BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647917.2.1
(3189 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW565300.1|AW565300 LG1_342_G02.g1_A002 Light Grown 1 (L... 789 0.0
gb|CX609984.1|CX609984 ANR1_16_A04.b1_A002 Anaerobic roots ... 733 0.0
gb|BG102792.1|BG102792 RHIZ2_33_E06.b1_A003 Rhizome2 (RHIZ2... 708 0.0
gb|CW152454.1|CW152454 104_553_11144500_116_36324_004 Sorgh... 672 0.0
gb|CX610069.1|CX610069 ANR1_16_A04.g1_A002 Anaerobic roots ... 515 e-144
gb|BG102478.1|BG102478 RHIZ2_33_E06.g1_A003 Rhizome2 (RHIZ2... 424 e-116
gb|CW257299.1|CW257299 104_722_11227262_116_35151_051 Sorgh... 272 2e-070
gb|CW257300.1|CW257300 104_722_11227262_148_35147_051 Sorgh... 210 6e-052
gb|CW152455.1|CW152455 104_553_11144500_148_36328_004 Sorgh... 202 1e-049
gb|CW152451.1|CW152451 104_553_11144498_148_36328_003 Sorgh... 186 9e-045
gb|BZ695529.1|BZ695529 SP__Ba0064O23.f SP__Ba Sorghum propi... 52 3e-004
gb|CW074463.1|CW074463 104_348_10803808_116_31380_016 Sorgh... 52 3e-004
gb|CW393659.1|CW393659 fsbb001f080n04f0 Sorghum methylation... 52 3e-004
gb|AW565461.1|AW565461 LG1_344_F11.g1_A002 Light Grown 1 (L... 52 3e-004
gb|CW162333.1|CW162333 104_569_11150888_116_36441_022 Sorgh... 50 0.001
gb|CW266445.1|CW266445 104_736_11232431_116_35283_094 Sorgh... 50 0.001
gb|CW266446.1|CW266446 104_736_11232431_148_35287_094 Sorgh... 50 0.001
gb|CX608855.1|CX608855 ANR1_9_E02.b1_A002 Anaerobic roots S... 50 0.001
gb|CL162355.1|CL162355 104_354_10806351_114_31830_255 Sorgh... 44 0.079
gb|CW047399.1|CW047399 104_285_10512706_115_30217 Sorghum m... 44 0.079
gb|CW169498.1|CW169498 104_579_11154705_148_36504_039 Sorgh... 44 0.079
gb|CW174363.1|CW174363 104_586_11157363_148_36559_008 Sorgh... 44 0.079
gb|CW208623.1|CW208623 104_638_11188769_116_36977_075 Sorgh... 44 0.079
gb|CW216985.1|CW216985 104_650_11195414_148_37135_063 Sorgh... 44 0.079
gb|CW261761.1|CW261761 104_729_11229688_148_35206_064 Sorgh... 44 0.079
gb|CW277847.1|CW277847 104_752_11406242_148_35418_013 Sorgh... 44 0.079
gb|CW358834.1|CW358834 fsbb001f026d07f0 Sorghum methylation... 44 0.079
gb|CW449101.1|CW449101 fsbb001f183a24f0 Sorghum methylation... 44 0.079
gb|CW456245.1|CW456245 fsbb001f201i03k0 Sorghum methylation... 44 0.079
gb|CF073150.1|CF073150 FE1_28_G06.b1_A002 Iron-deficient se... 44 0.079
gb|CX611331.1|CX611331 ANR1_24_B11.b1_A002 Anaerobic roots ... 44 0.079
gb|CW089706.1|CW089706 104_435_10948861_114_32588_059 Sorgh... 42 0.31
gb|CW089707.1|CW089707 104_435_10948861_116_32598_059 Sorgh... 42 0.31
gb|CW179729.1|CW179729 104_594_11160254_148_36631_063 Sorgh... 42 0.31
gb|CW243915.1|CW243915 104_704_11220309_116_37577_085 Sorgh... 42 0.31
gb|CW255366.1|CW255366 104_720_11226196_148_35135_016 Sorgh... 42 0.31
gb|CW269445.1|CW269445 104_740_11401847_148_35314_086 Sorgh... 42 0.31
gb|CW279473.1|CW279473 104_754_11407096_116_35436_060 Sorgh... 42 0.31
gb|CW500296.1|CW500296 fsbb001f295i21f0 Sorghum methylation... 42 0.31
>gb|AW565300.1|AW565300 LG1_342_G02.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 664
Score = 789 bits (398), Expect = 0.0
Identities = 514/550 (93%), Gaps = 2/550 (0%)
Strand = Plus / Minus
Query: 242 caacagggcatgaaaggccgaacttaaaatactgctcaacaatggcagaaagtcgctgct 301
|||||||||||||| | ||||||||||||| ||||||| || |||||||||||| |||||
Sbjct: 549 caacagggcatgaa-gtccgaacttaaaatgctgctcagcattggcagaaagtcactgct 491
Query: 302 caggttcctgcatctcctgaa-tttcttcagaagttgtgctgcaagtacaggttctcttg 360
| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ctggtttctgcatctccagaaatttcttcagaagttgtgctgcaagtacaggttctcttg 431
Query: 361 tggtgaagctggagcgatttcttcctccagtgaccgcagtccgtcacctatgctgctccc 420
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 430 tggtgaagccggagcgatttcttcctccagtgaccgcaggccatcacctatgctgctccc 371
Query: 421 gacgttcctgccgtctgtggcccttcgaccaacgatgtcagcttcggatgcagatgattt 480
||||||||| || ||||||| |||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 370 gacgttcctaccatctgtggtccttcggccaacaatgtcagcttcagatgcagatgattt 311
Query: 481 cctcctctgtgatgaggtcacgctaggaaaagttatccaggaaggtgccctgtacccgat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 310 cctcctctgtgatgaggtcacgctaggaaaagttatccaggaaggtgccctgtactcaat 251
Query: 541 cccctggtcctccccgtcagcaagctcgttctctgagcaggagtggttagaggacatctg 600
|| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 250 ccgctggtcctcaccgtcagcaagctcgttctctgagcaagagtggttagaggacatctg 191
Query: 601 tgacaccttgtgcatgcggctgcttccaagaacaacctcggtcggtagaatgggctgctc 660
||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 190 tgataccttgtgcattcggctgcttccaagaacaacctcagtcggcagaatgggctgctc 131
Query: 661 gatgcaggggctgcccatcagcagtgcaagggcgtgctctagagctgtcgtcaccttatc 720
|||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct: 130 aatgcagggactgcccatcagcagtgcaagggcatgctctagagcagttgtcaccttatc 71
Query: 721 catggaaggccgatctttacctcgcattctgacacacttacatgccacagaagcaatctt 780
|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 70 catggaaggccggtctttcccccgcattctgacacacttacatgccacagaagcaatctt 11
Query: 781 cttgagggcc 790
||||||||||
Sbjct: 10 cttgagggcc 1
Score = 83.8 bits (42), Expect = 9e-014
Identities = 55/58 (94%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 154 gaatgcttctggacgctaaaaagaattcttccagtactaattagctccctgtttttag 211
||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 658 gaatgcttctggatgctaaaaa-aattcttccagtactaattagctctctgtttttag 602
>gb|CX609984.1|CX609984 ANR1_16_A04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_16_A04_A002 3', mRNA sequence
Length = 804
Score = 733 bits (370), Expect = 0.0
Identities = 488/525 (92%), Gaps = 2/525 (0%)
Strand = Plus / Minus
Query: 242 caacagggcatgaaaggccgaacttaaaatactgctcaacaatggcagaaagtcgctgct 301
|||||||||||||| | ||||||||||||| ||||||| || |||||||||||| |||||
Sbjct: 524 caacagggcatgaa-gtccgaacttaaaatgctgctcagcattggcagaaagtcactgct 466
Query: 302 caggttcctgcatctcctgaa-tttcttcagaagttgtgctgcaagtacaggttctcttg 360
| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ctggtttctgcatctccagaaatttcttcagaagttgtgctgcaagtacaggttctcttg 406
Query: 361 tggtgaagctggagcgatttcttcctccagtgaccgcagtccgtcacctatgctgctccc 420
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 405 tggtgaagccggagcgatttcttcctccagtgaccgcaggccatcacctatgctgctccc 346
Query: 421 gacgttcctgccgtctgtggcccttcgaccaacgatgtcagcttcggatgcagatgattt 480
||||||||| || ||||||| |||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 345 gacgttcctaccatctgtggtccttcggccaacaatgtcagcttcagatgcagatgattt 286
Query: 481 cctcctctgtgatgaggtcacgctaggaaaagttatccaggaaggtgccctgtacccgat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 285 cctcctctgtgatgaggtcacgctaggaaaagttatccaggaaggtgccctgtactcaat 226
Query: 541 cccctggtcctccccgtcagcaagctcgttctctgagcaggagtggttagaggacatctg 600
|| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 225 ccgctggtcctcaccgtcagcaagctcgttctctgagcaagagtggttagaggacatctg 166
Query: 601 tgacaccttgtgcatgcggctgcttccaagaacaacctcggtcggtagaatgggctgctc 660
||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 165 tgataccttgtgcattcggctgcttccaagaacaacctcagtcggcagaatgggctgctc 106
Query: 661 gatgcaggggctgcccatcagcagtgcaagggcgtgctctagagctgtcgtcaccttatc 720
|||||||| |||||||||| |||||||||||| ||||||||||| || |||||||||||
Sbjct: 105 aatgcagggactgcccatcancagtgcaagggcatgctctagagcagttgtcaccttatc 46
Query: 721 catggaaggccgatctttacctcgcattctgacacacttacatgc 765
|||||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 45 catggaaggccggtctttcccccgcattctgacacacttacatgc 1
Score = 202 bits (102), Expect = 1e-049
Identities = 164/182 (90%), Gaps = 2/182 (1%)
Strand = Plus / Minus
Query: 30 gatctgaaggattaaggaaactacccagttttgcaagctaaggatacacgataatccatc 89
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 756 gatctgaaggatcaaggaaactacacagttttgcaagctaaggatacaagataatccatc 697
Query: 90 aactgcagccaccagaagataaattgtaccaggaaaataaaagggaccatacgaatctac 149
||||||| ||| ||||||||| || | |||||||| |||||||||||| ||||||||
Sbjct: 696 aactgcaaccatcagaagatagatcatgacaggaaaa-gaaagggaccatatgaatctac 638
Query: 150 agatgaatgcttctggacgctaaaaagaattcttccagtactaattagctccctgttttt 209
| | ||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 637 aaaggaatgcttctggatgctaaaaa-aattcttccagtactaattagctctctgttttt 579
Query: 210 ag 211
||
Sbjct: 578 ag 577
>gb|BG102792.1|BG102792 RHIZ2_33_E06.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 538
Score = 708 bits (357), Expect = 0.0
Identities = 462/497 (92%)
Strand = Plus / Minus
Query: 2107 agtctcagcaggcactccacaagtgaagtaatccccagccacaagagcatacatcttcag 2166
|||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||
Sbjct: 538 agtctcagcaggcactccacaagtaaagtagtccccagcgacaagcgcatacatcttcag 479
Query: 2167 cccttttggtggcgatgtactgttatgaagagtgaagccccagcaagccacttggtggtc 2226
|||||| ||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 478 ccctttcggtggtgacgtactgttatgaagagtgaaaccccagcaagccacttggtggtc 419
Query: 2227 aaggctcctgatgccacaagcatggaaccgcccgccaaccacagtgctcattgcatccat 2286
|||||||||||||||||| |||||||||||||| |||||||||| | ||||||||||||
Sbjct: 418 aaggctcctgatgccacatgcatggaaccgcccaccaaccacagcgaccattgcatccat 359
Query: 2287 cggcactatgttcacatcaccatcaccgatagcactggatggcaccacctgctgcatctc 2346
||||||||||||||||||||||| |||||||||||||| || | ||||||||||| ||
Sbjct: 358 tggcactatgttcacatcaccatcgccgatagcactggacggtgctacctgctgcatttc 299
Query: 2347 caagctcctgccccagcagaacacctgtgcattctccaacaccccacagacatggtaacc 2406
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 298 caagctcctgccccagcagaacacctgtgcattttccaacaccccacagacatggtaacc 239
Query: 2407 gcccgcgcctatagactgaaagtgcagatccctcggtgccagcccaacgacaccactcac 2466
|||||||| |||||||| ||| ||| || ||||||||||||||||||||||||||||||
Sbjct: 238 acccgcgccgatagactggaagcgcacattcctcggtgccagcccaacgacaccactcac 179
Query: 2467 cgtctcgtcgccccagcagaacaccgtcctgttccgagcaaacaagccacaattgaacac 2526
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 178 tgtctcgtcgccccagcagaacaccgtcctgttccgagcaaacaagccgcaattgaacac 119
Query: 2527 cgaaccagctgaaacagtcgacacggcttcatcaacagcatgtgtggcggtcatattgta 2586
|||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct: 118 cgaaccggctgaaacagtcgacacggcttcatcgacgacatgcgtggcggtcatattgta 59
Query: 2587 tccccagcagtcaatca 2603
|||||||||||| ||||
Sbjct: 58 tccccagcagtcgatca 42
>gb|CW152454.1|CW152454 104_553_11144500_116_36324_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144500, DNA
sequence
Length = 688
Score = 672 bits (339), Expect = 0.0
Identities = 446/479 (93%), Gaps = 2/479 (0%)
Strand = Plus / Minus
Query: 242 caacagggcatgaaaggccgaacttaaaatactgctcaacaatggcagaaagtcgctgct 301
|||||||||||||| | ||||||||||||| ||||||| || |||||||||||| |||||
Sbjct: 478 caacagggcatgaa-gtccgaacttaaaatgctgctcagcattggcagaaagtcactgct 420
Query: 302 caggttcctgcatctcctgaa-tttcttcagaagttgtgctgcaagtacaggttctcttg 360
| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ctggtttctgcatctccagaaatttcttcagaagttgtgctgcaagtacaggttctcttg 360
Query: 361 tggtgaagctggagcgatttcttcctccagtgaccgcagtccgtcacctatgctgctccc 420
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 359 tggtgaagccggagcgatttcttcctccagtgaccgcaggccatcacctatgctgctccc 300
Query: 421 gacgttcctgccgtctgtggcccttcgaccaacgatgtcagcttcggatgcagatgattt 480
||||||||| || ||||||| |||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 299 gacgttcctaccatctgtggtccttcggccaacaatgtcagcttcagatgcagatgattt 240
Query: 481 cctcctctgtgatgaggtcacgctaggaaaagttatccaggaaggtgccctgtacccgat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 239 cctcctctgtgatgaggtcacgctaggaaaagttatccaggaaggtgccctgtactcaat 180
Query: 541 cccctggtcctccccgtcagcaagctcgttctctgagcaggagtggttagaggacatctg 600
|| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 179 ccgctggtcctcaccgtcagcaagctcgttctctgagcaagagtggttagaggacatctg 120
Query: 601 tgacaccttgtgcatgcggctgcttccaagaacaacctcggtcggtagaatgggctgctc 660
||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 119 tgataccttgtgcattcggctgcttccaagaacaacctcagtcggcagaatgggctgctc 60
Query: 661 gatgcaggggctgcccatcagcagtgcaagggcgtgctctagagctgtcgtcaccttat 719
|||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 59 aatgcagggactgcccatcagcagtgcaagggcatgctctagagcagttgtcaccttat 1
Score = 151 bits (76), Expect = 5e-034
Identities = 132/148 (89%), Gaps = 2/148 (1%)
Strand = Plus / Minus
Query: 64 aagctaaggatacacgataatccatcaactgcagccaccagaagataaattgtaccagga 123
|||||||||||||| |||||||||||||||||| ||| ||||||||| || | |||||
Sbjct: 676 aagctaaggatacaagataatccatcaactgcaaccatcagaagatagatcatgacagga 617
Query: 124 aaataaaagggaccatacgaatctacagatgaatgcttctggacgctaaaaagaattctt 183
||| |||||||||||| ||||||||| | ||||||||||||| |||||||| |||||||
Sbjct: 616 aaa-gaaagggaccatatgaatctacaaaggaatgcttctggatgctaaaaa-aattctt 559
Query: 184 ccagtactaattagctccctgtttttag 211
||||||||||||||||| ||||||||||
Sbjct: 558 ccagtactaattagctctctgtttttag 531
>gb|CX610069.1|CX610069 ANR1_16_A04.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_16_A04_A002 5', mRNA sequence
Length = 764
Score = 515 bits (260), Expect = e-144
Identities = 364/396 (91%), Gaps = 2/396 (0%)
Strand = Plus / Minus
Query: 2656 gcagaggtggttgtcccccgcactgagctcagagtaccttgcgccctcaaccatcggctg 2715
||||||||||||||||||||| |||||||| |||||||| || ||||| |||||||| ||
Sbjct: 758 gcagaggtggttgtcccccgcgctgagctcggagtacctcgcaccctcgaccatcggttg 699
Query: 2716 tggcaccccgctcttgacataggagttgctaccccagcagtatggctgcctggtgtcgag 2775
||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct: 698 cggcaccccgctcttgacataggagttgctcccccagcaatacggctgcctggtgtcgag 639
Query: 2776 caggaggccacacacgaacccatcccctgccgtgaggccaaggaaagggatgttgggtgg 2835
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct: 638 caggaggccgcacacgaacccatcccccgccgtgaggccaaggaacgggatgttgggcgg 579
Query: 2836 tgcgccgtacaggacagatgcatcagcaccgaagcaggcgacgaggtgggagccgtcgga 2895
|||| ||||| || || || || ||||| |||||||||||||||||||||||||||||
Sbjct: 578 gccgccatacagaaccgaggcgtccgcaccaaagcaggcgacgaggtgggagccgtcgga 519
Query: 2896 gttgaggccacagaacaccggaccatcctccccataggacaccgcaatggacgacatgga 2955
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 518 gttgaggccacagaacaccggaccgtcctccccataggacaccgcgatggacgacatgga 459
Query: 2956 gccaaggccacaggcccagccaggcagcagggccaggaagcagcac-ccggcaagaacta 3014
||||||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||
Sbjct: 458 gccaaggccactagcccagccaggcagcaaggccaggaagca-cacggcggcaagaacta 400
Query: 3015 gagccggcacatggtccatgtcttgaaacttggggc 3050
|||| |||||||||||||||||||||||||||||||
Sbjct: 399 gagctggcacatggtccatgtcttgaaacttggggc 364
Score = 65.9 bits (33), Expect = 2e-008
Identities = 49/54 (90%), Gaps = 4/54 (7%)
Strand = Plus / Minus
Query: 3080 ccgagaagattcctttatgctgcgagcatgcc----agtaagcacgaaacgggg 3129
||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 345 ccgagaagatttctttatgctgcgagcatgccggtaagtaagcacgaaacgggg 292
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 3152 cagtcaccctcgctgcgcagcatttcaccaggcccc 3187
|||||||||| |||||||||||||| |||||||||
Sbjct: 258 cagtcaccctggctgcgcagcattttgccaggcccc 223
>gb|BG102478.1|BG102478 RHIZ2_33_E06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 365
Score = 424 bits (214), Expect = e-116
Identities = 282/302 (93%), Gaps = 2/302 (0%)
Strand = Plus / Minus
Query: 242 caacagggcatgaaaggccgaacttaaaatactgctcaacaatggcagaaagtcgctgct 301
|||||||||||||| | ||||||||||||| ||||||| || |||||||||||| |||||
Sbjct: 305 caacagggcatgaa-gtccgaacttaaaatgctgctcagcattggcagaaagtcactgct 247
Query: 302 caggttcctgcatctcctgaa-tttcttcagaagttgtgctgcaagtacaggttctcttg 360
| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctggtttctgcatctccagaaatttcttcagaagttgtgctgcaagtacaggttctcttg 187
Query: 361 tggtgaagctggagcgatttcttcctccagtgaccgcagtccgtcacctatgctgctccc 420
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 186 tggtgaagccggagcgatttcttcctccagtgaccgcaggccatcacctatgctgctccc 127
Query: 421 gacgttcctgccgtctgtggcccttcgaccaacgatgtcagcttcggatgcagatgattt 480
||||||||| || ||||||| |||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 126 gacgttcctaccatctgtggtccttcggccaacaatgtcagcttcagatgcagatgattt 67
Query: 481 cctcctctgtgatgaggtcacgctaggaaaagttatccaggaaggtgccctgtacccgat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 66 cctcctctgtgatgaggtcacgctaggaaaagttatccaggaaggtgccctgtactcgat 7
Query: 541 cc 542
||
Sbjct: 6 cc 5
>gb|CW257299.1|CW257299 104_722_11227262_116_35151_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227262, DNA
sequence
Length = 601
Score = 272 bits (137), Expect = 2e-070
Identities = 172/181 (95%), Gaps = 2/181 (1%)
Strand = Plus / Plus
Query: 2871 aggcgacgaggtgggagccgtcggagttgaggccacagaacaccggaccatcctccccat 2930
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 aggcgacgaggtgggagccgtcggagttgaggccacagaacaccggaccgtcctccccat 60
Query: 2931 aggacaccgcaatggacgacatggagccaaggccacaggcccagccaggcagcagggcca 2990
|||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 61 aggacaccgcgatggacgacatggagccaaggccactagcccagccaggcagcaaggcca 120
Query: 2991 ggaagcagcac-ccggcaagaactagagccggcacatggtccatgtcttgaaacttgggg 3049
||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 121 ggaagca-cacggcggcaagaactagagctggcacatggtccatgtcttgaaacttgggg 179
Query: 3050 c 3050
|
Sbjct: 180 c 180
Score = 52.0 bits (26), Expect = 3e-004
Identities = 39/43 (90%), Gaps = 4/43 (9%)
Strand = Plus / Plus
Query: 3091 cctttatgctgcgagcatgcc----agtaagcacgaaacgggg 3129
||||||||||||||||||||| ||||||||||||||||||
Sbjct: 370 cctttatgctgcgagcatgccggtaagtaagcacgaaacgggg 412
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 3152 cagtcaccctcgctgcgcagcatttcaccaggcccc 3187
|||||||||| |||||||||||||| |||||||||
Sbjct: 446 cagtcaccctggctgcgcagcattttgccaggcccc 481
>gb|CW257300.1|CW257300 104_722_11227262_148_35147_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227262, DNA
sequence
Length = 616
Score = 210 bits (106), Expect = 6e-052
Identities = 141/150 (94%), Gaps = 2/150 (1%)
Strand = Plus / Minus
Query: 2902 gccacagaacaccggaccatcctccccataggacaccgcaatggacgacatggagccaag 2961
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 616 gccacagaacaccggaccgtcctccccataggacaccgcgatggacgacatggagccaag 557
Query: 2962 gccacaggcccagccaggcagcagggccaggaagcagcac-ccggcaagaactagagccg 3020
||||| |||||||||||||||| |||||||||||| ||| |||||||||||||||| |
Sbjct: 556 gccactagcccagccaggcagcaaggccaggaagca-cacggcggcaagaactagagctg 498
Query: 3021 gcacatggtccatgtcttgaaacttggggc 3050
||||||||||||||||||||||||||||||
Sbjct: 497 gcacatggtccatgtcttgaaacttggggc 468
Score = 52.0 bits (26), Expect = 3e-004
Identities = 39/43 (90%), Gaps = 4/43 (9%)
Strand = Plus / Minus
Query: 3091 cctttatgctgcgagcatgcc----agtaagcacgaaacgggg 3129
||||||||||||||||||||| ||||||||||||||||||
Sbjct: 278 cctttatgctgcgagcatgccggtaagtaagcacgaaacgggg 236
Score = 48.1 bits (24), Expect = 0.005
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 3152 cagtcaccctcgctgcgcagcatttcaccaggcccc 3187
|||||||||| |||||||||||||| |||||||||
Sbjct: 202 cagtcaccctggctgcgcagcattttgccaggcccc 167
>gb|CW152455.1|CW152455 104_553_11144500_148_36328_004 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144500, DNA
sequence
Length = 706
Score = 202 bits (102), Expect = 1e-049
Identities = 164/182 (90%), Gaps = 2/182 (1%)
Strand = Plus / Plus
Query: 30 gatctgaaggattaaggaaactacccagttttgcaagctaaggatacacgataatccatc 89
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 414 gatctgaaggatcaaggaaactacacagttttgcaagctaaggatacaagataatccatc 473
Query: 90 aactgcagccaccagaagataaattgtaccaggaaaataaaagggaccatacgaatctac 149
||||||| ||| ||||||||| || | |||||||| |||||||||||| ||||||||
Sbjct: 474 aactgcaaccatcagaagatagatcatgacaggaaaa-gaaagggaccatatgaatctac 532
Query: 150 agatgaatgcttctggacgctaaaaagaattcttccagtactaattagctccctgttttt 209
| | ||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 533 aaaggaatgcttctggatgctaaaaa-aattcttccagtactaattagctctctgttttt 591
Query: 210 ag 211
||
Sbjct: 592 ag 593
Score = 50.1 bits (25), Expect = 0.001
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 242 caacagggcatgaaaggccgaacttaaaatactgctcaacaatggcagaaagtcgctgct 301
|||||||||||||| | ||||||||||| | ||||||| || |||||||||||| |||||
Sbjct: 646 caacagggcatgaa-gtccgaacttaaa-tgctgctcagcattggcagaaagtcactgct 703
Query: 302 c 302
|
Sbjct: 704 c 704
>gb|CW152451.1|CW152451 104_553_11144498_148_36328_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11144498, DNA
sequence
Length = 641
Score = 186 bits (94), Expect = 9e-045
Identities = 162/182 (89%), Gaps = 2/182 (1%)
Strand = Plus / Plus
Query: 30 gatctgaaggattaaggaaactacccagttttgcaagctaaggatacacgataatccatc 89
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 415 gatctgaaggatcaaggaaactacacagttttgcaagctaaggatacaagataatccatc 474
Query: 90 aactgcagccaccagaagataaattgtaccaggaaaataaaagggaccatacgaatctac 149
||||||| ||| ||||||||| || | |||||||| |||||||| ||| ||||||||
Sbjct: 475 aactgcaaccatcagaagatagatcatgacaggaaaa-gaaagggacaatatgaatctac 533
Query: 150 agatgaatgcttctggacgctaaaaagaattcttccagtactaattagctccctgttttt 209
| | ||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||||
Sbjct: 534 aaaggaatgcttctggatgctaaaaa-aattcttccagtactaaatagctctctgttttt 592
Query: 210 ag 211
||
Sbjct: 593 ag 594
>gb|BZ695529.1|BZ695529 SP__Ba0064O23.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0064O23 5', DNA sequence
Length = 1206
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 925 ctccaggagaacaaccccgaagctgtagac 954
||||||||||||||| ||||||||||||||
Sbjct: 87 ctccaggagaacaactccgaagctgtagac 116
>gb|CW074463.1|CW074463 104_348_10803808_116_31380_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10803808, DNA
sequence
Length = 715
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 929 aggagaacaaccccgaagctgtagacatca 958
|||||||||||||| |||||||||||||||
Sbjct: 503 aggagaacaaccccaaagctgtagacatca 474
>gb|CW393659.1|CW393659 fsbb001f080n04f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f080n04, DNA
sequence
Length = 683
Score = 52.0 bits (26), Expect = 3e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 929 aggagaacaaccccgaagctgtagacatca 958
|||||||||||||| |||||||||||||||
Sbjct: 63 aggagaacaaccccaaagctgtagacatca 92
>gb|AW565461.1|AW565461 LG1_344_F11.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 684
Score = 52.0 bits (26), Expect = 3e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 925 ctccaggagaacaaccccgaagctgtagacatca 958
|||||||||||| |||||||| ||||||||||||
Sbjct: 540 ctccaggagaacgaccccgaaactgtagacatca 507
>gb|CW162333.1|CW162333 104_569_11150888_116_36441_022 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150888, DNA
sequence
Length = 681
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 929 aggagaacaaccccgaagctgtagacatc 957
||||||||||||||||||||||| |||||
Sbjct: 167 aggagaacaaccccgaagctgtacacatc 139
>gb|CW266445.1|CW266445 104_736_11232431_116_35283_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232431, DNA
sequence
Length = 671
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 929 aggagaacaaccccgaagctgtagacatc 957
||||||||||||||||||||||| |||||
Sbjct: 604 aggagaacaaccccgaagctgtacacatc 632
>gb|CW266446.1|CW266446 104_736_11232431_148_35287_094 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232431, DNA
sequence
Length = 552
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 929 aggagaacaaccccgaagctgtagacatc 957
||||||||||||||||||||||| |||||
Sbjct: 433 aggagaacaaccccgaagctgtacacatc 405
>gb|CX608855.1|CX608855 ANR1_9_E02.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_9_E02_A002 3', mRNA sequence
Length = 762
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 929 aggagaacaaccccgaagctgtagacatc 957
||||||||||||||||||||||| |||||
Sbjct: 94 aggagaacaaccccgaagctgtacacatc 66
>gb|CL162355.1|CL162355 104_354_10806351_114_31830_255 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10806351, DNA
sequence
Length = 601
Score = 44.1 bits (22), Expect = 0.079
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 925 ctccaggagaacaaccccgaagctgtagac 954
||||||||| || |||||||||||||||||
Sbjct: 115 ctccaggagcactaccccgaagctgtagac 86
>gb|CW047399.1|CW047399 104_285_10512706_115_30217 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512706, DNA
sequence
Length = 344
Score = 44.1 bits (22), Expect = 0.079
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 989 tactcagggtcaaggtagccaagagtccctgctg 1022
|||||||| ||||||| ||||||||||||||||
Sbjct: 199 tactcaggtgcaaggtaaccaagagtccctgctg 232
>gb|CW169498.1|CW169498 104_579_11154705_148_36504_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154705, DNA
sequence
Length = 677
Score = 44.1 bits (22), Expect = 0.079
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 925 ctccaggagaacaaccccgaagctgtagacatca 958
||||| |||||| ||||||||||| |||||||||
Sbjct: 446 ctccaagagaaccaccccgaagctatagacatca 479
>gb|CW174363.1|CW174363 104_586_11157363_148_36559_008 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11157363, DNA
sequence
Length = 440
Score = 44.1 bits (22), Expect = 0.079
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 925 ctccaggagaacaaccccgaagctgtagac 954
|||||||||||| || ||||||||||||||
Sbjct: 97 ctccaggagaacgacgccgaagctgtagac 126
>gb|CW208623.1|CW208623 104_638_11188769_116_36977_075 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11188769, DNA
sequence
Length = 678
Score = 44.1 bits (22), Expect = 0.079
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1276 tccatgagccatgaactcataaacca 1301
||||||||||||| ||||||||||||
Sbjct: 570 tccatgagccatgtactcataaacca 595
>gb|CW216985.1|CW216985 104_650_11195414_148_37135_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195414, DNA
sequence
Length = 706
Score = 44.1 bits (22), Expect = 0.079
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 925 ctccaggagaacaaccccgaagctgtagac 954
|||||||||||| || ||||||||||||||
Sbjct: 146 ctccaggagaacgacgccgaagctgtagac 117
>gb|CW261761.1|CW261761 104_729_11229688_148_35206_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11229688, DNA
sequence
Length = 716
Score = 44.1 bits (22), Expect = 0.079
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 925 ctccaggagaacaaccccgaagctgtagac 954
||||||||| || |||||||||||||||||
Sbjct: 361 ctccaggagcactaccccgaagctgtagac 390
>gb|CW277847.1|CW277847 104_752_11406242_148_35418_013 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11406242, DNA
sequence
Length = 526
Score = 44.1 bits (22), Expect = 0.079
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 925 ctccaggagaacaaccccgaagctgtagac 954
||||||||| || |||||||||||||||||
Sbjct: 265 ctccaggagcactaccccgaagctgtagac 236
>gb|CW358834.1|CW358834 fsbb001f026d07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f026d07, DNA
sequence
Length = 552
Score = 44.1 bits (22), Expect = 0.079
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 925 ctccaggagaacaaccccgaagctgtagac 954
|||||||||||| || ||||||||||||||
Sbjct: 538 ctccaggagaacgacgccgaagctgtagac 509
>gb|CW449101.1|CW449101 fsbb001f183a24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f183a24, DNA
sequence
Length = 568
Score = 44.1 bits (22), Expect = 0.079
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 925 ctccaggagaacaaccccgaagctgtagacatca 958
||||| |||||| ||||||||||| |||||||||
Sbjct: 43 ctccaagagaaccaccccgaagctatagacatca 10
>gb|CW456245.1|CW456245 fsbb001f201i03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f201i03, DNA
sequence
Length = 660
Score = 44.1 bits (22), Expect = 0.079
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 925 ctccaggagaacaaccccgaagctgtagac 954
|||||||||||| || ||||||||||||||
Sbjct: 209 ctccaggagaacgacgccgaagctgtagac 238
>gb|CF073150.1|CF073150 FE1_28_G06.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_28_G06_A002 3', mRNA sequence
Length = 698
Score = 44.1 bits (22), Expect = 0.079
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 925 ctccaggagaacaaccccgaagctgtagacatca 958
|||||| |||||||| ||||||||||| ||||||
Sbjct: 161 ctccagaagaacaacgccgaagctgtaaacatca 128
>gb|CX611331.1|CX611331 ANR1_24_B11.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_24_B11_A002 3', mRNA sequence
Length = 703
Score = 44.1 bits (22), Expect = 0.079
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 925 ctccaggagaacaaccccgaagctgtagacatca 958
|||||| |||||||| ||||||||||| ||||||
Sbjct: 175 ctccagaagaacaacgccgaagctgtaaacatca 142
>gb|CW089706.1|CW089706 104_435_10948861_114_32588_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948861, DNA
sequence
Length = 718
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1115 atgtttgacgacttgatgtcccggtgaat 1143
||||| |||||||||||||||| ||||||
Sbjct: 217 atgttcgacgacttgatgtccctgtgaat 189
>gb|CW089707.1|CW089707 104_435_10948861_116_32598_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10948861, DNA
sequence
Length = 726
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1115 atgtttgacgacttgatgtcccggtgaat 1143
||||| |||||||||||||||| ||||||
Sbjct: 643 atgttcgacgacttgatgtccctgtgaat 671
>gb|CW179729.1|CW179729 104_594_11160254_148_36631_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11160254, DNA
sequence
Length = 695
Score = 42.1 bits (21), Expect = 0.31
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1115 atgtttgacgacttgatgtcccggtgaat 1143
||||| |||||||||||||||| ||||||
Sbjct: 369 atgttcgacgacttgatgtccctgtgaat 397
>gb|CW243915.1|CW243915 104_704_11220309_116_37577_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11220309, DNA
sequence
Length = 722
Score = 42.1 bits (21), Expect = 0.31
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 925 ctccaggagaacaaccccgaagctgtagacatc 957
|||||| || ||||| |||||||||||||||||
Sbjct: 217 ctccagaagcacaactccgaagctgtagacatc 249
>gb|CW255366.1|CW255366 104_720_11226196_148_35135_016 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11226196, DNA
sequence
Length = 671
Score = 42.1 bits (21), Expect = 0.31
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 925 ctccaggagaacaaccccgaagctgtagacatc 957
|||||| || ||||| |||||||||||||||||
Sbjct: 91 ctccagaagcacaactccgaagctgtagacatc 123
>gb|CW269445.1|CW269445 104_740_11401847_148_35314_086 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401847, DNA
sequence
Length = 550
Score = 42.1 bits (21), Expect = 0.31
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 925 ctccaggagaacaaccccgaagctgtagacatc 957
|||||| || ||||| |||||||||||||||||
Sbjct: 174 ctccagaagcacaactccgaagctgtagacatc 206
>gb|CW279473.1|CW279473 104_754_11407096_116_35436_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11407096, DNA
sequence
Length = 713
Score = 42.1 bits (21), Expect = 0.31
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 925 ctccaggagaacaaccccgaagctgtagacatc 957
|||||| || ||||| |||||||||||||||||
Sbjct: 117 ctccagaagcacaactccgaagctgtagacatc 149
>gb|CW500296.1|CW500296 fsbb001f295i21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f295i21, DNA
sequence
Length = 707
Score = 42.1 bits (21), Expect = 0.31
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 925 ctccaggagaacaaccccgaagctgtagacatc 957
|||||| || ||||| |||||||||||||||||
Sbjct: 485 ctccagaagcacaactccgaagctgtagacatc 453
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 732,087
Number of Sequences: 832831
Number of extensions: 732087
Number of successful extensions: 194133
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 194030
Number of HSP's gapped (non-prelim): 77
length of query: 3189
length of database: 491,359,669
effective HSP length: 21
effective length of query: 3168
effective length of database: 473,870,218
effective search space: 1501220850624
effective search space used: 1501220850624
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)