BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750698.2.1
(1126 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX609501.1|CX609501 ANR1_13_C09.b1_A002 Anaerobic roots ... 771 0.0
gb|BG356425.1|BG356425 EM1_22_D06.g1_A002 Embryo 1 (EM1) So... 642 0.0
gb|BG556665.1|BG556665 EM1_40_A10.g1_A002 Embryo 1 (EM1) So... 630 e-179
gb|BG356579.1|BG356579 EM1_24_B11.g1_A002 Embryo 1 (EM1) So... 622 e-176
gb|BG356585.1|BG356585 EM1_24_C11.g1_A002 Embryo 1 (EM1) So... 622 e-176
gb|CX619034.1|CX619034 GABR1_43_D06.b1_A002 GA- or brassino... 613 e-173
gb|BE597212.1|BE597212 PI1_69_E08.g1_A002 Pathogen induced ... 539 e-151
gb|BF421132.1|BF421132 FM1_6_G10.g1_A003 Floral-Induced Mer... 502 e-140
gb|BG465274.1|BG465274 EM1_74_B11.g1_A002 Embryo 1 (EM1) So... 474 e-132
gb|CD223791.1|CD223791 CCC1_30_H11.b1_A007 Callus culture/c... 474 e-132
gb|CD206231.1|CD206231 HS1_21_D08.b1_A012 Heat-shocked seed... 462 e-128
gb|BG049546.1|BG049546 EM1_5_E08.g1_A002 Embryo 1 (EM1) Sor... 460 e-127
gb|CW377606.1|CW377606 fsbb001f055p23f0 Sorghum methylation... 335 5e-090
gb|CW377608.1|CW377608 fsbb001f055p24f0 Sorghum methylation... 309 3e-082
gb|CF427542.1|CF427542 PH1_16_H10.b1_A002 Phosphorous-defic... 293 2e-077
gb|CW259843.1|CW259843 104_726_11228648_148_35187_026 Sorgh... 283 2e-074
gb|CW389023.1|CW389023 fsbb001f074a16f0 Sorghum methylation... 283 2e-074
gb|CW377607.1|CW377607 fsbb001f055p23k0 Sorghum methylation... 276 4e-072
gb|CW447661.1|CW447661 fsbb001f180o06k0 Sorghum methylation... 230 2e-058
gb|CW498331.1|CW498331 fsbb001f291i07k0 Sorghum methylation... 230 2e-058
gb|CW298748.1|CW298748 104_781_11462740_116_35659_008 Sorgh... 139 6e-031
gb|CW498330.1|CW498330 fsbb001f291i07f0 Sorghum methylation... 80 5e-013
gb|CW089571.1|CW089571 104_435_10948786_114_32597_047 Sorgh... 70 5e-010
gb|CW026765.1|CW026765 104_253_10498134_114_30533 Sorghum m... 44 0.028
gb|CW112229.1|CW112229 104_486_11104774_116_34546_095 Sorgh... 40 0.43
gb|CW121127.1|CW121127 104_498_11109722_148_34656_001 Sorgh... 40 0.43
gb|CW136461.1|CW136461 104_521_11118394_148_34841_039 Sorgh... 40 0.43
gb|BG356438.1|BG356438 EM1_22_E08.g1_A002 Embryo 1 (EM1) So... 40 0.43
gb|BG410721.1|BG410721 EM1_25_B04.g1_A002 Embryo 1 (EM1) So... 40 0.43
gb|CD236008.1|CD236008 SS1_25_G01.b1_A012 Salt-stressed see... 40 0.43
gb|CF071882.1|CF071882 FE1_19_B06.b1_A002 Iron-deficient se... 40 0.43
>gb|CX609501.1|CX609501 ANR1_13_C09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_13_C09_A002 3', mRNA sequence
Length = 845
Score = 771 bits (389), Expect = 0.0
Identities = 464/489 (94%)
Strand = Plus / Plus
Query: 362 caatcatgaaattcagttctgatgaagaggctatcaaacttgcaaacgactcaaaatatg 421
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 caatcatgaaattcaattctgatgaagaggctatcaaacttgcaaacgactcaaagtatg 60
Query: 422 gtcttggctgtgctgttttttcgggcaaccagaagcgtgccatcagaatagcgtcccagt 481
||||||| |||||||||||||| ||| ||||||||||||| ||||||||||| |||||
Sbjct: 61 gtcttggttgtgctgttttttctggcgaccagaagcgtgctatcagaatagcatcccaaa 120
Query: 482 tacactgtggggtagcagcaatcaatgattttgcttcaagttacatgtgccagtctttgc 541
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 121 tacactgtggggtagcagcaatcaatgattttgcttcaagttacatgtgtcagtctttgc 180
Query: 542 cattcggtggtgttaaagacagcggattcgggagatttgctggcgtagaaggcttgcgag 601
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct: 181 cattcggtggtgttaaagacagtggatttgggagatttgctggtgtagaaggcttgcgag 240
Query: 602 cttgctgccttgtgaagtctgttgtagaagatagattgtggccatatattagaacagtga 661
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 241 cttgctgccttgtgaagtctgttgtagaagatagattatggccatatattaaaacagtga 300
Query: 662 tcccgaagcctatccagtatcccgtctcagagcatggatttgagttccagcagttgcttg 721
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcccgaaacctatccagtatcctgtctcagagcatggatttgagttccagcagttgcttg 360
Query: 722 tggagactctgtatggctatagcgtgtgggacaggttgcggtcccttgtgaatcttataa 781
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggagactctgtatggctatagcatgtgggacaggttgcggtcccttgtgaatcttataa 420
Query: 782 agatggttaccgagcagaattctgccccggcttcaaatgcgaccacgaagaaaaggcgat 841
|||||| |||||||||||| |||||| | | |||||||||||| ||||||||||||||||
Sbjct: 421 agatggctaccgagcagaactctgcctcagtttcaaatgcgacgacgaagaaaaggcgat 480
Query: 842 gagacgaat 850
||| |||||
Sbjct: 481 gaggcgaat 489
Score = 69.9 bits (35), Expect = 5e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 941 gtttgctctctgaaacaatctcgagcctgggagcttgtg 979
||||||||||||||||||||| |||||||||||||||||
Sbjct: 739 gtttgctctctgaaacaatcttgagcctgggagcttgtg 777
>gb|BG356425.1|BG356425 EM1_22_D06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 674
Score = 642 bits (324), Expect = 0.0
Identities = 381/400 (95%)
Strand = Plus / Plus
Query: 451 cagaagcgtgccatcagaatagcgtcccagttacactgtggggtagcagcaatcaatgat 510
||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 1 cagaagcgtgctatcagaatagcatcccaaatacactgtggggtagcagcaatcaatgat 60
Query: 511 tttgcttcaagttacatgtgccagtctttgccattcggtggtgttaaagacagcggattc 570
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 61 tttgcttcaagttacatgtgtcagtctttgccattcggtggtgttaaagacagtggattt 120
Query: 571 gggagatttgctggcgtagaaggcttgcgagcttgctgccttgtgaagtctgttgtagaa 630
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gggagatttgctggtgtagaaggcttgcgagcttgctgccttgtgaagtctgttgtagaa 180
Query: 631 gatagattgtggccatatattagaacagtgatcccgaagcctatccagtatcccgtctca 690
|||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||
Sbjct: 181 gatagattatggccatatattaaaacagtgatcccgaaacctatccagtatcctgtctca 240
Query: 691 gagcatggatttgagttccagcagttgcttgtggagactctgtatggctatagcgtgtgg 750
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 241 gagcatggatttgagttccagcagttgcttgtggagactctgtatggctatagcatgtgg 300
Query: 751 gacaggttgcggtcccttgtgaatcttataaagatggttaccgagcagaattctgccccg 810
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 301 gacaggttgcggtcccttgtgaatcttataaagatggttaccgagcagaactctgcctca 360
Query: 811 gcttcaaatgcgaccacgaagaaaaggcgatgagacgaat 850
| |||||||||||| ||||||||||||||||||| |||||
Sbjct: 361 gtttcaaatgcgacgacgaagaaaaggcgatgaggcgaat 400
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 941 gtttgctctctgaaacaatct 961
|||||||||||||||||||||
Sbjct: 650 gtttgctctctgaaacaatct 670
>gb|BG556665.1|BG556665 EM1_40_A10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 393
Score = 630 bits (318), Expect = e-179
Identities = 374/393 (95%)
Strand = Plus / Plus
Query: 452 agaagcgtgccatcagaatagcgtcccagttacactgtggggtagcagcaatcaatgatt 511
|||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 1 agaagcgtgctatcagaatagcatcccaaatacactgtggggtagcagcaatcaatgatt 60
Query: 512 ttgcttcaagttacatgtgccagtctttgccattcggtggtgttaaagacagcggattcg 571
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct: 61 ntgcttcaagttacatgtgtcagtctttgccattcggtggtgttaaagacagtggatttg 120
Query: 572 ggagatttgctggcgtagaaggcttgcgagcttgctgccttgtgaagtctgttgtagaag 631
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggagatttgctggtgtagaaggcttgcgagcttgctgccttgtgaagtctgttgtagaag 180
Query: 632 atagattgtggccatatattagaacagtgatcccgaagcctatccagtatcccgtctcag 691
||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||||
Sbjct: 181 atagattatggccatatattaaaacagtgatcccgaaacctatccagtatcctgtctcag 240
Query: 692 agcatggatttgagttccagcagttgcttgtggagactctgtatggctatagcgtgtggg 751
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 241 agcatggatttgagttccagcagttgcttgtggagactctgtatggctatagcatgtggg 300
Query: 752 acaggttgcggtcccttgtgaatcttataaagatggttaccgagcagaattctgccccgg 811
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct: 301 acaggttgcggtcccttgtgaatcttataaagatggttaccgagcagaactctgcctcag 360
Query: 812 cttcaaatgcgaccacgaagaaaaggcgatgag 844
|||||||||||| |||||||||||||||||||
Sbjct: 361 tttcaaatgcgacgacgaagaaaaggcgatgag 393
>gb|BG356579.1|BG356579 EM1_24_B11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 645
Score = 622 bits (314), Expect = e-176
Identities = 368/386 (95%)
Strand = Plus / Plus
Query: 465 cagaatagcgtcccagttacactgtggggtagcagcaatcaatgattttgcttcaagtta 524
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagaatagcatcccaaatacactgtggggtagcagcaatcaatgattttgcttcaagtta 60
Query: 525 catgtgccagtctttgccattcggtggtgttaaagacagcggattcgggagatttgctgg 584
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 61 catgtgtcagtctttgccattcggtggtgttaaagacagtggatttgggagatttgctgg 120
Query: 585 cgtagaaggcttgcgagcttgctgccttgtgaagtctgttgtagaagatagattgtggcc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 121 tgtagaaggcttgcgagcttgctgccttgtgaagtctgttgtagaagatagattatggcc 180
Query: 645 atatattagaacagtgatcccgaagcctatccagtatcccgtctcagagcatggatttga 704
|||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 181 atatattaaaacagtgatcccgaaacctatccagtatcctgtctcagagcatggatttga 240
Query: 705 gttccagcagttgcttgtggagactctgtatggctatagcgtgtgggacaggttgcggtc 764
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 241 gttccagcagttgcttgtggagactctgtatggctatagcatgtgggacaggttgcggtc 300
Query: 765 ccttgtgaatcttataaagatggttaccgagcagaattctgccccggcttcaaatgcgac 824
|||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||||
Sbjct: 301 ccttgtgaatcttataaagatggttaccgagcagaactctgcctcagtttcaaatgcgac 360
Query: 825 cacgaagaaaaggcgatgagacgaat 850
||||||||||||||||||| |||||
Sbjct: 361 gacgaagaaaaggcgatgaggcgaat 386
>gb|BG356585.1|BG356585 EM1_24_C11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 630
Score = 622 bits (314), Expect = e-176
Identities = 368/386 (95%)
Strand = Plus / Plus
Query: 465 cagaatagcgtcccagttacactgtggggtagcagcaatcaatgattttgcttcaagtta 524
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagaatagcatcccaaatacactgtggggtagcagcaatcaatgattttgcttcaagtta 60
Query: 525 catgtgccagtctttgccattcggtggtgttaaagacagcggattcgggagatttgctgg 584
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 61 catgtgtcagtctttgccattcggtggtgttaaagacagtggatttgggagatttgctgg 120
Query: 585 cgtagaaggcttgcgagcttgctgccttgtgaagtctgttgtagaagatagattgtggcc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 121 tgtagaaggcttgcgagcttgctgccttgtgaagtctgttgtagaagatagattatggcc 180
Query: 645 atatattagaacagtgatcccgaagcctatccagtatcccgtctcagagcatggatttga 704
|||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 181 atatattaaaacagtgatcccgaaacctatccagtatcctgtctcagagcatggatttga 240
Query: 705 gttccagcagttgcttgtggagactctgtatggctatagcgtgtgggacaggttgcggtc 764
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 241 gttccagcagttgcttgtggagactctgtatggctatagcatgtgggacaggttgcggtc 300
Query: 765 ccttgtgaatcttataaagatggttaccgagcagaattctgccccggcttcaaatgcgac 824
|||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||||
Sbjct: 301 ccttgtgaatcttataaagatggttaccgagcagaactctgcctcagtttcaaatgcgac 360
Query: 825 cacgaagaaaaggcgatgagacgaat 850
||||||||||||||||||| |||||
Sbjct: 361 gacgaagaaaaggcgatgaggcgaat 386
>gb|CX619034.1|CX619034 GABR1_43_D06.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_43_D06_A002 3', mRNA sequence
Length = 606
Score = 613 bits (309), Expect = e-173
Identities = 354/369 (95%)
Strand = Plus / Plus
Query: 482 tacactgtggggtagcagcaatcaatgattttgcttcaagttacatgtgccagtctttgc 541
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 13 tacactgtggggtagcagcaatcaatgattttgcttcaagttacatgtgtcagtctttgc 72
Query: 542 cattcggtggtgttaaagacagcggattcgggagatttgctggcgtagaaggcttgcgag 601
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct: 73 cattcggtggtgttaaagacagtggatttgggagatttgctggtgtagaaggcttgcgag 132
Query: 602 cttgctgccttgtgaagtctgttgtagaagatagattgtggccatatattagaacagtga 661
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 133 cttgctgccttgtgaagtctgttgtagaagatagattatggccatatattaaaacagtga 192
Query: 662 tcccgaagcctatccagtatcccgtctcagagcatggatttgagttccagcagttgcttg 721
||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 193 tcccgaaacctatctagtatcctgtctcagagcatggatttgagttccagcagttgcttg 252
Query: 722 tggagactctgtatggctatagcgtgtgggacaggttgcggtcccttgtgaatcttataa 781
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 253 tggagactctgtatggctatagcatgtgggacaggttgcggtcccttgtgaatcttataa 312
Query: 782 agatggttaccgagcagaattctgccccggcttcaaatgcgaccacgaagaaaaggcgat 841
||||||||||||||||||| |||||| | | |||||||||||| ||||||||||||||||
Sbjct: 313 agatggttaccgagcagaactctgcctcagtttcaaatgcgacgacgaagaaaaggcgat 372
Query: 842 gagacgaat 850
|||||||||
Sbjct: 373 gagacgaat 381
>gb|BE597212.1|BE597212 PI1_69_E08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 574
Score = 539 bits (272), Expect = e-151
Identities = 317/332 (95%)
Strand = Plus / Plus
Query: 519 aagttacatgtgccagtctttgccattcggtggtgttaaagacagcggattcgggagatt 578
|||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1 aagttacatgtgtcagtctttgccattcggtggtgttaaagacagtggatttgggagatt 60
Query: 579 tgctggcgtagaaggcttgcgagcttgctgccttgtgaagtctgttgtagaagatagatt 638
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgctggtgtagaaggcttgcgagcttgctgccttgtgaagtctgttgtagaagatagatt 120
Query: 639 gtggccatatattagaacagtgatcccgaagcctatccagtatcccgtctcagagcatgg 698
||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 121 atggccatatattaaaacagtgatcccgaaacctatccagtatcctgtctcagagcatgg 180
Query: 699 atttgagttccagcagttgcttgtggagactctgtatggctatagcgtgtgggacaggtt 758
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 181 atttgagttccagcagttgcttgtggagactctgtatggctatagcatgtgggacaggtt 240
Query: 759 gcggtcccttgtgaatcttataaagatggttaccgagcagaattctgccccggcttcaaa 818
|||||||||||||||||||||||||||||||||||||||||| |||||| | | ||||||
Sbjct: 241 gcggtcccttgtgaatcttataaagatggttaccgagcagaactctgcctcagtttcaaa 300
Query: 819 tgcgaccacgaagaaaaggcgatgagacgaat 850
|||||| ||||||||||||||||||| |||||
Sbjct: 301 tgcgacgacgaagaaaaggcgatgaggcgaat 332
>gb|BF421132.1|BF421132 FM1_6_G10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 606
Score = 502 bits (253), Expect = e-140
Identities = 292/305 (95%)
Strand = Plus / Plus
Query: 546 cggtggtgttaaagacagcggattcgggagatttgctggcgtagaaggcttgcgagcttg 605
|||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 1 cggtggtgttaaagacagtggatttgggagatttgctggtgtagaaggcttgcgagcttg 60
Query: 606 ctgccttgtgaagtctgttgtagaagatagattgtggccatatattagaacagtgatccc 665
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 61 ctgccttgtgaagtctgttgtagaagatagattatggccatatattaaaacagtgatccc 120
Query: 666 gaagcctatccagtatcccgtctcagagcatggatttgagttccagcagttgcttgtgga 725
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaacctatccagtatcctgtctcagagcatggatttgagttccagcagttgcttgtgga 180
Query: 726 gactctgtatggctatagcgtgtgggacaggttgcggtcccttgtgaatcttataaagat 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gactctgtatggctatagcgtgtgggacaggttgcggtcccttgtgaatcttataaagat 240
Query: 786 ggttaccgagcagaattctgccccggcttcaaatgcgaccacgaagaaaaggcgatgaga 845
||||||||||||||| |||||| | | |||||||||||| |||||||||||||||||||
Sbjct: 241 ggttaccgagcagaactctgcctcagtttcaaatgcgacgacgaagaaaaggcgatgagg 300
Query: 846 cgaat 850
|||||
Sbjct: 301 cgaat 305
Score = 79.8 bits (40), Expect = 5e-013
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 941 gtttgctctctgaaacaatctcgagcctgggagcttgtgtattcaagcgctt 992
||||||||||||||||||||| ||||||||||||||||||| ||||| ||||
Sbjct: 548 gtttgctctctgaaacaatcttgagcctgggagcttgtgtactcaagggctt 599
>gb|BG465274.1|BG465274 EM1_74_B11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 635
Score = 474 bits (239), Expect = e-132
Identities = 281/295 (95%)
Strand = Plus / Plus
Query: 556 aaagacagcggattcgggagatttgctggcgtagaaggcttgcgagcttgctgccttgtg 615
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 aaagacagtggatttgggagatttgctggtgtagaaggcttgcgagcttgctgccttgtg 60
Query: 616 aagtctgttgtagaagatagattgtggccatatattagaacagtgatcccgaagcctatc 675
||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||
Sbjct: 61 aagtctgttgtagaagatagattatggccatatattaaaacagtgatcccgaaacctatc 120
Query: 676 cagtatcccgtctcagagcatggatttgagttccagcagttgcttgtggagactctgtat 735
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagtatcctgtctcagagcatggatttgagttccagcagttgcttgtggagactctgtat 180
Query: 736 ggctatagcgtgtgggacaggttgcggtcccttgtgaatcttataaagatggttaccgag 795
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggctatagcatgtgggacaggttgcggtcccttgtgaatcttataaagatggttaccgag 240
Query: 796 cagaattctgccccggcttcaaatgcgaccacgaagaaaaggcgatgagacgaat 850
||||| |||||| | | |||||||||||| ||||||||||||||||||| |||||
Sbjct: 241 cagaactctgcctcagtttcaaatgcgacgacgaagaaaaggcgatgaggcgaat 295
Score = 69.9 bits (35), Expect = 5e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 941 gtttgctctctgaaacaatctcgagcctgggagcttgtg 979
||||||||||||||||||||| |||||||||||||||||
Sbjct: 545 gtttgctctctgaaacaatcttgagcctgggagcttgtg 583
>gb|CD223791.1|CD223791 CCC1_30_H11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_30_H11_A007 3', mRNA sequence
Length = 667
Score = 474 bits (239), Expect = e-132
Identities = 281/295 (95%)
Strand = Plus / Plus
Query: 556 aaagacagcggattcgggagatttgctggcgtagaaggcttgcgagcttgctgccttgtg 615
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 aaagacagtggatttgggagatttgctggtgtagaaggcttgcgagcttgctgccttgtg 60
Query: 616 aagtctgttgtagaagatagattgtggccatatattagaacagtgatcccgaagcctatc 675
||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||
Sbjct: 61 aagtctgttgtagaagatagattatggccatatattaaaacagtgatcccgaaacctatc 120
Query: 676 cagtatcccgtctcagagcatggatttgagttccagcagttgcttgtggagactctgtat 735
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagtatcctgtctcagagcatggatttgagttccagcagttgcttgtggagactctgtat 180
Query: 736 ggctatagcgtgtgggacaggttgcggtcccttgtgaatcttataaagatggttaccgag 795
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggctatagcatgtgggacaggttgcggtcccttgtgaatcttataaagatggttaccgag 240
Query: 796 cagaattctgccccggcttcaaatgcgaccacgaagaaaaggcgatgagacgaat 850
||||| |||||| | | |||||||||||| ||||||||||||||||||| |||||
Sbjct: 241 cagaactctgcctcagtttcaaatgcgacgacgaagaaaaggcgatgaggcgaat 295
Score = 69.9 bits (35), Expect = 5e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 941 gtttgctctctgaaacaatctcgagcctgggagcttgtg 979
||||||||||||||||||||| |||||||||||||||||
Sbjct: 545 gtttgctctctgaaacaatcttgagcctgggagcttgtg 583
>gb|CD206231.1|CD206231 HS1_21_D08.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_21_D08_A012 3', mRNA sequence
Length = 652
Score = 462 bits (233), Expect = e-128
Identities = 263/273 (96%)
Strand = Plus / Plus
Query: 572 ggagatttgctggcgtagaaggcttgcgagcttgctgccttgtgaagtctgttgtagaag 631
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagatttgctggtgtagaaggcttgcgagcttgctgccttgtgaagtctgttgtagaag 60
Query: 632 atagattgtggccatatattagaacagtgatcccgaagcctatccagtatcccgtctcag 691
||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||||
Sbjct: 61 atagattatggccatatattaaaacagtgatcccgaaacctatccagtatcctgtctcag 120
Query: 692 agcatggatttgagttccagcagttgcttgtggagactctgtatggctatagcgtgtggg 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agcatggatttgagttccagcagttgcttgtggagactctgtatggctatagcgtgtggg 180
Query: 752 acaggttgcggtcccttgtgaatcttataaagatggttaccgagcagaattctgccccgg 811
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct: 181 acaggttgcggtcccttgtgaatcttataaagatggttaccgagcagaactctgcctcag 240
Query: 812 cttcaaatgcgaccacgaagaaaaggcgatgag 844
|||||||||||| |||||||||||||||||||
Sbjct: 241 tttcaaatgcgacgacgaagaaaaggcgatgag 273
Score = 81.8 bits (41), Expect = 1e-013
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 941 gtttgctctctgaaacaatctcgagcctgggagcttgtgtattcaagcgcttt 993
||||||||||||||||||||| ||||||||||||||||||| ||||| |||||
Sbjct: 522 gtttgctctctgaaacaatcttgagcctgggagcttgtgtactcaagggcttt 574
>gb|BG049546.1|BG049546 EM1_5_E08.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 622
Score = 460 bits (232), Expect = e-127
Identities = 268/280 (95%)
Strand = Plus / Plus
Query: 571 gggagatttgctggcgtagaaggcttgcgagcttgctgccttgtgaagtctgttgtagaa 630
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggagatttgctggtgtagaaggcttgcgagcttgctgccttgtgaagtctgttgtagaa 60
Query: 631 gatagattgtggccatatattagaacagtgatcccgaagcctatccagtatcccgtctca 690
|||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||
Sbjct: 61 gatagattatggccatatattaaaacagtgatcccgaaacctatccagtatcctgtctca 120
Query: 691 gagcatggatttgagttccagcagttgcttgtggagactctgtatggctatagcgtgtgg 750
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 121 gagcatggatttgagttccagcagttgcttgtggagactctgtatggctatagcatgtgg 180
Query: 751 gacaggttgcggtcccttgtgaatcttataaagatggttaccgagcagaattctgccccg 810
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 181 gacaggttgcggtcccttgtgaatcttataaagatggttaccgagcagaactctgcctca 240
Query: 811 gcttcaaatgcgaccacgaagaaaaggcgatgagacgaat 850
| |||||||||||| ||||||||||||||||||| |||||
Sbjct: 241 gtttcaaatgcgacgacgaagaaaaggcgatgaggcgaat 280
Score = 69.9 bits (35), Expect = 5e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 941 gtttgctctctgaaacaatctcgagcctgggagcttgtg 979
||||||||||||||||||||| |||||||||||||||||
Sbjct: 530 gtttgctctctgaaacaatcttgagcctgggagcttgtg 568
>gb|CW377606.1|CW377606 fsbb001f055p23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f055p23, DNA
sequence
Length = 694
Score = 335 bits (169), Expect = 5e-090
Identities = 202/213 (94%)
Strand = Plus / Plus
Query: 130 cccccattatcaggcagatatgacatgggtgcaatctgtatgattgagcactctgagaaa 189
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 55 cccccattatcaggcagatatgacatgggtgcaatctgtatgatggagcactctgagaaa 114
Query: 190 cttcagaatcttgttaatgatgctctagacaaaggtgccgaaattgccgtcagggggagt 249
||||||| |||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 115 cttcagagtcttgttaatgatgctctagacaaaggtgctgaaattgctgtcagagggagc 174
Query: 250 tttggcaatcttggggaagatgcagttgatcaatttttcccaccaactggcctggtgaat 309
||||| |||||||| ||||||||||| |||||||||||||| ||||||| ||||||||||
Sbjct: 175 tttgggaatcttggtgaagatgcagtcgatcaatttttccctccaactgtcctggtgaat 234
Query: 310 gttgatcacacaatgaaaattatgcaagaagag 342
|||||||||||||||||||||||||||||||||
Sbjct: 235 gttgatcacacaatgaaaattatgcaagaagag 267
Score = 276 bits (139), Expect = 4e-072
Identities = 175/187 (93%)
Strand = Plus / Plus
Query: 344 catttggacctattataccaatcatgaaattcagttctgatgaagaggctatcaaacttg 403
||||||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 351 catttggcccaattctaccaatcatgaaattcaattctgatgaagaggctatcaaacttg 410
Query: 404 caaacgactcaaaatatggtcttggctgtgctgttttttcgggcaaccagaagcgtgcca 463
||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||| |
Sbjct: 411 caaacgactcaaagtatggtcttggttgtgctgttttttctggcgaccagaagcgtgcta 470
Query: 464 tcagaatagcgtcccagttacactgtggggtagcagcaatcaatgattttgcttcaagtt 523
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tcagaatagcatcccaaatacactgtggggtagcagcaatcaatgattttgcttcaagtt 530
Query: 524 acatgtg 530
|||||||
Sbjct: 531 acatgtg 537
>gb|CW377608.1|CW377608 fsbb001f055p24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f055p24, DNA
sequence
Length = 462
Score = 309 bits (156), Expect = 3e-082
Identities = 196/210 (93%)
Strand = Plus / Plus
Query: 130 cccccattatcaggcagatatgacatgggtgcaatctgtatgattgagcactctgagaaa 189
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 55 cccccattatcaggcagatatgacatgggtgcaatctgtatgatggagcactctgagaaa 114
Query: 190 cttcagaatcttgttaatgatgctctagacaaaggtgccgaaattgccgtcagggggagt 249
||||||| |||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 115 cttcagagtcttgttaatgatgctctagacaaaggtgctgaaattgctgtcagagggagc 174
Query: 250 tttggcaatcttggggaagatgcagttgatcaatttttcccaccaactggcctggtgaat 309
||||| |||||||| ||| ||||| |||||||||||||| ||||||| ||||||||||
Sbjct: 175 tttgggaatcttggtgaaaatgcanncgatcaatttttccctccaactgtcctggtgaat 234
Query: 310 gttgatcacacaatgaaaattatgcaagaa 339
||||||||||||||||||||||||||||||
Sbjct: 235 gttgatcacacaatgaaaattatgcaagaa 264
Score = 101 bits (51), Expect = 1e-019
Identities = 93/103 (90%), Gaps = 3/103 (2%)
Strand = Plus / Plus
Query: 344 catttggacctattataccaatcatg-aaattcagttctgatgaagaggctatcaaa-ct 401
||||||| || ||| |||| |||||| ||||||| |||||||||||||||||||||| ||
Sbjct: 351 catttggcccaattctacccatcatggaaattcaattctgatgaagaggctatcaaacct 410
Query: 402 tgcaaac-gactcaaaatatggtcttggctgtgctgttttttc 443
||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct: 411 tgcaaacggactcaaagtatggtcttggttgtgctgttttttc 453
>gb|CF427542.1|CF427542 PH1_16_H10.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_16_H10_A002 3', mRNA sequence
Length = 529
Score = 293 bits (148), Expect = 2e-077
Identities = 172/180 (95%)
Strand = Plus / Plus
Query: 671 ctatccagtatcccgtctcagagcatggatttgagttccagcagttgcttgtggagactc 730
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctatccagtatcctgtctcagagcatggatttgagttccagcagttgcttgtggagactc 60
Query: 731 tgtatggctatagcgtgtgggacaggttgcggtcccttgtgaatcttataaagatggtta 790
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtatggctatagcatgtgggacaggttgcggtcccttgtgaatcttataaagatggtta 120
Query: 791 ccgagcagaattctgccccggcttcaaatgcgaccacgaagaaaaggcgatgagacgaat 850
|||||||||| |||||| | | |||||||||||| ||||||||||||||||||| |||||
Sbjct: 121 ccgagcagaactctgcctcagtttcaaatgcgacgacgaagaaaaggcgatgaggcgaat 180
Score = 69.9 bits (35), Expect = 5e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 941 gtttgctctctgaaacaatctcgagcctgggagcttgtg 979
||||||||||||||||||||| |||||||||||||||||
Sbjct: 430 gtttgctctctgaaacaatcttgagcctgggagcttgtg 468
>gb|CW259843.1|CW259843 104_726_11228648_148_35187_026 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228648, DNA
sequence
Length = 710
Score = 283 bits (143), Expect = 2e-074
Identities = 167/175 (95%)
Strand = Plus / Plus
Query: 676 cagtatcccgtctcagagcatggatttgagttccagcagttgcttgtggagactctgtat 735
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 cagtatcctgtctcagagcatggatttgagttccagcagttgcttgtggagactctgtat 163
Query: 736 ggctatagcgtgtgggacaggttgcggtcccttgtgaatcttataaagatggttaccgag 795
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ggctatagcatgtgggacaggttgcggtcccttgtgaatcttataaagatggttaccgag 223
Query: 796 cagaattctgccccggcttcaaatgcgaccacgaagaaaaggcgatgagacgaat 850
||||| |||||| | | |||||||||||| ||||||||||||||||||| |||||
Sbjct: 224 cagaactctgcctcagtttcaaatgcgacgacgaagaaaaggcgatgaggcgaat 278
Score = 69.9 bits (35), Expect = 5e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 941 gtttgctctctgaaacaatctcgagcctgggagcttgtg 979
||||||||||||||||||||| |||||||||||||||||
Sbjct: 528 gtttgctctctgaaacaatcttgagcctgggagcttgtg 566
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 654 aacagtgatcccgaagcctatccag 678
||||||||||||||| |||||||||
Sbjct: 5 aacagtgatcccgaaacctatccag 29
>gb|CW389023.1|CW389023 fsbb001f074a16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f074a16, DNA
sequence
Length = 592
Score = 283 bits (143), Expect = 2e-074
Identities = 167/175 (95%)
Strand = Plus / Plus
Query: 676 cagtatcccgtctcagagcatggatttgagttccagcagttgcttgtggagactctgtat 735
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37 cagtatcctgtctcagagcatggatttgagttccagcagttgcttgtggagactctgtat 96
Query: 736 ggctatagcgtgtgggacaggttgcggtcccttgtgaatcttataaagatggttaccgag 795
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 ggctatagcatgtgggacaggttgcggtcccttgtgaatcttataaagatggttaccgag 156
Query: 796 cagaattctgccccggcttcaaatgcgaccacgaagaaaaggcgatgagacgaat 850
||||| |||||| | | |||||||||||| ||||||||||||||||||| |||||
Sbjct: 157 cagaactctgcctcagtttcaaatgcgacgacgaagaaaaggcgatgaggcgaat 211
Score = 69.9 bits (35), Expect = 5e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 941 gtttgctctctgaaacaatctcgagcctgggagcttgtg 979
||||||||||||||||||||| |||||||||||||||||
Sbjct: 461 gtttgctctctgaaacaatcttgagcctgggagcttgtg 499
>gb|CW377607.1|CW377607 fsbb001f055p23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f055p23, DNA
sequence
Length = 762
Score = 276 bits (139), Expect = 4e-072
Identities = 175/187 (93%)
Strand = Plus / Minus
Query: 344 catttggacctattataccaatcatgaaattcagttctgatgaagaggctatcaaacttg 403
||||||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 532 catttggcccaattctaccaatcatgaaattcaattctgatgaagaggctatcaaacttg 473
Query: 404 caaacgactcaaaatatggtcttggctgtgctgttttttcgggcaaccagaagcgtgcca 463
||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||| |
Sbjct: 472 caaacgactcaaagtatggtcttggttgtgctgttttttctggcgaccagaagcgtgcta 413
Query: 464 tcagaatagcgtcccagttacactgtggggtagcagcaatcaatgattttgcttcaagtt 523
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tcagaatagcatcccaaatacactgtggggtagcagcaatcaatgattttgcttcaagtt 353
Query: 524 acatgtg 530
|||||||
Sbjct: 352 acatgtg 346
Score = 216 bits (109), Expect = 3e-054
Identities = 136/145 (93%)
Strand = Plus / Minus
Query: 198 tcttgttaatgatgctctagacaaaggtgccgaaattgccgtcagggggagttttggcaa 257
|||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||
Sbjct: 760 tcttgttaatgatgctctagacaaaggtgctgaaattgctgtcagagggagctttgggaa 701
Query: 258 tcttggggaagatgcagttgatcaatttttcccaccaactggcctggtgaatgttgatca 317
|||||| ||||||||||| |||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 700 tcttggtgaagatgcagtcgatcaatttttccctccaactgtcctggtgaatgttgatca 641
Query: 318 cacaatgaaaattatgcaagaagag 342
|||||||||||||||||||||||||
Sbjct: 640 cacaatgaaaattatgcaagaagag 616
>gb|CW447661.1|CW447661 fsbb001f180o06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f180o06, DNA
sequence
Length = 639
Score = 230 bits (116), Expect = 2e-058
Identities = 170/188 (90%)
Strand = Plus / Plus
Query: 155 tgggtgcaatctgtatgattgagcactctgagaaacttcagaatcttgttaatgatgctc 214
||||||||||||||| ||| || |||| |||||||||||||||||||||||||||||||
Sbjct: 12 tgggtgcaatctgtacgatagaacactttgagaaacttcagaatcttgttaatgatgctt 71
Query: 215 tagacaaaggtgccgaaattgccgtcagggggagttttggcaatcttggggaagatgcag 274
|||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||
Sbjct: 72 tagacaaaggtgccgaaattgccgtcagattgagctttggcaatcttggtgaagatgcag 131
Query: 275 ttgatcaatttttcccaccaactggcctggtgaatgttgatcacacaatgaaaattatgc 334
||||||| |||||||| ||||||| | |||| |||||| |||||| | ||||||||||||
Sbjct: 132 ttgatcagtttttccctccaactgtcatggtaaatgttaatcacatagtgaaaattatgc 191
Query: 335 aagaagag 342
||||||||
Sbjct: 192 aagaagag 199
Score = 163 bits (82), Expect = 4e-038
Identities = 152/175 (86%), Gaps = 9/175 (5%)
Strand = Plus / Plus
Query: 363 aatcatgaaattcagttctgatgaagaggctatcaaacttgcaaacgactcaaaa----- 417
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 237 aatcatgaaattcagttctgatgaagaggctatcaaacttggaaacgactcaaatctcaa 296
Query: 418 --tatggtcttggctgtgctgttttttcgggcaaccagaagcgtgccatcagaatagcgt 475
|||||| |||| || |||| |||||| |||||||||||||||||||||||||||| |
Sbjct: 297 agtatggtattggttgggctggtttttctcgcaaccagaagcgtgccatcagaatagcat 356
Query: 476 cccagttacactgtggggtagcagcaatcaatgattttgcttcaagttacatgtg 530
|||| |||||| || |||| ||||||||||||||||| |||||||||||||||
Sbjct: 357 cccaattacac--tgaagtagtagcaatcaatgattttgattcaagttacatgtg 409
Score = 63.9 bits (32), Expect = 3e-008
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 533 agtctttgccattcggtggtgttaaagacagcggattcgggagatttg 580
|||||||||||||||||| |||||||||||| ||||| || |||||||
Sbjct: 582 agtctttgccattcggtgatgttaaagacagtggatttggtagatttg 629
>gb|CW498331.1|CW498331 fsbb001f291i07k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f291i07, DNA
sequence
Length = 641
Score = 230 bits (116), Expect = 2e-058
Identities = 170/188 (90%)
Strand = Plus / Plus
Query: 155 tgggtgcaatctgtatgattgagcactctgagaaacttcagaatcttgttaatgatgctc 214
||||||||||||||| ||| || |||| |||||||||||||||||||||||||||||||
Sbjct: 42 tgggtgcaatctgtacgatagaacactttgagaaacttcagaatcttgttaatgatgctt 101
Query: 215 tagacaaaggtgccgaaattgccgtcagggggagttttggcaatcttggggaagatgcag 274
|||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||
Sbjct: 102 tagacaaaggtgccgaaattgccgtcagattgagctttggcaatcttggtgaagatgcag 161
Query: 275 ttgatcaatttttcccaccaactggcctggtgaatgttgatcacacaatgaaaattatgc 334
||||||| |||||||| ||||||| | |||| |||||| |||||| | ||||||||||||
Sbjct: 162 ttgatcagtttttccctccaactgtcatggtaaatgttaatcacatagtgaaaattatgc 221
Query: 335 aagaagag 342
||||||||
Sbjct: 222 aagaagag 229
Score = 163 bits (82), Expect = 4e-038
Identities = 152/175 (86%), Gaps = 9/175 (5%)
Strand = Plus / Plus
Query: 363 aatcatgaaattcagttctgatgaagaggctatcaaacttgcaaacgactcaaaa----- 417
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 267 aatcatgaaattcagttctgatgaagaggctatcaaacttggaaacgactcaaatctcaa 326
Query: 418 --tatggtcttggctgtgctgttttttcgggcaaccagaagcgtgccatcagaatagcgt 475
|||||| |||| || |||| |||||| |||||||||||||||||||||||||||| |
Sbjct: 327 agtatggtattggttgggctggtttttctcgcaaccagaagcgtgccatcagaatagcat 386
Query: 476 cccagttacactgtggggtagcagcaatcaatgattttgcttcaagttacatgtg 530
|||| |||||| || |||| ||||||||||||||||| |||||||||||||||
Sbjct: 387 cccaattacac--tgaagtagtagcaatcaatgattttgattcaagttacatgtg 439
Score = 52.0 bits (26), Expect = 1e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 533 agtctttgccattcggtggtgttaaagaca 562
|||||||||||||||||| |||||||||||
Sbjct: 612 agtctttgccattcggtgatgttaaagaca 641
>gb|CW298748.1|CW298748 104_781_11462740_116_35659_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462740, DNA
sequence
Length = 569
Score = 139 bits (70), Expect = 6e-031
Identities = 85/90 (94%)
Strand = Plus / Plus
Query: 755 ggttgcggtcccttgtgaatcttataaagatggttaccgagcagaattctgccccggctt 814
|||||||||||||||||||||||||||||||||||||||||||||| |||||| | | ||
Sbjct: 2 ggttgcggtcccttgtgaatcttataaagatggttaccgagcagaactctgcctcagttt 61
Query: 815 caaatgcgaccacgaagaaaaggcgatgag 844
|||||||||| |||||||||||||||||||
Sbjct: 62 caaatgcgacgacgaagaaaaggcgatgag 91
Score = 69.9 bits (35), Expect = 5e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 941 gtttgctctctgaaacaatctcgagcctgggagcttgtg 979
||||||||||||||||||||| |||||||||||||||||
Sbjct: 347 gtttgctctctgaaacaatcttgagcctgggagcttgtg 385
>gb|CW498330.1|CW498330 fsbb001f291i07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f291i07, DNA
sequence
Length = 755
Score = 79.8 bits (40), Expect = 5e-013
Identities = 125/153 (81%), Gaps = 4/153 (2%)
Strand = Plus / Minus
Query: 692 agcatggatttgagttccagcagttgcttgtggagactctgtatggctatagcgtgtggg 751
||||||| ||||| |||||| ||||||| ||||||||||||||||| | ||| ||
Sbjct: 663 agcatggctttgaattccaggagttgctcgtggagactctgtatggttg----gtgctgg 608
Query: 752 acaggttgcggtcccttgtgaatcttataaagatggttaccgagcagaattctgccccgg 811
||||| || |||||||||| ||||||||||||| || ||||| ||| | |||||| | |
Sbjct: 607 acaggctgtggtcccttgttgatcttataaagatcgtcaccgatcaggactctgcctcag 548
Query: 812 cttcaaatgcgaccacgaagaaaaggcgatgag 844
||||||||||| || |||| |||||||||||
Sbjct: 547 cttcaaatgcgcagacaaagagaaggcgatgag 515
>gb|CW089571.1|CW089571 104_435_10948786_114_32597_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948786, DNA
sequence
Length = 720
Score = 69.9 bits (35), Expect = 5e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 941 gtttgctctctgaaacaatctcgagcctgggagcttgtg 979
||||||||||||||||||||| |||||||||||||||||
Sbjct: 211 gtttgctctctgaaacaatcttgagcctgggagcttgtg 249
>gb|CW026765.1|CW026765 104_253_10498134_114_30533 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498134, DNA
sequence
Length = 289
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 185 agaaacttcagaatcttgttaatgat 210
||||||| ||||||||||||||||||
Sbjct: 110 agaaactccagaatcttgttaatgat 85
>gb|CW112229.1|CW112229 104_486_11104774_116_34546_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104774, DNA
sequence
Length = 579
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 608 gccttgtgaagtctgttgta 627
||||||||||||||||||||
Sbjct: 511 gccttgtgaagtctgttgta 530
>gb|CW121127.1|CW121127 104_498_11109722_148_34656_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11109722, DNA
sequence
Length = 687
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 608 gccttgtgaagtctgttgta 627
||||||||||||||||||||
Sbjct: 279 gccttgtgaagtctgttgta 260
>gb|CW136461.1|CW136461 104_521_11118394_148_34841_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11118394, DNA
sequence
Length = 652
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 608 gccttgtgaagtctgttgta 627
||||||||||||||||||||
Sbjct: 112 gccttgtgaagtctgttgta 131
>gb|BG356438.1|BG356438 EM1_22_E08.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 162
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 827 cgaagaaaaggcgatgagacgaat 850
|||||||||||||||||| |||||
Sbjct: 2 cgaagaaaaggcgatgaggcgaat 25
>gb|BG410721.1|BG410721 EM1_25_B04.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 650
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 608 gccttgtgaagtctgttgta 627
||||||||||||||||||||
Sbjct: 473 gccttgtgaagtctgttgta 492
>gb|CD236008.1|CD236008 SS1_25_G01.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_25_G01_A012 3', mRNA sequence
Length = 447
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 608 gccttgtgaagtctgttgta 627
||||||||||||||||||||
Sbjct: 259 gccttgtgaagtctgttgta 278
>gb|CF071882.1|CF071882 FE1_19_B06.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_19_B06_A002 3', mRNA sequence
Length = 669
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 608 gccttgtgaagtctgttgta 627
||||||||||||||||||||
Sbjct: 441 gccttgtgaagtctgttgta 460
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 238,316
Number of Sequences: 832831
Number of extensions: 238316
Number of successful extensions: 60970
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60887
Number of HSP's gapped (non-prelim): 80
length of query: 1126
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1106
effective length of database: 474,703,049
effective search space: 525021572194
effective search space used: 525021572194
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)