BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750912.2.1
(1095 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CD223413.1|CD223413 CCC1_27_B07.g1_A007 Callus culture/c... 890 0.0
gb|BM326395.1|BM326395 PIC1_56_E07.b1_A002 Pathogen-infecte... 835 0.0
gb|BF585996.1|BF585996 FM1_33_B09.b1_A003 Floral-Induced Me... 809 0.0
gb|BF587183.1|BF587183 FM1_33_B09.b2_A003 Floral-Induced Me... 781 0.0
gb|BM323957.1|BM323957 PIC1_29_F08.b1_A002 Pathogen-infecte... 662 0.0
gb|BG462783.1|BG462783 EM1_45_E05.b1_A002 Embryo 1 (EM1) So... 301 7e-080
gb|BG462790.1|BG462790 EM1_45_E12.b1_A002 Embryo 1 (EM1) So... 285 4e-075
gb|CW129606.1|CW129606 104_511_11114656_116_34765_052 Sorgh... 272 6e-071
gb|BG557916.1|BG557916 EM1_39_B09.g1_A002 Embryo 1 (EM1) So... 254 1e-065
gb|BE594978.1|BE594978 PI1_48_C05.g1_A002 Pathogen induced ... 250 2e-064
gb|CL170980.1|CL170980 104_372_10889083_148_31778_139 Sorgh... 240 2e-061
gb|BM324562.1|BM324562 PIC1_32_G08.b1_A002 Pathogen-infecte... 222 5e-056
gb|BM325769.1|BM325769 PIC1_52_E07.b1_A002 Pathogen-infecte... 222 5e-056
gb|BG411597.1|BG411597 EM1_58_F09.b1_A002 Embryo 1 (EM1) So... 218 8e-055
gb|BG817517.1|BG817517 EM1_76_H12.b1_A002 Embryo 1 (EM1) So... 218 8e-055
gb|BF422304.1|BF422304 FM1_13_H02.b1_A003 Floral-Induced Me... 200 2e-049
gb|BF704751.1|BF704751 FM1_51_A12.b1_A003 Floral-Induced Me... 200 2e-049
gb|CW447952.1|CW447952 fsbb001f181f02k0 Sorghum methylation... 196 3e-048
gb|BZ350303.1|BZ350303 hr53e07.g1 WGS-SbicolorF (JM107 adap... 178 7e-043
gb|CW221255.1|CW221255 104_656_11197801_116_37452_011 Sorgh... 174 1e-041
gb|CW320967.1|CW320967 104_814_11475293_116_35934_029 Sorgh... 174 1e-041
gb|CW327863.1|CW327863 104_823_11478984_148_35977_084 Sorgh... 161 2e-037
gb|CF433816.1|CF433816 NIT1_30_E02.g1_A002 Nitrogen-deficie... 143 4e-032
gb|BG560027.1|BG560027 RHIZ2_68_E09.b1_A003 Rhizome2 (RHIZ2... 133 4e-029
gb|BI141013.1|BI141013 IP1_42_A10.b1_A002 Immature pannicle... 123 4e-026
gb|BZ345587.1|BZ345587 hr53e07.b1 WGS-SbicolorF (JM107 adap... 119 6e-025
gb|BG558795.1|BG558795 RHIZ2_56_F08.b1_A003 Rhizome2 (RHIZ2... 117 2e-024
gb|BF176910.1|BF176910 EM1_4_C02.b1_A002 Embryo 1 (EM1) Sor... 115 9e-024
gb|BF481720.1|BF481720 FM1_21_E10.b1_A003 Floral-Induced Me... 109 5e-022
gb|BM322337.1|BM322337 PIC1_3_D06.b1_A002 Pathogen-infected... 101 1e-019
gb|BI098203.1|BI098203 IP1_29_D05.b1_A002 Immature pannicle... 90 5e-016
gb|BM322327.1|BM322327 PIC1_3_B06.b1_A002 Pathogen-infected... 88 2e-015
gb|BG158321.1|BG158321 EM1_12_E06.b1_A002 Embryo 1 (EM1) So... 84 3e-014
gb|BI643705.1|BI643705 IP1_56_A06.b1_A002 Immature pannicle... 84 3e-014
gb|BM324748.1|BM324748 PIC1_35_B08.b1_A002 Pathogen-infecte... 84 3e-014
gb|BE600084.1|BE600084 PI1_79_B07.b1_A002 Pathogen induced ... 74 3e-011
gb|BM323872.1|BM323872 PIC1_28_F07.b1_A002 Pathogen-infecte... 74 3e-011
gb|CW163532.1|CW163532 104_571_11151512_148_36455_028 Sorgh... 72 1e-010
gb|CW320968.1|CW320968 104_814_11475293_148_35938_029 Sorgh... 72 1e-010
gb|CW447951.1|CW447951 fsbb001f181f02f0 Sorghum methylation... 72 1e-010
gb|BG464175.1|BG464175 EM1_70_E09.b1_A002 Embryo 1 (EM1) So... 64 3e-008
gb|CW113777.1|CW113777 104_488_11105634_148_34562_075 Sorgh... 60 5e-007
gb|BE600981.1|BE600981 PI1_95_E03.b1_A002 Pathogen induced ... 58 2e-006
gb|BI076072.1|BI076072 IP1_25_C11.b1_A002 Immature pannicle... 58 2e-006
gb|BM325683.1|BM325683 PIC1_47_E07.b1_A002 Pathogen-infecte... 56 7e-006
gb|BM325852.1|BM325852 PIC1_53_F03.b1_A002 Pathogen-infecte... 56 7e-006
gb|AW287591.2|AW287591 LG1_244_A08.b1_A002 Light Grown 1 (L... 54 3e-005
gb|BG947248.1|BG947248 IP1_3_C08.b1_A002 Immature pannicle ... 54 3e-005
gb|BE365314.1|BE365314 PI1_26_G10.b1_A002 Pathogen induced ... 50 4e-004
gb|BG357738.1|BG357738 OV2_29_G02.b1_A002 Ovary 2 (OV2) Sor... 50 4e-004
gb|BG412918.1|BG412918 OV2_36_E05.b1_A002 Ovary 2 (OV2) Sor... 50 4e-004
gb|CD228392.1|CD228392 CCC1_7_C10.g1_A007 Callus culture/ce... 48 0.002
gb|CW113776.1|CW113776 104_488_11105634_116_34558_075 Sorgh... 46 0.007
gb|BZ626162.1|BZ626162 ih44a02.b1 WGS-SbicolorF (DH5a methy... 42 0.11
gb|CL190675.1|CL190675 104_409_10906243_114_32488_080 Sorgh... 42 0.11
gb|CW023671.1|CW023671 104_163_10432579_1_30001 Sorghum met... 42 0.11
gb|CW064113.1|CW064113 104_310_10522384_115_30146 Sorghum m... 42 0.11
>gb|CD223413.1|CD223413 CCC1_27_B07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_27_B07_A007 5', mRNA sequence
Length = 658
Score = 890 bits (449), Expect = 0.0
Identities = 602/651 (92%), Gaps = 4/651 (0%)
Strand = Plus / Plus
Query: 209 tatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcgattaacacaa 268
||||||||||| ||||||| ||||| || |||||||||||||||||||| || ||||| |
Sbjct: 4 tatctagccaa-gcatgcacctcggagtccttgcgactgcatggcacgccatcaacacca 62
Query: 269 agtccatgttcactgtctactacaagcctaggacgagcccttcagagtttatcattccat 328
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 63 aatccatgttcactgtctactacaagcctaggacgagcccttcagagttcatcataccat 122
Query: 329 atgatcaatatatggagtcagtaaaaaacaattattctattgggatgagattcaggatga 388
|||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| ||||
Sbjct: 123 atgatcaatatatggagtcagtgaaaaataactattcaattgggatgagattcagaatga 182
Query: 389 ggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagttggctgtgaaa 448
||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct: 183 ggtttgaaggggaagaggcaccagagcagaggtttactggtacaatcgttggctgtgaaa 242
Query: 449 atcttgacccactatggcctgattccagttggagatacttgaaggtgcgctgggatgagc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 atcttgacccactatggcctgattccagttggagatacttgaaggtgcgctgggatgagc 302
Query: 509 cttctactatcccgcggccagataaggtctctccctggaagatagagcctgcttcatcac 568
||||||||||||| || ||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 303 cttctactatcccacgaccagatagggtctctccttggaagatagagcctgcttcatcac 362
Query: 569 ctcctgttaatcctctccctct---ttctagaggaaaaagacctagacaaaatgcgcctc 625
|||| |||||||| ||||| || |||||||| ||||||||||||||||||||| ||||
Sbjct: 363 ctccagttaatccactcccgctttcttctagagtaaaaagacctagacaaaatgctcctc 422
Query: 626 caccttcccctgaatcatctgttctcacaaaagaaggtgcaaccaagattgatactgatt 685
||||||| |||||| |||||||||||||||||||| ||||| ||||||| |||| ||| |
Sbjct: 423 caccttcacctgaagcatctgttctcacaaaagaaagtgcagccaagatcgatattgact 482
Query: 686 ctgctcaaacaccacatcaaaattcggtcttgcaaagtcaagagcagatgagctttagga 745
|||||||||||| |||||||||||||||||||||| |||||||||| |||| ||| ||||
Sbjct: 483 ctgctcaaacacaacatcaaaattcggtcttgcaaggtcaagagcaaatgaccttgagga 542
Query: 746 acaacctgactgaaagcaccgactctgattccactgttcagaagcagatgatgtggtccc 805
|||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 543 acaacctgactgaaagcaacgactctgattccactgttcaaaagccgatgatgtggtccc 602
Query: 806 catcacccaatgggaaagttcacactaattttcagccgagacctgctatgg 856
|||||||||||||||||| |||||||| ||||||| ||||||||||||||
Sbjct: 603 catcacccaatgggaaagcccacactaactttcagcagagacctgctatgg 653
>gb|BM326395.1|BM326395 PIC1_56_E07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 541
Score = 835 bits (421), Expect = 0.0
Identities = 505/533 (94%)
Strand = Plus / Plus
Query: 33 catcttccgcgggcaacccaggaggcatctccttcagagtggttggagtgtttttgtcag 92
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 9 catctttcgcgggcaacccaggaggcatctccttcagagtggttggagtgtttttgttag 68
Query: 93 ttccaaaaggcttgttgctggagacgccttcattttcctcagaggagaaaacggtgaact 152
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 69 ttccaaaaggcttgttgctggagacgccttcattttcctcagaggagaaaatggtgaact 128
Query: 153 tcgagttggtgttaggcgcgctatgaggcagttgtctaatgtaccttcttcggttatatc 212
||| |||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct: 129 tcgggttggtgttaggcgggctatgaggcagttgtctaatgtaccttcttcagtcatatc 188
Query: 213 tagccaaagcatgcatctcggggttcttgcgactgcatggcacgcgattaacacaaagtc 272
||||||||||||||| ||||| || |||||||||||||||||||| || ||||| || ||
Sbjct: 189 tagccaaagcatgcacctcggagtccttgcgactgcatggcacgccatcaacaccaaatc 248
Query: 273 catgttcactgtctactacaagcctaggacgagcccttcagagtttatcattccatatga 332
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 249 catgttcactgtctactacaagcctaggacgagcccttcagagttcatcataccatatga 308
Query: 333 tcaatatatggagtcagtaaaaaacaattattctattgggatgagattcaggatgaggtt 392
|||||||||||||||||| ||||| || ||||| ||||||||||||||||| ||||||||
Sbjct: 309 tcaatatatggagtcagtgaaaaataactattcaattgggatgagattcagaatgaggtt 368
Query: 393 tgaaggggaagaggcccccgagcagaggtttactggtacaatagttggctgtgaaaatct 452
||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 369 tgaaggggaagaggcaccagagcagaggtttactggtacaatcgttggctgtgaaaatct 428
Query: 453 tgacccactatggcctgattccagttggagatacttgaaggtgcgctgggatgagccttc 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgacccactatggcctgattccagttggagatacttgaaggtgcgctgggatgagccttc 488
Query: 513 tactatcccgcggccagataaggtctctccctggaagatagagcctgcttcat 565
||||||||| || ||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 489 tactatcccacgaccagatagggtctctccttggaagatagagcctgcttcat 541
>gb|BF585996.1|BF585996 FM1_33_B09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 583
Score = 809 bits (408), Expect = 0.0
Identities = 532/573 (92%), Gaps = 3/573 (0%)
Strand = Plus / Plus
Query: 167 ggcgcgctatgaggcagttgtctaatgtaccttcttcggttatatctagccaaagcatgc 226
|||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 8 ggcgggctatgaggcagttgtctaatgtaccttcttcagtcatatctagccaaagcatgc 67
Query: 227 atctcggggttcttgcgactgcatggcacgcgattaacacaaagtccatgttcactgtct 286
| ||||| || |||||||||||||||||||| || ||||| || ||||||||||||||||
Sbjct: 68 acctcggagtccttgcgactgcatggcacgccatcaacaccaaatccatgttcactgtct 127
Query: 287 actacaagcctaggacgagcccttcagagtttatcattccatatgatcaatatatggagt 346
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 128 actacaagcctaggacgagcccttcagagttcatcataccatatgatcaatatatggagt 187
Query: 347 cagtaaaaaacaattattctattgggatgagattcaggatgaggtttgaaggggaagagg 406
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cagtgaaaaataactattctattgggatgagattcaggatgaggtttgaaggggaagagg 247
Query: 407 cccccgagcagaggtttactggtacaatagttggctgtgaaaatcttgacccactatggc 466
| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 248 caccagagcagaggtttactggtacaatcgttggctgtgaaaatcttgacccactatggc 307
Query: 467 ctgattccagttggagatacttgaaggtgcgctgggatgagccttctactatcccgcggc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 308 ctgattccagttggagatacttgaaggtgcgctgggatgagccttctactatcccacgac 367
Query: 527 cagataaggtctctccctggaagatagagcctgcttcatcacctcctgttaatcctctcc 586
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 368 cagatagggtctctccttggaagatagagcctgcttcatcacctccagttaatccactcc 427
Query: 587 ctct---ttctagaggaaaaagacctagacaaaatgcgcctccaccttcccctgaatcat 643
| || |||||||| ||||||||||||||||||||| ||||||||||| |||||| |||
Sbjct: 428 cgctttcttctagagtaaaaagacctagacaaaatgctcctccaccttcacctgaagcat 487
Query: 644 ctgttctcacaaaagaaggtgcaaccaagattgatactgattctgctcaaacaccacatc 703
||||||||||||||||| ||||| ||||||| |||| ||| |||||||| |||| |||||
Sbjct: 488 ctgttctcacaaaagaaagtgcagccaagatcgatattgactctgctcanacacaacatc 547
Query: 704 aaaattcggtcttgcaaagtcaagagcagatga 736
||||||||||||||||| |||||||||| ||||
Sbjct: 548 aaaattcggtcttgcaaggtcaagagcaaatga 580
>gb|BF587183.1|BF587183 FM1_33_B09.b2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 555
Score = 781 bits (394), Expect = 0.0
Identities = 510/548 (93%), Gaps = 3/548 (0%)
Strand = Plus / Plus
Query: 167 ggcgcgctatgaggcagttgtctaatgtaccttcttcggttatatctagccaaagcatgc 226
|||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 8 ggcgggctatgaggcagttgtctaatgtaccttcttcagtcatatctagccaaagcatgc 67
Query: 227 atctcggggttcttgcgactgcatggcacgcgattaacacaaagtccatgttcactgtct 286
| ||||| || |||||||||||||||||||| || ||||| || ||||||||||||||||
Sbjct: 68 acctcggagtccttgcgactgcatggcacgccatcaacaccaaatccatgttcactgtct 127
Query: 287 actacaagcctaggacgagcccttcagagtttatcattccatatgatcaatatatggagt 346
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 128 actacaagcctaggacgagcccttcagagttcatcataccatatgatcaatatatggagt 187
Query: 347 cagtaaaaaacaattattctattgggatgagattcaggatgaggtttgaaggggaagagg 406
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cagtgaaaaataactattctattgggatgagattcaggatgaggtttgaaggggaagagg 247
Query: 407 cccccgagcagaggtttactggtacaatagttggctgtgaaaatcttgacccactatggc 466
| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 248 caccagagcagaggtttactggtacaatcgttggctgtgaaaatcttgacccactatggc 307
Query: 467 ctgattccagttggagatacttgaaggtgcgctgggatgagccttctactatcccgcggc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 308 ctgattccagttggagatacttgaaggtgcgctgggatgagccttctactatcccacgac 367
Query: 527 cagataaggtctctccctggaagatagagcctgcttcatcacctcctgttaatcctctcc 586
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 368 cagatagggtctctccttggaagatagagcctgcttcatcacctccagttaatccactcc 427
Query: 587 ctct---ttctagaggaaaaagacctagacaaaatgcgcctccaccttcccctgaatcat 643
| || |||||||| ||||||||||||||||||||| ||||||||||| |||||| |||
Sbjct: 428 cgctttcttctagagtaaaaagacctagacaaaatgctcctccaccttcacctgaagcat 487
Query: 644 ctgttctcacaaaagaaggtgcaaccaagattgatactgattctgctcaaacaccacatc 703
||||||||||||||||| ||||| ||||||| |||| ||| ||||||||||||| |||||
Sbjct: 488 ctgttctcacaaaagaaagtgcagccaagatcgatattgactctgctcaaacacaacatc 547
Query: 704 aaaattcg 711
||||||||
Sbjct: 548 aaaattcg 555
>gb|BM323957.1|BM323957 PIC1_29_F08.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 594
Score = 662 bits (334), Expect = 0.0
Identities = 447/484 (92%), Gaps = 3/484 (0%)
Strand = Plus / Plus
Query: 419 ggtttactggtacaatagttggctgtgaaaatcttgacccactatggcctgattccagtt 478
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ggtttactggtacaatcgttggctgtgaaaatcttgacccactatggcctgattccagtt 67
Query: 479 ggagatacttgaaggtgcgctgggatgagccttctactatcccgcggccagataaggtct 538
||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||
Sbjct: 68 ggagatacttgaaggtgcgctgggatgagccttctactatcccacgaccagatagggtct 127
Query: 539 ctccctggaagatagagcctgcttcatcacctcctgttaatcctctccctctt---tcta 595
|||| ||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||
Sbjct: 128 ctccttggaagatagagcctgcttcatcacctccagttaatccactcccgcttagttcta 187
Query: 596 gaggaaaaagacctagacaaaatgcgcctccaccttcccctgaatcatctgttctcacaa 655
||| ||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||
Sbjct: 188 gagtaaaaagacctagacaaaatgctcctccaccttcacctgaagcatctgttctcacaa 247
Query: 656 aagaaggtgcaaccaagattgatactgattctgctcaaacaccacatcaaaattcggtct 715
||||| ||||| ||||||| |||| ||| ||||||||||||| |||||||||||||||||
Sbjct: 248 aagaaagtgcagccaagatcgatattgactctgctcaaacacaacatcaaaattcggtct 307
Query: 716 tgcaaagtcaagagcagatgagctttaggaacaacctgactgaaagcaccgactctgatt 775
||||| |||||||||| |||| ||| |||||||||||||||||||||| |||||||||||
Sbjct: 308 tgcaaggtcaagagcaaatgaccttgaggaacaacctgactgaaagcaacgactctgatt 367
Query: 776 ccactgttcagaagcagatgatgtggtccccatcacccaatgggaaagttcacactaatt 835
|||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 368 ccactgttcaaaagccgatgatgtggtccccatcacccaatgggaaagcccacactaact 427
Query: 836 ttcagccgagacctgctatgggtaactggatgccattgggaaggcgtgaaactgacttca 895
|||||| |||||||||||||| || ||||||||| |||||||||||||||| |||||||
Sbjct: 428 ttcagcagagacctgctatggatagttggatgccaatgggaaggcgtgaaacggacttca 487
Query: 896 agga 899
||||
Sbjct: 488 agga 491
Score = 63.9 bits (32), Expect = 3e-008
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 918 ggatgcccgcaccncttctcaatcgtttggagatacacannggnnctttatgcaagctta 977
|||||||||||| | |||||||| ||| |||||||||| || ||| |||||||||||
Sbjct: 510 ggatgcccgcactgcctctcaatcatttagagatacacaggggttcttcatgcaagctta 569
Query: 978 tgatgac 984
|||||||
Sbjct: 570 tgatgac 576
>gb|BG462783.1|BG462783 EM1_45_E05.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 542
Score = 301 bits (152), Expect = 7e-080
Identities = 212/232 (91%)
Strand = Plus / Plus
Query: 668 ccaagattgatactgattctgctcaaacaccacatcaaaattcggtcttgcaaagtcaag 727
||||||| |||| ||| ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 1 ccaagatcgatattgactctgctcaaacacaacatcaaaattcggtcttgcaaggtcaag 60
Query: 728 agcagatgagctttaggaacaacctgactgaaagcaccgactctgattccactgttcaga 787
|||| |||| ||| |||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 61 agcaaatgaccttgaggaacaacctgactgaaagcaacgactctgattccactgttcaaa 120
Query: 788 agcagatgatgtggtccccatcacccaatgggaaagttcacactaattttcagccgagac 847
||| |||||||||||||||||||||||||||||||| |||||||| ||||||| |||||
Sbjct: 121 agccgatgatgtggtccccatcacccaatgggaaagcccacactaactttcagcagagac 180
Query: 848 ctgctatgggtaactggatgccattgggaaggcgtgaaactgacttcaagga 899
||||||||| || ||||||||| |||||||||||||||| |||||||||||
Sbjct: 181 ctgctatggatagttggatgccaatgggaaggcgtgaaacggacttcaagga 232
Score = 65.9 bits (33), Expect = 7e-009
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 918 ggatgcccgcaccncttctcaatcgtttggagatacacannggnnctttatgcaagctta 977
|||||||||||| | |||||||| ||| |||||||||| || ||| |||||||||||
Sbjct: 251 ggatgcccgcactgcctctcaatcatttagagatacacaggggttcttcatgcaagctta 310
Query: 978 tgatgaca 985
||||||||
Sbjct: 311 tgatgaca 318
>gb|BG462790.1|BG462790 EM1_45_E12.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 572
Score = 285 bits (144), Expect = 4e-075
Identities = 210/232 (90%)
Strand = Plus / Plus
Query: 668 ccaagattgatactgattctgctcaaacaccacatcaaaattcggtcttgcaaagtcaag 727
||||||| |||| ||| |||| ||||||| |||||||||||||||||||||| ||||||
Sbjct: 1 ccaagatcgatattgactctgagcaaacacaacatcaaaattcggtcttgcaaggtcaag 60
Query: 728 agcagatgagctttaggaacaacctgactgaaagcaccgactctgattccactgttcaga 787
|||| |||| ||| |||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 61 agcaaatgaccttgaggaacaacctgactgaaagcaacgactctgattccactgttcaaa 120
Query: 788 agcagatgatgtggtccccatcacccaatgggaaagttcacactaattttcagccgagac 847
||| |||||||||||||||||||||||||||||||| |||||||| ||||||| |||||
Sbjct: 121 agccgatgatgtggtccccatcacccaatgggaaagcccacactaactttcagcagagac 180
Query: 848 ctgctatgggtaactggatgccattgggaaggcgtgaaactgacttcaagga 899
||||||||| || ||||||||| |||||||||||||||| |||||||||||
Sbjct: 181 ctgctatggatagttggatgccaatgggaaggcgtgaaacggacttcaagga 232
Score = 65.9 bits (33), Expect = 7e-009
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 918 ggatgcccgcaccncttctcaatcgtttggagatacacannggnnctttatgcaagctta 977
|||||||||||| | |||||||| ||| |||||||||| || ||| |||||||||||
Sbjct: 251 ggatgcccgcactgcctctcaatcatttagagatacacaggggttcttcatgcaagctta 310
Query: 978 tgatgaca 985
||||||||
Sbjct: 311 tgatgaca 318
>gb|CW129606.1|CW129606 104_511_11114656_116_34765_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11114656, DNA
sequence
Length = 692
Score = 272 bits (137), Expect = 6e-071
Identities = 185/201 (92%)
Strand = Plus / Plus
Query: 699 acatcaaaattcggtcttgcaaagtcaagagcagatgagctttaggaacaacctgactga 758
|||||||||||||||||||||| |||||||||| |||| ||| |||||||||||||||||
Sbjct: 1 acatcaaaattcggtcttgcaaggtcaagagcaaatgaccttgaggaacaacctgactga 60
Query: 759 aagcaccgactctgattccactgttcagaagcagatgatgtggtccccatcacccaatgg 818
||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 61 aagcaacgactctgattccactgttcaaaagccgatgatgtggtccccatcacccaatgg 120
Query: 819 gaaagttcacactaattttcagccgagacctgctatgggtaactggatgccattgggaag 878
||||| |||||||| ||||||| |||||||||||||| || ||||||||| |||||||
Sbjct: 121 gaaagcccacactaactttcagcagagacctgctatggatagttggatgccaatgggaag 180
Query: 879 gcgtgaaactgacttcaagga 899
||||||||| |||||||||||
Sbjct: 181 gcgtgaaacggacttcaagga 201
Score = 65.9 bits (33), Expect = 7e-009
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 918 ggatgcccgcaccncttctcaatcgtttggagatacacannggnnctttatgcaagctta 977
|||||||||||| | |||||||| ||| |||||||||| || ||| |||||||||||
Sbjct: 220 ggatgcccgcactgcctctcaatcatttagagatacacaggggttcttcatgcaagctta 279
Query: 978 tgatgaca 985
||||||||
Sbjct: 280 tgatgaca 287
>gb|BG557916.1|BG557916 EM1_39_B09.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 442
Score = 254 bits (128), Expect = 1e-065
Identities = 185/200 (92%), Gaps = 3/200 (1%)
Strand = Plus / Plus
Query: 297 taggacgagcccttcagagtttatcattccatatgatcaatatatggagtcagtaaaa-a 355
||||| ||||||||||||||| || || |||||||||| ||| ||||||||||||||| |
Sbjct: 56 taggatgagcccttcagagttcattataccatatgatccata-atggagtcagtaaaaga 114
Query: 356 acaattattctatt-gggatgagattcaggatgaggtttgaaggggaagaggcccccgag 414
||||||||| |||| ||| |||||||||||||||||||||||||||||||||| | |||
Sbjct: 115 acaattattttatttggggtgagattcaggatgaggtttgaaggggaagaggcactagag 174
Query: 415 cagaggtttactggtacaatagttggctgtgaaaatcttgacccactatggcctgattcc 474
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 175 cggaggtttactggtacaatagttcgctgtgaaaatcttgacccactatggcctgattcc 234
Query: 475 agttggagatacttgaaggt 494
||||||||||||||||||||
Sbjct: 235 agttggagatacttgaaggt 254
>gb|BE594978.1|BE594978 PI1_48_C05.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 534
Score = 250 bits (126), Expect = 2e-064
Identities = 180/194 (92%), Gaps = 3/194 (1%)
Strand = Plus / Plus
Query: 303 gagcccttcagagtttatcattccatatgatcaatatatggagtcagtaaaa-aacaatt 361
||||||||||||||| || || |||||||||| ||| ||||||||||||||| |||||||
Sbjct: 1 gagcccttcagagttcattataccatatgatccata-atggagtcagtaaaagaacaatt 59
Query: 362 attctatt-gggatgagattcaggatgaggtttgaaggggaagaggcccccgagcagagg 420
||| |||| ||| |||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct: 60 attttatttggggtgagattcaggatgaggtttgaaggggaagaggcactagagcggagg 119
Query: 421 tttactggtacaatagttggctgtgaaaatcttgacccactatggcctgattccagttgg 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tttactggtacaatagttcgctgtgaaaatcttgacccactatggcctgattccagttgg 179
Query: 481 agatacttgaaggt 494
||||||||||||||
Sbjct: 180 agatacttgaaggt 193
>gb|CL170980.1|CL170980 104_372_10889083_148_31778_139 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889083, DNA
sequence
Length = 654
Score = 240 bits (121), Expect = 2e-061
Identities = 157/169 (92%)
Strand = Plus / Plus
Query: 132 cagaggagaaaacggtgaacttcgagttggtgttaggcgcgctatgaggcagttgtctaa 191
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 328 cagaggagaaaatggtgaacttcgggttggtgttaggcgggctatgaggcagttgtctaa 387
Query: 192 tgtaccttcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatg 251
|||||||||||| || |||||||||||||||||||| ||||| || ||||||||||||||
Sbjct: 388 tgtaccttcttcagtcatatctagccaaagcatgcacctcggagtccttgcgactgcatg 447
Query: 252 gcacgcgattaacacaaagtccatgttcactgtctactacaagcctagg 300
|||||| || ||||| || ||||||||||||||||||||||||||||||
Sbjct: 448 gcacgccatcaacaccaaatccatgttcactgtctactacaagcctagg 496
Score = 174 bits (88), Expect = 1e-041
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 43 gggcaacccaggaggcatctccttcagagtggttggagtgtttttgtcagttccaaaagg 102
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 162 gggcaacccaggaggcatctccttcagagtggttggagtgtttttgttagttccaaaagg 221
Query: 103 cttgttgctggagacgccttcattttcctcag 134
||||||||||||||||||||||||||||||||
Sbjct: 222 cttgttgctggagacgccttcattttcctcag 253
>gb|BM324562.1|BM324562 PIC1_32_G08.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 529
Score = 222 bits (112), Expect = 5e-056
Identities = 154/168 (91%)
Strand = Plus / Plus
Query: 732 gatgagctttaggaacaacctgactgaaagcaccgactctgattccactgttcagaagca 791
||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 8 gatgaccttgaggaacaacctgactgaaagcaacgactctgattccactgttcaaaagcc 67
Query: 792 gatgatgtggtccccatcacccaatgggaaagttcacactaattttcagccgagacctgc 851
|||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||
Sbjct: 68 gatgatgtggtccccatcacccaatgggaaagcccacactaactttcagcagagacctgc 127
Query: 852 tatgggtaactggatgccattgggaaggcgtgaaactgacttcaagga 899
||||| || ||||||||| |||||||||||||||| |||||||||||
Sbjct: 128 tatggatagttggatgccaatgggaaggcgtgaaacggacttcaagga 175
Score = 65.9 bits (33), Expect = 7e-009
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 918 ggatgcccgcaccncttctcaatcgtttggagatacacannggnnctttatgcaagctta 977
|||||||||||| | |||||||| ||| |||||||||| || ||| |||||||||||
Sbjct: 194 ggatgcccgcactgcctctcaatcatttagagatacacaggggttcttcatgcaagctta 253
Query: 978 tgatgaca 985
||||||||
Sbjct: 254 tgatgaca 261
>gb|BM325769.1|BM325769 PIC1_52_E07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 554
Score = 222 bits (112), Expect = 5e-056
Identities = 154/168 (91%)
Strand = Plus / Plus
Query: 732 gatgagctttaggaacaacctgactgaaagcaccgactctgattccactgttcagaagca 791
||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 8 gatgaccttgaggaacaacctgactgaaagcaacgactctgattccactgttcaaaagcc 67
Query: 792 gatgatgtggtccccatcacccaatgggaaagttcacactaattttcagccgagacctgc 851
|||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||
Sbjct: 68 gatgatgtggtccccatcacccaatgggaaagcccacactaactttcagcagagacctgc 127
Query: 852 tatgggtaactggatgccattgggaaggcgtgaaactgacttcaagga 899
||||| || ||||||||| |||||||||||||||| |||||||||||
Sbjct: 128 tatggatagttggatgccaatgggaaggcgtgaaacggacttcaagga 175
Score = 65.9 bits (33), Expect = 7e-009
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 918 ggatgcccgcaccncttctcaatcgtttggagatacacannggnnctttatgcaagctta 977
|||||||||||| | |||||||| ||| |||||||||| || ||| |||||||||||
Sbjct: 194 ggatgcccgcactgcctctcaatcatttagagatacacaggggttcttcatgcaagctta 253
Query: 978 tgatgaca 985
||||||||
Sbjct: 254 tgatgaca 261
>gb|BG411597.1|BG411597 EM1_58_F09.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 523
Score = 218 bits (110), Expect = 8e-055
Identities = 146/158 (92%)
Strand = Plus / Plus
Query: 742 aggaacaacctgactgaaagcaccgactctgattccactgttcagaagcagatgatgtgg 801
|||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||
Sbjct: 14 aggaacaacctgactgaaagcaacgactctgattccactgttcaaaagccgatgatgtgg 73
Query: 802 tccccatcacccaatgggaaagttcacactaattttcagccgagacctgctatgggtaac 861
|||||||||||||||||||||| |||||||| ||||||| |||||||||||||| ||
Sbjct: 74 tccccatcacccaatgggaaagcccacactaactttcagcagagacctgctatggatagt 133
Query: 862 tggatgccattgggaaggcgtgaaactgacttcaagga 899
||||||||| |||||||||||||||| |||||||||||
Sbjct: 134 tggatgccaatgggaaggcgtgaaacggacttcaagga 171
Score = 65.9 bits (33), Expect = 7e-009
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 918 ggatgcccgcaccncttctcaatcgtttggagatacacannggnnctttatgcaagctta 977
|||||||||||| | |||||||| ||| |||||||||| || ||| |||||||||||
Sbjct: 190 ggatgcccgcactgcctctcaatcatttagagatacacaggggttcttcatgcaagctta 249
Query: 978 tgatgaca 985
||||||||
Sbjct: 250 tgatgaca 257
>gb|BG817517.1|BG817517 EM1_76_H12.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 570
Score = 218 bits (110), Expect = 8e-055
Identities = 146/158 (92%)
Strand = Plus / Plus
Query: 742 aggaacaacctgactgaaagcaccgactctgattccactgttcagaagcagatgatgtgg 801
|||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||
Sbjct: 14 aggaacaacctgactgaaagcaacgactctgattccactgttcaaaagccgatgatgtgg 73
Query: 802 tccccatcacccaatgggaaagttcacactaattttcagccgagacctgctatgggtaac 861
|||||||||||||||||||||| |||||||| ||||||| |||||||||||||| ||
Sbjct: 74 tccccatcacccaatgggaaagcccacactaactttcagcagagacctgctatggatagt 133
Query: 862 tggatgccattgggaaggcgtgaaactgacttcaagga 899
||||||||| |||||||||||||||| |||||||||||
Sbjct: 134 tggatgccaatgggaaggcgtgaaacggacttcaagga 171
Score = 65.9 bits (33), Expect = 7e-009
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 918 ggatgcccgcaccncttctcaatcgtttggagatacacannggnnctttatgcaagctta 977
|||||||||||| | |||||||| ||| |||||||||| || ||| |||||||||||
Sbjct: 190 ggatgcccgcactgcctctcaatcatttagagatacacaggggttcttcatgcaagctta 249
Query: 978 tgatgaca 985
||||||||
Sbjct: 250 tgatgaca 257
>gb|BF422304.1|BF422304 FM1_13_H02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 443
Score = 200 bits (101), Expect = 2e-049
Identities = 140/153 (91%)
Strand = Plus / Plus
Query: 747 caacctgactgaaagcaccgactctgattccactgttcagaagcagatgatgtggtcccc 806
|||||||||||||| || ||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 9 caacctgactgaaaacaacgactctgattccactgttcaaaagccgatgatgtggtcccc 68
Query: 807 atcacccaatgggaaagttcacactaattttcagccgagacctgctatgggtaactggat 866
||||||||||||||||| |||||||| ||||||| |||||||||||||| || |||||
Sbjct: 69 atcacccaatgggaaagcccacactaactttcagcagagacctgctatggatagttggat 128
Query: 867 gccattgggaaggcgtgaaactgacttcaagga 899
|||| |||||||||||||||| |||||||||||
Sbjct: 129 gccaatgggaaggcgtgaaacagacttcaagga 161
Score = 65.9 bits (33), Expect = 7e-009
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 918 ggatgcccgcaccncttctcaatcgtttggagatacacannggnnctttatgcaagctta 977
|||||||||||| | |||||||| ||| |||||||||| || ||| |||||||||||
Sbjct: 180 ggatgcccgcactgcctctcaatcatttagagatacacaggggttcttcatgcaagctta 239
Query: 978 tgatgaca 985
||||||||
Sbjct: 240 tgatgaca 247
>gb|BF704751.1|BF704751 FM1_51_A12.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 560
Score = 200 bits (101), Expect = 2e-049
Identities = 140/153 (91%)
Strand = Plus / Plus
Query: 747 caacctgactgaaagcaccgactctgattccactgttcagaagcagatgatgtggtcccc 806
|||||||||||||| || ||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 9 caacctgactgaaaacaacgactctgattccactgttcaaaagccgatgatgtggtcccc 68
Query: 807 atcacccaatgggaaagttcacactaattttcagccgagacctgctatgggtaactggat 866
||||||||||||||||| |||||||| ||||||| |||||||||||||| || |||||
Sbjct: 69 atcacccaatgggaaagcccacactaactttcagcagagacctgctatggatagttggat 128
Query: 867 gccattgggaaggcgtgaaactgacttcaagga 899
|||| |||||||||||||||| |||||||||||
Sbjct: 129 gccaatgggaaggcgtgaaacagacttcaagga 161
Score = 65.9 bits (33), Expect = 7e-009
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 918 ggatgcccgcaccncttctcaatcgtttggagatacacannggnnctttatgcaagctta 977
|||||||||||| | |||||||| ||| |||||||||| || ||| |||||||||||
Sbjct: 180 ggatgcccgcactgcctctcaatcatttagagatacacaggggttcttcatgcaagctta 239
Query: 978 tgatgaca 985
||||||||
Sbjct: 240 tgatgaca 247
>gb|CW447952.1|CW447952 fsbb001f181f02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f181f02, DNA
sequence
Length = 655
Score = 196 bits (99), Expect = 3e-048
Identities = 156/171 (91%), Gaps = 3/171 (1%)
Strand = Plus / Minus
Query: 132 cagaggagaaaac-ggtgaacttc-gagttggtgttaggcgcgctatgaggcagttgtct 189
|||||||||||| |||||||||| | ||||| |||||||| ||||||||||||||||||
Sbjct: 635 cagaggagaaaaatggtgaacttccgggttgg-gttaggcgggctatgaggcagttgtct 577
Query: 190 aatgtaccttcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgca 249
|||||||||||||| || |||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 576 aatgtaccttcttcagtcatatctagccaaagcatgcacctcggagtccttgcgactgca 517
Query: 250 tggcacgcgattaacacaaagtccatgttcactgtctactacaagcctagg 300
|||||||| || ||||| || ||||||||||||||||||||||||||||||
Sbjct: 516 tggcacgccatcaacaccaaatccatgttcactgtctactacaagcctagg 466
Score = 176 bits (89), Expect = 3e-042
Identities = 116/125 (92%)
Strand = Plus / Minus
Query: 297 taggacgagcccttcagagtttatcattccatatgatcaatatatggagtcagtaaaaaa 356
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 321 taggacgagcccttcagagttcatcataccatatgatcaatatatggagtcagtgaaaaa 262
Query: 357 caattattctattgggatgagattcaggatgaggtttgaaggggaagaggcccccgagca 416
|| ||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct: 261 taactattcaattgggatgagattcagaatgaggtttgaaggggaagaggcaccagagca 202
Query: 417 gaggt 421
|||||
Sbjct: 201 gaggt 197
Score = 145 bits (73), Expect = 1e-032
Identities = 76/77 (98%)
Strand = Plus / Minus
Query: 418 aggtttactggtacaatagttggctgtgaaaatcttgacccactatggcctgattccagt 477
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 aggtttactggtacaatcgttggctgtgaaaatcttgacccactatggcctgattccagt 25
Query: 478 tggagatacttgaaggt 494
|||||||||||||||||
Sbjct: 24 tggagatacttgaaggt 8
>gb|BZ350303.1|BZ350303 hr53e07.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr53e07 5', DNA sequence
Length = 249
Score = 178 bits (90), Expect = 7e-043
Identities = 135/150 (90%)
Strand = Plus / Minus
Query: 750 cctgactgaaagcaccgactctgattccactgttcagaagcagatgatgtggtccccatc 809
|||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 230 cctgactgaaagcaacgactctgattccactgttcaaaagccgatgatgtggtccccatc 171
Query: 810 acccaatgggaaagttcacactaattttcagccgagacctgctatgggtaactggatgcc 869
|||||||||||||| | |||||| ||||||| ||| |||||||||| || ||||||||
Sbjct: 170 acccaatgggaaagcccccactaactttcagcagagccctgctatggatagttggatgcc 111
Query: 870 attgggaaggcgtgaaactgacttcaagga 899
| |||||||||||||| | |||||||||||
Sbjct: 110 aatgggaaggcgtgaaccggacttcaagga 81
Score = 54.0 bits (27), Expect = 3e-005
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 918 ggatgcccgcaccncttctcaatcgtttggagatacacannggnnctttatgcaagctta 977
|||||||||||| | |||||||| ||| |||||||||| || ||| |||||||||||
Sbjct: 62 ggatgcccgcactccctctcaatcatttagagatacacaggggttcttcatgcaagctta 3
Query: 978 tg 979
||
Sbjct: 2 tg 1
>gb|CW221255.1|CW221255 104_656_11197801_116_37452_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197801, DNA
sequence
Length = 690
Score = 174 bits (88), Expect = 1e-041
Identities = 91/92 (98%)
Strand = Plus / Minus
Query: 43 gggcaacccaggaggcatctccttcagagtggttggagtgtttttgtcagttccaaaagg 102
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 132 gggcaacccaggaggcatctccttcagagtggttggagtgtttttgttagttccaaaagg 73
Query: 103 cttgttgctggagacgccttcattttcctcag 134
||||||||||||||||||||||||||||||||
Sbjct: 72 cttgttgctggagacgccttcattttcctcag 41
Score = 71.9 bits (36), Expect = 1e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgg 44
||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 416 gatctgcatggcatggagtggcgcttccgccacatctttcgcgg 373
>gb|CW320967.1|CW320967 104_814_11475293_116_35934_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475293, DNA
sequence
Length = 656
Score = 174 bits (88), Expect = 1e-041
Identities = 91/92 (98%)
Strand = Plus / Minus
Query: 43 gggcaacccaggaggcatctccttcagagtggttggagtgtttttgtcagttccaaaagg 102
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 177 gggcaacccaggaggcatctccttcagagtggttggagtgtttttgttagttccaaaagg 118
Query: 103 cttgttgctggagacgccttcattttcctcag 134
||||||||||||||||||||||||||||||||
Sbjct: 117 cttgttgctggagacgccttcattttcctcag 86
Score = 71.9 bits (36), Expect = 1e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgg 44
||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 461 gatctgcatggcatggagtggcgcttccgccacatctttcgcgg 418
>gb|CW327863.1|CW327863 104_823_11478984_148_35977_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11478984, DNA
sequence
Length = 294
Score = 161 bits (81), Expect = 2e-037
Identities = 116/127 (91%), Gaps = 3/127 (2%)
Strand = Plus / Minus
Query: 537 ctctccctggaagatagagcctgcttcatcacctcctgttaatcctctccctctttct-- 594
|||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 294 ctctccttggaagatagagcctgcttcatcacctccagttaatccactcccgctttcttc 235
Query: 595 -agaggaaaaagacctagacaaaatgcgcctccaccttcccctgaatcatctgttctcac 653
|||| ||||||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct: 234 tagagtaaaaagacctagacaaaatgctcctccaccttcacctgaagcatctgttctcac 175
Query: 654 aaaagaa 660
|||||||
Sbjct: 174 aaaagaa 168
Score = 97.6 bits (49), Expect = 2e-018
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 660 aggtgcaaccaagattgatactgattctgctcaaacaccacatcaaaattcggtcttgca 719
||||||| ||||||| |||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct: 77 aggtgcagccaagatcgatattgactctgctcaaacacaacatcaaaattcggtcttgca 18
Query: 720 aagtcaagagcagatga 736
| |||||||||| ||||
Sbjct: 17 aggtcaagagcaaatga 1
>gb|CF433816.1|CF433816 NIT1_30_E02.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_30_E02_A002 5', mRNA sequence
Length = 697
Score = 143 bits (72), Expect = 4e-032
Identities = 99/108 (91%)
Strand = Plus / Plus
Query: 792 gatgatgtggtccccatcacccaatgggaaagttcacactaattttcagccgagacctgc 851
|||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||
Sbjct: 1 gatgatgtggtccccatcacccaatgggaaagcccacactaactttcagcagagacctgc 60
Query: 852 tatgggtaactggatgccattgggaaggcgtgaaactgacttcaagga 899
||||| || ||||||||| |||||||||||||||| |||||||||||
Sbjct: 61 tatggatagttggatgccaatgggaaggcgtgaaacggacttcaagga 108
Score = 56.0 bits (28), Expect = 7e-006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 934 tctcaatcgtttggagatacacannggnnctttatgcaagcttatgatgaca 985
|||||||| ||| |||||||||| || ||| |||||||||||||||||||
Sbjct: 139 tctcaatcatttagagatacacaggggttcttcatgcaagcttatgatgaca 190
>gb|BG560027.1|BG560027 RHIZ2_68_E09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 562
Score = 133 bits (67), Expect = 4e-029
Identities = 304/383 (79%)
Strand = Plus / Plus
Query: 46 caacccaggaggcatctccttcagagtggttggagtgtttttgtcagttccaaaaggctt 105
|||||| | |||||||| | |||||||| |||||||||||||| ||| |||| | |||
Sbjct: 15 caaccccgaaggcatcttttgcagagtggctggagtgtttttgttagtgccaagcgtctt 74
Query: 106 gttgctggagacgccttcattttcctcagaggagaaaacggtgaacttcgagttggtgtt 165
|||||||| || |||||||| || || ||||| || || || || || || || || ||
Sbjct: 75 gttgctggggatgccttcatctttctgagaggtgataatggggagctgcgtgtgggagtc 134
Query: 166 aggcgcgctatgaggcagttgtctaatgtaccttcttcggttatatctagccaaagcatg 225
||||| || ||||||||| | ||||| || ||||| || ||||| ||||| ||||||
Sbjct: 135 aggcgtgccatgaggcagcaagcaaatgttccgtcttcagtaatatcaagccacagcatg 194
Query: 226 catctcggggttcttgcgactgcatggcacgcgattaacacaaagtccatgttcactgtc 285
||||| || |||||||| ||||||||||| || ||||||| | ||||||||||||||
Sbjct: 195 catcttggtgttcttgctactgcatggcatgctgttaacactgggaccatgttcactgtc 254
Query: 286 tactacaagcctaggacgagcccttcagagtttatcattccatatgatcaatatatggag 345
|||||||| |||||||| || || | |||||| | | || | ||||| |||||||||
Sbjct: 255 tactacaaacctaggacaagtccagctgagtttgttgtcccctgtgatcgctatatggag 314
Query: 346 tcagtaaaaaacaattattctattgggatgagattcaggatgaggtttgaaggggaagag 405
||| | ||| ||||| |||| ||||||||||| | |||||||||||||| ||||||
Sbjct: 315 tcactgaaacgaaattaccctatagggatgagatttaaaatgaggtttgaaggtgaagag 374
Query: 406 gcccccgagcagaggtttactgg 428
|| || ||||| ||||| |||||
Sbjct: 375 gctccagagcaaaggttcactgg 397
>gb|BI141013.1|BI141013 IP1_42_A10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 475
Score = 123 bits (62), Expect = 4e-026
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 406 gatctgcatggcatggagtggcgcttccgccacatctttcgcgggcaacccaggaggcat 465
Query: 61 ctccttcaga 70
||||||||||
Sbjct: 466 ctccttcaga 475
>gb|BZ345587.1|BZ345587 hr53e07.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr53e07 5', DNA sequence
Length = 269
Score = 119 bits (60), Expect = 6e-025
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 43 gggcaacccaggaggcatctccttcagagtggttggagtgtttttgtcagttccaaaagg 102
||||||||||||||| |||||||||||||||| ||||| | ||||| ||||||||||||
Sbjct: 105 gggcaacccaggagggatctccttcagagtgggtggaggggttttggtagttccaaaagg 164
Query: 103 cttgttgctggagacgccttcattttcctcag 134
||| |||||||||||||||||||||||||||
Sbjct: 165 gttggtgctggagacgccttcattttcctcag 196
>gb|BG558795.1|BG558795 RHIZ2_56_F08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 440
Score = 117 bits (59), Expect = 2e-024
Identities = 239/299 (79%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||||||||| |||| ||||| || || ||||| ||| | || |||||| | ||||||
Sbjct: 142 gatctgcatggtgtggaatggcgctttcgtcacatattcagaggtcaaccccgaaggcat 201
Query: 61 ctccttcagagtggttggagtgtttttgtcagttccaaaaggcttgttgctggagacgcc 120
|| | |||||||| |||||||||||||| ||| |||| | ||||||||||| || |||
Sbjct: 202 cttttgcagagtggctggagtgtttttgttagtgccaagcgtcttgttgctggggatgcc 261
Query: 121 ttcattttcctcagaggagaaaacggtgaacttcgagttggtgttaggcgcgctatgagg 180
||||| || || ||||| || || || || || || || || || ||||| || ||||||
Sbjct: 262 ttcatctttctgagaggtgataatggggagctgcgtgtgggagtcaggcgtgccatgagg 321
Query: 181 cagttgtctaatgtaccttcttcggttatatctagccaaagcatgcatctcggggttctt 240
||| | ||||| || ||||| || ||||| ||||| ||||||||||| || ||||||
Sbjct: 322 cagcaagcaaatgttccgtcttcagtaatatcaagccacagcatgcatcttggtgttctt 381
Query: 241 gcgactgcatggcacgcgattaacacaaagtccatgttcactgtctactacaagcctag 299
|| ||||||||||| || ||||||| | |||||||||||||||||||||| |||||
Sbjct: 382 gctactgcatggcatgctgttaacactgggaccatgttcactgtctactacaaacctag 440
>gb|BF176910.1|BF176910 EM1_4_C02.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 469
Score = 115 bits (58), Expect = 9e-024
Identities = 286/362 (79%)
Strand = Plus / Plus
Query: 67 cagagtggttggagtgtttttgtcagttccaaaaggcttgttgctggagacgccttcatt 126
|||||||| |||||||||||||| ||| | || | ||||||||||| || ||||||||
Sbjct: 12 cagagtggctggagtgtttttgttagtgcaaagcgtcttgttgctggggatgccttcatc 71
Query: 127 ttcctcagaggagaaaacggtgaacttcgagttggtgttaggcgcgctatgaggcagttg 186
|| || ||||| || || || || || || || || || ||||| || |||||||||
Sbjct: 72 tttctgagaggtgataatggggagctgcgtgtgggagtcaggcgtgccatgaggcagcaa 131
Query: 187 tctaatgtaccttcttcggttatatctagccaaagcatgcatctcggggttcttgcgact 246
| ||||| || ||||| || ||||| ||||| ||||||||||| || |||||||| |||
Sbjct: 132 gcaaatgttccgtcttcagtaatatcaagccacagcatgcatcttggtgttcttgctact 191
Query: 247 gcatggcacgcgattaacacaaagtccatgttcactgtctactacaagcctaggacgagc 306
|||||||| || ||||||| | |||||||||||||||||||||| |||||||| ||
Sbjct: 192 gcatggcatgctgttaacactgggaccatgttcactgtctactacaaacctaggacaagt 251
Query: 307 ccttcagagtttatcattccatatgatcaatatatggagtcagtaaaaaacaattattct 366
|| | |||||| | | || | ||||| |||| ||||||| | ||| ||||| ||
Sbjct: 252 ccagctgagtttgttgtcccctgtgatcgctatacggagtcactgaaacgaaattaccct 311
Query: 367 attgggatgagattcaggatgaggtttgaaggggaagaggcccccgagcagaggtttact 426
|| ||||||||||| | |||||||||||||| |||||||| || ||||| ||||| |||
Sbjct: 312 atagggatgagatttaaaatgaggtttgaaggtgaagaggctccagagcaaaggttcact 371
Query: 427 gg 428
||
Sbjct: 372 gg 373
>gb|BF481720.1|BF481720 FM1_21_E10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 521
Score = 109 bits (55), Expect = 5e-022
Identities = 193/239 (80%)
Strand = Plus / Plus
Query: 190 aatgtaccttcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgca 249
||||| || ||||| || ||||| ||||| ||||||||||| || |||||||| ||||||
Sbjct: 32 aatgttccgtcttcagtaatatcaagccacagcatgcatcttggtgttcttgctactgca 91
Query: 250 tggcacgcgattaacacaaagtccatgttcactgtctactacaagcctaggacgagccct 309
||||| || ||||||| | |||||||||||||||||||||| |||||||| || ||
Sbjct: 92 tggcatgctgttaacactgggaccatgttcactgtctactacaaacctaggacaagtcca 151
Query: 310 tcagagtttatcattccatatgatcaatatatggagtcagtaaaaaacaattattctatt 369
| |||||| | | || | ||||| |||||||||||| | ||| ||||| ||||
Sbjct: 152 gctgagtttgttgtcccctgtgatcgctatatggagtcactgaaacgaaattaccctata 211
Query: 370 gggatgagattcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactgg 428
||||||||||| | |||||||||||||| |||||||| || ||||| ||||| |||||
Sbjct: 212 gggatgagatttaaaatgaggtttgaaggtgaagaggctccagagcaaaggttcactgg 270
>gb|BM322337.1|BM322337 PIC1_3_D06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 388
Score = 101 bits (51), Expect = 1e-019
Identities = 192/239 (80%)
Strand = Plus / Plus
Query: 190 aatgtaccttcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgca 249
||||| || ||||| || ||||| ||||| ||||||||||| || |||||||| ||||||
Sbjct: 49 aatgttccgtcttcagtaatatcaagccacagcatgcatcttggtgttcttgctactgca 108
Query: 250 tggcacgcgattaacacaaagtccatgttcactgtctactacaagcctaggacgagccct 309
||||| || ||||||| | |||||||||||||||||||||| |||||||| || ||
Sbjct: 109 tggcatgctgttaacactgggaccatgttcactgtctactacaaacctaggacaagtcca 168
Query: 310 tcagagtttatcattccatatgatcaatatatggagtcagtaaaaaacaattattctatt 369
| |||||| | | || | ||||| |||| ||||||| | ||| ||||| ||||
Sbjct: 169 gctgagtttgttgtcccctgtgatcgctatacggagtcactgaaacgaaattaccctata 228
Query: 370 gggatgagattcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactgg 428
||||||||||| | |||||||||||||| |||||||| || ||||| ||||| |||||
Sbjct: 229 gggatgagatttaaaatgaggtttgaaggtgaagaggctccagagcaaaggttcactgg 287
>gb|BI098203.1|BI098203 IP1_29_D05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 656
Score = 89.7 bits (45), Expect = 5e-016
Identities = 228/289 (78%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||||||||| |||| ||||| || || ||||| ||| | || |||||| | ||||||
Sbjct: 368 gatctgcatggtgtggaatggcgctttcgtcacatattcagaggtcaaccccgaaggcat 427
Query: 61 ctccttcagagtggttggagtgtttttgtcagttccaaaaggcttgttgctggagacgcc 120
|| | |||||||| |||||||||||||| ||| | || | ||||||||||| || |||
Sbjct: 428 cttttgcagagtggctggagtgtttttgttagtgcaaagcgtcttgttgctggggatgcc 487
Query: 121 ttcattttcctcagaggagaaaacggtgaacttcgagttggtgttaggcgcgctatgagg 180
||||| || || ||||| || || || || || || || || || ||||| || ||||||
Sbjct: 488 ttcatctttctgagaggtgataatggggagctgcgtgtgggagtcaggcgtgccatgagg 547
Query: 181 cagttgtctaatgtaccttcttcggttatatctagccaaagcatgcatctcggggttctt 240
||| | ||||| || ||||| || ||||| ||||| ||||||||||| || | ||||
Sbjct: 548 cagcaagcaaatgttccgtcttcagtaatatcaagccacagcatgcatcttggtggtctt 607
Query: 241 gcgactgcatggcacgcgattaacacaaagtccatgttcactgtctact 289
|| ||||||||||| || ||||||| | ||||||||||||||||||
Sbjct: 608 gctactgcatggcatgctgttaacactgggaccatgttcactgtctact 656
>gb|BM322327.1|BM322327 PIC1_3_B06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 435
Score = 87.7 bits (44), Expect = 2e-015
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 828 cactaattttcagccgagacctgctatgggtaactggatgccattgggaaggcgtgaaac 887
|||||| ||||||| |||||||||||||| || ||||||||| ||||||||||||||||
Sbjct: 9 cactaactttcagcagagacctgctatggatagttggatgccaatgggaaggcgtgaaac 68
Query: 888 tgacttcaagga 899
|||||||||||
Sbjct: 69 ggacttcaagga 80
Score = 65.9 bits (33), Expect = 7e-009
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 918 ggatgcccgcaccncttctcaatcgtttggagatacacannggnnctttatgcaagctta 977
|||||||||||| | |||||||| ||| |||||||||| || ||| |||||||||||
Sbjct: 99 ggatgcccgcactgcctctcaatcatttagagatacacaggggttcttcatgcaagctta 158
Query: 978 tgatgaca 985
||||||||
Sbjct: 159 tgatgaca 166
>gb|BG158321.1|BG158321 EM1_12_E06.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 512
Score = 83.8 bits (42), Expect = 3e-014
Identities = 222/282 (78%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||||||||| |||| ||||| || || ||||| ||| | || |||||| | ||||||
Sbjct: 231 gatctgcatggtgtggaatggcgctttcgtcacatattcagaggtcaaccccgaaggcat 290
Query: 61 ctccttcagagtggttggagtgtttttgtcagttccaaaaggcttgttgctggagacgcc 120
|| | |||||||| |||||||||||||| ||| | || | ||||||||||| || |||
Sbjct: 291 cttttgcagagtggctggagtgtttttgttagtgcaaagcgtcttgttgctggggatgcc 350
Query: 121 ttcattttcctcagaggagaaaacggtgaacttcgagttggtgttaggcgcgctatgagg 180
||||| || || ||||| || || || || || || || || || ||||| || ||||||
Sbjct: 351 ttcatctttctgagaggtgataatggggagctgcgtgtgggagtcaggcgtgccatgagg 410
Query: 181 cagttgtctaatgtaccttcttcggttatatctagccaaagcatgcatctcggggttctt 240
||| | ||||| || ||||| || ||||| ||||| ||||||||||| || ||||||
Sbjct: 411 cagcaagcaaatgttccgtcttcagtaatatcaagccacagcatgcatcttggtgttctt 470
Query: 241 gcgactgcatggcacgcgattaacacaaagtccatgttcact 282
|| ||||||||||| || ||||||| | |||||||||||
Sbjct: 471 gctactgcatggcatgctgttaacactgggaccatgttcact 512
>gb|BI643705.1|BI643705 IP1_56_A06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 488
Score = 83.8 bits (42), Expect = 3e-014
Identities = 111/134 (82%)
Strand = Plus / Plus
Query: 4 ctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcatctc 63
|||||||| || |||||||| ||||| |||||||| || || || || |||| || |||
Sbjct: 120 ctgcatgggattgagtggcggttccgtcacatctttcgaggtcagccacggagacacctc 179
Query: 64 cttcagagtggttggagtgtttttgtcagttccaaaaggcttgttgctggagacgccttc 123
|||||||||||||||||||||||||| || |||| | |||||||| || || ||||||
Sbjct: 180 cttcagagtggttggagtgtttttgttagcgccaagcgtcttgttgcaggggatgccttc 239
Query: 124 attttcctcagagg 137
|| || ||||||||
Sbjct: 240 atatttctcagagg 253
Score = 56.0 bits (28), Expect = 7e-006
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| || ||||| ||||| || |||||||| || ||||||||||| |||||||| ||
Sbjct: 315 tcttcagtcatatcaagccacagtatgcatcttggtgttcttgcgacagcatggcatgca 374
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggac 302
| ||||| | ||||||||||||||||||||||| |||||
Sbjct: 375 gtcaacactgggagtatgttcactgtctactacaagccaaggac 418
>gb|BM324748.1|BM324748 PIC1_35_B08.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 640
Score = 83.8 bits (42), Expect = 3e-014
Identities = 201/254 (79%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||||||||| |||| ||||| || || ||||| ||| | || |||||| | ||||||
Sbjct: 381 gatctgcatggtgtggaatggcgctttcgtcacatattcagaggtcaaccccgaaggcat 440
Query: 61 ctccttcagagtggttggagtgtttttgtcagttccaaaaggcttgttgctggagacgcc 120
|| | |||||||| |||||||||||||| ||| | || | ||||||||||| || |||
Sbjct: 441 cttttgcagagtggctggagtgtttttgttagtgcaaagcgtcttgttgctggggatgcc 500
Query: 121 ttcattttcctcagaggagaaaacggtgaacttcgagttggtgttaggcgcgctatgagg 180
||||| || || ||||| || || || || || || || || || ||||| || ||||||
Sbjct: 501 ttcatctttctgagaggtgataatggggagctgcgtgtgggagtcaggcgtgccatgagg 560
Query: 181 cagttgtctaatgtaccttcttcggttatatctagccaaagcatgcatctcggggttctt 240
||| | ||||| || ||||| || ||||| ||||| ||||||||||| || ||||||
Sbjct: 561 cagcaagcaaatgttccgtcttcagtaatatcaagccacagcatgcatcttggtgttctt 620
Query: 241 gcgactgcatggca 254
|| |||||||||||
Sbjct: 621 gctactgcatggca 634
>gb|BE600084.1|BE600084 PI1_79_B07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 467
Score = 73.8 bits (37), Expect = 3e-011
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 843 gagacctgctatgggtaactggatgccattgggaaggcgtgaaactgacttcaagga 899
|||||||||||||| || ||||||||| |||||||||||||||| |||||||||||
Sbjct: 11 gagacctgctatggatagttggatgccaatgggaaggcgtgaaacggacttcaagga 67
Score = 65.9 bits (33), Expect = 7e-009
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 918 ggatgcccgcaccncttctcaatcgtttggagatacacannggnnctttatgcaagctta 977
|||||||||||| | |||||||| ||| |||||||||| || ||| |||||||||||
Sbjct: 86 ggatgcccgcactgcctctcaatcatttagagatacacaggggttcttcatgcaagctta 145
Query: 978 tgatgaca 985
||||||||
Sbjct: 146 tgatgaca 153
>gb|BM323872.1|BM323872 PIC1_28_F07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 254
Score = 73.8 bits (37), Expect = 3e-011
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 190 aatgtaccttcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgca 249
||||| || ||||| || ||||| ||||| | ||||||||| || |||||||| ||||||
Sbjct: 49 aatgttccgtcttcagtaatatcaagccacaacatgcatcttggtgttcttgctactgca 108
Query: 250 tggcacgcgattaacacaaagtccatgttcactgtctactacaagcctaggac 302
||||| || ||||||| | ||||| |||||||||||||||| ||||||||
Sbjct: 109 tggcatgctgttaacactgggaccatgatcactgtctactacaaacctaggac 161
>gb|CW163532.1|CW163532 104_571_11151512_148_36455_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151512, DNA
sequence
Length = 722
Score = 71.9 bits (36), Expect = 1e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgg 44
||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 256 gatctgcatggcatggagtggcgcttccgccacatctttcgcgg 213
>gb|CW320968.1|CW320968 104_814_11475293_148_35938_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475293, DNA
sequence
Length = 610
Score = 71.9 bits (36), Expect = 1e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgg 44
||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 518 gatctgcatggcatggagtggcgcttccgccacatctttcgcgg 561
>gb|CW447951.1|CW447951 fsbb001f181f02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f181f02, DNA
sequence
Length = 443
Score = 71.9 bits (36), Expect = 1e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgg 44
||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 344 gatctgcatggcatggagtggcgcttccgccacatctttcgcgg 387
>gb|BG464175.1|BG464175 EM1_70_E09.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 537
Score = 63.9 bits (32), Expect = 3e-008
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 919 gatgcccgcaccncttctcaatcgtttggagatacacannggnnctttatgcaagcttat 978
||||||||||| | |||||||| ||| |||||||||| || ||| ||||||||||||
Sbjct: 44 gatgcccgcactgcctctcaatcatttagagatacacaggggttcttcatgcaagcttat 103
Query: 979 gatgaca 985
|||||||
Sbjct: 104 gatgaca 110
>gb|CW113777.1|CW113777 104_488_11105634_148_34562_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105634, DNA
sequence
Length = 528
Score = 60.0 bits (30), Expect = 5e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 61 ctccttcagagtggttggagtgtttttgtcagttccaaaaggcttgttgctggagacgcc 120
||||||||||||||||||||||||||||| || |||| | |||||||| || || |||
Sbjct: 53 ctccttcagagtggttggagtgtttttgttagcgccaagcgtcttgttgcaggggatgcc 112
Query: 121 ttcattttcctcag 134
||||| || |||||
Sbjct: 113 ttcatatttctcag 126
Score = 52.0 bits (26), Expect = 1e-004
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| || ||||| ||||| || |||||||| || ||||||||||| |||||||| ||
Sbjct: 297 tcttcagtcatatcaagccacagtatgcatcttggtgttcttgcgacagcatggcatgca 356
Query: 259 attaacacaaagtccatgttcactgtctactacaagcc 296
| ||||| | |||||||||||||||||||||||
Sbjct: 357 gtcaacactgggagtatgttcactgtctactacaagcc 394
>gb|BE600981.1|BE600981 PI1_95_E03.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 557
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||||||||| |||| ||||| || || ||||| ||| | || |||||| | ||||||
Sbjct: 389 gatctgcatggtgtggaatggcgctttcgtcacatattcagaggtcaaccccgaaggcat 448
Query: 61 ctccttcagagtggttggagtgtttttgtcagttccaaaaggcttgttgctggagacgcc 120
|| | |||||||| |||||||||||||| ||| | || | ||||||||||| || |||
Sbjct: 449 cttttgcagagtggctggagtgtttttgttagtgcaaagcgtcttgttgctggggatgcc 508
Query: 121 ttcat 125
|||||
Sbjct: 509 ttcat 513
>gb|BI076072.1|BI076072 IP1_25_C11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 650
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||||||||| |||| ||||| || || ||||| ||| | || |||||| | ||||||
Sbjct: 519 gatctgcatggtgtggaatggcgctttcgtcacatattcagaggtcaaccccgaaggcat 578
Query: 61 ctccttcagagtggttggagtgtttttgtcagttccaaaaggcttgttgctggagacgcc 120
|| | |||||||| |||||||||||||| ||| | || | ||||||||||| || |||
Sbjct: 579 cttttgcagagtggctggagtgtttttgttagtgcaaagcgtcttgttgctggggatgcc 638
Query: 121 ttcat 125
|||||
Sbjct: 639 ttcat 643
>gb|BM325683.1|BM325683 PIC1_47_E07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 541
Score = 56.0 bits (28), Expect = 7e-006
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| || ||||| ||||| || |||||||| || ||||||||||| |||||||| ||
Sbjct: 24 tcttcagtcatatcaagccacagtatgcatcttggtgttcttgcgacagcatggcatgca 83
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggac 302
| ||||| | ||||||||||||||||||||||| |||||
Sbjct: 84 gtcaacactgggagtatgttcactgtctactacaagccaaggac 127
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 358 aattattctattgggatgagattcaggatgaggtttgaaggggaagaggcccccgagcag 417
|||||||| || ||||||||||| | |||||| |||||||| ||||| || | |||||
Sbjct: 183 aattattcaatagggatgagatttaagatgagatttgaaggtgaagaagcagcagagcaa 242
Query: 418 aggtttactggtacaatagttgg 440
|| || ||||| |||||||||||
Sbjct: 243 agattcactggcacaatagttgg 265
>gb|BM325852.1|BM325852 PIC1_53_F03.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 432
Score = 56.0 bits (28), Expect = 7e-006
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| || ||||| ||||| || |||||||| || ||||||||||| |||||||| ||
Sbjct: 24 tcttcagtcatatcaagccacagtatgcatcttggtgttcttgcgacagcatggcatgca 83
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggac 302
| ||||| | ||||||||||||||||||||||| |||||
Sbjct: 84 gtcaacactgggagtatgttcactgtctactacaagccaaggac 127
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 358 aattattctattgggatgagattcaggatgaggtttgaaggggaagaggcccccgagcag 417
|||||||| || ||||||||||| | |||||| |||||||| ||||| || | |||||
Sbjct: 183 aattattcaatagggatgagatttaagatgagatttgaaggtgaagaagcagcagagcaa 242
Query: 418 aggtttactggtacaatagttgg 440
|| || ||||| |||||||||||
Sbjct: 243 agattcactggcacaatagttgg 265
>gb|AW287591.2|AW287591 LG1_244_A08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 299
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 358 aattattctattgggatgagattcaggatgaggtttgaaggggaagaggcccccgagcag 417
|||||||| || ||||||||||| | |||||| |||||||| ||||| || | |||||
Sbjct: 142 aattattcaatagggatgagatttaagatgagatttgaaggtgaagaagcagcagagcaa 201
Query: 418 aggtttactggtacaatagttgg 440
|| || ||||| |||||||||||
Sbjct: 202 agattcactggcacaatagttgg 224
Score = 50.1 bits (25), Expect = 4e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 274 atgttcactgtctactacaagcctaggac 302
||||||||||||||||||||||| |||||
Sbjct: 58 atgttcactgtctactacaagccaaggac 86
>gb|BG947248.1|BG947248 IP1_3_C08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 496
Score = 54.0 bits (27), Expect = 3e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 358 aattattctattgggatgagattcaggatgaggtttgaaggggaagaggcccccgagcag 417
|||||||| || ||||||||||| | |||||| |||||||| ||||| || | |||||
Sbjct: 18 aattattcaatagggatgagatttaagatgagatttgaaggtgaagaagcagcagagcaa 77
Query: 418 aggtttactggtacaatagttgg 440
|| || ||||| |||||||||||
Sbjct: 78 agattcactggcacaatagttgg 100
>gb|BE365314.1|BE365314 PI1_26_G10.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 544
Score = 50.1 bits (25), Expect = 4e-004
Identities = 100/125 (80%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||||||||| |||| ||||| || || ||||| ||| | || |||||| | ||||||
Sbjct: 389 gatctgcatggtgtggaatggcgctttcgtcacatattcagaggtcaaccccgaaggcat 448
Query: 61 ctccttcagagtggttggagtgtttttgtcagttccaaaaggcttgttgctggagacgcc 120
|| |||||||| |||||||||||||| ||| | || | ||||||||||| || |||
Sbjct: 449 ctttggcagagtggctggagtgtttttgttagtgcaaagcgtcttgttgctggggatgcc 508
Query: 121 ttcat 125
|||||
Sbjct: 509 ttcat 513
>gb|BG357738.1|BG357738 OV2_29_G02.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 530
Score = 50.1 bits (25), Expect = 4e-004
Identities = 91/113 (80%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||||||||| |||| ||||| || || ||||| ||| | || |||||| | ||||||
Sbjct: 364 gatctgcatggtgtggaatggcgctttcgtcacatattcagaggtcaaccccgaaggcat 423
Query: 61 ctccttcagagtggttggagtgtttttgtcagttccaaaaggcttgttgctgg 113
|| | |||||||| |||||||||||||| ||| | || | |||||||||||
Sbjct: 424 cttttgcagagtggctggagtgtttttgttagtgcaaagcgtcttgttgctgg 476
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 222,566
Number of Sequences: 832831
Number of extensions: 222566
Number of successful extensions: 58462
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58321
Number of HSP's gapped (non-prelim): 128
length of query: 1095
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1075
effective length of database: 474,703,049
effective search space: 510305777675
effective search space used: 510305777675
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)