BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2655972.2.1
(666 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW139829.1|CW139829 104_530_11135453_116_34914_029 Sorgh... 555 e-156
gb|CW186992.1|CW186992 104_605_11166856_148_36719_062 Sorgh... 555 e-156
gb|CW156393.1|CW156393 104_559_11146661_116_36371_025 Sorgh... 509 e-143
gb|CD230946.1|CD230946 SS1_7_E05.b1_A012 Salt-stressed seed... 323 1e-086
gb|CW139830.1|CW139830 104_530_11135453_148_34918_029 Sorgh... 214 8e-054
gb|CW156394.1|CW156394 104_559_11146661_148_36372_025 Sorgh... 192 3e-047
gb|CW451609.1|CW451609 fsbb001f191m02f0 Sorghum methylation... 153 2e-035
gb|CW263419.1|CW263419 104_731_11230685_148_35217_021 Sorgh... 40 0.25
>gb|CW139829.1|CW139829 104_530_11135453_116_34914_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135453, DNA
sequence
Length = 637
Score = 555 bits (280), Expect = e-156
Identities = 389/423 (91%), Gaps = 2/423 (0%)
Strand = Plus / Minus
Query: 1 gaaagggctgc-caggctgcagctgaaccancagcc-cggttctgttcttttttggctgt 58
||||||||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||||||
Sbjct: 541 gaaagggctgcacaggctgcagcagagccaacagccgcggttatgttcttctttggctgt 482
Query: 59 agaaaccaagaaaacgattttctatacaaggatttctggctaactcatgcgcaggatgag 118
||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 481 agaaaccaagataacgattttctatacaaggatttctggttaactcatgcccaggatgag 422
Query: 119 ggggtgttgtcctcgaaaaggggcggtggtttcttcgtcgctttttcccgggatcagccg 178
||||||||||||||||||| ||| |||||||| || || ||||||||||||||||||||
Sbjct: 421 ggggtgttgtcctcgaaaaagggtggtggtttatttgttgctttttcccgggatcagcct 362
Query: 179 caaaaggtctacgtgcaacccaagataaaggaacagagttcaagactgtggaacttatta 238
||||||||||| ||||||| |||||||||||||| ||||||||| ||||||||||||||
Sbjct: 361 caaaaggtctatgtgcaacataagataaaggaacatagttcaagagtgtggaacttatta 302
Query: 239 ctgtccgatgcagtgatctacattgcaggctcttcgacgaaaatgcctgccgatgttaca 298
|||||||||||||| || |||||||| |||||||||||||||||||| || |||||||||
Sbjct: 301 ctgtccgatgcagttatttacattgcgggctcttcgacgaaaatgcccgctgatgttaca 242
Query: 299 gctgcgctagaggaggttatttgtaaagaaggtggtgtcaagcaagcggatgcttcgaaa 358
||||| || |||||||||||||||||||||||||||||||| |||| ||||||||| |||
Sbjct: 241 gctgcactggaggaggttatttgtaaagaaggtggtgtcaaacaagaggatgcttcaaaa 182
Query: 359 tggctcagggatctagaaagggctggtagacttaacatcgagacatggtcatagttgtga 418
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 181 tggctcagggatcttgaaagagctggtagacttaacatcgagacttggtcatagttgtga 122
Query: 419 tgg 421
|||
Sbjct: 121 tgg 119
Score = 52.0 bits (26), Expect = 7e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 478 tgtaaatcaaaggcattggaaatgtggaaa 507
|||||||||||||||||| |||||||||||
Sbjct: 37 tgtaaatcaaaggcattgaaaatgtggaaa 8
>gb|CW186992.1|CW186992 104_605_11166856_148_36719_062 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11166856, DNA
sequence
Length = 696
Score = 555 bits (280), Expect = e-156
Identities = 389/423 (91%), Gaps = 2/423 (0%)
Strand = Plus / Minus
Query: 1 gaaagggctgc-caggctgcagctgaaccancagcc-cggttctgttcttttttggctgt 58
||||||||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||||||
Sbjct: 431 gaaagggctgcacaggctgcagcagagccaacagccgcggttatgttcttctttggctgt 372
Query: 59 agaaaccaagaaaacgattttctatacaaggatttctggctaactcatgcgcaggatgag 118
||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 371 agaaaccaagataacgattttctatacaaggatttctggttaactcatgcccaggatgag 312
Query: 119 ggggtgttgtcctcgaaaaggggcggtggtttcttcgtcgctttttcccgggatcagccg 178
||||||||||||||||||| ||| |||||||| || || ||||||||||||||||||||
Sbjct: 311 ggggtgttgtcctcgaaaaagggtggtggtttatttgttgctttttcccgggatcagcct 252
Query: 179 caaaaggtctacgtgcaacccaagataaaggaacagagttcaagactgtggaacttatta 238
||||||||||| ||||||| |||||||||||||| ||||||||| ||||||||||||||
Sbjct: 251 caaaaggtctatgtgcaacataagataaaggaacatagttcaagagtgtggaacttatta 192
Query: 239 ctgtccgatgcagtgatctacattgcaggctcttcgacgaaaatgcctgccgatgttaca 298
|||||||||||||| || |||||||| |||||||||||||||||||| || |||||||||
Sbjct: 191 ctgtccgatgcagttatttacattgcgggctcttcgacgaaaatgcccgctgatgttaca 132
Query: 299 gctgcgctagaggaggttatttgtaaagaaggtggtgtcaagcaagcggatgcttcgaaa 358
||||| || |||||||||||||||||||||||||||||||| |||| ||||||||| |||
Sbjct: 131 gctgcactggaggaggttatttgtaaagaaggtggtgtcaaacaagaggatgcttcaaaa 72
Query: 359 tggctcagggatctagaaagggctggtagacttaacatcgagacatggtcatagttgtga 418
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 71 tggctcagggatcttgaaagagctggtagacttaacatcgagacttggtcatagttgtga 12
Query: 419 tgg 421
|||
Sbjct: 11 tgg 9
>gb|CW156393.1|CW156393 104_559_11146661_116_36371_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146661, DNA
sequence
Length = 727
Score = 509 bits (257), Expect = e-143
Identities = 363/396 (91%), Gaps = 2/396 (0%)
Strand = Plus / Minus
Query: 1 gaaagggctgc-caggctgcagctgaaccancagcc-cggttctgttcttttttggctgt 58
||||||||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||||||
Sbjct: 396 gaaagggctgcacaggctgcagcagagccaacagccgcggttatgttcttctttggctgt 337
Query: 59 agaaaccaagaaaacgattttctatacaaggatttctggctaactcatgcgcaggatgag 118
||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 336 agaaaccaagataacgattttctatacaaggatttctggttaactcatgcccaggatgag 277
Query: 119 ggggtgttgtcctcgaaaaggggcggtggtttcttcgtcgctttttcccgggatcagccg 178
||||||||||||||||||| ||| |||||||| || || ||||||||||||||||||||
Sbjct: 276 ggggtgttgtcctcgaaaaagggtggtggtttatttgttgctttttcccgggatcagcct 217
Query: 179 caaaaggtctacgtgcaacccaagataaaggaacagagttcaagactgtggaacttatta 238
||||||||||| ||||||| |||||||||||||| ||||||||| ||||||||||||||
Sbjct: 216 caaaaggtctatgtgcaacataagataaaggaacatagttcaagagtgtggaacttatta 157
Query: 239 ctgtccgatgcagtgatctacattgcaggctcttcgacgaaaatgcctgccgatgttaca 298
|||||||||||||| || |||||||| |||||||||||||||||||| || |||||||||
Sbjct: 156 ctgtccgatgcagttatttacattgcgggctcttcgacgaaaatgcccgctgatgttaca 97
Query: 299 gctgcgctagaggaggttatttgtaaagaaggtggtgtcaagcaagcggatgcttcgaaa 358
||||| || |||||||||||||||||||||||||||||||| |||| ||||||||| |||
Sbjct: 96 gctgcactggaggaggttatttgtaaagaaggtggtgtcaaacaagaggatgcttcaaaa 37
Query: 359 tggctcagggatctagaaagggctggtagacttaac 394
|||||||||||||| ||||| |||||||||||||||
Sbjct: 36 tggctcagggatcttgaaagagctggtagacttaac 1
>gb|CD230946.1|CD230946 SS1_7_E05.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_7_E05_A012 3', mRNA sequence
Length = 559
Score = 323 bits (163), Expect = 1e-086
Identities = 214/231 (92%)
Strand = Plus / Plus
Query: 191 gtgcaacccaagataaaggaacagagttcaagactgtggaacttattactgtccgatgca 250
||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 3 gtgcaacataagataaaggaacatagttcaagagtgtggaacttattactgtccgatgca 62
Query: 251 gtgatctacattgcaggctcttcgacgaaaatgcctgccgatgttacagctgcgctagag 310
|| || |||||||| |||||||||||||||||||| || |||||||||||||| || |||
Sbjct: 63 gttatttacattgcgggctcttcgacgaaaatgcccgctgatgttacagctgcactggag 122
Query: 311 gaggttatttgtaaagaaggtggtgtcaagcaagcggatgcttcgaaatggctcagggat 370
||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct: 123 gaggttatttgtaaagaaggtggtgtcaaacaagaggatgcttcaaaatggctcagggat 182
Query: 371 ctagaaagggctggtagacttaacatcgagacatggtcatagttgtgatgg 421
|| ||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 183 cttgaaagagctggtagacttaacatcgagacttggtcatagttgtgatgg 233
Score = 147 bits (74), Expect = 2e-033
Identities = 143/165 (86%), Gaps = 7/165 (4%)
Strand = Plus / Plus
Query: 478 tgtaaatcaaaggcattggaaatgtggaaacgtgtagatgttaaagcatccaatacgga- 536
|||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||||
Sbjct: 315 tgtaaatcaaaggcattgaaaatgtggaaatttgtacatgtaaaagcatccaatacggaa 374
Query: 537 --gaaatagttggaggatgatctaaactttcctcatttagccctctgtacgaaacgccat 594
||||||||| ||||||||||||| ||||||||||||||||||| |||| || | |||
Sbjct: 375 gagaaatagttagaggatgatctaacatttcctcatttagccctctctacggaatgtcat 434
Query: 595 ttcgtttgattaagtgagcccagtaattacatcagcttttgttgc 639
||| ||||||| ||| |||||||||||||||||||||||||
Sbjct: 435 ttcatttgatt----gaggacagtaattacatcagcttttgttgc 475
>gb|CW139830.1|CW139830 104_530_11135453_148_34918_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135453, DNA
sequence
Length = 716
Score = 214 bits (108), Expect = 8e-054
Identities = 180/199 (90%), Gaps = 4/199 (2%)
Strand = Plus / Plus
Query: 1 gaaagggctgc-caggctgcagctgaaccancagcc-cggttctgttcttttttggctgt 58
||||||||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||||||
Sbjct: 518 gaaagggctgcacaggctgcagcagagccaacagccgcggttatgttcttctttggctgt 577
Query: 59 agaaaccaagaaaacgattttctatacaaggatttctggctaactcatgcgcaggatgag 118
||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 578 agaaaccaagataacgattttctatacaaggatttctggttaactcatgcccaggatgag 637
Query: 119 ggggtgttgtcctcgaaaaggggcggtggtttcttcgtcgctttttcccgggatcagccg 178
||||||||||||||||||| ||| |||||||| || || |||||||||| |||||||||
Sbjct: 638 ggggtgttgtcctcgaaaaagggtggtggtttatttgttgctttttccc-ggatcagcct 696
Query: 179 caaaaggtctacgtgcaac 197
| ||||||||| |||||||
Sbjct: 697 c-aaaggtctatgtgcaac 714
>gb|CW156394.1|CW156394 104_559_11146661_148_36372_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146661, DNA
sequence
Length = 673
Score = 192 bits (97), Expect = 3e-047
Identities = 140/152 (92%), Gaps = 2/152 (1%)
Strand = Plus / Plus
Query: 1 gaaagggctgc-caggctgcagctgaaccancagcc-cggttctgttcttttttggctgt 58
||||||||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||||||
Sbjct: 513 gaaagggctgcacaggctgcagcagagccaacagccgcggttatgttcttctttggctgt 572
Query: 59 agaaaccaagaaaacgattttctatacaaggatttctggctaactcatgcgcaggatgag 118
||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 573 agaaaccaagataacgattttctatacaaggatttctggttaactcatgcccaggatgag 632
Query: 119 ggggtgttgtcctcgaaaaggggcggtggttt 150
||||||||||||||||||| ||| ||||||||
Sbjct: 633 ggggtgttgtcctcgaaaaagggtggtggttt 664
>gb|CW451609.1|CW451609 fsbb001f191m02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f191m02, DNA
sequence
Length = 602
Score = 153 bits (77), Expect = 2e-035
Identities = 114/124 (91%), Gaps = 2/124 (1%)
Strand = Plus / Plus
Query: 1 gaaagggctgc-caggctgcagctgaaccancagcc-cggttctgttcttttttggctgt 58
||||||||||| ||||||||||| || ||| ||||| ||||| ||||||| |||||||||
Sbjct: 475 gaaagggctgcacaggctgcagcagagccaacagccgcggttatgttcttctttggctgt 534
Query: 59 agaaaccaagaaaacgattttctatacaaggatttctggctaactcatgcgcaggatgag 118
||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 535 agaaaccaagataacgattttctatacaaggatttctggttaactcatgcccaggatgag 594
Query: 119 gggg 122
||||
Sbjct: 595 gggg 598
>gb|CW263419.1|CW263419 104_731_11230685_148_35217_021 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11230685, DNA
sequence
Length = 725
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 554 atctaaactttcctcattta 573
||||||||||||||||||||
Sbjct: 90 atctaaactttcctcattta 109
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 138,869
Number of Sequences: 832831
Number of extensions: 138869
Number of successful extensions: 38199
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38179
Number of HSP's gapped (non-prelim): 13
length of query: 666
length of database: 491,359,669
effective HSP length: 19
effective length of query: 647
effective length of database: 475,535,880
effective search space: 307671714360
effective search space used: 307671714360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)