaggtagcttatcaaatttttgtaataag 38
Query: 829 ctacaccttctggattgac 847
| |||||||||||||||||
Sbjct: 37 caacaccttctggattgac 19
>gb|CW234175.1|CW234175 104_687_11213841_148_37382_035 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213841, DNA
sequence
Length = 689
Score = 317 bits (160), Expect = 1e-084
Identities = 255/286 (89%), Gaps = 3/286 (1%)
Strand = Plus / Minus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 287 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 228
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| ||||||| |||||||||||| ||||||
Sbjct: 227 cagacatgccaaactccggcatcctgctgacacctgctgaggccatcagcctcttctcgt 168
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 167 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 108
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 107 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 48
Query: 345 ggaagacgtacgcagaagcacggccgaggatcaagggacgcttcgc 390
||||||| || ||||||||| |||||||||||||||| ||||||||
Sbjct: 47 ggaagacatatgcagaagcaaggccgaggatcaagggccgcttcgc 2
>gb|CG993095.1|CG993095 pSB0703 Sorghum propinquum RFLP probe Sorghum propinquum genomic,
DNA sequence
Length = 349
Score = 315 bits (159), Expect = 4e-084
Identities = 245/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacga--- 164
|||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 77 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 136
Query: 165 cagacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
|||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 137 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 196
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 197 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 256
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| |||||||||||||| ||||| ||||
Sbjct: 257 tcaggtacaaggagaagaagaagagcagaaagttcgagaagaccatacgatatgcgacga 316
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 317 ggaagacatatgcagaagcaaggccgaggatca 349
>gb|AY503575.1| Sorghum bicolor clone 0703-BTx3197 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503576.1| Sorghum bicolor clone 0703-RTx430 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503578.1| Sorghum bicolor clone 0703-152702 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503579.1| Sorghum bicolor clone 0703-195684 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503580.1| Sorghum arundinaceum clone 0703-225905 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503581.1| Sorghum bicolor clone 0703-22913 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503582.1| Sorghum bicolor clone 0703-246712 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503584.1| Sorghum bicolor clone 0703-267380 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503585.1| Sorghum bicolor clone 0703-50875 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503586.1| Sorghum bicolor clone 0703-51030 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503587.1| Sorghum bicolor clone 0703-514605 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503588.1| Sorghum bicolor clone 0703-56003 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503589.1| Sorghum bicolor clone 0703-56174 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503590.1| Sorghum bicolor clone 0703-77034 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503591.1| Sorghum bicolor clone 0703-82459 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503592.1| Sorghum bicolor clone 0703-92381 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503593.1| Sorghum arundinaceum clone 0703-LWA4 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503594.1| Sorghum arundinaceum clone 0703-LWA8 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503595.1| Sorghum bicolor clone 0703-RTx406 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503596.1| Sorghum bicolor clone 0703-SC0033 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503597.1| Sorghum bicolor clone 0703-SC0155 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503599.1| Sorghum bicolor clone 0703-SC0599 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503600.1| Sorghum bicolor clone 0703-SC0706 RFLP probe pSB0703
Length = 347
Score = 307 bits (155), Expect = 1e-081
Identities = 244/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctggggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503577.1| Sorghum bicolor clone 0703-102069 RFLP probe pSB0703
Length = 347
Score = 299 bits (151), Expect = 3e-079
Identities = 243/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| ||||||| |||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctgaggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503583.1| Sorghum bicolor clone 0703-257595 RFLP probe pSB0703
Length = 347
Score = 299 bits (151), Expect = 3e-079
Identities = 243/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| ||||||| |||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctgaggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|AY503598.1| Sorghum bicolor clone 0703-SC0326 RFLP probe pSB0703
Length = 347
Score = 299 bits (151), Expect = 3e-079
Identities = 243/273 (89%), Gaps = 3/273 (1%)
Strand = Plus / Plus
Query: 108 agatctctttctcatcgtcaatggaggtgggtatagtaccagacaacatggcaacgac-- 165
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 75 agatatctttctcatcatcaatggaggtgggtatagtcccagacaacatggcaacgacga 134
Query: 166 -agacatgccaagctccggcatcctgctgacgcctgctggggccatcagcctggtctcgt 224
||||||||||| |||||||||||||||||| ||||||| |||||||||||| ||||||
Sbjct: 135 cagacatgccaaactccggcatcctgctgacacctgctgaggccatcagcctcttctcgt 194
Query: 225 cgggtcctccgctccagatgccgcttcacttggcctccatggacagggaggccagggtgc 284
| ||| || |||| |||||||| || |||||| ||||||||||||| ||||||||||| |
Sbjct: 195 caggttcttcgcttcagatgccactccacttgacctccatggacagagaggccagggtcc 254
Query: 285 tgaggtacagggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacga 344
| ||||||| |||||||||||||||||| ||||| | |||||||||||| ||||| ||||
Sbjct: 255 tcaggtacaaggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacga 314
Query: 345 ggaagacgtacgcagaagcacggccgaggatca 377
||||||| || ||||||||| ||||||||||||
Sbjct: 315 ggaagacatatgcagaagcaaggccgaggatca 347
>gb|BI075804.1|BI075804 IP1_21_D08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 473
Score = 285 bits (144), Expect = 4e-075
Identities = 167/176 (94%)
Strand = Plus / Minus
Query: 672 cagaagtcagcatagtctgtaaacaagtccgccatcttcgcgcttaaccaccctccatat 731
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 473 cagaagtcagcatagtctgtaaacaggtccgccatcttagcgcttaaccaccctccatat 414
Query: 732 ttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatgtaaggagtnatgcct 791
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 413 ttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatgtaaggagtcatgcct 354
Query: 792 tgctgaagcagatagnntatcaaattattgtnatacgctacaccttctggattgac 847
| ||||||||||||| ||||| |||||||| ||| ||||||||||||||||||||
Sbjct: 353 ttctgaagcagatagtttatcagattattgtaatatgctacaccttctggattgac 298
>gb|CW039330.1|CW039330 104_272_10505437_115_30390 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505437, DNA
sequence
Length = 686
Score = 272 bits (137), Expect = 6e-071
Identities = 215/241 (89%)
Strand = Plus / Minus
Query: 234 cgctccagatgccgcttcacttggcctccatggacagggaggccagggtgctgaggtaca 293
|||| |||||||| || |||||| ||||||||||||| ||||||||||| || |||||||
Sbjct: 676 cgcttcagatgccactccacttgacctccatggacagagaggccagggtcctcaggtaca 617
Query: 294 gggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacgaggaagacgt 353
|||||||||||||||||| ||||| | |||||||||||| ||||| ||||||||||| |
Sbjct: 616 aggagaagaagaagagcagaaagttcgcgaagaccatacgatatgcgacgaggaagacat 557
Query: 354 acgcagaagcacggccgaggatcaagggacgcttcgcgaaaagatcgtctgatatggatg 413
| ||||||||| |||||||||||||||| |||||||| || ||||| |||||||||||
Sbjct: 556 atgcagaagcaaggccgaggatcaagggccgcttcgccaagagatcttctgatatggaaa 497
Query: 414 tcgaagtggatcagatgttctcagctgcggctctgtcgtctgatggtagctatggtacgg 473
|||||||||| |||||||||||| |||| ||||||||||||||||||||||| |||||||
Sbjct: 496 tcgaagtggaccagatgttctcatctgcagctctgtcgtctgatggtagctacggtacgg 437
Query: 474 t 474
|
Sbjct: 436 t 436
>gb|BG240375.1|BG240375 OV1_29_C04.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 418
Score = 214 bits (108), Expect = 1e-053
Identities = 125/132 (94%)
Strand = Plus / Minus
Query: 716 taaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaaggttgat 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 taaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaaggttgat 359
Query: 776 gtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnatacgctacacc 835
||||||||| ||||||| ||||||||||||| ||||| |||||||| ||| ||||||||
Sbjct: 358 gtaaggagtcatgcctttctgaagcagatagtttatcagattattgtaatatgctacacc 299
Query: 836 ttctggattgac 847
||||||||||||
Sbjct: 298 ttctggattgac 287
>gb|CW188764.1|CW188764 104_608_11173219_116_36729_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173219, DNA
sequence
Length = 632
Score = 210 bits (106), Expect = 2e-052
Identities = 193/223 (86%)
Strand = Plus / Plus
Query: 469 tacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaag 528
||||||||||||| || |||| |||||||| ||||||||||||||||||||| || ||||
Sbjct: 410 tacggtatcttgccaccgcagcagcatgtgacaagagaaaattatgagcaacgatataag 469
Query: 529 gttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgacc 588
|||| ||||||||||||||||||||||| ||| |||| ||||||||||||||| | ||||
Sbjct: 470 gttccgttgctgaattcccaccagcagcacatttggtacacctttgaggaggaatcgacc 529
Query: 589 ctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgcttta 648
| ||||| |||||||| |||||||||||||||||||||||| ||||| |||||||
Sbjct: 530 caccatcataaccaagtagtgctactatccttggctcattgaatgtaaaccaatgcttta 589
Query: 649 cgcgatcgccgtaggtcttaaaacagaagtcagcatagtctgt 691
| |||| || | |||||||||||||||||||||||||||
Sbjct: 590 catgatctccaagagacttaaaacagaagtcagcatagtctgt 632
>gb|CW053211.1|CW053211 104_293_10515837_114_30184 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515837, DNA
sequence
Length = 664
Score = 190 bits (96), Expect = 2e-046
Identities = 159/181 (87%)
Strand = Plus / Minus
Query: 469 tacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaag 528
||||||||||||| || |||| |||||||| ||||||||||||||||||||| || ||||
Sbjct: 198 tacggtatcttgccaccgcagcagcatgtgacaagagaaaattatgagcaacgatataag 139
Query: 529 gttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgacc 588
|||| ||||||||||||||||||||||| ||| |||| ||||||||||||||| | ||||
Sbjct: 138 gttccgttgctgaattcccaccagcagcacatttggtacacctttgaggaggaatcgacc 79
Query: 589 ctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgcttta 648
| ||||| |||||||| |||||||||||||||||||||||| ||||| |||||||
Sbjct: 78 caccatcataaccaagtagtgctactatccttggctcattgaatgtaaaccaatgcttta 19
Query: 649 c 649
|
Sbjct: 18 c 18
>gb|CW053338.1|CW053338 104_293_10515908_114_30185 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515908, DNA
sequence
Length = 660
Score = 190 bits (96), Expect = 2e-046
Identities = 159/181 (87%)
Strand = Plus / Minus
Query: 469 tacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaag 528
||||||||||||| || |||| |||||||| ||||||||||||||||||||| || ||||
Sbjct: 198 tacggtatcttgccaccgcagcagcatgtgacaagagaaaattatgagcaacgatataag 139
Query: 529 gttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgacc 588
|||| ||||||||||||||||||||||| ||| |||| ||||||||||||||| | ||||
Sbjct: 138 gttccgttgctgaattcccaccagcagcacatttggtacacctttgaggaggaatcgacc 79
Query: 589 ctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgcttta 648
| ||||| |||||||| |||||||||||||||||||||||| ||||| |||||||
Sbjct: 78 caccatcataaccaagtagtgctactatccttggctcattgaatgtaaaccaatgcttta 19
Query: 649 c 649
|
Sbjct: 18 c 18
>gb|CW233897.1|CW233897 104_687_11213690_116_37384_009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11213690, DNA
sequence
Length = 698
Score = 178 bits (90), Expect = 7e-043
Identities = 135/150 (90%)
Strand = Plus / Minus
Query: 325 gaccatacggtatgcaacgaggaagacgtacgcagaagcacggccgaggatcaagggacg 384
||||||||| ||||| ||||||||||| || ||||||||| |||||||||||||||| ||
Sbjct: 698 gaccatacgatatgcgacgaggaagacatatgcagaagcaaggccgaggatcaagggccg 639
Query: 385 cttcgcgaaaagatcgtctgatatggatgtcgaagtggatcagatgttctcagctgcggc 444
|||||| || ||||| ||||||||||| |||||||||| |||||||||||| |||| ||
Sbjct: 638 cttcgccaagagatcttctgatatggaaatcgaagtggaccagatgttctcatctgcagc 579
Query: 445 tctgtcgtctgatggtagctatggtacggt 474
||||||||||||||||||||| ||||||||
Sbjct: 578 tctgtcgtctgatggtagctacggtacggt 549
>gb|CW164219.1|CW164219 104_572_11151871_148_36466_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151871, DNA
sequence
Length = 737
Score = 167 bits (84), Expect = 3e-039
Identities = 89/91 (97%)
Strand = Plus / Minus
Query: 701 cgccatcttcgcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcata 760
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cgccatcttagcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcata 631
Query: 761 gtggtaaaggttgatgtaaggagtnatgcct 791
|||||||||||||||||||||||| ||||||
Sbjct: 630 gtggtaaaggttgatgtaaggagtcatgcct 600
Score = 75.8 bits (38), Expect = 7e-012
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 789 ccttgctgaagcagatagnntatcaaattattgtnatacgctacaccttctggattgac 847
|||| ||||||||||||| ||||| |||||||| ||| ||||||||||||||||||||
Sbjct: 499 cctttctgaagcagatagtttatcagattattgtaatatgctacaccttctggattgac 441
>gb|CD225784.1|CD225784 CCC1_41_E11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_41_E11_A007 5', mRNA sequence
Length = 643
Score = 157 bits (79), Expect = 2e-036
Identities = 96/103 (93%)
Strand = Plus / Minus
Query: 745 caagaggaagatcatagtggtaaaggttgatgtaaggagtnatgccttgctgaagcagat 804
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 643 caagaggaagatcatagtggtaaaggttgatgtaaggagtcatgcctttctgaagcagat 584
Query: 805 agnntatcaaattattgtnatacgctacaccttctggattgac 847
|| ||||| |||||||| ||| ||||||||||||||||||||
Sbjct: 583 agtttatcagattattgtaatatgctacaccttctggattgac 541
>gb|BI074661.1|BI074661 IP1_14_E12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 642
Score = 149 bits (75), Expect = 6e-034
Identities = 98/107 (91%)
Strand = Plus / Minus
Query: 741 agcgcaagaggaagatcatagtggtaaaggttgatgtaaggagtnatgccttgctgaagc 800
||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||
Sbjct: 642 agcgcaagaggaagatcatagtggtaaaggtcgatgtaaggagtcatgcctctctgaagc 583
Query: 801 agatagnntatcaaattattgtnatacgctacaccttctggattgac 847
|||||| ||||| |||||||| ||| ||||||||||||||||||||
Sbjct: 582 agatagtttatcagattattgtaatatgctacaccttctggattgac 536
>gb|BG050964.1|BG050964 FM1_54_E04.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 447
Score = 133 bits (67), Expect = 3e-029
Identities = 76/79 (96%)
Strand = Plus / Minus
Query: 468 gtacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaa 527
|||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||
Sbjct: 79 gtacggtatcttgcaactgcagcagcatgtgccaagagaaaattatgagcaacaatataa 20
Query: 528 ggttcggttgctgaattcc 546
|||||||||||||||||||
Sbjct: 19 ggttcggttgctgaattcc 1
>gb|CD431058.1|CD431058 ETH1_6_B01.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_B01_A002 5', mRNA sequence
Length = 617
Score = 97.6 bits (49), Expect = 2e-018
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 743 cgcaagaggaagatcatagtggtaaaggttgatgtaaggagtnatgccttgctgaagcag 802
||||||||||||||| |||||||||| ||| ||| ||||| ||||||| |||||||||
Sbjct: 617 cgcaagaggaagatcggagtggtaaagattggcgtatggagtaatgcctttctgaagcag 558
Query: 803 atagnntatcaaattattgtnatacgctacaccttctggattgac 847
||| ||||||||| |||| ||| || |||||||||||||||||
Sbjct: 557 gtagcttatcaaatttttgtaataagcaacaccttctggattgac 513
>gb|CW188765.1|CW188765 104_608_11173219_148_36730_068 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173219, DNA
sequence
Length = 729
Score = 79.8 bits (40), Expect = 5e-013
Identities = 78/91 (85%)
Strand = Plus / Minus
Query: 701 cgccatcttcgcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcata 760
||||||||| | | ||||||| ||||||||||| |||| |||||||||||||||||| |
Sbjct: 451 cgccatcttggggtttaaccatcctccatatttgttctgaagcgcaagaggaagatcgga 392
Query: 761 gtggtaaaggttgatgtaaggagtnatgcct 791
||||||||| ||| ||| ||||| ||||||
Sbjct: 391 gtggtaaagattggcgtatggagtaatgcct 361
Score = 60.0 bits (30), Expect = 4e-007
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 789 ccttgctgaagcagatagnntatcaaattattgtnatacgctacaccttctggattgac 847
|||| ||||||||| ||| ||||||||| |||| ||| || |||||||||||||||||
Sbjct: 270 cctttctgaagcaggtagcttatcaaatttttgtaataagcaacaccttctggattgac 212
>gb|CW279445.1|CW279445 104_754_11407082_116_35436_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407082, DNA
sequence
Length = 609
Score = 79.8 bits (40), Expect = 5e-013
Identities = 78/91 (85%)
Strand = Plus / Plus
Query: 701 cgccatcttcgcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcata 760
||||||||| | | ||||||| ||||||||||| |||| |||||||||||||||||| |
Sbjct: 156 cgccatcttggggtttaaccatcctccatatttgttctgaagcgcaagaggaagatcgga 215
Query: 761 gtggtaaaggttgatgtaaggagtnatgcct 791
||||||||| ||| ||| ||||| ||||||
Sbjct: 216 gtggtaaagattggcgtatggagtaatgcct 246
Score = 60.0 bits (30), Expect = 4e-007
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 789 ccttgctgaagcagatagnntatcaaattattgtnatacgctacaccttctggattgac 847
|||| ||||||||| ||| ||||||||| |||| ||| || |||||||||||||||||
Sbjct: 337 cctttctgaagcaggtagcttatcaaatttttgtaataagcaacaccttctggattgac 395
>gb|BF587276.1|BF587276 FM1_34_D09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 503
Score = 65.9 bits (33), Expect = 7e-009
Identities = 138/174 (79%)
Strand = Plus / Minus
Query: 611 tactatccttggctcattgaatnnnaaccagtgctttacgcgatcgccgtaggtcttaaa 670
|||||||||||||||||| ||| ||||||| ||| || |||||||| | ||||| ||
Sbjct: 216 tactatccttggctcatttaatgtgaaccagttcttgactcgatcgccaaaagtcttgaa 157
Query: 671 acagaagtcagcatagtctgtaaacaagtccgccatcttcgcgcttaaccaccctccata 730
||| || || |||||||| | ||| | || | | || || | || |||||| ||| ||
Sbjct: 156 acaaaaatcggcatagtcagcaaatatgttcacaatttttgggcctaaccagccttggta 97
Query: 731 tttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatgtaaggagt 784
|| |||| ||||||||| |||||||||||||||| ||||||| |||||||||
Sbjct: 96 ctttttctgaagcgcaagtggaagatcatagtggttaaggttggcgtaaggagt 43
Score = 60.0 bits (30), Expect = 4e-007
Identities = 75/90 (83%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| ||||||||||| | ||||| | |||||| |||| |||||||||
Sbjct: 356 cggtatcttgcaacagcagtagcatgagataagaggatgttatgaacaacaatgtaaggt 297
Query: 531 tcggttgctgaattcccaccagcagcgcat 560
|| || | ||| |||||||| |||| ||||
Sbjct: 296 tctgtcgatgagttcccaccggcagtgcat 267
>gb|CW279446.1|CW279446 104_754_11407082_148_35440_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407082, DNA
sequence
Length = 640
Score = 60.0 bits (30), Expect = 4e-007
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 789 ccttgctgaagcagatagnntatcaaattattgtnatacgctacaccttctggattgac 847
|||| ||||||||| ||| ||||||||| |||| ||| || |||||||||||||||||
Sbjct: 590 cctttctgaagcaggtagcttatcaaatttttgtaataagcaacaccttctggattgac 532
>gb|CW287025.1|CW287025 104_765_11411200_148_35526_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411200, DNA
sequence
Length = 672
Score = 60.0 bits (30), Expect = 4e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 735 ttctcaagcgcaagaggaagatcatagtggtaaaggttgatgtaaggagt 784
|||| ||||||||| |||||||||||||||| ||||||| |||||||||
Sbjct: 137 ttctgaagcgcaagtggaagatcatagtggttaaggttggcgtaaggagt 186
>gb|CD234312.1|CD234312 SS1_26_D01.g1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_26_D01_A012 5', mRNA sequence
Length = 637
Score = 60.0 bits (30), Expect = 4e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 735 ttctcaagcgcaagaggaagatcatagtggtaaaggttgatgtaaggagt 784
|||| ||||||||| |||||||||||||||| ||||||| |||||||||
Sbjct: 632 ttctgaagcgcaagtggaagatcatagtggttaaggttggcgtaaggagt 583
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 219,784
Number of Sequences: 832831
Number of extensions: 219784
Number of successful extensions: 68062
Number of sequences better than 0.5: 59
Number of HSP's better than 0.5 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67948
Number of HSP's gapped (non-prelim): 79
length of query: 1014
length of database: 491,359,669
effective HSP length: 20
effective length of query: 994
effective length of database: 474,703,049
effective search space: 471854830706
effective search space used: 471854830706
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)