BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647895.2.1
(709 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG464822.1|BG464822 EM1_34_F10.g1_A002 Embryo 1 (EM1) So... 281 4e-074
gb|BF317887.1|BF317887 OV1_10_H12.g1_A002 Ovary 1 (OV1) Sor... 224 9e-057
gb|BI076268.1|BI076268 IP1_25_A09.g1_A002 Immature pannicle... 151 1e-034
gb|BZ342244.1|BZ342244 ic81d07.b1 WGS-SbicolorF (JM107 adap... 119 4e-025
gb|CW100795.1|CW100795 104_468_11004297_116_34396_041 Sorgh... 119 4e-025
gb|CW188581.1|CW188581 104_608_11173117_148_36730_055 Sorgh... 119 4e-025
gb|CW321503.1|CW321503 104_814_11475589_148_35938_049 Sorgh... 119 4e-025
gb|BZ342245.1|BZ342245 ic81d07.g1 WGS-SbicolorF (JM107 adap... 101 9e-020
gb|CW048491.1|CW048491 104_287_10513419_114_30211 Sorghum m... 90 3e-016
gb|CW257776.1|CW257776 104_723_11227518_148_35157_025 Sorgh... 90 3e-016
gb|CW366633.1|CW366633 fsbb001f039l12f0 Sorghum methylation... 90 3e-016
gb|CW366634.1|CW366634 fsbb001f039l12k0 Sorghum methylation... 90 3e-016
gb|CL190381.1|CL190381 104_408_10906045_116_32501_055 Sorgh... 78 1e-012
gb|CW146842.1|CW146842 104_539_11139204_116_34991_034 Sorgh... 78 1e-012
gb|CW176428.1|CW176428 104_589_11158481_148_36583_073 Sorgh... 78 1e-012
gb|CW146843.1|CW146843 104_539_11139204_148_34987_034 Sorgh... 68 1e-009
gb|BZ781678.1|BZ781678 ii30h03.g1 WGS-SbicolorF (DH5a methy... 66 5e-009
gb|CW108786.1|CW108786 104_480_11097710_116_34494_053 Sorgh... 66 5e-009
gb|CW313653.1|CW313653 104_804_11471399_148_35796_096 Sorgh... 66 5e-009
gb|CW178111.1|CW178111 104_591_11159387_116_36607_036 Sorgh... 42 0.068
gb|CW045187.1|CW045187 104_281_10509407_114_30236 Sorghum m... 40 0.27
gb|CW226081.1|CW226081 104_664_11204699_116_37215_048 Sorgh... 40 0.27
>gb|BG464822.1|BG464822 EM1_34_F10.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 486
Score = 281 bits (142), Expect = 4e-074
Identities = 247/283 (87%), Gaps = 1/283 (0%)
Strand = Plus / Minus
Query: 282 agaggcttgcggcccaggacgaagaaggtcgctgtgaagataccttcccggccacctttt 341
|||||||||||| |||||||||||||||||||||||||||| ||||| |||| | ||
Sbjct: 322 agaggcttgcgggccaggacgaagaaggtcgctgtgaagattccttctcggcncaccctt 263
Query: 342 agaaggccatcagaggcactcatcaggacgttgtaggctcccatgctgcctgctggggca 401
||||||||||||||||||||| |||||| | ||||| |||| ||||||||||||||||
Sbjct: 262 agaaggccatcagaggcactcgtcaggaagctgtagattcccgcgctgcctgctggggca 203
Query: 402 atacggaggaactctagtgtattgacaattgcacgggtgacgatccgtcctgggcgtggg 461
|||||||||||||| | || |||||||||||||||||||| |||||||||||| |||| |
Sbjct: 202 atacggaggaactccaatgcattgacaattgcacgggtgatgatccgtcctggtcgtgtg 143
Query: 462 cattggaagtgagcccatgaaaannngnnnggatccatcacccggtaccacgggcaagga 521
||||||||| || ||||||||| | |||||||||| | |||||||||||||||||
Sbjct: 142 cattggaagctagtccatgaaaaattgttgggatccatcatctggtaccacgggcaagga 83
Query: 522 aaaacttgagcaagatcctttgcaaaaacgacctcaaatcctg 564
||| ||||||||||||||||||| | || ||||||||||||||
Sbjct: 82 aaatcttgagcaagatcctttgc-acaatgacctcaaatcctg 41
Score = 65.9 bits (33), Expect = 5e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 261 ttcactatatcagcttccttgagaggcttgcggcccaggacgaagaagg 309
|||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct: 437 ttcactatttcagtctccttgagaggcttgcggcccaggacgaaaaagg 389
>gb|BF317887.1|BF317887 OV1_10_H12.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 463
Score = 224 bits (113), Expect = 9e-057
Identities = 158/173 (91%)
Strand = Plus / Minus
Query: 282 agaggcttgcggcccaggacgaagaaggtcgctgtgaagataccttcccggccacctttt 341
|||||||||||| |||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct: 174 agaggcttgcgggccaggacgaagaaggtcgctgtgaagattccttctcggccacccttt 115
Query: 342 agaaggccatcagaggcactcatcaggacgttgtaggctcccatgctgcctgctggggca 401
||||||||||||||||||||| |||||| | ||||| |||| ||||||||||||||||
Sbjct: 114 agaaggccatcagaggcactcgtcaggaagctgtagattcccgcgctgcctgctggggca 55
Query: 402 atacggaggaactctagtgtattgacaattgcacgggtgacgatccgtcctgg 454
|||||||||||||| | || |||||||||||||||||||| ||||||||||||
Sbjct: 54 atacggaggaactccaatgcattgacaattgcacgggtgatgatccgtcctgg 2
Score = 65.9 bits (33), Expect = 5e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 261 ttcactatatcagcttccttgagaggcttgcggcccaggacgaagaagg 309
|||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct: 289 ttcactatttcagtctccttgagaggcttgcggcccaggacgaaaaagg 241
>gb|BI076268.1|BI076268 IP1_25_A09.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 474
Score = 151 bits (76), Expect = 1e-034
Identities = 223/269 (82%), Gaps = 6/269 (2%)
Strand = Plus / Minus
Query: 172 cacacctcagcacagaacacgttggacatgattcatagctcttatgagtacagccccata 231
|||||||||| |||||||| ||||| || |||||||||||||| || ||| |||||||
Sbjct: 328 cacacctcagtacagaacaagttggccactattcatagctctta--agcacaaccccata 271
Query: 232 cta-atcttgcagctcaaaggacgccgccgttcactatatcagcttccttgagaggcttg 290
|| || ||||| ||||||| ||| |||||||| |||| |||||||||||||||
Sbjct: 270 ctttatgttgcaactcaaagattgccc---ttcactatttcagtctccttgagaggcttg 214
Query: 291 cggcccaggacgaagaaggtcgctgtgaagataccttcccggccaccttttagaaggcca 350
|||||||||||||| |||| | ||||||| |||||| ||||||| |||||||||||
Sbjct: 213 cggcccaggacgaaaaaggcggggctgaagatcccttcctggccaccctttagaaggcct 154
Query: 351 tcagaggcactcatcaggacgttgtaggctcccatgctgcctgctggggcaatacggagg 410
|||||||| ||| || || ||||||| |||||||||||||||||||||||||| ||| |
Sbjct: 153 tcagaggccgtcagcatgaagttgtagactcccatgctgcctgctggggcaatatggaag 94
Query: 411 aactctagtgtattgacaattgcacgggt 439
||||| | ||| ||| ||||||||||||
Sbjct: 93 aactccaatgtgctgataattgcacgggt 65
>gb|BZ342244.1|BZ342244 ic81d07.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic81d07 5', DNA sequence
Length = 678
Score = 119 bits (60), Expect = 4e-025
Identities = 111/130 (85%)
Strand = Plus / Minus
Query: 426 acaattgcacgggtgacgatccgtcctgggcgtgggcattggaagtgagcccatgaaaan 485
|||||||||||||||| |||||||||||| |||| |||||||||| || |||||||||
Sbjct: 393 acaattgcacgggtgatgatccgtcctggtcgtgtgcattggaagctagtccatgaaaaa 334
Query: 486 nngnnnggatccatcacccggtaccacgggcaaggaaaaacttgagcaagatcctttgca 545
| ||||| ||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 333 ttgttgggatctatcgtctggtaccacgggcaaggaaaatcttgagcaagatcctttgca 274
Query: 546 aaaacgacct 555
||| |||||
Sbjct: 273 caaatgacct 264
Score = 95.6 bits (48), Expect = 5e-018
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 329 ccggccaccttttagaaggccatcagaggcactcatcaggacgttgtaggctcccatgct 388
||||||||| | |||||||||||||||||||||| ||| || | ||||| |||| |||
Sbjct: 604 ccggccaccctntagaaggccatcagaggcactcgtcaagaagctgtagattcccgcgct 545
Query: 389 gcctgctggggcaatacggaggaactc 415
|||||||||||||||||||||||||||
Sbjct: 544 gcctgctggggcaatacggaggaactc 518
Score = 46.1 bits (23), Expect = 0.004
Identities = 36/42 (85%)
Strand = Plus / Minus
Query: 552 acctcaaatcctgnnnntttcntagcttggacacattggcga 593
||||||||||||| |||| ||||||||||||| ||||||
Sbjct: 144 acctcaaatcctgcatctttcatagcttggacacactggcga 103
>gb|CW100795.1|CW100795 104_468_11004297_116_34396_041 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004297, DNA
sequence
Length = 738
Score = 119 bits (60), Expect = 4e-025
Identities = 111/130 (85%)
Strand = Plus / Minus
Query: 426 acaattgcacgggtgacgatccgtcctgggcgtgggcattggaagtgagcccatgaaaan 485
|||||||||||||||| |||||||||||| |||| |||||||||| || |||||||||
Sbjct: 190 acaattgcacgggtgatgatccgtcctggtcgtgtgcattggaagctagtccatgaaaaa 131
Query: 486 nngnnnggatccatcacccggtaccacgggcaaggaaaaacttgagcaagatcctttgca 545
| ||||| ||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 130 ttgttgggatctatcgtctggtaccacgggcaaggaaaatcttgagcaagatcctttgca 71
Query: 546 aaaacgacct 555
||| |||||
Sbjct: 70 caaatgacct 61
Score = 101 bits (51), Expect = 9e-020
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 329 ccggccaccttttagaaggccatcagaggcactcatcaggacgttgtaggctcccatgct 388
||||||||| |||||||||||||||||||||||| ||| || | ||||| |||| |||
Sbjct: 401 ccggccaccctttagaaggccatcagaggcactcgtcaagaagctgtagattcccgcgct 342
Query: 389 gcctgctggggcaatacggaggaactc 415
|||||||||||||||||||||||||||
Sbjct: 341 gcctgctggggcaatacggaggaactc 315
Score = 87.7 bits (44), Expect = 1e-015
Identities = 100/119 (84%)
Strand = Plus / Minus
Query: 212 cttatgagtacagccccatactaatcttgcagctcaaaggacgccgccgttcactatatc 271
||||| |||||| ||||||| | || ||||||||||||| |||| ||||| ||| |
Sbjct: 679 cttataagtacaaccccatagttatattgcagctcaaagattgccgtcgttcgctaatcc 620
Query: 272 agcttccttgagaggcttgcggcccaggacgaagaaggtcgctgtgaagataccttccc 330
|| ||||| ||||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct: 619 agtttcctgnagaggcttgcggcccaggacgaagaagctggctgtgaagattccttccc 561
>gb|CW188581.1|CW188581 104_608_11173117_148_36730_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11173117, DNA
sequence
Length = 674
Score = 119 bits (60), Expect = 4e-025
Identities = 111/130 (85%)
Strand = Plus / Plus
Query: 426 acaattgcacgggtgacgatccgtcctgggcgtgggcattggaagtgagcccatgaaaan 485
|||||||||||||||| |||||||||||| |||| |||||||||| || |||||||||
Sbjct: 245 acaattgcacgggtgatgatccgtcctggtcgtgtgcattggaagctagtccatgaaaaa 304
Query: 486 nngnnnggatccatcacccggtaccacgggcaaggaaaaacttgagcaagatcctttgca 545
| ||||| ||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 305 ttgttgggatctatcgtctggtaccacgggcaaggaaaatcttgagcaagatcctttgca 364
Query: 546 aaaacgacct 555
||| |||||
Sbjct: 365 caaatgacct 374
Score = 101 bits (51), Expect = 9e-020
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 329 ccggccaccttttagaaggccatcagaggcactcatcaggacgttgtaggctcccatgct 388
||||||||| |||||||||||||||||||||||| ||| || | ||||| |||| |||
Sbjct: 34 ccggccaccctttagaaggccatcagaggcactcgtcaagaagctgtagattcccgcgct 93
Query: 389 gcctgctggggcaatacggaggaactc 415
|||||||||||||||||||||||||||
Sbjct: 94 gcctgctggggcaatacggaggaactc 120
Score = 46.1 bits (23), Expect = 0.004
Identities = 36/42 (85%)
Strand = Plus / Plus
Query: 552 acctcaaatcctgnnnntttcntagcttggacacattggcga 593
||||||||||||| |||| ||||||||||||| ||||||
Sbjct: 494 acctcaaatcctgcatctttcatagcttggacacactggcga 535
>gb|CW321503.1|CW321503 104_814_11475589_148_35938_049 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11475589, DNA
sequence
Length = 708
Score = 119 bits (60), Expect = 4e-025
Identities = 111/130 (85%)
Strand = Plus / Plus
Query: 426 acaattgcacgggtgacgatccgtcctgggcgtgggcattggaagtgagcccatgaaaan 485
|||||||||||||||| |||||||||||| |||| |||||||||| || |||||||||
Sbjct: 204 acaattgcacgggtgatgatccgtcctggtcgtgtgcattggaagctagtccatgaaaaa 263
Query: 486 nngnnnggatccatcacccggtaccacgggcaaggaaaaacttgagcaagatcctttgca 545
| ||||| ||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 264 ttgttgggatctatcgtctggtaccacgggcaaggaaaatcttgagcaagatcctttgca 323
Query: 546 aaaacgacct 555
||| |||||
Sbjct: 324 caaatgacct 333
Score = 89.7 bits (45), Expect = 3e-016
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 339 tttagaaggccatcagaggcactcatcaggacgttgtaggctcccatgctgcctgctggg 398
|||||||||||||||||||||||| ||| || | ||||| |||| |||||||||||||
Sbjct: 3 tttagaaggccatcagaggcactcgtcaagaagctgtagattcccgcgctgcctgctggg 62
Query: 399 gcaatacggaggaactc 415
|||||||||||||||||
Sbjct: 63 gcaatacggaggaactc 79
Score = 46.1 bits (23), Expect = 0.004
Identities = 36/42 (85%)
Strand = Plus / Plus
Query: 552 acctcaaatcctgnnnntttcntagcttggacacattggcga 593
||||||||||||| |||| ||||||||||||| ||||||
Sbjct: 453 acctcaaatcctgcatctttcatagcttggacacactggcga 494
>gb|BZ342245.1|BZ342245 ic81d07.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic81d07 5', DNA sequence
Length = 657
Score = 101 bits (51), Expect = 9e-020
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 329 ccggccaccttttagaaggccatcagaggcactcatcaggacgttgtaggctcccatgct 388
||||||||| |||||||||||||||||||||||| ||| || | ||||| |||| |||
Sbjct: 420 ccggccaccctttagaaggccatcagaggcactcgtcaagaagctgtagattcccgcgct 479
Query: 389 gcctgctggggcaatacggaggaactc 415
|||||||||||||||||||||||||||
Sbjct: 480 gcctgctggggcaatacggaggaactc 506
Score = 101 bits (51), Expect = 9e-020
Identities = 102/119 (85%)
Strand = Plus / Plus
Query: 212 cttatgagtacagccccatactaatcttgcagctcaaaggacgccgccgttcactatatc 271
||||| |||||| ||||||| | || ||||||||||||| |||| ||||| ||| |
Sbjct: 142 cttataagtacaaccccatagttatattgcagctcaaagattgccgtcgttcgctaatcc 201
Query: 272 agcttccttgagaggcttgcggcccaggacgaagaaggtcgctgtgaagataccttccc 330
|| |||||||||||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct: 202 agtttccttgagaggcttgcggcccaggacgaagaagctggctgtgaagattccttccc 260
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 426 acaattgcacgggtgacgatccgtcct 452
|||||||||||||||| ||||||||||
Sbjct: 631 acaattgcacgggtgatgatccgtcct 657
>gb|CW048491.1|CW048491 104_287_10513419_114_30211 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513419, DNA
sequence
Length = 528
Score = 89.7 bits (45), Expect = 3e-016
Identities = 75/85 (88%)
Strand = Plus / Minus
Query: 331 ggccaccttttagaaggccatcagaggcactcatcaggacgttgtaggctcccatgctgc 390
||||||| ||||||||||| |||||||| ||| || || ||||||| ||||||||||||
Sbjct: 145 ggccaccctttagaaggccttcagaggccgtcagcatgaagttgtagactcccatgctgc 86
Query: 391 ctgctggggcaatacggaggaactc 415
|||||||||||||| ||| ||||||
Sbjct: 85 ctgctggggcaatatggaagaactc 61
Score = 67.9 bits (34), Expect = 1e-009
Identities = 115/139 (82%), Gaps = 6/139 (4%)
Strand = Plus / Minus
Query: 172 cacacctcagcacagaacacgttggacatgattcatagctcttatgagtacagccccata 231
|||||||||| |||||||| ||||| || |||||||||||||| || ||| |||||||
Sbjct: 442 cacacctcagtacagaacaagttggccactattcatagctctta--agcacaaccccata 385
Query: 232 cta-atcttgcagctcaaaggacgccgccgttcactatatcagcttccttgagaggcttg 290
|| || ||||| ||||||| ||| |||||||| |||| |||||||||||||||
Sbjct: 384 ctttatgttgcaactcaaagattgccc---ttcactatttcagtctccttgagaggcttg 328
Query: 291 cggcccaggacgaagaagg 309
|||||||||||||| ||||
Sbjct: 327 cggcccaggacgaaaaagg 309
>gb|CW257776.1|CW257776 104_723_11227518_148_35157_025 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227518, DNA
sequence
Length = 777
Score = 89.7 bits (45), Expect = 3e-016
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 331 ggccaccttttagaaggccatcagaggcactcatcaggacgttgtaggctcccatgctgc 390
||||||| ||||||||||| |||||||| ||| || || ||||||| ||||||||||||
Sbjct: 267 ggccaccctttagaaggccttcagaggccgtcagcatgaagttgtagactcccatgctgc 326
Query: 391 ctgctggggcaatacggaggaactc 415
|||||||||||||| ||| ||||||
Sbjct: 327 ctgctggggcaatatggaagaactc 351
Score = 65.9 bits (33), Expect = 5e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 261 ttcactatatcagcttccttgagaggcttgcggcccaggacgaagaagg 309
|||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct: 55 ttcactatttcagtctccttgagaggcttgcggcccaggacgaaaaagg 103
>gb|CW366633.1|CW366633 fsbb001f039l12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f039l12, DNA
sequence
Length = 567
Score = 89.7 bits (45), Expect = 3e-016
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 331 ggccaccttttagaaggccatcagaggcactcatcaggacgttgtaggctcccatgctgc 390
||||||| ||||||||||| |||||||| ||| || || ||||||| ||||||||||||
Sbjct: 353 ggccaccctttagaaggccttcagaggccgtcagcatgaagttgtagactcccatgctgc 412
Query: 391 ctgctggggcaatacggaggaactc 415
|||||||||||||| ||| ||||||
Sbjct: 413 ctgctggggcaatatggaagaactc 437
Score = 67.9 bits (34), Expect = 1e-009
Identities = 115/139 (82%), Gaps = 6/139 (4%)
Strand = Plus / Plus
Query: 172 cacacctcagcacagaacacgttggacatgattcatagctcttatgagtacagccccata 231
|||||||||| |||||||| ||||| || |||||||||||||| || ||| |||||||
Sbjct: 56 cacacctcagtacagaacaagttggccactattcatagctctta--agcacaaccccata 113
Query: 232 cta-atcttgcagctcaaaggacgccgccgttcactatatcagcttccttgagaggcttg 290
|| || ||||| ||||||| ||| |||||||| |||| |||||||||||||||
Sbjct: 114 ctttatgttgcaactcaaagattgccc---ttcactatttcagtctccttgagaggcttg 170
Query: 291 cggcccaggacgaagaagg 309
|||||||||||||| ||||
Sbjct: 171 cggcccaggacgaaaaagg 189
>gb|CW366634.1|CW366634 fsbb001f039l12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f039l12, DNA
sequence
Length = 586
Score = 89.7 bits (45), Expect = 3e-016
Identities = 75/85 (88%)
Strand = Plus / Minus
Query: 331 ggccaccttttagaaggccatcagaggcactcatcaggacgttgtaggctcccatgctgc 390
||||||| ||||||||||| |||||||| ||| || || ||||||| ||||||||||||
Sbjct: 237 ggccaccctttagaaggccttcagaggccgtcagcatgaagttgtagactcccatgctgc 178
Query: 391 ctgctggggcaatacggaggaactc 415
|||||||||||||| ||| ||||||
Sbjct: 177 ctgctggggcaatatggaagaactc 153
Score = 67.9 bits (34), Expect = 1e-009
Identities = 115/139 (82%), Gaps = 6/139 (4%)
Strand = Plus / Minus
Query: 172 cacacctcagcacagaacacgttggacatgattcatagctcttatgagtacagccccata 231
|||||||||| |||||||| ||||| || |||||||||||||| || ||| |||||||
Sbjct: 534 cacacctcagtacagaacaagttggccactattcatagctctta--agcacaaccccata 477
Query: 232 cta-atcttgcagctcaaaggacgccgccgttcactatatcagcttccttgagaggcttg 290
|| || ||||| ||||||| ||| |||||||| |||| |||||||||||||||
Sbjct: 476 ctttatgttgcaactcaaagattgccc---ttcactatttcagtctccttgagaggcttg 420
Query: 291 cggcccaggacgaagaagg 309
|||||||||||||| ||||
Sbjct: 419 cggcccaggacgaaaaagg 401
>gb|CL190381.1|CL190381 104_408_10906045_116_32501_055 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906045, DNA
sequence
Length = 765
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 282 agaggcttgcggcccaggacgaagaaggtcgctgtgaagataccttc 328
|||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 60 agaggcttgcgggccaggacgaagaaggtcgctgtgaagattccttc 14
Score = 65.9 bits (33), Expect = 5e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 261 ttcactatatcagcttccttgagaggcttgcggcccaggacgaagaagg 309
|||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct: 324 ttcactatttcagtctccttgagaggcttgcggcccaggacgaaaaagg 276
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 172 cacacctcagcacagaacacgttggacatgattcatagctctta 215
|||||||||| |||||||| ||||| || ||||||||||||||
Sbjct: 417 cacacctcagtacagaacaagttggccactattcatagctctta 374
>gb|CW146842.1|CW146842 104_539_11139204_116_34991_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11139204, DNA
sequence
Length = 773
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 282 agaggcttgcggcccaggacgaagaaggtcgctgtgaagataccttc 328
|||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 284 agaggcttgcgggccaggacgaagaaggtcgctgtgaagattccttc 238
Score = 65.9 bits (33), Expect = 5e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 261 ttcactatatcagcttccttgagaggcttgcggcccaggacgaagaagg 309
|||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct: 548 ttcactatttcagtctccttgagaggcttgcggcccaggacgaaaaagg 500
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 172 cacacctcagcacagaacacgttggacatgattcatagctctta 215
|||||||||| |||||||| ||||| || ||||||||||||||
Sbjct: 641 cacacctcagtacagaacaagttggccactattcatagctctta 598
>gb|CW176428.1|CW176428 104_589_11158481_148_36583_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158481, DNA
sequence
Length = 588
Score = 77.8 bits (39), Expect = 1e-012
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 282 agaggcttgcggcccaggacgaagaaggtcgctgtgaagataccttc 328
|||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 102 agaggcttgcgggccaggacgaagaaggtcgctgtgaagattccttc 56
Score = 65.9 bits (33), Expect = 5e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 261 ttcactatatcagcttccttgagaggcttgcggcccaggacgaagaagg 309
|||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct: 366 ttcactatttcagtctccttgagaggcttgcggcccaggacgaaaaagg 318
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 172 cacacctcagcacagaacacgttggacatgattcatagctctta 215
|||||||||| |||||||| ||||| || ||||||||||||||
Sbjct: 459 cacacctcagtacagaacaagttggccactattcatagctctta 416
>gb|CW146843.1|CW146843 104_539_11139204_148_34987_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11139204, DNA
sequence
Length = 724
Score = 67.9 bits (34), Expect = 1e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 261 ttcactatatcagcttccttgagaggcttgcggcccaggacgaagaagg 309
|||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct: 548 ttcactatttcagtctccttgagaggcttgcggcccaggacgaanaagg 596
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 172 cacacctcagcacagaacacgttggacatgattcatagctctta 215
|||||||||| |||||||| ||||| || ||||||||||||||
Sbjct: 455 cacacctcagtacagaacaagttggccactattcatagctctta 498
>gb|BZ781678.1|BZ781678 ii30h03.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ii30h03, DNA sequence
Length = 576
Score = 65.9 bits (33), Expect = 5e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 371 gttgtaggctcccatgctgcctgctggggcaatacggaggaactc 415
||||||| |||||||||||||||||||||||||| ||| ||||||
Sbjct: 26 gttgtagactcccatgctgcctgctggggcaatatggaagaactc 70
>gb|CW108786.1|CW108786 104_480_11097710_116_34494_053 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11097710, DNA
sequence
Length = 599
Score = 65.9 bits (33), Expect = 5e-009
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 371 gttgtaggctcccatgctgcctgctggggcaatacggaggaactc 415
||||||| |||||||||||||||||||||||||| ||| ||||||
Sbjct: 6 gttgtagactcccatgctgcctgctggggcaatatggaagaactc 50
>gb|CW313653.1|CW313653 104_804_11471399_148_35796_096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11471399, DNA
sequence
Length = 673
Score = 65.9 bits (33), Expect = 5e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 261 ttcactatatcagcttccttgagaggcttgcggcccaggacgaagaagg 309
|||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct: 160 ttcactatttcagtctccttgagaggcttgcggcccaggacgaaaaagg 112
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 172 cacacctcagcacagaacacgttggacatgattcatagctctta 215
|||||||||| |||||||| ||||| || ||||||||||||||
Sbjct: 253 cacacctcagtacagaacaagttggccactattcatagctctta 210
>gb|CW178111.1|CW178111 104_591_11159387_116_36607_036 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159387, DNA
sequence
Length = 753
Score = 42.1 bits (21), Expect = 0.068
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 401 aatacggaggaactctagtgt 421
|||||||||||||||||||||
Sbjct: 105 aatacggaggaactctagtgt 85
Score = 40.1 bits (20), Expect = 0.27
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 276 tccttgagaggcttgcggcccaggacgaagaaggtc 311
||||||||||| || ||||| ||||| |||||||||
Sbjct: 328 tccttgagaggtttccggccaaggacaaagaaggtc 293
>gb|CW045187.1|CW045187 104_281_10509407_114_30236 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10509407, DNA
sequence
Length = 655
Score = 40.1 bits (20), Expect = 0.27
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 115 gacccagcaggccagcacacagcgcaag 142
|||||||||||||||||| |||| ||||
Sbjct: 316 gacccagcaggccagcacgcagcacaag 343
>gb|CW226081.1|CW226081 104_664_11204699_116_37215_048 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11204699, DNA
sequence
Length = 635
Score = 40.1 bits (20), Expect = 0.27
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 115 gacccagcaggccagcacacagcgcaag 142
|||||||||||||||||| |||| ||||
Sbjct: 14 gacccagcaggccagcacgcagcacaag 41
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 121,594
Number of Sequences: 832831
Number of extensions: 121594
Number of successful extensions: 32101
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32016
Number of HSP's gapped (non-prelim): 76
length of query: 709
length of database: 491,359,669
effective HSP length: 20
effective length of query: 689
effective length of database: 474,703,049
effective search space: 327070400761
effective search space used: 327070400761
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)