BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750422.2.1
(1599 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN131216.1|CN131216 RHOH1_46_C11.g1_A002 Acid- and alkal... 1035 0.0
gb|CN152739.1|CN152739 WOUND1_83_H10.g1_A002 Wounded leaves... 957 0.0
gb|CN126564.1|CN126564 RHOH1_17_H10.g1_A002 Acid- and alkal... 870 0.0
gb|CN131388.1|CN131388 RHOH1_47_E09.g1_A002 Acid- and alkal... 821 0.0
gb|CX612475.1|CX612475 GABR1_2_D09.g1_A002 GA- or brassinol... 672 0.0
gb|CX607563.1|CX607563 ANR1_29_A08.g1_A002 Anaerobic roots ... 505 e-141
gb|CB925399.1|CB925399 ABA1_32_F06.g1_A012 Abscisic acid-tr... 502 e-140
gb|BE359276.1|BE359276 DG1_40_B04.b1_A002 Dark Grown 1 (DG1... 492 e-137
gb|CD225315.1|CD225315 CCC1_39_A06.g1_A007 Callus culture/c... 329 5e-088
gb|CN129621.1|CN129621 RHOH1_36_A07.g1_A002 Acid- and alkal... 327 2e-087
gb|CW478010.1|CW478010 fsbb001f235k11k0 Sorghum methylation... 280 4e-073
gb|CW478009.1|CW478009 fsbb001f235k11f0 Sorghum methylation... 266 6e-069
gb|BG102288.1|BG102288 RHIZ2_24_D11.b1_A003 Rhizome2 (RHIZ2... 266 6e-069
gb|CN152649.1|CN152649 WOUND1_83_H10.b1_A002 Wounded leaves... 246 5e-063
gb|CX612384.1|CX612384 GABR1_2_D09.b1_A002 GA- or brassinol... 240 3e-061
gb|BG102069.1|BG102069 RHIZ2_24_D11.g1_A003 Rhizome2 (RHIZ2... 186 4e-045
gb|CN129535.1|CN129535 RHOH1_36_A07.b3_A002 Acid- and alkal... 186 4e-045
gb|CX607480.1|CX607480 ANR1_29_A08.b1_A002 Anaerobic roots ... 178 1e-042
gb|CW189649.1|CW189649 104_611_11174075_116_36745_048 Sorgh... 172 6e-041
gb|CW189650.1|CW189650 104_611_11174075_148_36746_048 Sorgh... 172 6e-041
gb|CW276053.1|CW276053 104_749_11405284_148_35391_006 Sorgh... 172 6e-041
gb|CW433737.1|CW433737 fsbb001f149b13f0 Sorghum methylation... 172 6e-041
gb|CN131133.1|CN131133 RHOH1_46_C11.b1_A002 Acid- and alkal... 163 6e-038
gb|CD225212.1|CD225212 CCC1_39_A06.b1_A007 Callus culture/c... 147 4e-033
gb|CF431957.1|CF431957 NIT1_16_E06.b1_A002 Nitrogen-deficie... 101 2e-019
gb|CB925296.1|CB925296 ABA1_32_F06.b1_A012 Abscisic acid-tr... 98 3e-018
gb|BG050491.1|BG050491 FM1_70_A08.g1_A003 Floral-Induced Me... 96 1e-017
gb|CN131317.1|CN131317 RHOH1_47_E09.b1_A002 Acid- and alkal... 96 1e-017
gb|CD209819.1|CD209819 HS1_55_B02.b1_A012 Heat-shocked seed... 80 7e-013
gb|DN551715.1|DN551715 pSPR-L_H08_C233 pSPR Sorghum propinq... 64 4e-008
gb|BI212016.1|BI212016 IP1_63_D08.g1_A002 Immature pannicle... 50 6e-004
gb|CD207263.1|CD207263 HS1_62_H08.g1_A012 Heat-shocked seed... 50 6e-004
gb|CD424906.1|CD424906 SA1_9_F07.b1_A002 Salicylic acid-tre... 50 6e-004
gb|CF488488.1|CF488488 POL1_50_G05.b1_A002 Pollen Sorghum b... 50 6e-004
gb|CX607368.1|CX607368 ANR1_8_F01.b1_A002 Anaerobic roots S... 50 6e-004
gb|CX616272.1|CX616272 GABR1_27_A03.b1_A002 GA- or brassino... 50 6e-004
gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-resp... 50 6e-004
gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-respo... 50 6e-004
gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 50 6e-004
gb|BI074755.1|BI074755 IP1_15_D09.b1_A002 Immature pannicle... 48 0.003
gb|BI074756.1|BI074756 IP1_15_D10.b1_A002 Immature pannicle... 48 0.003
gb|BZ422925.1|BZ422925 hz32b08.g1 WGS-SbicolorF (DH5a methy... 46 0.010
gb|BZ691025.1|BZ691025 SP__Ba0001C15.f SP__Ba Sorghum propi... 46 0.010
gb|CW122018.1|CW122018 104_500_11110323_116_34665_008 Sorgh... 46 0.010
gb|CW784589.1|CW784589 SP__Ba0001C15.f SP__Ba Sorghum propi... 46 0.010
gb|DR831552.2|DR831552 MT106 Sorghum bicolor greenbug-respo... 46 0.010
gb|CW147614.1|CW147614 104_540_11139598_148_34995_081 Sorgh... 44 0.040
gb|CW201784.1|CW201784 104_627_11184750_148_37111_019 Sorgh... 44 0.040
gb|CW382673.1|CW382673 fsbb001f064m12k0 Sorghum methylation... 44 0.040
gb|BE359413.1|BE359413 DG1_40_B04.g1_A002 Dark Grown 1 (DG1... 44 0.040
gb|CD226824.1|CD226824 CCC1_48_F04.b1_A007 Callus culture/c... 44 0.040
gb|DV162819.1|DV162819 P5-B11 Sorghum bicolor greenbug-resp... 44 0.040
gb|DV162821.1|DV162821 P2-F11 Sorghum bicolor greenbug-resp... 44 0.040
gb|DV162821.2|DV162821 P2-F11 Sorghum bicolor greenbug-resp... 44 0.040
gb|CD424927.1|CD424927 SA1_9_F07.g1_A002 Salicylic acid-tre... 42 0.16
gb|CF675626.1|CF675626 THAU2 Subtractive cDNA library from ... 42 0.16
>gb|CN131216.1|CN131216 RHOH1_46_C11.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_46_C11_A002 5', mRNA sequence
Length = 823
Score = 1035 bits (522), Expect = 0.0
Identities = 663/710 (93%)
Strand = Plus / Minus
Query: 469 ccttatgaaagcaaatggttgcgccctggtgagtgccagccatgcttcactcctcagcaa 528
|||||||||||||||||||||| || | ||||||| || ||| | ||||||||||||| |
Sbjct: 750 ccttatgaaagcaaatggttgcacctttgtgagtgtcaaccacgtttcactcctcagcga 691
Query: 529 cacgactcttggcttcgtccacattgctggcagattgccctgctgcttcggccttcttgt 588
||||||||||| |||| ||| ||||| |||||||||| || ||| |||||||||| || |
Sbjct: 690 cacgactcttgacttcatccgcattgttggcagattgacccgctacttcggcctttttat 631
Query: 589 tccgatcgacaggttttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctc 648
|||||| ||| |||||||| | |||||||||||||||||||||||| |||||||| ||||
Sbjct: 630 tccgattgactggtttttttatctgcaccaggatcatggtcatgttatcgcacccatctc 571
Query: 649 cagcgatcgttgatggagccaggcatctgtccagcactctctcgcacacggcagacaggc 708
|| ||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct: 570 caccgatcgttgatggagccaggcatctgtccagcactctttcacacacggcagataggc 511
Query: 709 tgctctccgtgtttatacgctcgtggataaaatccaccagctgttggcttgacatgcagt 768
|||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 510 tgctctccatgtttatacgctcatggatgaaatccaccagctgttggcttgacatgcagt 451
Query: 769 cccaaatgccatcacatgctacaacaacaaagtcgtcatcatcgcagagctccacgacgt 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 450 cccaaatgccatcacatgctacaacaacaaagtcgtcatcatcgcagagctccacaacgt 391
Query: 829 tgatatcaggattggccgtcacaatttgcttctcgggaggcaggaatttgttctgtttca 888
| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 taatgtcaggattggctgtcacaatttgcttctcgggaggcaggaatttgttctgtttca 331
Query: 889 attccacgtctccaattgcccttgacaagtttaaacttccatttactcgtcccatatgga 948
||||||| ||||||||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct: 330 attccacatctccaattgctctagacaagtttagacttccatttactcgtcccatatgga 271
Query: 949 tgaagccccctgctttcattatcctttctctctcagctgcaagctctggtttgtggtccc 1008
|||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 270 tgaacccccctgctttcattattctttctctctcaactgcaagctctggtttgtggtccc 211
Query: 1009 tcgataaattgtatgccttcccaccccttgaaataacacatcgggaatcaccagcatttg 1068
| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ttgatagattgtatgcctttccaccccttgaaataacacatcgggaatcaccagcatttg 151
Query: 1069 ccacaacaagttgggtgtttcttattaatgctacacacgctgtactcccacatgttggcc 1128
||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 150 ccacaacaagttgggagtttcttattagtgctacacatgctgtactcccacatgttggcc 91
Query: 1129 cagcaaagtcagagtgaggtccctcctctgaagcccaatcatcttgttga 1178
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 cagcaaagtcagagtgaggtccctcctctgaagcccaatcatcttgttga 41
>gb|CN152739.1|CN152739 WOUND1_83_H10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_83_H10_A002 5', mRNA sequence
Length = 825
Score = 957 bits (483), Expect = 0.0
Identities = 630/679 (92%)
Strand = Plus / Minus
Query: 469 ccttatgaaagcaaatggttgcgccctggtgagtgccagccatgcttcactcctcagcaa 528
||||||| |||||||||||||| || | ||||||| || ||| | ||||||||||||| |
Sbjct: 760 ccttatgtaagcaaatggttgcacctttgtgagtgtcaaccacgtttcactcctcagcga 701
Query: 529 cacgactcttggcttcgtccacattgctggcagattgccctgctgcttcggccttcttgt 588
||||||||||| |||| ||| ||||| |||||||||| || ||| |||||||||| || |
Sbjct: 700 cacgactcttgacttcatccgcattgttggcagattgacccgctacttcggcctttttat 641
Query: 589 tccgatcgacaggttttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctc 648
|||||| ||| |||||||| | |||||||||||||||||||||||| |||||||| ||||
Sbjct: 640 tccgattgactggtttttttatctgcaccaggatcatggtcatgttatcgcacccatctc 581
Query: 649 cagcgatcgttgatggagccaggcatctgtccagcactctctcgcacacggcagacaggc 708
|| ||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct: 580 caccgatcgttgatggagccaggcatctgtccagcactctttcacacacggcagataggc 521
Query: 709 tgctctccgtgtttatacgctcgtggataaaatccaccagctgttggcttgacatgcagt 768
|||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 520 tgctctccatgtttatacgctcatggatgaaatccaccagctgttggcttgacatgcagt 461
Query: 769 cccaaatgccatcacatgctacaacaacaaagtcgtcatcatcgcagagctccacgacgt 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 460 cccaaatgccatcacatgctacaacaacaaagtcgtcatcatcgcagagctccacaacgt 401
Query: 829 tgatatcaggattggccgtcacaatttgcttctcgggaggcaggaatttgttctgtttca 888
| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 taatgtcaggattggctgtcacaatttgcttctcgggaggcaggaatttgttctgtttca 341
Query: 889 attccacgtctccaattgcccttgacaagtttaaacttccatttactcgtcccatatgga 948
||||||| ||||||||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct: 340 attccacatctccaattgctctagacaagtttagacttccatttactcgtcccatatgga 281
Query: 949 tgaagccccctgctttcattatcctttctctctcagctgcaagctctggtttgtggtccc 1008
|||| ||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 280 tgaacccccctgctttcattattctttctctctcaactgcaagctctagtttgtggtccc 221
Query: 1009 tcgataaattgtatgccttcccaccccttgaaataacacatcgggaatcaccagcatttg 1068
| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ttgatagattgtatgcctttccaccccttgaaataacacatcgggaatcaccagcatttg 161
Query: 1069 ccacaacaagttgggtgtttcttattaatgctacacacgctgtactcccacatgttggcc 1128
||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 160 ccacaacaagttgggagtttcttattagtgctacacatgctgtactcccacatgttggcc 101
Query: 1129 cagcaaagtcagagtgagg 1147
|||||||||||||||||||
Sbjct: 100 cagcaaagtcagagtgagg 82
>gb|CN126564.1|CN126564 RHOH1_17_H10.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_17_H10_A002 5', mRNA sequence
Length = 846
Score = 870 bits (439), Expect = 0.0
Identities = 490/507 (96%)
Strand = Plus / Minus
Query: 1070 cacaacaagttgggtgtttcttattaatgctacacacgctgtactcccacatgttggccc 1129
|||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 846 cacaacaagttgggagtttcttattagtgctacacatgctgtactcccacatgttggccc 787
Query: 1130 agcaaagtcagagtgaggtccctcctctgaagcccaatcatcttgttgattatttgaatc 1189
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 786 agcaaagtcagagtgaggtccctcctctgaagcccaatcatcttgttgactattcgaatc 727
Query: 1190 actgccccttggagaccaaatcaatccttctatcataccactaaacttgtttattttgtc 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 actgccccttggagaccaaatcaatccttctatcataccactaaacttgtttattttgtc 667
Query: 1250 tccaagtgcagatagttctcgccaacctctctgtccttgcatcatttcatccattctgaa 1309
|||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 666 tccaagtgcagaaagttctcgccaacctctctgccctcgcatcatttcatccattctgaa 607
Query: 1310 gaaagctctatggacagcagcgcctaggtcaccagttgaataggcttcgcttttgaggac 1369
||||||||||||||||||||| ||||||||||| | |||||||||||| |||||||| ||
Sbjct: 606 gaaagctctatggacagcagctcctaggtcacccgctgaataggcttcacttttgagaac 547
Query: 1370 ttgaccatgcagatattttgcacagaatttggcaacgactcttcctccatgaccatcaaa 1429
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 546 ttgaccatgcagatattttgcacagaatttggcaaccactcttcctccatgaccatcaaa 487
Query: 1430 aacaccaaagaatgctgtctcgctatcaagatctagcaatgctgaatgagcatcttccat 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aacaccaaagaatgctgtctcgctatcaagatctagcaatgctgaatgagcatcttccat 427
Query: 1490 ggttgctcgccatccttgcatagatgaaagacctaacttaagtctatcattttctccatt 1549
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 426 ggttgctcgccatccttgcatagatgaaagaccaaatttaagtctatcattttctccatt 367
Query: 1550 ttcagatagcttgtcagtttttggagt 1576
|||||||||||| ||||||||||||||
Sbjct: 366 ttcagatagcttatcagtttttggagt 340
>gb|CN131388.1|CN131388 RHOH1_47_E09.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_47_E09_A002 5', mRNA sequence
Length = 816
Score = 821 bits (414), Expect = 0.0
Identities = 456/470 (97%)
Strand = Plus / Minus
Query: 1107 gctgtactcccacatgttggcccagcaaagtcagagtgaggtccctcctctgaagcccaa 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gctgtactcccacatgttggcccagcaaagtcagagtgaggtccctcctctgaagcccaa 757
Query: 1167 tcatcttgttgattatttgaatcactgccccttggagaccaaatcaatccttctatcata 1226
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tcatcttgttgactattcgaatcactgccccttggagaccaaatcaatccttctatcata 697
Query: 1227 ccactaaacttgtttattttgtctccaagtgcagatagttctcgccaacctctctgtcct 1286
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 696 ccactaaacttgtttattttgtctccaagtgcagaaagttctcgccaacctctctgccct 637
Query: 1287 tgcatcatttcatccattctgaagaaagctctatggacagcagcgcctaggtcaccagtt 1346
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct: 636 cgcatcatttcatccattctgaagaaagctctatggacagcagctcctaggtcacccgct 577
Query: 1347 gaataggcttcgcttttgaggacttgaccatgcagatattttgcacagaatttggcaacg 1406
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gaataggcttcacttttgagaacttgaccatgcagatattttgcacagaatttggcaacc 517
Query: 1407 actcttcctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagc 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 actcttcctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagc 457
Query: 1467 aatgctgaatgagcatcttccatggttgctcgccatccttgcatagatgaaagacctaac 1526
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 456 aatgctgaatgagcatcttccatggttgctcgccatccttgcatagatgaaagaccaaat 397
Query: 1527 ttaagtctatcattttctccattttcagatagcttgtcagtttttggagt 1576
||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 396 ttaagtctatcattttctccattttcagatagcttatcagtttttggagt 347
>gb|CX612475.1|CX612475 GABR1_2_D09.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_2_D09_A002 5', mRNA sequence
Length = 737
Score = 672 bits (339), Expect = 0.0
Identities = 378/391 (96%)
Strand = Plus / Minus
Query: 1186 aatcactgccccttggagaccaaatcaatccttctatcataccactaaacttgtttattt 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aatcactgccccttggagaccaaatcaatccttctatcataccactaaacttgtttattt 678
Query: 1246 tgtctccaagtgcagatagttctcgccaacctctctgtccttgcatcatttcatccattc 1305
|||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 677 tgtctccaagtgcagaaagttctcgccaacctctctgccctcgcatcatttcatccattc 618
Query: 1306 tgaagaaagctctatggacagcagcgcctaggtcaccagttgaataggcttcgcttttga 1365
||||||||||||||||||||||||| ||||||||||| | |||||||||||| |||||||
Sbjct: 617 tgaagaaagctctatggacagcagctcctaggtcacccgctgaataggcttcacttttga 558
Query: 1366 ggacttgaccatgcagatattttgcacagaatttggcaacgactcttcctccatgaccat 1425
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 557 gaacttgaccatgcagatattttgcacagaatttggcaaccactcttcctccatgaccat 498
Query: 1426 caaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgctgaatgagcatctt 1485
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 497 caaaaacaccaaagaatgctgtctcgctattaagatctagcaatgctgaatgagcatctt 438
Query: 1486 ccatggttgctcgccatccttgcatagatgaaagacctaacttaagtctatcattttctc 1545
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 437 ccatggttgctcgccatccttgcatagatgaaagaccaaatttaagtctatcattttctc 378
Query: 1546 cattttcagatagcttgtcagtttttggagt 1576
|||||||||||||||| ||||||||||||||
Sbjct: 377 cattttcagatagcttatcagtttttggagt 347
>gb|CX607563.1|CX607563 ANR1_29_A08.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_29_A08_A002 5', mRNA sequence
Length = 631
Score = 505 bits (255), Expect = e-141
Identities = 297/311 (95%)
Strand = Plus / Minus
Query: 1266 tctcgccaacctctctgtccttgcatcatttcatccattctgaagaaagctctatggaca 1325
||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 629 tctcgccaacctctctgccctcgcatcatttcatccattgtgaagaaagctctatggaca 570
Query: 1326 gcagcgcctaggtcaccagttgaataggcttcgcttttgaggacttgaccatgcagatat 1385
||||| | ||||||||| | |||||||||||| |||||||| ||||||||||||||||||
Sbjct: 569 gcagctcataggtcacccgctgaataggcttcacttttgagaacttgaccatgcagatat 510
Query: 1386 tttgcacagaatttggcaacgactcttcctccatgaccatcaaaaacaccaaagaatgct 1445
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tttgcacagaatttggcaaccactcttcctccatgaccatcaaaaacaccaaagaatgct 450
Query: 1446 gtctcgctatcaagatctagcaatgctgaatgagcatcttccatggttgctcgccatcct 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gtctcgctatcaagatctagcaatgctgaatgagcatcttccatggttgctcgccatcct 390
Query: 1506 tgcatagatgaaagacctaacttaagtctatcattttctccattttcagatagcttgtca 1565
|||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct: 389 tgcatagatgaacgaccaaatttaagtctatcattttctccattttcagatagcttatca 330
Query: 1566 gtttttggagt 1576
|||||||||||
Sbjct: 329 gtttttggagt 319
>gb|CB925399.1|CB925399 ABA1_32_F06.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_32_F06_A012 5', mRNA sequence
Length = 644
Score = 502 bits (253), Expect = e-140
Identities = 280/289 (96%)
Strand = Plus / Minus
Query: 1288 gcatcatttcatccattctgaagaaagctctatggacagcagcgcctaggtcaccagttg 1347
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct: 643 gcatcatttcatccattctgaagaaagctctatggacagcagctcctaggtcacccgctg 584
Query: 1348 aataggcttcgcttttgaggacttgaccatgcagatattttgcacagaatttggcaacga 1407
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 583 aataggcttcacttttgagaacttgaccatgcagatattttgcacagaatttggcaacca 524
Query: 1408 ctcttcctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagca 1467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ctcttcctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagca 464
Query: 1468 atgctgaatgagcatcttccatggttgctcgccatccttgcatagatgaaagacctaact 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 463 atgctgaatgagcatcttccatggttgctcgccatccttgcatagatgaaagaccaaatt 404
Query: 1528 taagtctatcattttctccattttcagatagcttgtcagtttttggagt 1576
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 403 taagtctatcattttctccattttcagatagcttatcagtttttggagt 355
>gb|BE359276.1|BE359276 DG1_40_B04.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 324
Score = 492 bits (248), Expect = e-137
Identities = 299/316 (94%)
Strand = Plus / Minus
Query: 614 caccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatggagccaggca 673
||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||
Sbjct: 324 caccaggatcatggtcatgttatcgcacccatctccaccgatcgttgatggagccaggca 265
Query: 674 tctgtccagcactctctcgcacacggcagacaggctgctctccgtgtttatacgctcgtg 733
||||||||||||||| || ||||||||||| |||||||||||| ||||||||||||| ||
Sbjct: 264 tctgtccagcactctttcacacacggcagataggctgctctccatgtttatacgctcatg 205
Query: 734 gataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacatgctacaac 793
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gatgaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacatgctacaac 145
Query: 794 aacaaagtcgtcatcatcgcagagctccacgacgttgatatcaggattggccgtcacaat 853
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 144 aacaaagtcgtcatcatcgcagagctccacaacgttaatgtcaggattggctgtcacaat 85
Query: 854 ttgcttctcgggaggcaggaatttgttctgtttcaattccacgtctccaattgcccttga 913
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct: 84 ttgcttctcgggaggcaggaatttgttctgtttcaattccacatctccaattgctctaga 25
Query: 914 caagtttaaacttcca 929
|||||||| |||||||
Sbjct: 24 caagtttagacttcca 9
>gb|CD225315.1|CD225315 CCC1_39_A06.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_39_A06_A007 5', mRNA sequence
Length = 679
Score = 329 bits (166), Expect = 5e-088
Identities = 402/481 (83%)
Strand = Plus / Minus
Query: 1096 atgctacacacgctgtactcccacatgttggcccagcaaagtcagagtgaggtccctcct 1155
|||||||||| |||||||||||||| ||||||||| ||| |||||||| ||||||||||
Sbjct: 679 atgctacacaggctgtactcccacaatttggcccagtaaaatcagagtgtggtccctcct 620
Query: 1156 ctgaagcccaatcatcttgttgattatttgaatcactgccccttggagaccaaatcaatc 1215
| ||||||||||||| ||| || || ||||||||| | | || ||||||||||| |
Sbjct: 619 cgaaagcccaatcatcatgtctatcatntgaatcacttgctttaggggaccaaatcaacc 560
Query: 1216 cttctatcataccactaaacttgtttattttgtctccaagtgcagatagttctcgccaac 1275
||||||| || ||| |||||| ||||| || ||||||||||| ||||| ||||| |
Sbjct: 559 cttctattatgccagtaaactgatttatcttatctccaagtgcttggagttcccgccatc 500
Query: 1276 ctctctgtccttgcatcatttcatccattctgaagaaagctctatggacagcagcgccta 1335
|||| || || ||||||||||||||||||||||| ||||||| ||||||||||| || |
Sbjct: 499 ctctttgaccccgcatcatttcatccattctgaagtaagctctgtggacagcagcaccca 440
Query: 1336 ggtcaccagttgaataggcttcgcttttgaggacttgaccatgcagatattttgcacaga 1395
||||||||| || |||||| || || | ||| |||| | || ||||||||||||||||
Sbjct: 439 ggtcaccagctgcataggcctcactatggagaacttctctgtgtagatattttgcacaga 380
Query: 1396 atttggcaacgactcttcctccatgaccatcaaaaacaccaaagaatgctgtctcgctat 1455
|||||||||| ||| |||||||||| ||||||||||||||||||||||| || || | |
Sbjct: 379 atttggcaactacttttcctccatgtccatcaaaaacaccaaagaatgcagtgtcattgt 320
Query: 1456 caagatctagcaatgctgaatgagcatcttccatggttgctcgccatccttgcatagatg 1515
||||||||||||| || || |||||||||||||| ||||| ||||| ||||||||||| |
Sbjct: 319 caagatctagcaaagccgagtgagcatcttccatagttgcacgccacccttgcatagaag 260
Query: 1516 aaagacctaacttaagtctatcattttctccattttcagatagcttgtcagtttttggag 1575
|||| || || |||||| |||||||||| |||| ||| |||| ||| || ||||| ||||
Sbjct: 259 aaagtccgaatttaagtttatcattttccccatcttccgataccttctcggttttcggag 200
Query: 1576 t 1576
|
Sbjct: 199 t 199
>gb|CN129621.1|CN129621 RHOH1_36_A07.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_36_A07_A002 5', mRNA sequence
Length = 782
Score = 327 bits (165), Expect = 2e-087
Identities = 531/653 (81%)
Strand = Plus / Minus
Query: 606 ttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatgga 665
||||||||||||||||||||||||||||| || || || || || | || |||||||||
Sbjct: 685 ttgaactgcaccaggatcatggtcatgttatcacatccctcgccgcccatggttgatgga 626
Query: 666 gccaggcatctgtccagcactctctcgcacacggcagacaggctgctctccgtgtttata 725
||||||||||| || ||||||| || || || ||||| ||||| ||| |||||||||
Sbjct: 625 gccaggcatctatcaagcactcgttcacatactgcagaaaggctttcctctgtgtttata 566
Query: 726 cgctcgtggataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacat 785
|||| |||| ||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgctcacggatgaaatcaaccaactgttggcttgacatgcagtcccaaatgccatcacat 506
Query: 786 gctacaacaacaaagtcgtcatcatcgcagagctccacgacgttgatatcaggattggcc 845
|| | ||| | || ||||| ||||| || | ||| | | ||| || || || || ||
Sbjct: 505 gccaaaaccatgaattcgtcgtcatcacataactcaataatgtttatgtcggggttcgcg 446
Query: 846 gtcacaatttgcttctcgggaggcaggaatttgttctgtttcaattccacgtctccaatt 905
|||| ||||||||| || || | || ||| ||||| ||||| || |||| |||||||||
Sbjct: 445 gtcaaaatttgcttatcaggggacaagaacttgttttgtttaaactccatgtctccaata 386
Query: 906 gcccttgacaagtttaaacttccatttactcgtcccatatggatgaagccccctgctttc 965
|| |||||||| |||||| |||||||||| || ||||| || ||| | |||||||| |
Sbjct: 385 gctcttgacaaatttaaagttccatttacacgccccatttgaatgtaaccccctgcactt 326
Query: 966 attatcctttctctctcagctgcaagctctggtttgtggtccctcgataaattgtatgcc 1025
||||||||||||||| || | |||| |||||| ||||| || || ||||||||||||
Sbjct: 325 tgtatcctttctctctctgcctccagctgtggtttatggtctctagacaaattgtatgcc 266
Query: 1026 ttcccaccccttgaaataacacatcgggaatcaccagcatttgccacaacaagttgggtg 1085
| ||| |||||| || ||||| ||||| |||||||||||| ||||||||||||| |
Sbjct: 265 tggccattccttgagatgacacagcgggagtcaccagcatttcccacaacaagttgccta 206
Query: 1086 tttcttattaatgctacacacgctgtactcccacatgttggcccagcaaagtcagagtga 1145
||||| | |||||||||||| |||||||||||||| ||||||||| ||| ||||||||
Sbjct: 205 tttctgactaatgctacacaggctgtactcccacaatttggcccagtaaaatcagagtgt 146
Query: 1146 ggtccctcctctgaagcccaatcatcttgttgattatttgaatcactgccccttggagac 1205
||||||||||| ||||||||||||| ||| || |||||||||||| | | || |||
Sbjct: 145 ggtccctcctcgaaagcccaatcatcatgtctatcatttgaatcacttgctttaggggac 86
Query: 1206 caaatcaatccttctatcataccactaaacttgtttattttgtctccaagtgc 1258
|||||||| |||||||| || ||| |||||| ||||| || |||||||||||
Sbjct: 85 caaatcaacccttctattatgccagtaaactgatttatcttatctccaagtgc 33
>gb|CW478010.1|CW478010 fsbb001f235k11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235k11, DNA
sequence
Length = 733
Score = 280 bits (141), Expect = 4e-073
Identities = 156/161 (96%)
Strand = Plus / Minus
Query: 1150 cctcctctgaagcccaatcatcttgttgattatttgaatcactgccccttggagaccaaa 1209
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 623 cctcctctgaagcccaatcatcttgttgactattcgaatcactgccccttggagaccaaa 564
Query: 1210 tcaatccttctatcataccactaaacttgtttattttgtctccaagtgcagatagttctc 1269
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 563 tcaatccttctatcataccactaaacttgtttattttgtctccaagtgcagaaagttctc 504
Query: 1270 gccaacctctctgtccttgcatcatttcatccattctgaag 1310
||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 503 gccaacctctctgccctcgcatcatttcatccattctgaag 463
Score = 172 bits (87), Expect = 6e-041
Identities = 105/111 (94%)
Strand = Plus / Minus
Query: 1305 ctgaagaaagctctatggacagcagcgcctaggtcaccagttgaataggcttcgcttttg 1364
|||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||
Sbjct: 359 ctgaagaaagctctatggacagcagctcctaggtcacccgctgaataggcttcacttttg 300
Query: 1365 aggacttgaccatgcagatattttgcacagaatttggcaacgactcttcct 1415
|| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 299 agaacttgaccatgcagatattttgcacagaatttggcaaccactcttcct 249
Score = 129 bits (65), Expect = 9e-028
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgct 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 cctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgct 58
Query: 1473 gaatg 1477
|||||
Sbjct: 57 gaatg 53
>gb|CW478009.1|CW478009 fsbb001f235k11f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235k11, DNA
sequence
Length = 707
Score = 266 bits (134), Expect = 6e-069
Identities = 156/162 (96%), Gaps = 1/162 (0%)
Strand = Plus / Plus
Query: 1150 cctcctctgaagcccaatcatcttgttgattatttgaatcactgccccttggagaccaaa 1209
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 450 cctcctctgaagcccaatcatcttgttgactattcgaatcactgccccttggagaccaaa 509
Query: 1210 tcaatccttctatcataccactaaacttgtttattttgtctccaagtgcagatagttctc 1269
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 510 tcaatccttctatcataccactaaacttgtttattttgtctccaagtgcagaaagttctc 569
Query: 1270 -gccaacctctctgtccttgcatcatttcatccattctgaag 1310
||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 570 ggccaacctctctgccctcgcatcatttcatccattctgaag 611
>gb|BG102288.1|BG102288 RHIZ2_24_D11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 567
Score = 266 bits (134), Expect = 6e-069
Identities = 314/374 (83%)
Strand = Plus / Minus
Query: 1203 gaccaaatcaatccttctatcataccactaaacttgtttattttgtctccaagtgcagat 1262
||||||||||| |||||||| || ||| |||||| ||||| || |||||||||||
Sbjct: 560 gaccaaatcaacccttctattatgccagtaaactgatttatcttatctccaagtgcttgg 501
Query: 1263 agttctcgccaacctctctgtccttgcatcatttcatccattctgaagaaagctctatgg 1322
||||| ||||| ||||| || || ||||||||||||||||||||||| ||||||| |||
Sbjct: 500 agttcccgccatcctctttgaccccgcatcatttcatccattctgaagtaagctctgtgg 441
Query: 1323 acagcagcgcctaggtcaccagttgaataggcttcgcttttgaggacttgaccatgcaga 1382
|||||||| || |||||||||| || |||||| || || | ||| |||| | || |||
Sbjct: 440 acagcagcacccaggtcaccagctgcataggcctcactatggagaacttctctgtgtaga 381
Query: 1383 tattttgcacagaatttggcaacgactcttcctccatgaccatcaaaaacaccaaagaat 1442
||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct: 380 tattttgcacagaatttggcaactacttttcctccatgtccatcaaaaacaccaaagaat 321
Query: 1443 gctgtctcgctatcaagatctagcaatgctgaatgagcatcttccatggttgctcgccat 1502
|| || || | |||||||||||||| || || |||||||||||||| ||||| |||||
Sbjct: 320 gcagtgtcattgtcaagatctagcaaagccgagtgagcatcttccatagttgcacgccac 261
Query: 1503 ccttgcatagatgaaagacctaacttaagtctatcattttctccattttcagatagcttg 1562
||||||||||| ||||| || || |||||| |||||||||| |||| ||| |||| |||
Sbjct: 260 ccttgcatagaagaaagtccgaatttaagtttatcattttccccatcttccgataccttc 201
Query: 1563 tcagtttttggagt 1576
|| ||||| |||||
Sbjct: 200 tcggttttcggagt 187
>gb|CN152649.1|CN152649 WOUND1_83_H10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_83_H10_A002 3', mRNA sequence
Length = 756
Score = 246 bits (124), Expect = 5e-063
Identities = 196/220 (89%)
Strand = Plus / Minus
Query: 469 ccttatgaaagcaaatggttgcgccctggtgagtgccagccatgcttcactcctcagcaa 528
|||||||||||||||||||||| || | ||||||| || ||| | ||||||||||||| |
Sbjct: 221 ccttatgaaagcaaatggttgcacctttgtgagtgtcaaccacgtttcactcctcagcga 162
Query: 529 cacgactcttggcttcgtccacattgctggcagattgccctgctgcttcggccttcttgt 588
||||||||||| |||| ||| ||||| |||||||||| || ||| |||||||||| || |
Sbjct: 161 cacgactcttgacttcatccgcattgttggcagattgacccgctacttcggcctttttat 102
Query: 589 tccgatcgacaggttttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctc 648
|||||| ||| |||||||| | |||||||||||||||||||||||| |||||||| ||||
Sbjct: 101 tccgattgactggtttttttatctgcaccaggatcatggtcatgttatcgcacccatctc 42
Query: 649 cagcgatcgttgatggagccaggcatctgtccagcactct 688
|| |||||||||||||||||||||||||||||||||||||
Sbjct: 41 caccgatcgttgatggagccaggcatctgtccagcactct 2
Score = 95.6 bits (48), Expect = 1e-017
Identities = 95/108 (87%), Gaps = 2/108 (1%)
Strand = Plus / Minus
Query: 335 ggttgtgat-ctgaagatccaccactgcactaggcaatgccattgtccggggtaacttag 393
||||||||| |||||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct: 350 ggttgtgattctgaagatccaccactgcactaggcaatgccattatcggaggt-tcttat 292
Query: 394 gcaggatttgcatggcatgccacgtacagttgagatacgtacactgca 441
||||||| ||||| ||||||||| || |||||||||| ||||| ||||
Sbjct: 291 gcaggatgtgcatagcatgccacatatagttgagatatgtacagtgca 244
Score = 67.9 bits (34), Expect = 3e-009
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 151 ttgcacctaaccgccaccaaaacacactaacgtcacggttcattctcgcaacaaaaaact 210
||||||| ||| ||||||||| |||||| |||||||||||||||||||||| ||||||
Sbjct: 601 ttgcaccaaacaaccaccaaaaagcactaaggtcacggttcattctcgcaaca-aaaact 543
Query: 211 ggattt 216
||||||
Sbjct: 542 ggattt 537
Score = 46.1 bits (23), Expect = 0.010
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Minus
Query: 81 aactaaaatcagatccatccatatacttacaacccgaaa-tagcgagcgggcaattcagg 139
|||||||||||||| ||| ||||||||||| |||||| |||||||| || ||||||||
Sbjct: 711 aactaaaatcagattgatcg-tatacttacaatccgaaaatagcgagccggtaattcagg 653
Query: 140 ttc 142
|||
Sbjct: 652 ttc 650
>gb|CX612384.1|CX612384 GABR1_2_D09.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_2_D09_A002 3', mRNA sequence
Length = 814
Score = 240 bits (121), Expect = 3e-061
Identities = 193/217 (88%)
Strand = Plus / Minus
Query: 469 ccttatgaaagcaaatggttgcgccctggtgagtgccagccatgcttcactcctcagcaa 528
|||||||||||||||||||||| || | ||||||| || ||| | ||||||||||||| |
Sbjct: 217 ccttatgaaagcaaatggttgcacctttgtgagtgtcaaccacgtttcactcctcagcga 158
Query: 529 cacgactcttggcttcgtccacattgctggcagattgccctgctgcttcggccttcttgt 588
||||||||||| |||| ||| ||||| |||||||||| || ||| |||||||||| || |
Sbjct: 157 cacgactcttgacttcatccgcattgttggcagattgacccgctacttcggcctttttat 98
Query: 589 tccgatcgacaggttttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctc 648
|||||| ||| |||||||| | |||||||||||||||||||||||| |||||||| ||||
Sbjct: 97 tccgattgactggtttttttatctgcaccaggatcatggtcatgttatcgcacccatctc 38
Query: 649 cagcgatcgttgatggagccaggcatctgtccagcac 685
|| ||||||||||||||||||||||||||||||||||
Sbjct: 37 caccgatcgttgatggagccaggcatctgtccagcac 1
Score = 95.6 bits (48), Expect = 1e-017
Identities = 95/108 (87%), Gaps = 2/108 (1%)
Strand = Plus / Minus
Query: 335 ggttgtgat-ctgaagatccaccactgcactaggcaatgccattgtccggggtaacttag 393
||||||||| |||||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct: 346 ggttgtgattctgaagatccaccactgcactaggcaatgccattatcggaggt-tcttat 288
Query: 394 gcaggatttgcatggcatgccacgtacagttgagatacgtacactgca 441
||||||| ||||| ||||||||| || |||||||||| ||||| ||||
Sbjct: 287 gcaggatgtgcatagcatgccacatatagttgagatatgtacagtgca 240
Score = 67.9 bits (34), Expect = 3e-009
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 151 ttgcacctaaccgccaccaaaacacactaacgtcacggttcattctcgcaacaaaaaact 210
||||||| ||| ||||||||| |||||| |||||||||||||||||||||| ||||||
Sbjct: 597 ttgcaccaaacaaccaccaaaaagcactaaggtcacggttcattctcgcaaca-aaaact 539
Query: 211 ggattt 216
||||||
Sbjct: 538 ggattt 533
Score = 46.1 bits (23), Expect = 0.010
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Minus
Query: 81 aactaaaatcagatccatccatatacttacaacccgaaa-tagcgagcgggcaattcagg 139
|||||||||||||| ||| ||||||||||| |||||| |||||||| || ||||||||
Sbjct: 707 aactaaaatcagattgatcg-tatacttacaatccgaaaatagcgagccggtaattcagg 649
Query: 140 ttc 142
|||
Sbjct: 648 ttc 646
>gb|BG102069.1|BG102069 RHIZ2_24_D11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 686
Score = 186 bits (94), Expect = 4e-045
Identities = 306/377 (81%)
Strand = Plus / Minus
Query: 606 ttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatgga 665
||||||||||||||||||||||||||||| || || || || || | || |||||||||
Sbjct: 379 ttgaactgcaccaggatcatggtcatgttatcacatccctcgccgcccatggttgatgga 320
Query: 666 gccaggcatctgtccagcactctctcgcacacggcagacaggctgctctccgtgtttata 725
||||||||||| || |||||||| || || || ||||| ||||| ||| |||||||||
Sbjct: 319 gccaggcatctatcaagcactctttcacatactgcagaaaggctttcctctgtgtttata 260
Query: 726 cgctcgtggataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacat 785
|||| ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgctcatggatgaaatcaaccaactgttggcttgacatgcagtcccaaatgccatcacat 200
Query: 786 gctacaacaacaaagtcgtcatcatcgcagagctccacgacgttgatatcaggattggcc 845
|| | ||| | || ||||| ||||| || | ||| | | ||| || || || || ||
Sbjct: 199 gccaaaaccatgaattcgtcgtcatcacataactcaataatgtttatgtcggggttcgcg 140
Query: 846 gtcacaatttgcttctcgggaggcaggaatttgttctgtttcaattccacgtctccaatt 905
|||| ||||||||| || || | || ||| ||||| ||||| || |||| |||||||||
Sbjct: 139 gtcaaaatttgcttatcaggggacaagaacttgttttgtttaaactccatgtctccaata 80
Query: 906 gcccttgacaagtttaaacttccatttactcgtcccatatggatgaagccccctgctttc 965
|| |||||||| |||||| |||||||||| || ||||| || ||| | |||||||| |
Sbjct: 79 gctcttgacaaatttaaagttccatttacacgccccatttgaatgtaaccccctgcactn 20
Query: 966 attatcctttctctctc 982
|||||||||||||||
Sbjct: 19 tgtatcctttctctctc 3
>gb|CN129535.1|CN129535 RHOH1_36_A07.b3_A002 Acid- and alkaline-treated roots Sorghum bicolor
cDNA clone RHOH1_36_A07_A002 3', mRNA sequence
Length = 787
Score = 186 bits (94), Expect = 4e-045
Identities = 339/421 (80%)
Strand = Plus / Minus
Query: 606 ttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatgga 665
||||||||||||||||||||||||||||| || || || || || | || |||||||||
Sbjct: 433 ttgaactgcaccaggatcatggtcatgttatcacatccctcgccgcccatggttgatgga 374
Query: 666 gccaggcatctgtccagcactctctcgcacacggcagacaggctgctctccgtgtttata 725
||||||||||| || ||||||| || || || ||||| ||||| ||| |||||||||
Sbjct: 373 gccaggcatctatcaagcactcgttcacatactgcagaaaggctttcctctgtgtttata 314
Query: 726 cgctcgtggataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacat 785
|||| |||| ||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgctcacggatgaaatcaaccaactgttggcttgacatgcagtcccaaatgccatcacat 254
Query: 786 gctacaacaacaaagtcgtcatcatcgcagagctccacgacgttgatatcaggattggcc 845
|| | ||| | || ||||| ||||| || | ||| | | ||| || || || || ||
Sbjct: 253 gccaaaaccatgaattcgtcgtcatcacataactcaataatgtttatgtcggggttcgcg 194
Query: 846 gtcacaatttgcttctcgggaggcaggaatttgttctgtttcaattccacgtctccaatt 905
|||| ||||||||| || || | || ||| ||||| ||||| || |||| |||||||||
Sbjct: 193 gtcaaaatttgcttatcaggggacaagaacttgttttgtttaaactccatgtctccaata 134
Query: 906 gcccttgacaagtttaaacttccatttactcgtcccatatggatgaagccccctgctttc 965
|| |||||||| |||||| |||||||||| || ||||| || ||| | |||||||| |
Sbjct: 133 gctcttgacaaatttaaagttccatttacacgccccatttgaatgtaaccccctgcactt 74
Query: 966 attatcctttctctctcagctgcaagctctggtttgtggtccctcgataaattgtatgcc 1025
||||||||||||||| || | ||||||||||| ||||| || || |||||||||||
Sbjct: 73 tgtatcctttctctctctgcctccagctctggtttatggtctctagacnaattgtatgcc 14
Query: 1026 t 1026
|
Sbjct: 13 t 13
>gb|CX607480.1|CX607480 ANR1_29_A08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_29_A08_A002 3', mRNA sequence
Length = 716
Score = 178 bits (90), Expect = 1e-042
Identities = 168/194 (86%)
Strand = Plus / Minus
Query: 469 ccttatgaaagcaaatggttgcgccctggtgagtgccagccatgcttcactcctcagcaa 528
|||||||||||||||||||||| || | ||||||| || ||| | ||||||||||||| |
Sbjct: 194 ccttatgaaagcaaatggttgcacctttgtgagtgtcaaccacgtttcactcctcagcga 135
Query: 529 cacgactcttggcttcgtccacattgctggcagattgccctgctgcttcggccttcttgt 588
||| ||||||| |||| ||| ||||| |||||||||| || ||| |||||||||| || |
Sbjct: 134 cacaactcttgacttcatccgcattgttggcagattgacccgctacttcggcctttttat 75
Query: 589 tccgatcgacaggttttttgaactgcaccaggatcatggtcatgttgtcgcacccgtctc 648
|||||| ||| |||||||| | ||||||||||||||||||||||| |||||||| ||||
Sbjct: 74 tccgattgactggtttttttatctgcaccaggatcatggtcatgtcatcgcacccatctc 15
Query: 649 cagcgatcgttgat 662
|| |||||||||||
Sbjct: 14 caccgatcgttgat 1
Score = 95.6 bits (48), Expect = 1e-017
Identities = 95/108 (87%), Gaps = 2/108 (1%)
Strand = Plus / Minus
Query: 335 ggttgtgat-ctgaagatccaccactgcactaggcaatgccattgtccggggtaacttag 393
||||||||| |||||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct: 323 ggttgtgattctgaagatccaccactgcactaggcaatgccattatcggaggt-tcttat 265
Query: 394 gcaggatttgcatggcatgccacgtacagttgagatacgtacactgca 441
||||||| ||||| ||||||||| || |||||||||| ||||| ||||
Sbjct: 264 gcaggatgtgcatagcatgccacatatagttgagatatgtacagtgca 217
Score = 67.9 bits (34), Expect = 3e-009
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 151 ttgcacctaaccgccaccaaaacacactaacgtcacggttcattctcgcaacaaaaaact 210
||||||| ||| ||||||||| |||||| ||||||||||||||||||||| |||||||
Sbjct: 574 ttgcaccaaacaaccaccaaaaagcactaaggtcacggttcattctcgcaac-aaaaact 516
Query: 211 ggattt 216
||||||
Sbjct: 515 ggattt 510
Score = 46.1 bits (23), Expect = 0.010
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Minus
Query: 81 aactaaaatcagatccatccatatacttacaacccgaaa-tagcgagcgggcaattcagg 139
|||||||||||||| ||| ||||||||||| |||||| |||||||| || ||||||||
Sbjct: 684 aactaaaatcagattgatcg-tatacttacaatccgaaaatagcgagccggtaattcagg 626
Query: 140 ttc 142
|||
Sbjct: 625 ttc 623
>gb|CW189649.1|CW189649 104_611_11174075_116_36745_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174075, DNA
sequence
Length = 753
Score = 172 bits (87), Expect = 6e-041
Identities = 105/111 (94%)
Strand = Plus / Plus
Query: 1305 ctgaagaaagctctatggacagcagcgcctaggtcaccagttgaataggcttcgcttttg 1364
|||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||
Sbjct: 98 ctgaagaaagctctatggacagcagctcctaggtcacccgctgaataggcttcacttttg 157
Query: 1365 aggacttgaccatgcagatattttgcacagaatttggcaacgactcttcct 1415
|| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 158 agaacttgaccatgcagatattttgcacagaatttggcaaccactcttcct 208
Score = 129 bits (65), Expect = 9e-028
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgct 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgct 399
Query: 1473 gaatg 1477
|||||
Sbjct: 400 gaatg 404
>gb|CW189650.1|CW189650 104_611_11174075_148_36746_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174075, DNA
sequence
Length = 687
Score = 172 bits (87), Expect = 6e-041
Identities = 96/99 (96%)
Strand = Plus / Minus
Query: 1478 agcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtctatc 1537
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 486 agcatcttccatggttgctcgccatccttgcatagatgaaagaccaaatttaagtctatc 427
Query: 1538 attttctccattttcagatagcttgtcagtttttggagt 1576
|||||||||||||||||||||||| ||||||||||||||
Sbjct: 426 attttctccattttcagatagcttatcagtttttggagt 388
>gb|CW276053.1|CW276053 104_749_11405284_148_35391_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405284, DNA
sequence
Length = 652
Score = 172 bits (87), Expect = 6e-041
Identities = 96/99 (96%)
Strand = Plus / Plus
Query: 1478 agcatcttccatggttgctcgccatccttgcatagatgaaagacctaacttaagtctatc 1537
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 271 agcatcttccatggttgctcgccatccttgcatagatgaaagaccaaatttaagtctatc 330
Query: 1538 attttctccattttcagatagcttgtcagtttttggagt 1576
|||||||||||||||||||||||| ||||||||||||||
Sbjct: 331 attttctccattttcagatagcttatcagtttttggagt 369
>gb|CW433737.1|CW433737 fsbb001f149b13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f149b13, DNA
sequence
Length = 716
Score = 172 bits (87), Expect = 6e-041
Identities = 105/111 (94%)
Strand = Plus / Plus
Query: 1305 ctgaagaaagctctatggacagcagcgcctaggtcaccagttgaataggcttcgcttttg 1364
|||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||
Sbjct: 15 ctgaagaaagctctatggacagcagctcctaggtcacccgctgaataggcttcacttttg 74
Query: 1365 aggacttgaccatgcagatattttgcacagaatttggcaacgactcttcct 1415
|| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 75 agaacttgaccatgcagatattttgcacagaatttggcaaccactcttcct 125
Score = 129 bits (65), Expect = 9e-028
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgct 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cctccatgaccatcaaaaacaccaaagaatgctgtctcgctatcaagatctagcaatgct 316
Query: 1473 gaatg 1477
|||||
Sbjct: 317 gaatg 321
>gb|CN131133.1|CN131133 RHOH1_46_C11.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_46_C11_A002 3', mRNA sequence
Length = 779
Score = 163 bits (82), Expect = 6e-038
Identities = 145/166 (87%)
Strand = Plus / Minus
Query: 469 ccttatgaaagcaaatggttgcgccctggtgagtgccagccatgcttcactcctcagcaa 528
|||||||||||||||||||||| || | ||||||| || ||| | ||||||||||||| |
Sbjct: 168 ccttatgaaagcaaatggttgcacctttgtgagtgtcaaccacgtttcactcctcagcga 109
Query: 529 cacgactcttggcttcgtccacattgctggcagattgccctgctgcttcggccttcttgt 588
||||||||||| |||| ||| ||||| |||||||||| || ||| |||||||||| || |
Sbjct: 108 cacgactcttgacttcatccgcattgttggcagattgacccgctacttcggcctttttat 49
Query: 589 tccgatcgacaggttttttgaactgcaccaggatcatggtcatgtt 634
|||||| ||| |||||||| | ||||||||||||||||||||||||
Sbjct: 48 tccgattgactggtttttttatctgcaccaggatcatggtcatgtt 3
Score = 95.6 bits (48), Expect = 1e-017
Identities = 95/108 (87%), Gaps = 2/108 (1%)
Strand = Plus / Minus
Query: 335 ggttgtgat-ctgaagatccaccactgcactaggcaatgccattgtccggggtaacttag 393
||||||||| |||||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct: 297 ggttgtgattctgaagatccaccactgcactaggcaatgccattatcggaggt-tcttat 239
Query: 394 gcaggatttgcatggcatgccacgtacagttgagatacgtacactgca 441
||||||| ||||| ||||||||| || |||||||||| ||||| ||||
Sbjct: 238 gcaggatgtgcatagcatgccacatatagttgagatatgtacagtgca 191
Score = 67.9 bits (34), Expect = 3e-009
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 151 ttgcacctaaccgccaccaaaacacactaacgtcacggttcattctcgcaacaaaaaact 210
||||||| ||| ||||||||| |||||| ||||||||||||||||||||| |||||||
Sbjct: 548 ttgcaccaaacaaccaccaaaaagcactaaggtcacggttcattctcgcaac-aaaaact 490
Query: 211 ggattt 216
||||||
Sbjct: 489 ggattt 484
Score = 46.1 bits (23), Expect = 0.010
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Minus
Query: 81 aactaaaatcagatccatccatatacttacaacccgaaa-tagcgagcgggcaattcagg 139
|||||||||||||| ||| ||||||||||| |||||| |||||||| || ||||||||
Sbjct: 658 aactaaaatcagattgatcg-tatacttacaatccgaaaatagcgagccggtaattcagg 600
Query: 140 ttc 142
|||
Sbjct: 599 ttc 597
>gb|CD225212.1|CD225212 CCC1_39_A06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_39_A06_A007 3', mRNA sequence
Length = 599
Score = 147 bits (74), Expect = 4e-033
Identities = 155/182 (85%)
Strand = Plus / Minus
Query: 606 ttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatgga 665
||||||||||||||||||||||||||||| || || || || || | || |||||||||
Sbjct: 255 ttgaactgcaccaggatcatggtcatgttatcacatccctcgccgcccatggttgatgga 196
Query: 666 gccaggcatctgtccagcactctctcgcacacggcagacaggctgctctccgtgtttata 725
||||||||||| || ||||||| || || || ||||| ||||| ||| |||||||||
Sbjct: 195 gccaggcatctatcaagcactcgttcacatactgcagaaaggctttcctctgtgtttata 136
Query: 726 cgctcgtggataaaatccaccagctgttggcttgacatgcagtcccaaatgccatcacat 785
|||| |||| ||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 135 tgctcacggatgaaatcaaccaactgttggcttgacatgcagtcccaaatgccatcacat 76
Query: 786 gc 787
||
Sbjct: 75 gc 74
>gb|CF431957.1|CF431957 NIT1_16_E06.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_16_E06_A002 3', mRNA sequence
Length = 505
Score = 101 bits (51), Expect = 2e-019
Identities = 132/159 (83%)
Strand = Plus / Minus
Query: 606 ttgaactgcaccaggatcatggtcatgttgtcgcacccgtctccagcgatcgttgatgga 665
||||||||||||||||||||||||||||| || || || || || | || |||||||||
Sbjct: 159 ttgaactgcaccaggatcatggtcatgttatcacatccctcgccgcccatggttgatgga 100
Query: 666 gccaggcatctgtccagcactctctcgcacacggcagacaggctgctctccgtgtttata 725
||||||||||| || ||||||| || || || ||||| ||||| ||| |||||||||
Sbjct: 99 gccaggcatctatcaagcactcgttcacatactgcagaaaggctttcctctgtgtttata 40
Query: 726 cgctcgtggataaaatccaccagctgttggcttgacatg 764
|||| |||| ||||| |||| ||||||||||||||||
Sbjct: 39 tgctcacggatgaaatcaaccaactgttggcttgacatg 1
>gb|CB925296.1|CB925296 ABA1_32_F06.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_32_F06_A012 3', mRNA sequence
Length = 642
Score = 97.6 bits (49), Expect = 3e-018
Identities = 85/97 (87%)
Strand = Plus / Minus
Query: 469 ccttatgaaagcaaatggttgcgccctggtgagtgccagccatgcttcactcctcagcaa 528
|||||||||||||||||||||| || | ||||||| || ||| | ||||||||||||| |
Sbjct: 107 ccttatgaaagcaaatggttgcacctttgtgagtgtcaaccacgtttcactcctcagcga 48
Query: 529 cacgactcttggcttcgtccacattgctggcagattg 565
||||||||||| |||| ||| ||||| ||||||||||
Sbjct: 47 cacgactcttgacttcatccgcattgttggcagattg 11
Score = 95.6 bits (48), Expect = 1e-017
Identities = 95/108 (87%), Gaps = 2/108 (1%)
Strand = Plus / Minus
Query: 335 ggttgtgat-ctgaagatccaccactgcactaggcaatgccattgtccggggtaacttag 393
||||||||| |||||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct: 236 ggttgtgattctgaagatccaccactgcactaggcaatgccattatcggaggt-tcttat 178
Query: 394 gcaggatttgcatggcatgccacgtacagttgagatacgtacactgca 441
||||||| ||||| ||||||||| || |||||||||| ||||| ||||
Sbjct: 177 gcaggatgtgcatagcatgccacatatagttgagatatgtacagtgca 130
Score = 67.9 bits (34), Expect = 3e-009
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 151 ttgcacctaaccgccaccaaaacacactaacgtcacggttcattctcgcaacaaaaaact 210
||||||| ||| ||||||||| |||||| ||||||||||||||||||||| |||||||
Sbjct: 487 ttgcaccaaacaaccaccaaaaagcactaaggtcacggttcattctcgcaac-aaaaact 429
Query: 211 ggattt 216
||||||
Sbjct: 428 ggattt 423
Score = 46.1 bits (23), Expect = 0.010
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Minus
Query: 81 aactaaaatcagatccatccatatacttacaacccgaaa-tagcgagcgggcaattcagg 139
|||||||||||||| ||| ||||||||||| |||||| |||||||| || ||||||||
Sbjct: 597 aactaaaatcagattgatcg-tatacttacaatccgaaaatagcgagccggtaattcagg 539
Query: 140 ttc 142
|||
Sbjct: 538 ttc 536
>gb|BG050491.1|BG050491 FM1_70_A08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 514
Score = 95.6 bits (48), Expect = 1e-017
Identities = 104/120 (86%), Gaps = 2/120 (1%)
Strand = Plus / Minus
Query: 335 ggttgtgat-ctgaagatccaccactgcactaggcaatgccattgtccggggtaacttag 393
||||||||| |||||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct: 184 ggttgtgattctgaagatccaccactgcactaggcaatgccattatctgaggt-tcttat 126
Query: 394 gcaggatttgcatggcatgccacgtacagttgagatacgtacactgcaggtttcttcgtt 453
||||||| ||||| ||||| ||| || |||||||||| ||||| |||| ||||||||||
Sbjct: 125 gcaggatgtgcatagcatgtcacatatagttgagatatgtacagtgcacatttcttcgtt 66
Score = 63.9 bits (32), Expect = 4e-008
Identities = 45/48 (93%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 169 aaaacacactaacgtcacggttcattctcgcaacaaaaaactggattt 216
|||| ||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 417 aaaaaacactaaggtcacggttcattctcgcaac-aaaaactggattt 371
Score = 46.1 bits (23), Expect = 0.010
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 469 ccttatgaaagcaaatggttgcgccctggtgagtgccagccatgcttcactcctc 523
|||||||||||||| ||||||| || | ||||||| || ||| | ||||||||||
Sbjct: 55 ccttatgaaagcaactggttgcacctttgtgagtgtcaaccacgtttcactcctc 1
>gb|CN131317.1|CN131317 RHOH1_47_E09.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_47_E09_A002 3', mRNA sequence
Length = 636
Score = 95.6 bits (48), Expect = 1e-017
Identities = 95/108 (87%), Gaps = 2/108 (1%)
Strand = Plus / Minus
Query: 335 ggttgtgat-ctgaagatccaccactgcactaggcaatgccattgtccggggtaacttag 393
||||||||| |||||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct: 195 ggttgtgattctgaagatccaccactgcactaggcaatgccattatcggaggt-tcttat 137
Query: 394 gcaggatttgcatggcatgccacgtacagttgagatacgtacactgca 441
||||||| ||||| ||||||||| || |||||||||| ||||| ||||
Sbjct: 136 gcaggatgtgcatagcatgccacatatagttgagatatgtacagtgca 89
Score = 67.9 bits (34), Expect = 3e-009
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 151 ttgcacctaaccgccaccaaaacacactaacgtcacggttcattctcgcaacaaaaaact 210
||||||| ||| ||||||||| |||||| ||||||||||||||||||||| |||||||
Sbjct: 446 ttgcaccaaacaaccaccaaaaagcactaaggtcacggttcattctcgcaac-aaaaact 388
Query: 211 ggattt 216
||||||
Sbjct: 387 ggattt 382
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 469 ccttatgaaagcaaatggttgcgccctggtgagtgccagccatgcttcactcctcagcaa 528
|||||||||||||||||||||| || | ||||||| || ||| | ||||||||||||| |
Sbjct: 65 ccttatgaaagcaaatggttgcacctttgtgagtgtcaaccacgtttcactcctcagcga 6
Query: 529 cacga 533
|||||
Sbjct: 5 cacga 1
Score = 46.1 bits (23), Expect = 0.010
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Minus
Query: 81 aactaaaatcagatccatccatatacttacaacccgaaa-tagcgagcgggcaattcagg 139
|||||||||||||| ||| ||||||||||| |||||| |||||||| || ||||||||
Sbjct: 556 aactaaaatcagattgatcg-tatacttacaatccgaaaatagcgagccggtaattcagg 498
Query: 140 ttc 142
|||
Sbjct: 497 ttc 495
>gb|CD209819.1|CD209819 HS1_55_B02.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_55_B02_A012 3', mRNA sequence
Length = 580
Score = 79.8 bits (40), Expect = 7e-013
Identities = 81/92 (88%), Gaps = 2/92 (2%)
Strand = Plus / Minus
Query: 335 ggttgtgat-ctgaagatccaccactgcactaggcaatgccattgtccggggtaacttag 393
||||||||| |||||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct: 91 ggttgtgattctgaagatccaccactgcactaggcaatgccattatcggaggt-tcttat 33
Query: 394 gcaggatttgcatggcatgccacgtacagttg 425
||||||| ||||| ||||||||| || |||||
Sbjct: 32 gcaggatgtgcatagcatgccacatatagttg 1
Score = 67.9 bits (34), Expect = 3e-009
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 151 ttgcacctaaccgccaccaaaacacactaacgtcacggttcattctcgcaacaaaaaact 210
||||||| ||| ||||||||| |||||| ||||||||||||||||||||| |||||||
Sbjct: 342 ttgcaccaaacaaccaccaaaaagcactaaggtcacggttcattctcgcaac-aaaaact 284
Query: 211 ggattt 216
||||||
Sbjct: 283 ggattt 278
Score = 46.1 bits (23), Expect = 0.010
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Minus
Query: 81 aactaaaatcagatccatccatatacttacaacccgaaa-tagcgagcgggcaattcagg 139
|||||||||||||| ||| ||||||||||| |||||| |||||||| || ||||||||
Sbjct: 452 aactaaaatcagattgatcg-tatacttacaatccgaaaatagcgagccggtaattcagg 394
Query: 140 ttc 142
|||
Sbjct: 393 ttc 391
>gb|DN551715.1|DN551715 pSPR-L_H08_C233 pSPR Sorghum propinquum cDNA, mRNA sequence
Length = 524
Score = 63.9 bits (32), Expect = 4e-008
Identities = 45/48 (93%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 169 aaaacacactaacgtcacggttcattctcgcaacaaaaaactggattt 216
|||| ||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 287 aaaaaacactaaggtcacggttcattctcgcaac-aaaaactggattt 333
Score = 46.1 bits (23), Expect = 0.010
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 81 aactaaaatcagatccatccatatacttacaacccgaaa-tagcgagcgggcaattcagg 139
|||||||||||||| ||| ||||||||||| |||||| |||||||| || ||||||||
Sbjct: 158 aactaaaatcagattgatcg-tatacttacaatccgaaaatagcgagccggtaattcagg 216
Query: 140 ttc 142
|||
Sbjct: 217 ttc 219
>gb|BI212016.1|BI212016 IP1_63_D08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 565
Score = 50.1 bits (25), Expect = 6e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 756 cttgacatgcagtcccaaatgccatcacatgctacaacaacaaagtcgtcatc 808
||||||||||| |||||||| |||||||| |||| ||||| || ||||||||
Sbjct: 104 cttgacatgcaatcccaaattccatcacaagctaaaacaatgaattcgtcatc 52
>gb|CD207263.1|CD207263 HS1_62_H08.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_62_H08_A012 5', mRNA sequence
Length = 564
Score = 50.1 bits (25), Expect = 6e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 756 cttgacatgcagtcccaaatgccatcacatgctacaacaacaaagtcgtcatc 808
||||||||||| |||||||| |||||||| |||| ||||| || ||||||||
Sbjct: 494 cttgacatgcaatcccaaattccatcacaagctaaaacaatgaattcgtcatc 546
>gb|CD424906.1|CD424906 SA1_9_F07.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_9_F07_A002 3', mRNA sequence
Length = 672
Score = 50.1 bits (25), Expect = 6e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 756 cttgacatgcagtcccaaatgccatcacatgctacaacaacaaagtcgtcatc 808
||||||||||| |||||||| |||||||| |||| ||||| || ||||||||
Sbjct: 184 cttgacatgcaatcccaaattccatcacaagctaaaacaatgaattcgtcatc 132
>gb|CF488488.1|CF488488 POL1_50_G05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_50_G05_A002 3', mRNA sequence
Length = 720
Score = 50.1 bits (25), Expect = 6e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 756 cttgacatgcagtcccaaatgccatcacatgctacaacaacaaagtcgtcatc 808
||||||||||| |||||||| |||||||| |||| ||||| || ||||||||
Sbjct: 258 cttgacatgcaatcccaaattccatcacaagctaaaacaatgaattcgtcatc 206
>gb|CX607368.1|CX607368 ANR1_8_F01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_8_F01_A002 3', mRNA sequence
Length = 805
Score = 50.1 bits (25), Expect = 6e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 756 cttgacatgcagtcccaaatgccatcacatgctacaacaacaaagtcgtcatc 808
||||||||||| |||||||| |||||||| |||| ||||| || ||||||||
Sbjct: 340 cttgacatgcaatcccaaattccatcacaagctaaaacaatgaattcgtcatc 288
>gb|CX616272.1|CX616272 GABR1_27_A03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_27_A03_A002 3', mRNA sequence
Length = 698
Score = 50.1 bits (25), Expect = 6e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 756 cttgacatgcagtcccaaatgccatcacatgctacaacaacaaagtcgtcatc 808
||||||||||| |||||||| |||||||| |||| ||||| || ||||||||
Sbjct: 234 cttgacatgcaatcccaaattccatcacaagctaaaacaatgaattcgtcatc 182
>gb|DV162795.1|DV162795 P1-M15 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 282
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 51 gtacctgcccgggcggccgctcgaa 27
>gb|DV162820.1|DV162820 P3-G6 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 223
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 100 gtacctgcccgggcggccgctcgaa 124
>gb|DV162819.2|DV162819 P5-B11 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 172
Score = 50.1 bits (25), Expect = 6e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1575 gtacctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||||
Sbjct: 2 gtacctgcccgggcggccgctcgaa 26
>gb|BI074755.1|BI074755 IP1_15_D09.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 333
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1412 tcctccatgaccatcaaaaacaccaaagaatg 1443
||||||||| |||||| |||||||||||||||
Sbjct: 277 tcctccatggccatcataaacaccaaagaatg 246
>gb|BI074756.1|BI074756 IP1_15_D10.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 513
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1412 tcctccatgaccatcaaaaacaccaaagaatg 1443
||||||||| |||||| |||||||||||||||
Sbjct: 277 tcctccatggccatcataaacaccaaagaatg 246
>gb|BZ422925.1|BZ422925 hz32b08.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone hz32b08 5', DNA sequence
Length = 719
Score = 46.1 bits (23), Expect = 0.010
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatg 1443
|||||||| |||||| |||||||||||||||
Sbjct: 635 cctccatggccatcataaacaccaaagaatg 605
>gb|BZ691025.1|BZ691025 SP__Ba0001C15.f SP__Ba Sorghum propinquum genomic clone SP__Ba0001C15
5', DNA sequence
Length = 731
Score = 46.1 bits (23), Expect = 0.010
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatg 1443
|||||||| |||||| |||||||||||||||
Sbjct: 659 cctccatggccatcataaacaccaaagaatg 689
>gb|CW122018.1|CW122018 104_500_11110323_116_34665_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11110323, DNA
sequence
Length = 665
Score = 46.1 bits (23), Expect = 0.010
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatg 1443
|||||||| |||||| |||||||||||||||
Sbjct: 137 cctccatggccatcataaacaccaaagaatg 167
>gb|CW784589.1|CW784589 SP__Ba0001C15.f SP__Ba Sorghum propinquum genomic clone SP__Ba0001C15
5', DNA sequence
Length = 740
Score = 46.1 bits (23), Expect = 0.010
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1413 cctccatgaccatcaaaaacaccaaagaatg 1443
|||||||| |||||| |||||||||||||||
Sbjct: 666 cctccatggccatcataaacaccaaagaatg 696
>gb|DR831552.2|DR831552 MT106 Sorghum bicolor greenbug-responsive cDNA library Sorghum
bicolor cDNA 5', mRNA sequence
Length = 253
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1577 acctgcccgggcggccgctcgaa 1599
|||||||||||||||||||||||
Sbjct: 197 acctgcccgggcggccgctcgaa 219
>gb|CW147614.1|CW147614 104_540_11139598_148_34995_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11139598, DNA
sequence
Length = 664
Score = 44.1 bits (22), Expect = 0.040
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 292 cgagggctggagagtggagatg 313
||||||||||||||||||||||
Sbjct: 284 cgagggctggagagtggagatg 305
>gb|CW201784.1|CW201784 104_627_11184750_148_37111_019 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184750, DNA
sequence
Length = 641
Score = 44.1 bits (22), Expect = 0.040
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 292 cgagggctggagagtggagatg 313
||||||||||||||||||||||
Sbjct: 366 cgagggctggagagtggagatg 345
>gb|CW382673.1|CW382673 fsbb001f064m12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f064m12, DNA
sequence
Length = 612
Score = 44.1 bits (22), Expect = 0.040
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 292 cgagggctggagagtggagatg 313
||||||||||||||||||||||
Sbjct: 404 cgagggctggagagtggagatg 383
>gb|BE359413.1|BE359413 DG1_40_B04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 250
Score = 44.1 bits (22), Expect = 0.040
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 335 ggttgtgat-ctgaagatccaccactgcactaggcaat 371
||||||||| ||||| ||||||| ||||||||||||||
Sbjct: 38 ggttgtgattctgaaaatccacccctgcactaggcaat 1
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 404,211
Number of Sequences: 832831
Number of extensions: 404211
Number of successful extensions: 107999
Number of sequences better than 0.5: 56
Number of HSP's better than 0.5 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107825
Number of HSP's gapped (non-prelim): 136
length of query: 1599
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1579
effective length of database: 474,703,049
effective search space: 749556114371
effective search space used: 749556114371
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)