BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750663.2.1
(1282 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF587001.1|BF587001 FM1_32_A10.g1_A003 Floral-Induced Me... 389 e-106
gb|CW089385.1|CW089385 104_434_10948678_115_32585_083 Sorgh... 278 1e-072
gb|CW784439.1|CW784439 SP__Bb0020B10.f SP__Bb Sorghum propi... 204 1e-050
gb|CW486829.1|CW486829 fsbb001f252f08k0 Sorghum methylation... 163 5e-038
gb|CW359136.1|CW359136 fsbb001f026k03f0 Sorghum methylation... 92 2e-016
gb|CL147648.1|CL147648 104_327_10592534_116_31781_042 Sorgh... 46 0.008
>gb|BF587001.1|BF587001 FM1_32_A10.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 522
Score = 389 bits (196), Expect = e-106
Identities = 280/309 (90%)
Strand = Plus / Minus
Query: 134 ctacgcctcaacaggactgggccctcttgggctaccggtgctgctctgttgctcgtactc 193
||||||||| |||| |||||||||| |||||||||| |||||||| ||||| |||||
Sbjct: 309 ctacgcctctacagaactgggccctnnngggctaccggcactgctctgatgctcatactc 250
Query: 194 ctggcttggaaaaacatcaggcagcagactagccgagatgttgtgcgcgtgaagccacgt 253
||| |||||||||||||||||||||| ||||| |||||||||| |||||||||||||||
Sbjct: 249 ctgacttggaaaaacatcaggcagcaaactagttgagatgttgttcgcgtgaagccacgt 190
Query: 254 cagctcccacaggctgtcgcccccgatcgtgctcctcttcgcaaggatgcccttgctctt 313
||||||||||| |||||| ||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 189 cagctcccacaagctgtcacccccaatcgtgctcctcttcgcaaggatgcccttgttctt 130
Query: 314 catcacgagcagaatgttcttgagcaggtccgggaccacctcctgcagccggtcgctccg 373
||||||||| ||||||||||||||||||||||||| |||||| |||||| ||| |||||
Sbjct: 129 catcacgagtagaatgttcttgagcaggtccgggatcacctcttgcagcttgtcactccg 70
Query: 374 cttgcctcggaccttgaccttgacgtacttctccatccggctcaggacccccagccacag 433
||||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||
Sbjct: 69 cttgcctcggaccttgatcttgatgtatttctccatccggctcaggactcccagccacag 10
Query: 434 cttgcagaa 442
||||||||
Sbjct: 9 tttgcagaa 1
Score = 97.6 bits (49), Expect = 2e-018
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 11 gcgaaacgcaatcacaatatcgaaaccttacacttccaatggattagggcacgagcagta 70
||||||| ||| |||||||| ||||||||||||| ||||||||||||||||||| || |
Sbjct: 448 gcgaaacaaaattacaatatcaaaaccttacactttcaatggattagggcacgagtagca 389
Query: 71 gtaaacctagtaaaacaaataaaac 95
||||||||||| ||||| |||||||
Sbjct: 388 gtaaacctagttaaacacataaaac 364
>gb|CW089385.1|CW089385 104_434_10948678_115_32585_083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948678, DNA
sequence
Length = 671
Score = 278 bits (140), Expect = 1e-072
Identities = 238/269 (88%), Gaps = 5/269 (1%)
Strand = Plus / Minus
Query: 36 ccttacacttccaatggattagggcacgagcagtagtaaacctagtaaaacaaataaaac 95
|||||||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||
Sbjct: 268 ccttacactttcaatggattagggcacgactagtagtaaacctagttaaacacataaaac 209
Query: 96 atacacacac----ggtcgcacacaagttaaaacattgaccgctacgcctcaacaggact 151
||||||||| ||||||| |||| || || | || | | ||||||||| |||| |||
Sbjct: 208 ttacacacacacacggtcgcagacaacttcaa-cttttagcactacgcctctacagaact 150
Query: 152 gggccctcttgggctaccggtgctgctctgttgctcgtactcctggcttggaaaaacatc 211
|||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct: 149 gggccctcttgggctaccggcactgctctgttgctcatactcctgacttggaaaaacatc 90
Query: 212 aggcagcagactagccgagatgttgtgcgcgtgaagccacgtcagctcccacaggctgtc 271
|||||||| ||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 89 aggcagcaaactagttgagatgttgttcgcgtgaagccacgtcagctcccacaagctgtc 30
Query: 272 gcccccgatcgtgctcctcttcgcaagga 300
||||| ||||||||||||||||||||||
Sbjct: 29 acccccaatcgtgctcctcttcgcaagga 1
Score = 46.1 bits (23), Expect = 0.008
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 11 gcgaaacgcaatcacaatatcgaaaccttacactt 45
||||||| |||| |||||||| |||||||||||||
Sbjct: 323 gcgaaacacaattacaatatcaaaaccttacactt 289
>gb|CW784439.1|CW784439 SP__Bb0020B10.f SP__Bb Sorghum propinquum genomic clone SP__Bb0020B10
5', DNA sequence
Length = 850
Score = 204 bits (103), Expect = 1e-050
Identities = 115/119 (96%)
Strand = Plus / Plus
Query: 1164 gacctcagtaattcatcagcaagattctccttgtatggtagcaacctctggcatatcctc 1223
||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct: 1 gacctcagtaattcatcagcaagattctccttgtatggtagtaaactcttgcatatcctc 60
Query: 1224 aggagtccaaaaatagctttctccacgagagcacacggcataactgtggactgaactat 1282
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 61 aggagtccaaaaatagctttctccacaagagcacacggcataactgtggactgaactat 119
>gb|CW486829.1|CW486829 fsbb001f252f08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252f08, DNA
sequence
Length = 593
Score = 163 bits (82), Expect = 5e-038
Identities = 166/191 (86%), Gaps = 6/191 (3%)
Strand = Plus / Minus
Query: 36 ccttacacttccaatggattagggcacgagcagtagtaaacctagtaaaacaaataaaac 95
|||||||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||
Sbjct: 202 ccttacactttcaatggattagggcacgactagtagtaaacctagttaaacacataaaac 143
Query: 96 atacacacac----ggtcgcacacaagttaaaacattgaccgctacgcctcaacaggact 151
||||||||| ||||||| |||| || || | || | | ||||||||| |||| |||
Sbjct: 142 ttacacacacacacggtcgcagacaacttcaa-cttttagcactacgcctctacagaact 84
Query: 152 gggccctcttgggctaccggtgctgctctgttgctcgtactcctggcttggaaaaacatc 211
|||||||||||||||||||| |||||||||||||| |||||||| | ||||||||||||
Sbjct: 83 gggccctcttgggctaccggcactgctctgttgctcatactcctgac-tggaaaaacatc 25
Query: 212 aggcagcagac 222
|||||||||||
Sbjct: 24 aggcagcagac 14
Score = 46.1 bits (23), Expect = 0.008
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 11 gcgaaacgcaatcacaatatcgaaaccttacactt 45
||||||| |||| |||||||| |||||||||||||
Sbjct: 257 gcgaaacacaattacaatatcaaaaccttacactt 223
>gb|CW359136.1|CW359136 fsbb001f026k03f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f026k03, DNA
sequence
Length = 567
Score = 91.7 bits (46), Expect = 2e-016
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 36 ccttacacttccaatggattagggcacgagcagtagtaaacctagtaaaacaaataaaac 95
|||||||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||
Sbjct: 85 ccttacactttcaatggattagggcacgactagtagtaaacctagttaaacacataaaac 26
Query: 96 atacacacac 105
|||||||||
Sbjct: 25 ttacacacac 16
Score = 46.1 bits (23), Expect = 0.008
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 11 gcgaaacgcaatcacaatatcgaaaccttacactt 45
||||||| |||| |||||||| |||||||||||||
Sbjct: 140 gcgaaacacaattacaatatcaaaaccttacactt 106
>gb|CL147648.1|CL147648 104_327_10592534_116_31781_042 Sorghum methylation-filtered
library (LibID: 104) Sorghum bicolor genomic clone
10592534, DNA sequence
Length = 724
Score = 46.1 bits (23), Expect = 0.008
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 11 gcgaaacgcaatcacaatatcgaaaccttacactt 45
||||||| |||| |||||||| |||||||||||||
Sbjct: 75 gcgaaacacaattacaatatcaaaaccttacactt 41
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 289,257
Number of Sequences: 832831
Number of extensions: 289257
Number of successful extensions: 77247
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77230
Number of HSP's gapped (non-prelim): 16
length of query: 1282
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1262
effective length of database: 474,703,049
effective search space: 599075247838
effective search space used: 599075247838
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)