BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750753.2.1
(1126 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG560027.1|BG560027 RHIZ2_68_E09.b1_A003 Rhizome2 (RHIZ2... 906 0.0
gb|BF481720.1|BF481720 FM1_21_E10.b1_A003 Floral-Induced Me... 831 0.0
gb|BF176910.1|BF176910 EM1_4_C02.b1_A002 Embryo 1 (EM1) Sor... 761 0.0
gb|BI098203.1|BI098203 IP1_29_D05.b1_A002 Immature pannicle... 728 0.0
gb|BG158321.1|BG158321 EM1_12_E06.b1_A002 Embryo 1 (EM1) So... 722 0.0
gb|BF587101.1|BF587101 FM1_32_C01.b1_A003 Floral-Induced Me... 694 0.0
gb|BM324748.1|BM324748 PIC1_35_B08.b1_A002 Pathogen-infecte... 676 0.0
gb|BG558795.1|BG558795 RHIZ2_56_F08.b1_A003 Rhizome2 (RHIZ2... 656 0.0
gb|BM322337.1|BM322337 PIC1_3_D06.b1_A002 Pathogen-infected... 624 e-177
gb|BM325182.1|BM325182 PIC1_41_F08.b1_A002 Pathogen-infecte... 581 e-164
gb|BE600981.1|BE600981 PI1_95_E03.b1_A002 Pathogen induced ... 521 e-146
gb|BG357738.1|BG357738 OV2_29_G02.b1_A002 Ovary 2 (OV2) Sor... 502 e-140
gb|BE365314.1|BE365314 PI1_26_G10.b1_A002 Pathogen induced ... 496 e-138
gb|BE598866.1|BE598866 PI1_83_D12.b1_A002 Pathogen induced ... 492 e-137
gb|BI076072.1|BI076072 IP1_25_C11.b1_A002 Immature pannicle... 478 e-133
gb|BM325307.1|BM325307 PIC1_43_H04.b1_A002 Pathogen-infecte... 436 e-120
gb|BM323872.1|BM323872 PIC1_28_F07.b1_A002 Pathogen-infecte... 347 1e-093
gb|BG947802.1|BG947802 IP1_5_C11.b1_A002 Immature pannicle ... 315 5e-084
gb|BM325683.1|BM325683 PIC1_47_E07.b1_A002 Pathogen-infecte... 254 2e-065
gb|BM325852.1|BM325852 PIC1_53_F03.b1_A002 Pathogen-infecte... 254 2e-065
gb|BI643705.1|BI643705 IP1_56_A06.b1_A002 Immature pannicle... 240 2e-061
gb|BG412918.1|BG412918 OV2_36_E05.b1_A002 Ovary 2 (OV2) Sor... 234 1e-059
gb|BE599494.1|BE599494 PI1_88_C01.b1_A002 Pathogen induced ... 230 2e-058
gb|BE596258.1|BE596258 PI1_51_E04.b1_A002 Pathogen induced ... 224 1e-056
gb|AW287591.2|AW287591 LG1_244_A08.b1_A002 Light Grown 1 (L... 165 1e-038
gb|BG947248.1|BG947248 IP1_3_C08.b1_A002 Immature pannicle ... 149 7e-034
gb|CW113777.1|CW113777 104_488_11105634_148_34562_075 Sorgh... 137 2e-030
gb|BF656977.1|BF656977 OV2_19_E01.b1_A002 Ovary 2 (OV2) Sor... 133 4e-029
gb|BM326395.1|BM326395 PIC1_56_E07.b1_A002 Pathogen-infecte... 96 8e-018
gb|CW113776.1|CW113776 104_488_11105634_116_34558_075 Sorgh... 84 3e-014
gb|BG948513.1|BG948513 IP1_10_F03.b1_A002 Immature pannicle... 80 5e-013
gb|BI141013.1|BI141013 IP1_42_A10.b1_A002 Immature pannicle... 78 2e-012
gb|CN151666.1|CN151666 WOUND1_76_G05.g1_A002 Wounded leaves... 68 2e-009
gb|CL170980.1|CL170980 104_372_10889083_148_31778_139 Sorgh... 62 1e-007
gb|CW221255.1|CW221255 104_656_11197801_116_37452_011 Sorgh... 62 1e-007
gb|CW320967.1|CW320967 104_814_11475293_116_35934_029 Sorgh... 62 1e-007
gb|CL176668.1|CL176668 104_383_10893279_116_31773_111 Sorgh... 60 5e-007
gb|CW052647.1|CW052647 104_292_10515599_114_30188 Sorghum m... 60 5e-007
gb|CW052648.1|CW052648 104_292_10515599_114_30286 Sorghum m... 60 5e-007
gb|CW052649.1|CW052649 104_292_10515599_115_30187 Sorghum m... 60 5e-007
gb|CW052650.1|CW052650 104_292_10515599_115_30287 Sorghum m... 60 5e-007
gb|BI140057.1|BI140057 IP1_49_D09.b1_A002 Immature pannicle... 60 5e-007
gb|BI140442.1|BI140442 IP1_49_D09.b2_A002 Immature pannicle... 60 5e-007
gb|BF585996.1|BF585996 FM1_33_B09.b1_A003 Floral-Induced Me... 58 2e-006
gb|BF587183.1|BF587183 FM1_33_B09.b2_A003 Floral-Induced Me... 58 2e-006
gb|CW447952.1|CW447952 fsbb001f181f02k0 Sorghum methylation... 54 3e-005
gb|CD223413.1|CD223413 CCC1_27_B07.g1_A007 Callus culture/c... 54 3e-005
gb|CW163532.1|CW163532 104_571_11151512_148_36455_028 Sorgh... 52 1e-004
gb|CW320968.1|CW320968 104_814_11475293_148_35938_029 Sorgh... 52 1e-004
gb|CW447951.1|CW447951 fsbb001f181f02f0 Sorghum methylation... 52 1e-004
gb|CW452453.1|CW452453 fsbb001f192p18k0 Sorghum methylation... 52 1e-004
gb|CD228392.1|CD228392 CCC1_7_C10.g1_A007 Callus culture/ce... 52 1e-004
gb|BI246009.1|BI246009 IP1_66_E04.b1_A002 Immature pannicle... 50 4e-004
gb|CF432143.1|CF432143 NIT1_14_E09.g1_A002 Nitrogen-deficie... 50 4e-004
gb|CW064113.1|CW064113 104_310_10522384_115_30146 Sorghum m... 44 0.028
gb|CW097437.1|CW097437 104_463_11002456_148_34359_056 Sorgh... 42 0.11
gb|CB926943.1|CB926943 ABA1_11_H08.b1_A012 Abscisic acid-tr... 42 0.11
gb|CX611361.1|CX611361 ANR1_24_E10.b1_A002 Anaerobic roots ... 42 0.11
gb|CW154141.1|CW154141 104_556_11145426_116_36351_077 Sorgh... 40 0.43
gb|CW154142.1|CW154142 104_556_11145426_148_36352_077 Sorgh... 40 0.43
>gb|BG560027.1|BG560027 RHIZ2_68_E09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 562
Score = 906 bits (457), Expect = 0.0
Identities = 533/556 (95%), Gaps = 3/556 (0%)
Strand = Plus / Plus
Query: 230 agaggtcaaccacgaaggcatcttttgcagagtggctggagtgtttttgttagtgccaag 289
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 agaggtcaaccccgaaggcatcttttgcagagtggctggagtgtttttgttagtgccaag 68
Query: 290 cgtcttggtgctggagatgccttcatctttctaagaggtgatagtggggagcttcgtgta 349
||||||| |||||| ||||||||||||||||| |||||||||| ||||||||| |||||
Sbjct: 69 cgtcttgttgctggggatgccttcatctttctgagaggtgataatggggagctgcgtgtg 128
Query: 350 ggagtcaggcgtgccatgaggcagcaagcaaatgttccatcttcagtaatatcaagccac 409
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 129 ggagtcaggcgtgccatgaggcagcaagcaaatgttccgtcttcagtaatatcaagccac 188
Query: 410 agcatgcatcttggtgttcttgctacagcatggcatgctgttaacactgggaccatgttt 469
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 189 agcatgcatcttggtgttcttgctactgcatggcatgctgttaacactgggaccatgttc 248
Query: 470 actgtctactacaagcctaggacaagtctccagctgagtttgttgttccctgtgatcgct 529
|||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 249 actgtctactacaaacctaggacaag--tccagctgagtttgttgtcccctgtgatcgct 306
Query: 530 atatggaatcactgaaacgaaattaccctatagggatgagatttaaaatgaggttt-aag 588
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 307 atatggagtcactgaaacgaaattaccctatagggatgagatttaaaatgaggtttgaag 366
Query: 589 gtgaagaggctccagaacaaaggttcactgggaccattgttggaaatgtggatcctgatc 648
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 367 gtgaagaggctccagagcaaaggttcactgggacgattgttggaaatgtggatcctgaac 426
Query: 649 aagctggatgggctgaatctaaatggcgttacctcaaggtgaggtgggatgaagcttcct 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aagctggatgggctgaatctaaatggcgttacctcaaggtgaggtgggatgaagcttcct 486
Query: 709 ccattccacgtcctgaaagggtttctccctggcaaatagaacctgcagtcagccctcccc 768
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 487 ccattccacgtcctgaaagggtttctccttggcaaatagaacctgcagtcagccctcccc 546
Query: 769 ctatcaacccgcttcc 784
|| |||| || |||||
Sbjct: 547 ctgtcaatccacttcc 562
>gb|BF481720.1|BF481720 FM1_21_E10.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 521
Score = 831 bits (419), Expect = 0.0
Identities = 498/522 (95%), Gaps = 3/522 (0%)
Strand = Plus / Plus
Query: 350 ggagtcaggcgtgccatgaggcagcaagcaaatgttccatcttcagtaatatcaagccac 409
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2 ggagtcaggcgtgccatgaggcagcaagcaaatgttccgtcttcagtaatatcaagccac 61
Query: 410 agcatgcatcttggtgttcttgctacagcatggcatgctgttaacactgggaccatgttt 469
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 62 agcatgcatcttggtgttcttgctactgcatggcatgctgttaacactgggaccatgttc 121
Query: 470 actgtctactacaagcctaggacaagtctccagctgagtttgttgttccctgtgatcgct 529
|||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 122 actgtctactacaaacctaggacaagtc--cagctgagtttgttgtcccctgtgatcgct 179
Query: 530 atatggaatcactgaaacgaaattaccctatagggatgagatttaaaatgaggttt-aag 588
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 180 atatggagtcactgaaacgaaattaccctatagggatgagatttaaaatgaggtttgaag 239
Query: 589 gtgaagaggctccagaacaaaggttcactgggaccattgttggaaatgtggatcctgatc 648
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 240 gtgaagaggctccagagcaaaggttcactgggacgattgttggaaatgtggatcctgaac 299
Query: 649 aagctggatgggctgaatctaaatggcgttacctcaaggtgaggtgggatgaagcttcct 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aagctggatgggctgaatctaaatggcgttacctcaaggtgaggtgggatgaagcttcct 359
Query: 709 ccattccacgtcctgaaagggtttctccctggcaaatagaacctgcagtcagccctcccc 768
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 360 ccattccacgtcctgaaagggtttctccttggcaaatagaacctgcagtcagccctcccc 419
Query: 769 ctatcaacccgcttccagtgcacagacccaagagaccgcgctctaatgctgtagcttctc 828
|| |||| || |||||||| ||||| |||||||| || ||||||||||||||| ||||||
Sbjct: 420 ctgtcaatccacttccagtacacaggcccaagaggcctcgctctaatgctgtatcttctc 479
Query: 829 tgcccgagtcttcagctccaacaaaagaagctgctccaaagg 870
|| | |||||||||||||||||||||||||||||||| ||||
Sbjct: 480 tggctgagtcttcagctccaacaaaagaagctgctccgaagg 521
>gb|BF176910.1|BF176910 EM1_4_C02.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 469
Score = 761 bits (384), Expect = 0.0
Identities = 451/471 (95%), Gaps = 3/471 (0%)
Strand = Plus / Plus
Query: 246 ggcatcttttgcagagtggctggagtgtttttgttagtgccaagcgtcttggtgctggag 305
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
Sbjct: 1 ggcatcttttgcagagtggctggagtgtttttgttagtgcaaagcgtcttgttgctgggg 60
Query: 306 atgccttcatctttctaagaggtgatagtggggagcttcgtgtaggagtcaggcgtgcca 365
|||||||||||||||| |||||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 61 atgccttcatctttctgagaggtgataatggggagctgcgtgtgggagtcaggcgtgcca 120
Query: 366 tgaggcagcaagcaaatgttccatcttcagtaatatcaagccacagcatgcatcttggtg 425
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgaggcagcaagcaaatgttccgtcttcagtaatatcaagccacagcatgcatcttggtg 180
Query: 426 ttcttgctacagcatggcatgctgttaacactgggaccatgtttactgtctactacaagc 485
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 181 ttcttgctactgcatggcatgctgttaacactgggaccatgttcactgtctactacaaac 240
Query: 486 ctaggacaagtctccagctgagtttgttgttccctgtgatcgctatatggaatcactgaa 545
|||||||||| |||||||||||||||||| |||||||||||||||| ||| ||||||||
Sbjct: 241 ctaggacaag--tccagctgagtttgttgtcccctgtgatcgctatacggagtcactgaa 298
Query: 546 acgaaattaccctatagggatgagatttaaaatgaggttt-aaggtgaagaggctccaga 604
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 299 acgaaattaccctatagggatgagatttaaaatgaggtttgaaggtgaagaggctccaga 358
Query: 605 acaaaggttcactgggaccattgttggaaatgtggatcctgatcaagctggatgggctga 664
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 359 gcaaaggttcactgggacgattgttggaaatgtggatcctgaacaagctggatgggctga 418
Query: 665 atctaaatggcgttacctcaaggtgaggtgggatgaagcttcctccattcc 715
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 atctaaatggcgttacctcaaggtgaggtgggatgaagcttcctccattcc 469
>gb|BI098203.1|BI098203 IP1_29_D05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 656
Score = 728 bits (367), Expect = 0.0
Identities = 448/475 (94%)
Strand = Plus / Plus
Query: 5 gaggagatgcctgcttcacctcctgctgcacttgcaaggccacgcgtgcactccttctgc 64
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 182 gaggagatgcctgctgcacctcctgctgcacttgcaaggccacgtgtgcactccttctgc 241
Query: 65 aagacattgacagcctctgataccagcactcatggtggattctcggtgctgcggcgccat 124
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct: 242 aagacattgacagcctctgacaccagcacacatggtggtttctcggtgctgcgtcgccat 301
Query: 125 gcagatgagtgtcttccgccactggatatgacccgtcaacctccaacacaagagcttgta 184
|||||||| || ||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct: 302 gcagatgaatgccttccaccgctggatatgagtcgtcaacctccaacacaagagcttgtg 361
Query: 185 gccaaggacctgcatggtgtggaatggcgctttcgccacatattcagaggtcaaccacga 244
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 362 gccaaggatctgcatggtgtggaatggcgctttcgtcacatattcagaggtcaaccccga 421
Query: 245 aggcatcttttgcagagtggctggagtgtttttgttagtgccaagcgtcttggtgctgga 304
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 422 aggcatcttttgcagagtggctggagtgtttttgttagtgcaaagcgtcttgttgctggg 481
Query: 305 gatgccttcatctttctaagaggtgatagtggggagcttcgtgtaggagtcaggcgtgcc 364
||||||||||||||||| |||||||||| ||||||||| ||||| |||||||||||||||
Sbjct: 482 gatgccttcatctttctgagaggtgataatggggagctgcgtgtgggagtcaggcgtgcc 541
Query: 365 atgaggcagcaagcaaatgttccatcttcagtaatatcaagccacagcatgcatcttggt 424
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 542 atgaggcagcaagcaaatgttccgtcttcagtaatatcaagccacagcatgcatcttggt 601
Query: 425 gttcttgctacagcatggcatgctgttaacactgggaccatgtttactgtctact 479
| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 602 ggtcttgctactgcatggcatgctgttaacactgggaccatgttcactgtctact 656
>gb|BG158321.1|BG158321 EM1_12_E06.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 512
Score = 722 bits (364), Expect = 0.0
Identities = 439/464 (94%)
Strand = Plus / Plus
Query: 5 gaggagatgcctgcttcacctcctgctgcacttgcaaggccacgcgtgcactccttctgc 64
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 45 gaggagatgcctgctgcacctcctgctgcacttgcaaggccacgtgtgcactccttctgc 104
Query: 65 aagacattgacagcctctgataccagcactcatggtggattctcggtgctgcggcgccat 124
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct: 105 aagacattgacagcctctgacaccagcacacatggtggtttctcggtgctgcgtcgccat 164
Query: 125 gcagatgagtgtcttccgccactggatatgacccgtcaacctccaacacaagagcttgta 184
|||||||| || ||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct: 165 gcagatgaatgccttccaccgctggatatgagtcgtcaacctccaacacaagagcttgtg 224
Query: 185 gccaaggacctgcatggtgtggaatggcgctttcgccacatattcagaggtcaaccacga 244
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 225 gccaaggatctgcatggtgtggaatggcgctttcgtcacatattcagaggtcaaccccga 284
Query: 245 aggcatcttttgcagagtggctggagtgtttttgttagtgccaagcgtcttggtgctgga 304
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 285 aggcatcttttgcagagtggctggagtgtttttgttagtgcaaagcgtcttgttgctggg 344
Query: 305 gatgccttcatctttctaagaggtgatagtggggagcttcgtgtaggagtcaggcgtgcc 364
||||||||||||||||| |||||||||| ||||||||| ||||| |||||||||||||||
Sbjct: 345 gatgccttcatctttctgagaggtgataatggggagctgcgtgtgggagtcaggcgtgcc 404
Query: 365 atgaggcagcaagcaaatgttccatcttcagtaatatcaagccacagcatgcatcttggt 424
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 405 atgaggcagcaagcaaatgttccgtcttcagtaatatcaagccacagcatgcatcttggt 464
Query: 425 gttcttgctacagcatggcatgctgttaacactgggaccatgtt 468
||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 465 gttcttgctactgcatggcatgctgttaacactgggaccatgtt 508
>gb|BF587101.1|BF587101 FM1_32_C01.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 512
Score = 694 bits (350), Expect = 0.0
Identities = 461/498 (92%)
Strand = Plus / Plus
Query: 629 tggaaatgtggatcctgatcaagctggatgggctgaatctaaatggcgttacctcaaggt 688
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 tggaaatgtggatcctgaacaagctggatgggctgaatctaaatggcgttacctcaaggt 68
Query: 689 gaggtgggatgaagcttcctccattccacgtcctgaaagggtttctccctggcaaataga 748
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 69 gaggtgggatgaagcttcctccattccacgtcctgaaagggtttctccttggcaaataga 128
Query: 749 acctgcagtcagccctccccctatcaacccgcttccagtgcacagacccaagagaccgcg 808
|||||||||||||||||||||| |||| || |||||||| ||||| |||||||| || ||
Sbjct: 129 acctgcagtcagccctccccctgtcaatccacttccagtacacaggcccaagaggcctcg 188
Query: 809 ctctaatgctgtagcttctctgcccgagtcttcagctccaacaaaagaagctgctccaaa 868
||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct: 189 ctctaatgctgtatcttctctggctgagtcttcagctccaacaaaagaagctgctccgaa 248
Query: 869 ggtcacattagagactcaacaacatgccctgcaaaggcccttgcagacccaggataatgt 928
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ggtcacattagagactcaacaacatgccctgcaaaggcccttgcagacccaggataatgc 308
Query: 929 ggccccgaaaagtgtttttggtgataacagtgaattggactctgctcataagtcctccct 988
|||||| |||||| |||||||||||||||||| |||||| ||||||||||||| ||||
Sbjct: 309 ggccccaaaaagtagttttggtgataacagtgagttggacgctgctcataagtcagccct 368
Query: 989 gcgaccgtcaggttttgatctggacaagagcaccattggcatgcagaggaagctgggttc 1048
|||||| ||||| |||||||| || |||| ||||||||||||||||||||||||||||||
Sbjct: 369 gcgaccatcagggtttgatctagagaagaacaccattggcatgcagaggaagctgggttc 428
Query: 1049 agatatttggatgcgaatgaacaggcctgatggttacagtgaaatgttatcgggatatca 1108
||||| |||||||| |||||||| ||||| || |||| |||| ||||||| ||||||||
Sbjct: 429 agatagttggatgcatatgaacagacctgaaggatacaatgaattgttatctggatatca 488
Query: 1109 accacctaatgaagatgt 1126
|| ||||||| |||||||
Sbjct: 489 acaacctaataaagatgt 506
>gb|BM324748.1|BM324748 PIC1_35_B08.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 640
Score = 676 bits (341), Expect = 0.0
Identities = 419/445 (94%)
Strand = Plus / Plus
Query: 5 gaggagatgcctgcttcacctcctgctgcacttgcaaggccacgcgtgcactccttctgc 64
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 195 gaggagatgcctgctgcacctcctgctgcacttgcaaggccacgtgtgcactccttctgc 254
Query: 65 aagacattgacagcctctgataccagcactcatggtggattctcggtgctgcggcgccat 124
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct: 255 aagacattgacagcctctgacaccagcacacatggtggtttctcggtgctgcgtcgccat 314
Query: 125 gcagatgagtgtcttccgccactggatatgacccgtcaacctccaacacaagagcttgta 184
|||||||| || ||||| || |||||||||| |||||||||||| |||||||||||||
Sbjct: 315 gcagatgaatgccttccaccgctggatatgagtcgtcaacctccagcacaagagcttgtg 374
Query: 185 gccaaggacctgcatggtgtggaatggcgctttcgccacatattcagaggtcaaccacga 244
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 375 gccaaggatctgcatggtgtggaatggcgctttcgtcacatattcagaggtcaaccccga 434
Query: 245 aggcatcttttgcagagtggctggagtgtttttgttagtgccaagcgtcttggtgctgga 304
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 435 aggcatcttttgcagagtggctggagtgtttttgttagtgcaaagcgtcttgttgctggg 494
Query: 305 gatgccttcatctttctaagaggtgatagtggggagcttcgtgtaggagtcaggcgtgcc 364
||||||||||||||||| |||||||||| ||||||||| ||||| |||||||||||||||
Sbjct: 495 gatgccttcatctttctgagaggtgataatggggagctgcgtgtgggagtcaggcgtgcc 554
Query: 365 atgaggcagcaagcaaatgttccatcttcagtaatatcaagccacagcatgcatcttggt 424
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 555 atgaggcagcaagcaaatgttccgtcttcagtaatatcaagccacagcatgcatcttggt 614
Query: 425 gttcttgctacagcatggcatgctg 449
||||||||||| |||||||||||||
Sbjct: 615 gttcttgctactgcatggcatgctg 639
>gb|BG558795.1|BG558795 RHIZ2_56_F08.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 440
Score = 656 bits (331), Expect = 0.0
Identities = 403/427 (94%)
Strand = Plus / Plus
Query: 63 gcaagacattgacagcctctgataccagcactcatggtggattctcggtgctgcggcgcc 122
|||||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||
Sbjct: 14 gcaagacattgacagcctctgacaccagcacacatggtggtttctcggtgctgcgtcgcc 73
Query: 123 atgcagatgagtgtcttccgccactggatatgacccgtcaacctccaacacaagagcttg 182
|||||||||| || ||||| || |||||||||| |||||||||||||||||||||||||
Sbjct: 74 atgcagatgaatgccttccaccgctggatatgagtcgtcaacctccaacacaagagcttg 133
Query: 183 tagccaaggacctgcatggtgtggaatggcgctttcgccacatattcagaggtcaaccac 242
| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 134 tggccaaggatctgcatggtgtggaatggcgctttcgtcacatattcagaggtcaacccc 193
Query: 243 gaaggcatcttttgcagagtggctggagtgtttttgttagtgccaagcgtcttggtgctg 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 194 gaaggcatcttttgcagagtggctggagtgtttttgttagtgccaagcgtcttgttgctg 253
Query: 303 gagatgccttcatctttctaagaggtgatagtggggagcttcgtgtaggagtcaggcgtg 362
| ||||||||||||||||| |||||||||| ||||||||| ||||| |||||||||||||
Sbjct: 254 gggatgccttcatctttctgagaggtgataatggggagctgcgtgtgggagtcaggcgtg 313
Query: 363 ccatgaggcagcaagcaaatgttccatcttcagtaatatcaagccacagcatgcatcttg 422
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 314 ccatgaggcagcaagcaaatgttccgtcttcagtaatatcaagccacagcatgcatcttg 373
Query: 423 gtgttcttgctacagcatggcatgctgttaacactgggaccatgtttactgtctactaca 482
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 374 gtgttcttgctactgcatggcatgctgttaacactgggaccatgttcactgtctactaca 433
Query: 483 agcctag 489
| |||||
Sbjct: 434 aacctag 440
>gb|BM322337.1|BM322337 PIC1_3_D06.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 388
Score = 624 bits (315), Expect = e-177
Identities = 364/378 (96%), Gaps = 3/378 (0%)
Strand = Plus / Plus
Query: 344 cgtgtaggagtcaggcgtgccatgaggcagcaagcaaatgttccatcttcagtaatatca 403
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 13 cgtgtgggagtcaggcgtgccatgaggcagcaagcaaatgttccgtcttcagtaatatca 72
Query: 404 agccacagcatgcatcttggtgttcttgctacagcatggcatgctgttaacactgggacc 463
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 73 agccacagcatgcatcttggtgttcttgctactgcatggcatgctgttaacactgggacc 132
Query: 464 atgtttactgtctactacaagcctaggacaagtctccagctgagtttgttgttccctgtg 523
||||| |||||||||||||| ||||||||||| |||||||||||||||||| |||||||
Sbjct: 133 atgttcactgtctactacaaacctaggacaag--tccagctgagtttgttgtcccctgtg 190
Query: 524 atcgctatatggaatcactgaaacgaaattaccctatagggatgagatttaaaatgaggt 583
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 atcgctatacggagtcactgaaacgaaattaccctatagggatgagatttaaaatgaggt 250
Query: 584 tt-aaggtgaagaggctccagaacaaaggttcactgggaccattgttggaaatgtggatc 642
|| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 251 ttgaaggtgaagaggctccagagcaaaggttcactgggacgattgttggaaatgtggatc 310
Query: 643 ctgatcaagctggatgggctgaatctaaatggcgttacctcaaggtgaggtgggatgaag 702
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctgaacaagctggatgggctgaatctaaatggcgttacctcaaggtgaggtgggatgaag 370
Query: 703 cttcctccattccacgtc 720
||||||||||||||||||
Sbjct: 371 cttcctccattccacgtc 388
>gb|BM325182.1|BM325182 PIC1_41_F08.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 602
Score = 581 bits (293), Expect = e-164
Identities = 392/425 (92%)
Strand = Plus / Plus
Query: 702 gcttcctccattccacgtcctgaaagggtttctccctggcaaatagaacctgcagtcagc 761
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 9 gcttcctccattccacgtcctgaaagggtttctccttggcaaatagaacctgcagtcagc 68
Query: 762 cctccccctatcaacccgcttccagtgcacagacccaagagaccgcgctctaatgctgta 821
||||||||| |||| || |||||||| ||||| |||||||| || |||||||||||||||
Sbjct: 69 cctccccctgtcaatccacttccagtacacaggcccaagaggcctcgctctaatgctgta 128
Query: 822 gcttctctgcccgagtcttcagctccaacaaaagaagctgctccaaaggtcacattagag 881
||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 129 gcttctctggctgagtcttcagctccaacaaaagaagctgctccgaaggtcacattagag 188
Query: 882 actcaacaacatgccctgcaaaggcccttgcagacccaggataatgtggccccgaaaagt 941
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 189 actcaacaacatgccctgcaaaggcccttgcagacccaggataatgcggccccaaaaagt 248
Query: 942 gtttttggtgataacagtgaattggactctgctcataagtcctccctgcgaccgtcaggt 1001
| |||||||||||||||||| |||||| ||||||||||||| |||||||||| |||||
Sbjct: 249 ggttttggtgataacagtgagttggacgctgctcataagtcagccctgcgaccatcaggg 308
Query: 1002 tttgatctggacaagagcaccattggcatgcagaggaagctgggttcagatatttggatg 1061
|||||||| || |||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 309 tttgatctagagaagaacaccattggcatgcagaggaagctgggttcagatagttggatg 368
Query: 1062 cgaatgaacaggcctgatggttacagtgaaatgttatcgggatatcaaccacctaatgaa 1121
| |||||||| ||||| || |||| |||||||||||| |||||||||| ||||||| ||
Sbjct: 369 catatgaacagacctgaaggatacaatgaaatgttatctggatatcaacaacctaataaa 428
Query: 1122 gatgt 1126
|||||
Sbjct: 429 gatgt 433
>gb|BE600981.1|BE600981 PI1_95_E03.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 557
Score = 521 bits (263), Expect = e-146
Identities = 332/355 (93%)
Strand = Plus / Plus
Query: 5 gaggagatgcctgcttcacctcctgctgcacttgcaaggccacgcgtgcactccttctgc 64
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 203 gaggagatgcctgctgcacctcctgctgcacttgcaaggccacgtgtgcactccttctgc 262
Query: 65 aagacattgacagcctctgataccagcactcatggtggattctcggtgctgcggcgccat 124
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct: 263 aagacattgacagcctctgacaccagcacacatggtggtttctcggtgctgcgtcgccat 322
Query: 125 gcagatgagtgtcttccgccactggatatgacccgtcaacctccaacacaagagcttgta 184
|||||||| || ||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct: 323 gcagatgaatgccttccaccgctggatatgagtcgtcaacctccaacacaagagcttgtg 382
Query: 185 gccaaggacctgcatggtgtggaatggcgctttcgccacatattcagaggtcaaccacga 244
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 383 gccaaggatctgcatggtgtggaatggcgctttcgtcacatattcagaggtcaaccccga 442
Query: 245 aggcatcttttgcagagtggctggagtgtttttgttagtgccaagcgtcttggtgctgga 304
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 443 aggcatcttttgcagagtggctggagtgtttttgttagtgcaaagcgtcttgttgctggg 502
Query: 305 gatgccttcatctttctaagaggtgatagtggggagcttcgtgtaggagtcaggc 359
||||||||||||||||| |||||||||| ||||||||| ||||| ||||||||||
Sbjct: 503 gatgccttcatctttctgagaggtgataatggggagctgcgtgtgggagtcaggc 557
>gb|BG357738.1|BG357738 OV2_29_G02.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 530
Score = 502 bits (253), Expect = e-140
Identities = 329/353 (93%), Gaps = 1/353 (0%)
Strand = Plus / Plus
Query: 5 gaggagatgcctgcttcacctcctgctgcacttgcaaggccacgcgtgcactccttctgc 64
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 178 gaggagatgcctgctgcacctcctgctgcacttgcaaggccacgtgtgcactccttctgc 237
Query: 65 aagacattgacagcctctgataccagcactcatggtggattctcggtgctgcggcgccat 124
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct: 238 aagacattgacagcctctgacaccagcacacatggtggtttctcggtgctgcgtcgccat 297
Query: 125 gcagatgagtgtcttccgccactggatatgacccgtcaacctccaacacaagagcttgta 184
|||||||| || ||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct: 298 gcagatgaatgccttccaccgctggatatgagtcgtcaacctccaacacaagagcttgtg 357
Query: 185 gccaaggacctgcatggtgtggaatggcgctttcgccacatattcagaggtcaaccacga 244
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 358 gccaaggatctgcatggtgtggaatggcgctttcgtcacatattcagaggtcaaccccga 417
Query: 245 aggcatcttttgcagagtggctggagtgtttttgttagtgccaagcgtcttggtgct-gg 303
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||
Sbjct: 418 aggcatcttttgcagagtggctggagtgtttttgttagtgcaaagcgtcttgttgctggg 477
Query: 304 agatgccttcatctttctaagaggtgatagtggggagcttcgtgtaggagtca 356
||||||||||||||||| |||||||||| ||||||||| ||||| |||||||
Sbjct: 478 ggatgccttcatctttctgagaggtgataatggggagctgcgtgtgggagtca 530
>gb|BE365314.1|BE365314 PI1_26_G10.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 544
Score = 496 bits (250), Expect = e-138
Identities = 316/338 (93%)
Strand = Plus / Plus
Query: 5 gaggagatgcctgcttcacctcctgctgcacttgcaaggccacgcgtgcactccttctgc 64
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 203 gaggagatgcctgctgcacctcctgctgcacttgcaaggccacgtgtgcactccttctgc 262
Query: 65 aagacattgacagcctctgataccagcactcatggtggattctcggtgctgcggcgccat 124
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct: 263 aagacattgacagcctctgacaccagcacacatggtggtttctcggtgctgcgtcgccat 322
Query: 125 gcagatgagtgtcttccgccactggatatgacccgtcaacctccaacacaagagcttgta 184
|||||||| || ||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct: 323 gcagatgaatgccttccaccgctggatatgagtcgtcaacctccaacacaagagcttgtg 382
Query: 185 gccaaggacctgcatggtgtggaatggcgctttcgccacatattcagaggtcaaccacga 244
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 383 gccaaggatctgcatggtgtggaatggcgctttcgtcacatattcagaggtcaaccccga 442
Query: 245 aggcatcttttgcagagtggctggagtgtttttgttagtgccaagcgtcttggtgctgga 304
|||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 443 aggcatctttggcagagtggctggagtgtttttgttagtgcaaagcgtcttgttgctggg 502
Query: 305 gatgccttcatctttctaagaggtgatagtggggagct 342
||||||||||||||||| |||||||||| |||||||||
Sbjct: 503 gatgccttcatctttctgagaggtgataatggggagct 540
>gb|BE598866.1|BE598866 PI1_83_D12.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 552
Score = 492 bits (248), Expect = e-137
Identities = 344/376 (91%)
Strand = Plus / Plus
Query: 751 ctgcagtcagccctccccctatcaacccgcttccagtgcacagacccaagagaccgcgct 810
|||||||||||||||||||| |||| || |||||||| ||||| |||||||| || ||||
Sbjct: 9 ctgcagtcagccctccccctgtcaatccacttccagtacacaggcccaagaggcctcgct 68
Query: 811 ctaatgctgtagcttctctgcccgagtcttcagctccaacaaaagaagctgctccaaagg 870
|||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct: 69 ctaatgctgtagcttctctggctgagtcttcagctccaacaaaagaagctgctccgaagg 128
Query: 871 tcacattagagactcaacaacatgccctgcaaaggcccttgcagacccaggataatgtgg 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 129 tcacattagagactcaacaacatgccctgcaaaggcccttgcagacccaggataatgcgg 188
Query: 931 ccccgaaaagtgtttttggtgataacagtgaattggactctgctcataagtcctccctgc 990
|||| ||||||| |||||||||||||||||| |||||| ||||||||||||| ||||||
Sbjct: 189 ccccaaaaagtggttttggtgataacagtgagttggacgctgctcataagtcagccctgc 248
Query: 991 gaccgtcaggttttgatctggacaagagcaccattggcatgcagaggaagctgggttcag 1050
|||| ||||| |||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct: 249 gaccatcagggtttgatctagagaagaacaccattggcatgcagaggaagctgggttcag 308
Query: 1051 atatttggatgcgaatgaacaggcctgatggttacagtgaaatgttatcgggatatcaac 1110
||| |||||||| |||||||| ||||| || |||| |||||||||||| ||||||||||
Sbjct: 309 atagttggatgcatatgaacagacctgaaggatacaatgaaatgttatctggatatcaac 368
Query: 1111 cacctaatgaagatgt 1126
||||||| |||||||
Sbjct: 369 aacctaataaagatgt 384
>gb|BI076072.1|BI076072 IP1_25_C11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 650
Score = 478 bits (241), Expect = e-133
Identities = 298/317 (94%)
Strand = Plus / Plus
Query: 5 gaggagatgcctgcttcacctcctgctgcacttgcaaggccacgcgtgcactccttctgc 64
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 333 gaggagatgcctgctgcacctcctgctgcacttgcaaggccacgtgtgcactccttctgc 392
Query: 65 aagacattgacagcctctgataccagcactcatggtggattctcggtgctgcggcgccat 124
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct: 393 aagacattgacagcctctgacaccagcacacatggtggtttctcggtgctgcgtcgccat 452
Query: 125 gcagatgagtgtcttccgccactggatatgacccgtcaacctccaacacaagagcttgta 184
|||||||| || ||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct: 453 gcagatgaatgccttccaccgctggatatgagtcgtcaacctccaacacaagagcttgtg 512
Query: 185 gccaaggacctgcatggtgtggaatggcgctttcgccacatattcagaggtcaaccacga 244
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 513 gccaaggatctgcatggtgtggaatggcgctttcgtcacatattcagaggtcaaccccga 572
Query: 245 aggcatcttttgcagagtggctggagtgtttttgttagtgccaagcgtcttggtgctgga 304
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 573 aggcatcttttgcagagtggctggagtgtttttgttagtgcaaagcgtcttgttgctggg 632
Query: 305 gatgccttcatctttct 321
|||||||||||||||||
Sbjct: 633 gatgccttcatctttct 649
>gb|BM325307.1|BM325307 PIC1_43_H04.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 507
Score = 436 bits (220), Expect = e-120
Identities = 295/320 (92%)
Strand = Plus / Plus
Query: 807 cgctctaatgctgtagcttctctgcccgagtcttcagctccaacaaaagaagctgctcca 866
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 12 cgctctaatgctgtagcttctctggctgagtcttcagctccaacaaaagaagctgctccg 71
Query: 867 aaggtcacattagagactcaacaacatgccctgcaaaggcccttgcagacccaggataat 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 aaggtcacattagagactcaacaacatgccctgcaaaggcccttgcagacccaggataat 131
Query: 927 gtggccccgaaaagtgtttttggtgataacagtgaattggactctgctcataagtcctcc 986
| |||||| ||||||| |||||||||||||||||| |||||| ||||||||||||| ||
Sbjct: 132 gcggccccaaaaagtggttttggtgataacagtgagttggacgctgctcataagtcagcc 191
Query: 987 ctgcgaccgtcaggttttgatctggacaagagcaccattggcatgcagaggaagctgggt 1046
|||||||| ||||| |||||||| || |||| ||||||||||||||||||||||||||||
Sbjct: 192 ctgcgaccatcagggtttgatctagagaagaacaccattggcatgcagaggaagctgggt 251
Query: 1047 tcagatatttggatgcgaatgaacaggcctgatggttacagtgaaatgttatcgggatat 1106
||||||| |||||||| |||||||| ||||| || |||| |||||||||||| ||||||
Sbjct: 252 tcagatagttggatgcatatgaacagacctgaaggatacaatgaaatgttatctggatat 311
Query: 1107 caaccacctaatgaagatgt 1126
|||| ||||||| |||||||
Sbjct: 312 caacaacctaataaagatgt 331
>gb|BM323872.1|BM323872 PIC1_28_F07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 254
Score = 347 bits (175), Expect = 1e-093
Identities = 226/242 (93%), Gaps = 2/242 (0%)
Strand = Plus / Plus
Query: 344 cgtgtaggagtcaggcgtgccatgaggcagcaagcaaatgttccatcttcagtaatatca 403
||||| ||||||| ||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 13 cgtgtgggagtcaagcgtgccatgaggcaacaagcaaatgttccgtcttcagtaatatca 72
Query: 404 agccacagcatgcatcttggtgttcttgctacagcatggcatgctgttaacactgggacc 463
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 73 agccacaacatgcatcttggtgttcttgctactgcatggcatgctgttaacactgggacc 132
Query: 464 atgtttactgtctactacaagcctaggacaagtctccagctgagtttgttgttccctgtg 523
||| | |||||||||||||| ||||||||||| |||| ||||||||| ||| |||||||
Sbjct: 133 atgatcactgtctactacaaacctaggacaag--tccatctgagtttgatgtcccctgtg 190
Query: 524 atcgctatatggaatcactgaaacgaaattaccctatagggatgagatttaaaatgaggt 583
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 atcgctatacggagtcactgaaacgaaattaccctatagggatgagatttaaaatgaggt 250
Query: 584 tt 585
||
Sbjct: 251 tt 252
>gb|BG947802.1|BG947802 IP1_5_C11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 551
Score = 315 bits (159), Expect = 5e-084
Identities = 201/215 (93%)
Strand = Plus / Plus
Query: 5 gaggagatgcctgcttcacctcctgctgcacttgcaaggccacgcgtgcactccttctgc 64
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 333 gaggagatgcctgctgcacctcctgctgcacttgcaaggccacgtgtgcactccttctgc 392
Query: 65 aagacattgacagcctctgataccagcactcatggtggattctcggtgctgcggcgccat 124
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct: 393 aagacattgacagcctctgacaccagcacacatggtggtttctcggtgctgcgtcgccat 452
Query: 125 gcagatgagtgtcttccgccactggatatgacccgtcaacctccaacacaagagcttgta 184
|||||||| || ||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct: 453 gcagatgaatgccttccaccgctggatatgagtcgtcaacctccaacacaagagcttgtg 512
Query: 185 gccaaggacctgcatggtgtggaatggcgctttcg 219
|||||||| ||||||||||||||||||||||||||
Sbjct: 513 gccaaggatctgcatggtgtggaatggcgctttcg 547
>gb|BM325683.1|BM325683 PIC1_47_E07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 541
Score = 254 bits (128), Expect = 2e-065
Identities = 314/371 (84%), Gaps = 5/371 (1%)
Strand = Plus / Plus
Query: 386 ccatcttcagtaatatcaagccacagcatgcatcttggtgttcttgctacagcatggcat 445
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 21 ccatcttcagtcatatcaagccacagtatgcatcttggtgttcttgcgacagcatggcat 80
Query: 446 gctgttaacactgggaccatgtttactgtctactacaagcctaggacaagtctccagctg 505
|| || |||||||||| ||||| ||||||||||||||||| ||||| |||| ||||||
Sbjct: 81 gcagtcaacactgggagtatgttcactgtctactacaagccaaggactagtc--cagctg 138
Query: 506 agtttgttgttccctgtgatcgcta-tatggaatcactgaaacgaaattaccctataggg 564
| ||||| || | | ||| | || |||| ||||||||||||||||||| | ||||||
Sbjct: 139 aatttgtggtctcgcgagataggtactatg-aatcactgaaacgaaattattcaataggg 197
Query: 565 atgagatttaaaatgaggttt-aaggtgaagaggctccagaacaaaggttcactgggacc 623
||||||||||| ||||| ||| |||||||||| || |||| ||||| |||||||| ||
Sbjct: 198 atgagatttaagatgagatttgaaggtgaagaagcagcagagcaaagattcactggcaca 257
Query: 624 attgttggaaatgtggatcctgatcaagctggatgggctgaatctaaatggcgttacctc 683
|| ||||||| | | | |||||| | |||| |||||||| || |||||||||| |||
Sbjct: 258 atagttggaataggtgcttctgatccatctggttgggctgactcaaaatggcgttccctt 317
Query: 684 aaggtgaggtgggatgaagcttcctccattccacgtcctgaaagggtttctccctggcaa 743
|||||||| |||||||||||||| || |||| ||||||||||| |||||||| ||||||
Sbjct: 318 aaggtgagatgggatgaagcttcttctgttcctcgtcctgaaagagtttctccttggcaa 377
Query: 744 atagaacctgc 754
|||||||||||
Sbjct: 378 atagaacctgc 388
>gb|BM325852.1|BM325852 PIC1_53_F03.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 432
Score = 254 bits (128), Expect = 2e-065
Identities = 314/371 (84%), Gaps = 5/371 (1%)
Strand = Plus / Plus
Query: 386 ccatcttcagtaatatcaagccacagcatgcatcttggtgttcttgctacagcatggcat 445
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 21 ccatcttcagtcatatcaagccacagtatgcatcttggtgttcttgcgacagcatggcat 80
Query: 446 gctgttaacactgggaccatgtttactgtctactacaagcctaggacaagtctccagctg 505
|| || |||||||||| ||||| ||||||||||||||||| ||||| |||| ||||||
Sbjct: 81 gcagtcaacactgggagtatgttcactgtctactacaagccaaggactagtc--cagctg 138
Query: 506 agtttgttgttccctgtgatcgcta-tatggaatcactgaaacgaaattaccctataggg 564
| ||||| || | | ||| | || |||| ||||||||||||||||||| | ||||||
Sbjct: 139 aatttgtggtctcgcgagataggtactatg-aatcactgaaacgaaattattcaataggg 197
Query: 565 atgagatttaaaatgaggttt-aaggtgaagaggctccagaacaaaggttcactgggacc 623
||||||||||| ||||| ||| |||||||||| || |||| ||||| |||||||| ||
Sbjct: 198 atgagatttaagatgagatttgaaggtgaagaagcagcagagcaaagattcactggcaca 257
Query: 624 attgttggaaatgtggatcctgatcaagctggatgggctgaatctaaatggcgttacctc 683
|| ||||||| | | | |||||| | |||| |||||||| || |||||||||| |||
Sbjct: 258 atagttggaataggtgcttctgatccatctggttgggctgactcaaaatggcgttccctt 317
Query: 684 aaggtgaggtgggatgaagcttcctccattccacgtcctgaaagggtttctccctggcaa 743
|||||||| |||||||||||||| || |||| ||||||||||| |||||||| ||||||
Sbjct: 318 aaggtgagatgggatgaagcttcttctgttcctcgtcctgaaagagtttctccttggcaa 377
Query: 744 atagaacctgc 754
|||||||||||
Sbjct: 378 atagaacctgc 388
>gb|BI643705.1|BI643705 IP1_56_A06.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 488
Score = 240 bits (121), Expect = 2e-061
Identities = 337/409 (82%)
Strand = Plus / Plus
Query: 89 agcactcatggtggattctcggtgctgcggcgccatgcagatgagtgtcttccgccactg 148
||||| |||||||| ||||| ||| |||| || |||||||||||||| || || ||| ||
Sbjct: 15 agcacgcatggtggtttctcagtgttgcgccggcatgcagatgagtgcctcccaccattg 74
Query: 149 gatatgacccgtcaacctccaacacaagagcttgtagccaaggacctgcatggtgtggaa 208
||||||| | || || |||| ||||| | || ||||||||||||||||| | ||
Sbjct: 75 gatatgagtcaacaccccccaaatcaagaattggtggccaaggacctgcatgggattgag 134
Query: 209 tggcgctttcgccacatattcagaggtcaaccacgaaggcatcttttgcagagtggctgg 268
||||| || || ||||| || ||||||| ||||| || || || | |||||||| |||
Sbjct: 135 tggcggttccgtcacatctttcgaggtcagccacggagacacctccttcagagtggttgg 194
Query: 269 agtgtttttgttagtgccaagcgtcttggtgctggagatgccttcatctttctaagaggt 328
|||||||||||||| ||||||||||||| ||| || ||||||||||| ||||| ||||||
Sbjct: 195 agtgtttttgttagcgccaagcgtcttgttgcaggggatgccttcatatttctcagaggt 254
Query: 329 gatagtggggagcttcgtgtaggagtcaggcgtgccatgaggcagcaagcaaatgttcca 388
|| | ||||||| | ||||| || || ||||||| ||||||| ||| | | | | |||
Sbjct: 255 gagaatggggagttacgtgttggggttcggcgtgcactgaggcaccaaaccactatccca 314
Query: 389 tcttcagtaatatcaagccacagcatgcatcttggtgttcttgctacagcatggcatgct 448
|||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 315 tcttcagtcatatcaagccacagtatgcatcttggtgttcttgcgacagcatggcatgca 374
Query: 449 gttaacactgggaccatgtttactgtctactacaagcctaggacaagtc 497
|| |||||||||| ||||| ||||||||||||||||| ||||| ||||
Sbjct: 375 gtcaacactgggagtatgttcactgtctactacaagccaaggactagtc 423
>gb|BG412918.1|BG412918 OV2_36_E05.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 500
Score = 234 bits (118), Expect = 1e-059
Identities = 370/449 (82%), Gaps = 5/449 (1%)
Strand = Plus / Plus
Query: 260 agtggctggagtgtttttgttagtgccaagcgtcttggtgctggagatgccttcatcttt 319
||||| |||||||||||||||| ||||||||||||| ||| | ||||||||||| |||
Sbjct: 55 agtggttggagtgtttttgttaacgccaagcgtcttgttgcatgggatgccttcatattt 114
Query: 320 ctaagaggtgatagtggggagcttcgtgtaggagtcaggcgtgccatgaggcagcaagca 379
|| |||||||| | ||||||| | ||||| || || ||||||| ||| ||| ||| |
Sbjct: 115 ctcagaggtgagaatggggagttacgtgttggggttcggcgtgcactgatgcaccaaacc 174
Query: 380 aatgttccatcttcagtaatatcaagccacagcatgcatcttggtgttcttgctacagca 439
| | | ||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||
Sbjct: 175 actatcccatcttcagtcatatcaagccacagtatgcatattggtgttcttgcgacagca 234
Query: 440 tggcatgctgttaacactgggaccatgtttactgtctactacaagcctaggacaagtctc 499
|||||||| || |||||||||| ||||| ||||||||||||||||| ||||| || ||
Sbjct: 235 tggcatgcagtcaacactgggagtatgttcactgtctactacaagccaaggactag--tc 292
Query: 500 cagctgagtttgttgttccctgtgatcgcta-tatggaatcactgaaacgaaattaccct 558
||||||| ||||| || | | ||| | || ||| |||||||||||||||||||| |
Sbjct: 293 cagctgaatttgtggtctcgcgagataggtactat-gaatcactgaaacgaaattattca 351
Query: 559 atagggatgagatttaaaatgaggttt-aaggtgaagaggctccagaacaaaggttcact 617
|||||||||| |||||| ||||| ||| |||||||||| || |||| ||||| ||||||
Sbjct: 352 atagggatgatatttaagatgagatttgaaggtgaagaagcagcagagcaaagattcact 411
Query: 618 gggaccattgttggaaatgtggatcctgatcaagctggatgggctgaatctaaatggcgt 677
|| || || ||||||| | | | |||||| | |||| |||||||| || |||||||||
Sbjct: 412 ggcacaatagttggaataggtgcttctgatccatctggttgggctgactcaaaatggcgt 471
Query: 678 tacctcaaggtgaggtgggatgaagcttc 706
| ||| |||||||| ||||||||||||||
Sbjct: 472 tcccttaaggtgagatgggatgaagcttc 500
>gb|BE599494.1|BE599494 PI1_88_C01.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 485
Score = 230 bits (116), Expect = 2e-058
Identities = 152/164 (92%)
Strand = Plus / Plus
Query: 5 gaggagatgcctgcttcacctcctgctgcacttgcaaggccacgcgtgcactccttctgc 64
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 322 gaggagatgcctgctgcacctcctgctgcacttgcaaggccacgtgtgcactccttctgc 381
Query: 65 aagacattgacagcctctgataccagcactcatggtggattctcggtgctgcggcgccat 124
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct: 382 aagacattgacagcctctgacaccagcacacatggtggtttctcggtgctgcgtcgccat 441
Query: 125 gcagatgagtgtcttccgccactggatatgacccgtcaacctcc 168
|||||||| || ||||| || |||||||||| |||||||||||
Sbjct: 442 gcagatgaatgccttccaccgctggatatgagtcgtcaacctcc 485
>gb|BE596258.1|BE596258 PI1_51_E04.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 391
Score = 224 bits (113), Expect = 1e-056
Identities = 149/161 (92%)
Strand = Plus / Plus
Query: 5 gaggagatgcctgcttcacctcctgctgcacttgcaaggccacgcgtgcactccttctgc 64
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 231 gaggagatgcctgctgcacctcctgctgcacttgcaaggccacgtgtgcactccttctgc 290
Query: 65 aagacattgacagcctctgataccagcactcatggtggattctcggtgctgcggcgccat 124
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct: 291 aagacattgacagcctctgacaccagcacacatggtggtttctcggtgctgcgtcgccat 350
Query: 125 gcagatgagtgtcttccgccactggatatgacccgtcaacc 165
|||||||| || ||||| || |||||||||| ||||||||
Sbjct: 351 gcagatgaatgccttccaccgctggatatgagtcgtcaacc 391
>gb|AW287591.2|AW287591 LG1_244_A08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 299
Score = 165 bits (83), Expect = 1e-038
Identities = 245/294 (83%), Gaps = 5/294 (1%)
Strand = Plus / Plus
Query: 415 gcatcttggtgttcttgctacagcatggcatgctgttaacactgggaccatgtttactgt 474
|||||||||||||||||| |||||||||||||| || |||||||||| ||||| |||||
Sbjct: 9 gcatcttggtgttcttgcgacagcatggcatgcagtcaacactgggagtatgttcactgt 68
Query: 475 ctactacaagcctaggacaagtctccagctgagtttgttgttccctgtgatcgcta-tat 533
|||||||||||| ||||| |||| ||||||| ||||| || | | ||| | || |||
Sbjct: 69 ctactacaagccaaggactagtc--cagctgaatttgtggtctcgcgagataggtactat 126
Query: 534 ggaatcactgaaacgaaattaccctatagggatgagatttaaaatgaggttt-aaggtga 592
| ||||||||||||||||||| | ||||||||||||||||| ||||| ||| |||||||
Sbjct: 127 g-aatcactgaaacgaaattattcaatagggatgagatttaagatgagatttgaaggtga 185
Query: 593 agaggctccagaacaaaggttcactgggaccattgttggaaatgtggatcctgatcaagc 652
||| || |||| ||||| |||||||| || || ||||||| | | | |||||| | |
Sbjct: 186 agaagcagcagagcaaagattcactggcacaatagttggaataggtgcttctgatccatc 245
Query: 653 tggatgggctgaatctaaatggcgttacctcaaggtgaggtgggatgaagcttc 706
||| |||||||| || |||||||||| ||| |||||||| ||||||||||||||
Sbjct: 246 tggttgggctgactcaaaatggcgttcccttaaggtgagatgggatgaagcttc 299
>gb|BG947248.1|BG947248 IP1_3_C08.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 496
Score = 149 bits (75), Expect = 7e-034
Identities = 181/215 (84%), Gaps = 1/215 (0%)
Strand = Plus / Plus
Query: 541 ctgaaacgaaattaccctatagggatgagatttaaaatgaggttt-aaggtgaagaggct 599
|||||||||||||| | ||||||||||||||||| ||||| ||| |||||||||| ||
Sbjct: 9 ctgaaacgaaattattcaatagggatgagatttaagatgagatttgaaggtgaagaagca 68
Query: 600 ccagaacaaaggttcactgggaccattgttggaaatgtggatcctgatcaagctggatgg 659
|||| ||||| |||||||| || || ||||||| | | | |||||| | |||| |||
Sbjct: 69 gcagagcaaagattcactggcacaatagttggaataggtgcttctgatccatctggttgg 128
Query: 660 gctgaatctaaatggcgttacctcaaggtgaggtgggatgaagcttcctccattccacgt 719
||||| || |||||||||| ||| |||||||| |||||||||||||| || |||| |||
Sbjct: 129 gctgactcaaaatggcgttcccttaaggtgagatgggatgaagcttcttctgttcctcgt 188
Query: 720 cctgaaagggtttctccctggcaaatagaacctgc 754
|||||||| |||||||| |||||||||||||||||
Sbjct: 189 cctgaaagagtttctccttggcaaatagaacctgc 223
>gb|CW113777.1|CW113777 104_488_11105634_148_34562_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105634, DNA
sequence
Length = 528
Score = 137 bits (69), Expect = 2e-030
Identities = 93/101 (92%)
Strand = Plus / Plus
Query: 386 ccatcttcagtaatatcaagccacagcatgcatcttggtgttcttgctacagcatggcat 445
||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 294 ccatcttcagtcatatcaagccacagtatgcatcttggtgttcttgcgacagcatggcat 353
Query: 446 gctgttaacactgggaccatgtttactgtctactacaagcc 486
|| || |||||||||| ||||| |||||||||||||||||
Sbjct: 354 gcagtcaacactgggagtatgttcactgtctactacaagcc 394
Score = 81.8 bits (41), Expect = 1e-013
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 257 cagagtggctggagtgtttttgttagtgccaagcgtcttggtgctggagatgccttcatc 316
|||||||| ||||||||||||||||| ||||||||||||| ||| || |||||||||||
Sbjct: 59 cagagtggttggagtgtttttgttagcgccaagcgtcttgttgcaggggatgccttcata 118
Query: 317 tttct 321
|||||
Sbjct: 119 tttct 123
>gb|BF656977.1|BF656977 OV2_19_E01.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 166
Score = 133 bits (67), Expect = 4e-029
Identities = 109/123 (88%)
Strand = Plus / Plus
Query: 1004 tgatctggacaagagcaccattggcatgcagaggaagctgggttcagatatttggatgcg 1063
|||||| || |||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 tgatctagagaagaacaccattggcatgcagaggaagctgggttcagatagttggatgca 60
Query: 1064 aatgaacaggcctgatggttacagtgaaatgttatcgggatatcaaccacctaatgaaga 1123
|||||||| ||||| || |||| |||||||||||| |||||||||| ||||| | ||||
Sbjct: 61 tatgaacagacctgaaggatacaatgaaatgttatctggatatcaacaacctactaaaga 120
Query: 1124 tgt 1126
|||
Sbjct: 121 tgt 123
>gb|BM326395.1|BM326395 PIC1_56_E07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 541
Score = 95.6 bits (48), Expect = 8e-018
Identities = 189/236 (80%)
Strand = Plus / Plus
Query: 257 cagagtggctggagtgtttttgttagtgccaagcgtcttggtgctggagatgccttcatc 316
|||||||| |||||||||||||||||| |||| | |||| ||||||||| ||||||||
Sbjct: 43 cagagtggttggagtgtttttgttagttccaaaaggcttgttgctggagacgccttcatt 102
Query: 317 tttctaagaggtgatagtggggagcttcgtgtaggagtcaggcgtgccatgaggcagcaa 376
|| || ||||| || | ||| || ||||| || || || ||||| || |||||||||
Sbjct: 103 ttcctcagaggagaaaatggtgaacttcgggttggtgttaggcgggctatgaggcagttg 162
Query: 377 gcaaatgttccatcttcagtaatatcaagccacagcatgcatcttggtgttcttgctaca 436
| ||||| || |||||||| ||||| ||||| |||||||| || || || ||||| ||
Sbjct: 163 tctaatgtaccttcttcagtcatatctagccaaagcatgcacctcggagtccttgcgact 222
Query: 437 gcatggcatgctgttaacactgggaccatgtttactgtctactacaagcctaggac 492
|||||||| || | ||||| ||||||| |||||||||||||||||||||||
Sbjct: 223 gcatggcacgccatcaacaccaaatccatgttcactgtctactacaagcctaggac 278
Score = 46.1 bits (23), Expect = 0.007
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 562 gggatgagatttaaaatgaggttt-aaggtgaagaggctccagaacaaaggttcactgg 619
||||||||||| | |||||||||| |||| |||||||| ||||| || ||||| |||||
Sbjct: 346 gggatgagattcagaatgaggtttgaaggggaagaggcaccagagcagaggtttactgg 404
>gb|CW113776.1|CW113776 104_488_11105634_116_34558_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11105634, DNA
sequence
Length = 613
Score = 83.8 bits (42), Expect = 3e-014
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 685 aggtgaggtgggatgaagcttcctccattccacgtcctgaaagggtttctccctggcaaa 744
||||||| |||||||||||||| || |||| ||||||||||| |||||||| |||||||
Sbjct: 222 aggtgagatgggatgaagcttcttctgttcctcgtcctgaaagagtttctccttggcaaa 163
Query: 745 tagaacctgc 754
||||||||||
Sbjct: 162 tagaacctgc 153
Score = 69.9 bits (35), Expect = 5e-010
Identities = 69/79 (87%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 535 gaatcactgaaacgaaattaccctatagggatgagatttaaaatgaggttt-aaggtgaa 593
|||||||||||||||||||| | ||||||||||||||||| ||||| ||| ||||||||
Sbjct: 542 gaatcactgaaacgaaattattcaatagggatgagatttaagatgagatttgaaggtgaa 483
Query: 594 gaggctccagaacaaaggt 612
|| || |||| |||||||
Sbjct: 482 gaagcagcagagcaaaggt 464
>gb|BG948513.1|BG948513 IP1_10_F03.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 605
Score = 79.8 bits (40), Expect = 5e-013
Identities = 85/100 (85%)
Strand = Plus / Plus
Query: 56 tccttctgcaagacattgacagcctctgataccagcactcatggtggattctcggtgctg 115
||||| |||||||||||||| ||||| || || ||||| |||||||| ||||| ||| ||
Sbjct: 425 tccttttgcaagacattgactgcctcagacacaagcacgcatggtggtttctcagtgttg 484
Query: 116 cggcgccatgcagatgagtgtcttccgccactggatatga 155
|| || |||||||||||||| || || ||| |||||||||
Sbjct: 485 cgccggcatgcagatgagtgcctcccaccattggatatga 524
>gb|BI141013.1|BI141013 IP1_42_A10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 475
Score = 77.8 bits (39), Expect = 2e-012
Identities = 140/171 (81%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 56 tccttctgcaagacattgacagcctctgataccagcactcatggtggattctcggtgctg 115
|||||||||||||| | || ||||| || |||||||| || || || ||||| ||||||
Sbjct: 271 tccttctgcaagacgctcaccgcctccgacaccagcacacacggaggcttctctgtgctg 330
Query: 116 cggcgccatgcagatgagtgtcttccgccactggatatgac-ccgtcaacctccaacaca 174
|| ||||| ||||| ||||| || || |||||||||||||| | ||| ||||| |||||
Sbjct: 331 cgccgccacgcagacgagtgcctcccaccactggatatgacgcagtc-gcctcccacaca 389
Query: 175 agagcttgtagccaaggacctgcatggtgtggaatggcgctttcgccacat 225
||||| || || ||||| |||||||| |||| |||||||| ||||||||
Sbjct: 390 ggagctggtggcgaaggatctgcatggcatggagtggcgcttccgccacat 440
>gb|CN151666.1|CN151666 WOUND1_76_G05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_76_G05_A002 5', mRNA sequence
Length = 830
Score = 67.9 bits (34), Expect = 2e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 1065 atgaacaggcctgatggttacagtgaaatgttatcgggatatcaaccacctaatgaagat 1124
|||||||| ||||| || |||| |||||||||||| |||||||||| ||||||| |||||
Sbjct: 9 atgaacagacctgaaggatacaatgaaatgttatctggatatcaacaacctaataaagat 68
Query: 1125 gt 1126
||
Sbjct: 69 gt 70
>gb|CL170980.1|CL170980 104_372_10889083_148_31778_139 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10889083, DNA
sequence
Length = 654
Score = 61.9 bits (31), Expect = 1e-007
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 257 cagagtggctggagtgtttttgttagtgccaagcgtcttggtgctggagatgccttcat 315
|||||||| |||||||||||||||||| |||| | |||| ||||||||| ||||||||
Sbjct: 186 cagagtggttggagtgtttttgttagttccaaaaggcttgttgctggagacgccttcat 244
Score = 54.0 bits (27), Expect = 3e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 380 aatgttccatcttcagtaatatcaagccacagcatgcatcttggtgttcttgctacagca 439
||||| || |||||||| ||||| ||||| |||||||| || || || ||||| || |||
Sbjct: 386 aatgtaccttcttcagtcatatctagccaaagcatgcacctcggagtccttgcgactgca 445
Query: 440 tggcatgctgttaacactgggaccatgtttactgtctactacaagcctagg 490
||||| || | ||||| ||||||| |||||||||||||||||||||
Sbjct: 446 tggcacgccatcaacaccaaatccatgttcactgtctactacaagcctagg 496
>gb|CW221255.1|CW221255 104_656_11197801_116_37452_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11197801, DNA
sequence
Length = 690
Score = 61.9 bits (31), Expect = 1e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 257 cagagtggctggagtgtttttgttagtgccaagcgtcttggtgctggagatgccttcat 315
|||||||| |||||||||||||||||| |||| | |||| ||||||||| ||||||||
Sbjct: 108 cagagtggttggagtgtttttgttagttccaaaaggcttgttgctggagacgccttcat 50
Score = 46.1 bits (23), Expect = 0.007
Identities = 74/91 (81%)
Strand = Plus / Minus
Query: 59 ttctgcaagacattgacagcctctgataccagcactcatggtggattctcggtgctgcgg 118
||||||||||| | || ||||| || |||||||| || || || ||||| ||||||||
Sbjct: 667 ttctgcaagacgctcaccgcctccgacaccagcacacacggaggcttctctgtgctgcgc 608
Query: 119 cgccatgcagatgagtgtcttccgccactgg 149
||||| ||||| ||||| || || |||||||
Sbjct: 607 cgccacgcagacgagtgcctcccaccactgg 577
>gb|CW320967.1|CW320967 104_814_11475293_116_35934_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475293, DNA
sequence
Length = 656
Score = 61.9 bits (31), Expect = 1e-007
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 257 cagagtggctggagtgtttttgttagtgccaagcgtcttggtgctggagatgccttcat 315
|||||||| |||||||||||||||||| |||| | |||| ||||||||| ||||||||
Sbjct: 153 cagagtggttggagtgtttttgttagttccaaaaggcttgttgctggagacgccttcat 95
>gb|CL176668.1|CL176668 104_383_10893279_116_31773_111 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10893279, DNA
sequence
Length = 675
Score = 60.0 bits (30), Expect = 5e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 59 ttctgcaagacattgacagcctctgataccagcactcatggtggattctc 108
|||||||||||| | ||||| |||||||| ||||||||||| ||||||||
Sbjct: 264 ttctgcaagacactcacagcttctgatacaagcactcatgggggattctc 313
>gb|CW052647.1|CW052647 104_292_10515599_114_30188 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515599, DNA
sequence
Length = 666
Score = 60.0 bits (30), Expect = 5e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 59 ttctgcaagacattgacagcctctgataccagcactcatggtggattctc 108
|||||||||||| | ||||| |||||||| ||||||||||| ||||||||
Sbjct: 505 ttctgcaagacactcacagcttctgatacaagcactcatgggggattctc 456
>gb|CW052648.1|CW052648 104_292_10515599_114_30286 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515599, DNA
sequence
Length = 694
Score = 60.0 bits (30), Expect = 5e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 59 ttctgcaagacattgacagcctctgataccagcactcatggtggattctc 108
|||||||||||| | ||||| |||||||| ||||||||||| ||||||||
Sbjct: 505 ttctgcaagacactcacagcttctgatacaagcactcatgggggattctc 456
>gb|CW052649.1|CW052649 104_292_10515599_115_30187 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515599, DNA
sequence
Length = 584
Score = 60.0 bits (30), Expect = 5e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 59 ttctgcaagacattgacagcctctgataccagcactcatggtggattctc 108
|||||||||||| | ||||| |||||||| ||||||||||| ||||||||
Sbjct: 271 ttctgcaagacactcacagcttctgatacaagcactcatgggggattctc 320
>gb|CW052650.1|CW052650 104_292_10515599_115_30287 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515599, DNA
sequence
Length = 597
Score = 60.0 bits (30), Expect = 5e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 59 ttctgcaagacattgacagcctctgataccagcactcatggtggattctc 108
|||||||||||| | ||||| |||||||| ||||||||||| ||||||||
Sbjct: 271 ttctgcaagacactcacagcttctgatacaagcactcatgggggattctc 320
>gb|BI140057.1|BI140057 IP1_49_D09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 477
Score = 60.0 bits (30), Expect = 5e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 59 ttctgcaagacattgacagcctctgataccagcactcatggtggattctc 108
|||||||||||| | ||||| |||||||| ||||||||||| ||||||||
Sbjct: 189 ttctgcaagacactcacagcttctgatacaagcactcatgggggattctc 238
>gb|BI140442.1|BI140442 IP1_49_D09.b2_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 474
Score = 60.0 bits (30), Expect = 5e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 59 ttctgcaagacattgacagcctctgataccagcactcatggtggattctc 108
|||||||||||| | ||||| |||||||| ||||||||||| ||||||||
Sbjct: 189 ttctgcaagacactcacagcttctgatacaagcactcatgggggattctc 238
>gb|BF585996.1|BF585996 FM1_33_B09.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 583
Score = 58.0 bits (29), Expect = 2e-006
Identities = 92/113 (81%)
Strand = Plus / Plus
Query: 380 aatgttccatcttcagtaatatcaagccacagcatgcatcttggtgttcttgctacagca 439
||||| || |||||||| ||||| ||||| |||||||| || || || ||||| || |||
Sbjct: 31 aatgtaccttcttcagtcatatctagccaaagcatgcacctcggagtccttgcgactgca 90
Query: 440 tggcatgctgttaacactgggaccatgtttactgtctactacaagcctaggac 492
||||| || | ||||| ||||||| |||||||||||||||||||||||
Sbjct: 91 tggcacgccatcaacaccaaatccatgttcactgtctactacaagcctaggac 143
Score = 40.1 bits (20), Expect = 0.43
Identities = 54/64 (84%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 557 ctatagggatgagatttaaaatgaggttt-aaggtgaagaggctccagaacaaaggttca 615
|||| ||||||||||| | ||||||||| |||| |||||||| ||||| || ||||| |
Sbjct: 206 ctattgggatgagattcaggatgaggtttgaaggggaagaggcaccagagcagaggttta 265
Query: 616 ctgg 619
||||
Sbjct: 266 ctgg 269
>gb|BF587183.1|BF587183 FM1_33_B09.b2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 555
Score = 58.0 bits (29), Expect = 2e-006
Identities = 92/113 (81%)
Strand = Plus / Plus
Query: 380 aatgttccatcttcagtaatatcaagccacagcatgcatcttggtgttcttgctacagca 439
||||| || |||||||| ||||| ||||| |||||||| || || || ||||| || |||
Sbjct: 31 aatgtaccttcttcagtcatatctagccaaagcatgcacctcggagtccttgcgactgca 90
Query: 440 tggcatgctgttaacactgggaccatgtttactgtctactacaagcctaggac 492
||||| || | ||||| ||||||| |||||||||||||||||||||||
Sbjct: 91 tggcacgccatcaacaccaaatccatgttcactgtctactacaagcctaggac 143
Score = 40.1 bits (20), Expect = 0.43
Identities = 54/64 (84%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 557 ctatagggatgagatttaaaatgaggttt-aaggtgaagaggctccagaacaaaggttca 615
|||| ||||||||||| | ||||||||| |||| |||||||| ||||| || ||||| |
Sbjct: 206 ctattgggatgagattcaggatgaggtttgaaggggaagaggcaccagagcagaggttta 265
Query: 616 ctgg 619
||||
Sbjct: 266 ctgg 269
>gb|CW447952.1|CW447952 fsbb001f181f02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f181f02, DNA
sequence
Length = 655
Score = 54.0 bits (27), Expect = 3e-005
Identities = 90/111 (81%)
Strand = Plus / Minus
Query: 380 aatgttccatcttcagtaatatcaagccacagcatgcatcttggtgttcttgctacagca 439
||||| || |||||||| ||||| ||||| |||||||| || || || ||||| || |||
Sbjct: 576 aatgtaccttcttcagtcatatctagccaaagcatgcacctcggagtccttgcgactgca 517
Query: 440 tggcatgctgttaacactgggaccatgtttactgtctactacaagcctagg 490
||||| || | ||||| ||||||| |||||||||||||||||||||
Sbjct: 516 tggcacgccatcaacaccaaatccatgttcactgtctactacaagcctagg 466
Score = 40.1 bits (20), Expect = 0.43
Identities = 39/44 (88%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 562 gggatgagatttaaaatgaggttt-aaggtgaagaggctccaga 604
||||||||||| | |||||||||| |||| |||||||| |||||
Sbjct: 248 gggatgagattcagaatgaggtttgaaggggaagaggcaccaga 205
>gb|CD223413.1|CD223413 CCC1_27_B07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_27_B07_A007 5', mRNA sequence
Length = 658
Score = 54.0 bits (27), Expect = 3e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 462 ccatgtttactgtctactacaagcctaggac 492
||||||| |||||||||||||||||||||||
Sbjct: 66 ccatgttcactgtctactacaagcctaggac 96
Score = 46.1 bits (23), Expect = 0.007
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 562 gggatgagatttaaaatgaggttt-aaggtgaagaggctccagaacaaaggttcactgg 619
||||||||||| | |||||||||| |||| |||||||| ||||| || ||||| |||||
Sbjct: 164 gggatgagattcagaatgaggtttgaaggggaagaggcaccagagcagaggtttactgg 222
>gb|CW163532.1|CW163532 104_571_11151512_148_36455_028 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151512, DNA
sequence
Length = 722
Score = 52.0 bits (26), Expect = 1e-004
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 56 tccttctgcaagacattgacagcctctgataccagcactcatggtggattctcggtgctg 115
|||||||||||||| | || ||||| || |||||||| || || || ||||| ||||||
Sbjct: 510 tccttctgcaagacgctcaccgcctccgacaccagcacacacggaggcttctctgtgctg 451
Query: 116 cggcgccatgcagatgagtgtcttccgccactgg 149
|| ||||| ||||| ||||| || || |||||||
Sbjct: 450 cgccgccacgcagacgagtgcctcccaccactgg 417
>gb|CW320968.1|CW320968 104_814_11475293_148_35938_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475293, DNA
sequence
Length = 610
Score = 52.0 bits (26), Expect = 1e-004
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 56 tccttctgcaagacattgacagcctctgataccagcactcatggtggattctcggtgctg 115
|||||||||||||| | || ||||| || |||||||| || || || ||||| ||||||
Sbjct: 264 tccttctgcaagacgctcaccgcctccgacaccagcacacacggaggcttctctgtgctg 323
Query: 116 cggcgccatgcagatgagtgtcttccgccactgg 149
|| ||||| ||||| ||||| || || |||||||
Sbjct: 324 cgccgccacgcagacgagtgcctcccaccactgg 357
>gb|CW447951.1|CW447951 fsbb001f181f02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f181f02, DNA
sequence
Length = 443
Score = 52.0 bits (26), Expect = 1e-004
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 56 tccttctgcaagacattgacagcctctgataccagcactcatggtggattctcggtgctg 115
|||||||||||||| | || ||||| || |||||||| || || || ||||| ||||||
Sbjct: 90 tccttctgcaagacgctcaccgcctccgacaccagcacacacggaggcttctctgtgctg 149
Query: 116 cggcgccatgcagatgagtgtcttccgccactgg 149
|| ||||| ||||| ||||| || || |||||||
Sbjct: 150 cgccgccacgcagacgagtgcctcccaccactgg 183
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 267,476
Number of Sequences: 832831
Number of extensions: 267476
Number of successful extensions: 71075
Number of sequences better than 0.5: 60
Number of HSP's better than 0.5 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70959
Number of HSP's gapped (non-prelim): 95
length of query: 1126
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1106
effective length of database: 474,703,049
effective search space: 525021572194
effective search space used: 525021572194
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)