BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2646712.2.1
(581 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX612381.1|CX612381 GABR1_2_D06.b1_A002 GA- or brassinol... 287 6e-076
gb|CD430959.1|CD430959 ETH1_6_A10.b1_A002 Ethylene-treated ... 280 1e-073
gb|CD430950.1|CD430950 ETH1_6_A08.b1_A002 Ethylene-treated ... 208 4e-052
gb|CW202632.1|CW202632 104_628_11185195_116_37086_066 Sorgh... 188 4e-046
gb|CW413255.1|CW413255 fsbb001f112e23f0 Sorghum methylation... 188 4e-046
gb|CW196299.1|CW196299 104_620_11181097_148_36814_011 Sorgh... 123 2e-026
gb|CW346173.1|CW346173 104_849_11488883_116_36217_040 Sorgh... 123 2e-026
gb|CW346174.1|CW346174 104_849_11488883_148_36218_040 Sorgh... 123 2e-026
gb|CW480229.1|CW480229 fsbb001f239d02f0 Sorghum methylation... 123 2e-026
gb|CW480230.1|CW480230 fsbb001f239d02k0 Sorghum methylation... 123 2e-026
gb|CN138460.1|CN138460 OX1_64_A03.b1_A002 Oxidatively-stres... 123 2e-026
gb|BG051912.1|BG051912 RHIZ2_6_E04.g1_A003 Rhizome2 (RHIZ2)... 121 8e-026
gb|AW678856.1|AW678856 WS1_1_A12.g1_A002 Water-stressed 1 (... 115 5e-024
gb|BE360923.1|BE360923 DG1_67_G03.g1_A002 Dark Grown 1 (DG1... 115 5e-024
gb|BE362142.1|BE362142 DG1_84_C11.g1_A002 Dark Grown 1 (DG1... 115 5e-024
gb|BE362152.1|BE362152 DG1_84_D11.g1_A002 Dark Grown 1 (DG1... 115 5e-024
gb|CD228671.1|CD228671 CCC1_9_E11.b1_A007 Callus culture/ce... 115 5e-024
gb|CN129192.1|CN129192 RHOH1_34_B10.b3_A002 Acid- and alkal... 115 5e-024
gb|BQ479088.1|BQ479088 pRC-1207 pRC Sorghum halepense cDNA ... 111 7e-023
gb|BM318321.1|BM318321 PI1_77_C02.g9_A002 Pathogen induced ... 109 3e-022
gb|BE360762.1|BE360762 DG1_66_C04.g2_A002 Dark Grown 1 (DG1... 107 1e-021
gb|CN137446.1|CN137446 OX1_57_G07.b1_A002 Oxidatively-stres... 107 1e-021
gb|CX608225.1|CX608225 ANR1_37_H09.b1_A002 Anaerobic roots ... 107 1e-021
gb|CN137561.1|CN137561 OX1_58_D03.b1_A002 Oxidatively-stres... 105 4e-021
gb|CX607016.1|CX607016 ANR1_6_E09.b1_A002 Anaerobic roots S... 100 3e-019
gb|CX608520.1|CX608520 ANR1_39_C06.b1_A002 Anaerobic roots ... 86 4e-015
gb|CW393089.1|CW393089 fsbb001f079p24f0 Sorghum methylation... 76 4e-012
gb|CW486807.1|CW486807 fsbb001f252e20f0 Sorghum methylation... 76 4e-012
gb|CW486808.1|CW486808 fsbb001f252e20k0 Sorghum methylation... 76 4e-012
gb|BI141372.1|BI141372 IP1_55_B03.g1_A002 Immature pannicle... 76 4e-012
gb|CB927052.1|CB927052 ABA1_13_F08.b1_A012 Abscisic acid-tr... 76 4e-012
gb|CN125480.1|CN125480 RHOH1_11_G11.b1_A002 Acid- and alkal... 68 1e-009
gb|CW047969.1|CW047969 104_285_10512975_114_30216 Sorghum m... 66 4e-009
gb|CW047970.1|CW047970 104_285_10512975_115_30217 Sorghum m... 66 4e-009
gb|CW351828.1|CW351828 fsbb001f013m09f0 Sorghum methylation... 66 4e-009
gb|BZ342273.1|BZ342273 ic81e11.b1 WGS-SbicolorF (JM107 adap... 56 4e-006
gb|CW317851.1|CW317851 104_809_11473636_148_35864_002 Sorgh... 56 4e-006
gb|CW377685.1|CW377685 fsbb001f056b22k0 Sorghum methylation... 56 4e-006
gb|CW408710.1|CW408710 fsbb001f102l13f0 Sorghum methylation... 56 4e-006
gb|CW202633.1|CW202633 104_628_11185195_148_37085_066 Sorgh... 44 0.014
gb|BZ351615.1|BZ351615 hw04e11.g1 WGS-SbicolorF (JM107 adap... 40 0.22
gb|CW317762.1|CW317762 104_809_11473586_148_35864_003 Sorgh... 40 0.22
gb|CW331425.1|CW331425 104_828_11480895_148_36020_052 Sorgh... 40 0.22
gb|CW491513.1|CW491513 fsbb001f281g15f0 Sorghum methylation... 40 0.22
gb|CF070740.1|CF070740 FE1_4_B05.b1_A002 Iron-deficient see... 40 0.22
>gb|CX612381.1|CX612381 GABR1_2_D06.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_2_D06_A002 3', mRNA sequence
Length = 636
Score = 287 bits (145), Expect = 6e-076
Identities = 225/251 (89%), Gaps = 3/251 (1%)
Strand = Plus / Minus
Query: 332 cagggagagggaggatgcccttctcctggaagcacacgacggtgtcgtacagcgcctgcg 391
|||||| ||||| ||||||||||||||||||||| | || |||||||||||| |||||||
Sbjct: 256 cagggatagggatgatgcccttctcctggaagcatatgatggtgtcgtacagggcctgcg 197
Query: 392 ccgccggggtgaactccaggcccagctccctcagccgctggttggagatcttgtacggct 451
||||||| |||||||||| ||||| ||||||||| ||||||||| |||||||||||||
Sbjct: 196 ccgccggcgtgaactccaagcccaagtccctcagcttctggttggatatcttgtacggct 137
Query: 452 gcttcctcgggttcacctcgtcagagcacctctccgggacggggtagcccgggaaggact 511
||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||||| |||
Sbjct: 136 gcttccttgggttcacctcatcagagcacctttccgggacggggtagtccgggaagaact 77
Query: 512 tgcggagggtgcggacgacgtcctcgcggtggagcacggcg---tcggcgcagatgtagc 568
||||||| || | |||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct: 76 tgcggagcgtcctgacgacgtcctcgcggtggagcacggcgccctcggcgcaaatgtacc 17
Query: 569 ggccggcggcg 579
|||||||||||
Sbjct: 16 ggccggcggcg 6
>gb|CD430959.1|CD430959 ETH1_6_A10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_A10_A002 3', mRNA sequence
Length = 555
Score = 280 bits (141), Expect = 1e-073
Identities = 201/221 (90%)
Strand = Plus / Minus
Query: 332 cagggagagggaggatgcccttctcctggaagcacacgacggtgtcgtacagcgcctgcg 391
|||||| ||||| ||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct: 232 cagggatagggatgatgcccttctcctggaagcatatgacggtgtcgtacagggcctgcg 173
Query: 392 ccgccggggtgaactccaggcccagctccctcagccgctggttggagatcttgtacggct 451
||||||| |||||||||| ||||| ||||||||| ||||||||| |||||||||||||
Sbjct: 172 ccgccggcgtgaactccaagcccaagtccctcagcttctggttggatatcttgtacggct 113
Query: 452 gcttcctcgggttcacctcgtcagagcacctctccgggacggggtagcccgggaaggact 511
||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||||| |||
Sbjct: 112 gcttccttgggttcacctcatcagagcacctttccgggacggggtagtccgggaagaact 53
Query: 512 tgcggagggtgcggacgacgtcctcgcggtggagcacggcg 552
||||||| || | ||||||||||||||||||||||||||||
Sbjct: 52 tgcggagcgtcctgacgacgtcctcgcggtggagcacggcg 12
>gb|CD430950.1|CD430950 ETH1_6_A08.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_A08_A002 3', mRNA sequence
Length = 477
Score = 208 bits (105), Expect = 4e-052
Identities = 165/185 (89%)
Strand = Plus / Minus
Query: 332 cagggagagggaggatgcccttctcctggaagcacacgacggtgtcgtacagcgcctgcg 391
|||||| | ||| ||||||||||||||||||||| | ||||||||| |||| |||||||
Sbjct: 185 cagggataaggatgatgcccttctcctggaagcatatgacggtgtcttacaaggcctgcg 126
Query: 392 ccgccggggtgaactccaggcccagctccctcagccgctggttggagatcttgtacggct 451
||||||| |||||||||| ||||| ||||||||| ||||||||| |||||||||||||
Sbjct: 125 ccgccggcgtgaactccaagcccaagtccctcagcttctggttggatatcttgtacggct 66
Query: 452 gcttcctcgggttcacctcgtcagagcacctctccgggacggggtagcccgggaaggact 511
||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||||| |||
Sbjct: 65 gcttccttgggttcacctcatcagagcacctttccgggacggggtagtccgggaagaact 6
Query: 512 tgcgg 516
|||||
Sbjct: 5 tgcgg 1
>gb|CW202632.1|CW202632 104_628_11185195_116_37086_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185195, DNA
sequence
Length = 716
Score = 188 bits (95), Expect = 4e-046
Identities = 137/151 (90%)
Strand = Plus / Minus
Query: 332 cagggagagggaggatgcccttctcctggaagcacacgacggtgtcgtacagcgcctgcg 391
|||||| ||||| ||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct: 698 cagggatagggatgatgcccttctcctggaagcatatgacggtgtcgtacagggcctgcg 639
Query: 392 ccgccggggtgaactccaggcccagctccctcagccgctggttggagatcttgtacggct 451
||||||| |||||||||| ||||| ||||||||| ||||||||| |||||||||||||
Sbjct: 638 ccgccggcgtgaactccaagcccaagtccctcagcttctggttggatatcttgtacggct 579
Query: 452 gcttcctcgggttcacctcgtcagagcacct 482
||||||| ||||||||||| |||||||||||
Sbjct: 578 gcttccttgggttcacctcatcagagcacct 548
>gb|CW413255.1|CW413255 fsbb001f112e23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f112e23, DNA
sequence
Length = 689
Score = 188 bits (95), Expect = 4e-046
Identities = 137/151 (90%)
Strand = Plus / Minus
Query: 332 cagggagagggaggatgcccttctcctggaagcacacgacggtgtcgtacagcgcctgcg 391
|||||| ||||| ||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct: 234 cagggatagggatgatgcccttctcctggaagcatatgacggtgtcgtacagggcctgcg 175
Query: 392 ccgccggggtgaactccaggcccagctccctcagccgctggttggagatcttgtacggct 451
||||||| |||||||||| ||||| ||||||||| ||||||||| |||||||||||||
Sbjct: 174 ccgccggcgtgaactccaagcccaagtccctcagcttctggttggatatcttgtacggct 115
Query: 452 gcttcctcgggttcacctcgtcagagcacct 482
||||||| ||||||||||| |||||||||||
Sbjct: 114 gcttccttgggttcacctcatcagagcacct 84
>gb|CW196299.1|CW196299 104_620_11181097_148_36814_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11181097, DNA
sequence
Length = 737
Score = 123 bits (62), Expect = 2e-026
Identities = 94/104 (90%), Gaps = 3/104 (2%)
Strand = Plus / Minus
Query: 479 acctctccgggacggggtagcccgggaaggacttgcggagggtgcggacgacgtcctcgc 538
|||| ||||||||||||||| |||||||| |||||||||| || | ||||||||||||||
Sbjct: 400 acctttccgggacggggtagtccgggaagaacttgcggagcgtcctgacgacgtcctcgc 341
Query: 539 ggtggagcacgg---cgtcggcgcagatgtagcggccggcggcg 579
|||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 340 ggtggagcacggcgccgtcggcgcagatgtaccggccggcggcg 297
>gb|CW346173.1|CW346173 104_849_11488883_116_36217_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488883, DNA
sequence
Length = 741
Score = 123 bits (62), Expect = 2e-026
Identities = 94/104 (90%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 479 acctctccgggacggggtagcccgggaaggacttgcggagggtgcggacgacgtcctcgc 538
|||| ||||||||||||||| |||||||| |||||||||| || | ||||||||||||||
Sbjct: 297 acctttccgggacggggtagtccgggaagaacttgcggagcgtcctgacgacgtcctcgc 356
Query: 539 ggtggagcacgg---cgtcggcgcagatgtagcggccggcggcg 579
|||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 357 ggtggagcacggcgccgtcggcgcagatgtaccggccggcggcg 400
>gb|CW346174.1|CW346174 104_849_11488883_148_36218_040 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11488883, DNA
sequence
Length = 735
Score = 123 bits (62), Expect = 2e-026
Identities = 94/104 (90%), Gaps = 3/104 (2%)
Strand = Plus / Minus
Query: 479 acctctccgggacggggtagcccgggaaggacttgcggagggtgcggacgacgtcctcgc 538
|||| ||||||||||||||| |||||||| |||||||||| || | ||||||||||||||
Sbjct: 672 acctttccgggacggggtagtccgggaagaacttgcggagcgtcctgacgacgtcctcgc 613
Query: 539 ggtggagcacgg---cgtcggcgcagatgtagcggccggcggcg 579
|||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 612 ggtggagcacggcgccgtcggcgcagatgtaccggccggcggcg 569
>gb|CW480229.1|CW480229 fsbb001f239d02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f239d02, DNA
sequence
Length = 573
Score = 123 bits (62), Expect = 2e-026
Identities = 94/104 (90%), Gaps = 3/104 (2%)
Strand = Plus / Minus
Query: 479 acctctccgggacggggtagcccgggaaggacttgcggagggtgcggacgacgtcctcgc 538
|||| ||||||||||||||| |||||||| |||||||||| || | ||||||||||||||
Sbjct: 528 acctttccgggacggggtagtccgggaagaacttgcggagcgtcctgacgacgtcctcgc 469
Query: 539 ggtggagcacgg---cgtcggcgcagatgtagcggccggcggcg 579
|||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 468 ggtggagcacggcgccgtcggcgcagatgtaccggccggcggcg 425
>gb|CW480230.1|CW480230 fsbb001f239d02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f239d02, DNA
sequence
Length = 681
Score = 123 bits (62), Expect = 2e-026
Identities = 94/104 (90%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 479 acctctccgggacggggtagcccgggaaggacttgcggagggtgcggacgacgtcctcgc 538
|||| ||||||||||||||| |||||||| |||||||||| || | ||||||||||||||
Sbjct: 271 acctttccgggacggggtagtccgggaagaacttgcggagcgtcctgacgacgtcctcgc 330
Query: 539 ggtggagcacgg---cgtcggcgcagatgtagcggccggcggcg 579
|||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 331 ggtggagcacggcgccgtcggcgcagatgtaccggccggcggcg 374
>gb|CN138460.1|CN138460 OX1_64_A03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_64_A03_A002 3', mRNA sequence
Length = 747
Score = 123 bits (62), Expect = 2e-026
Identities = 125/146 (85%)
Strand = Plus / Minus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacctctccgg 488
|||||| |||| ||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct: 371 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggagcacctggtggg 312
Query: 489 gacggggtagcccgggaaggacttgcggagggtgcggacgacgtcctcgcggtggagcac 548
||||||||| | |||||| |||| |||||||||||||||||||||||||||||| ||
Sbjct: 311 gacggggtactcggggaagagcttggcgagggtgcggacgacgtcctcgcggtggaggac 252
Query: 549 ggcgtcggcgcagatgtagcggccgg 574
| |||||||||| ||| |||||||
Sbjct: 251 gcgctcggcgcagaggtatcggccgg 226
>gb|BG051912.1|BG051912 RHIZ2_6_E04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 555
Score = 121 bits (61), Expect = 8e-026
Identities = 145/173 (83%)
Strand = Plus / Minus
Query: 402 gaactccaggcccagctccctcagccgctggttggagatcttgtacggctgcttcctcgg 461
||||||||||||||| |||| ||| |||||| |||| |||||||| |||||||| |||
Sbjct: 235 gaactccaggcccaggtcccggagcttctggttcgagaacttgtacgcctgcttccgcgg 176
Query: 462 gttcacctcgtcagagcacctctccgggacggggtagcccgggaaggacttgcggagggt 521
|||||||||||| |||||||| ||||||||||| | |||||| |||| |||| |
Sbjct: 175 gttcacctcgtcggagcacctggtggggacggggtactcggggaagagcttggcgaggat 116
Query: 522 gcggacgacgtcctcgcggtggagcacggcgtcggcgcagatgtagcggccgg 574
|||||||||||||||||||||||| ||| |||||||||| ||| |||||||
Sbjct: 115 gcggacgacgtcctcgcggtggaggacgcgctcggcgcagaggtatcggccgg 63
>gb|AW678856.1|AW678856 WS1_1_A12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA
sequence
Length = 565
Score = 115 bits (58), Expect = 5e-024
Identities = 124/146 (84%)
Strand = Plus / Minus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacctctccgg 488
|||||| |||| ||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct: 189 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggagcacctggtggg 130
Query: 489 gacggggtagcccgggaaggacttgcggagggtgcggacgacgtcctcgcggtggagcac 548
||||||||| | |||||| |||| |||| ||||||||||||||||||||||||| ||
Sbjct: 129 gacggggtactcggggaagagcttggcgaggatgcggacgacgtcctcgcggtggaggac 70
Query: 549 ggcgtcggcgcagatgtagcggccgg 574
| |||||||||| ||| |||||||
Sbjct: 69 gcgctcggcgcagaggtatcggccgg 44
>gb|BE360923.1|BE360923 DG1_67_G03.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 642
Score = 115 bits (58), Expect = 5e-024
Identities = 124/146 (84%)
Strand = Plus / Minus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacctctccgg 488
|||||| |||| ||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct: 291 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggagcacctggtggg 232
Query: 489 gacggggtagcccgggaaggacttgcggagggtgcggacgacgtcctcgcggtggagcac 548
||||||||| | |||||| |||| |||| ||||||||||||||||||||||||| ||
Sbjct: 231 gacggggtactcggggaagagcttggcgaggatgcggacgacgtcctcgcggtggaggac 172
Query: 549 ggcgtcggcgcagatgtagcggccgg 574
| |||||||||| ||| |||||||
Sbjct: 171 gcgctcggcgcagaggtatcggccgg 146
>gb|BE362142.1|BE362142 DG1_84_C11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 698
Score = 115 bits (58), Expect = 5e-024
Identities = 124/146 (84%)
Strand = Plus / Minus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacctctccgg 488
|||||| |||| ||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct: 345 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggagcacctggtggg 286
Query: 489 gacggggtagcccgggaaggacttgcggagggtgcggacgacgtcctcgcggtggagcac 548
||||||||| | |||||| |||| |||| ||||||||||||||||||||||||| ||
Sbjct: 285 gacggggtactcggggaagagcttggcgaggatgcggacgacgtcctcgcggtggaggac 226
Query: 549 ggcgtcggcgcagatgtagcggccgg 574
| |||||||||| ||| |||||||
Sbjct: 225 gcgctcggcgcagaggtatcggccgg 200
>gb|BE362152.1|BE362152 DG1_84_D11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 678
Score = 115 bits (58), Expect = 5e-024
Identities = 124/146 (84%)
Strand = Plus / Minus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacctctccgg 488
|||||| |||| ||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct: 324 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggagcacctggtggg 265
Query: 489 gacggggtagcccgggaaggacttgcggagggtgcggacgacgtcctcgcggtggagcac 548
||||||||| | |||||| |||| |||| ||||||||||||||||||||||||| ||
Sbjct: 264 gacggggtactcggggaagagcttggcgaggatgcggacgacgtcctcgcggtggaggac 205
Query: 549 ggcgtcggcgcagatgtagcggccgg 574
| |||||||||| ||| |||||||
Sbjct: 204 gcgctcggcgcagaggtatcggccgg 179
>gb|CD228671.1|CD228671 CCC1_9_E11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_9_E11_A007 3', mRNA sequence
Length = 535
Score = 115 bits (58), Expect = 5e-024
Identities = 124/146 (84%)
Strand = Plus / Minus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacctctccgg 488
|||||| |||| ||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct: 161 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggagcacctggtggg 102
Query: 489 gacggggtagcccgggaaggacttgcggagggtgcggacgacgtcctcgcggtggagcac 548
||||||||| | |||||| |||| |||| ||||||||||||||||||||||||| ||
Sbjct: 101 gacggggtactcggggaagagcttggcgaggatgcggacgacgtcctcgcggtggaggac 42
Query: 549 ggcgtcggcgcagatgtagcggccgg 574
| |||||||||| ||| |||||||
Sbjct: 41 gcgctcggcgcagaggtatcggccgg 16
>gb|CN129192.1|CN129192 RHOH1_34_B10.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_34_B10_A002 3', mRNA sequence
Length = 795
Score = 115 bits (58), Expect = 5e-024
Identities = 124/146 (84%)
Strand = Plus / Minus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacctctccgg 488
|||||| |||| ||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct: 328 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggagcacctggtggg 269
Query: 489 gacggggtagcccgggaaggacttgcggagggtgcggacgacgtcctcgcggtggagcac 548
||||||||| | |||||| |||| |||| ||||||||||||||||||||||||| ||
Sbjct: 268 gacggggtactcggggaagagcttggcgaggatgcggacgacgtcctcgcggtggaggac 209
Query: 549 ggcgtcggcgcagatgtagcggccgg 574
| |||||||||| ||| |||||||
Sbjct: 208 gcgctcggcgcagaggtatcggccgg 183
>gb|BQ479088.1|BQ479088 pRC-1207 pRC Sorghum halepense cDNA 5', mRNA sequence
Length = 447
Score = 111 bits (56), Expect = 7e-023
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 332 cagggagagggaggatgcccttctcctggaagcacacgacggtgtcgtacagcgcctgcg 391
|||||| ||||| ||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct: 351 cagggatagggatgatgcccttctcctggaagcatatgacggtgtcgtacagggcctgcg 410
Query: 392 ccgccggggtgaactccaggccca 415
||||||| |||||||||| |||||
Sbjct: 411 ccgccggagtgaactccaagccca 434
>gb|BM318321.1|BM318321 PI1_77_C02.g9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 514
Score = 109 bits (55), Expect = 3e-022
Identities = 123/146 (84%)
Strand = Plus / Minus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacctctccgg 488
|||||| |||| ||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct: 165 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggagcacctggtggg 106
Query: 489 gacggggtagcccgggaaggacttgcggagggtgcggacgacgtcctcgcggtggagcac 548
||||||||| | |||||| |||| |||| ||||||||||||||||||||||||| ||
Sbjct: 105 gacggggtactcggggaagagcttggcgaggatgcggacgacgtcctcgcggtggaggac 46
Query: 549 ggcgtcggcgcagatgtagcggccgg 574
| |||||||| | ||| |||||||
Sbjct: 45 gcgctcggcgcanaggtatcggccgg 20
>gb|BE360762.1|BE360762 DG1_66_C04.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 552
Score = 107 bits (54), Expect = 1e-021
Identities = 123/146 (84%)
Strand = Plus / Minus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacctctccgg 488
|||||| |||| ||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct: 216 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggagcacctggtggg 157
Query: 489 gacggggtagcccgggaaggacttgcggagggtgcggacgacgtcctcgcggtggagcac 548
||||||||| | |||||| |||| |||| ||||||||||||||||||||||||| ||
Sbjct: 156 gacggggtactcggggaagagcttggcgaggatgcggacgacgtcctcgcggtggaggac 97
Query: 549 ggcgtcggcgcagatgtagcggccgg 574
| |||||||| | ||| |||||||
Sbjct: 96 gcgctcggcgcaaaggtatcggccgg 71
>gb|CN137446.1|CN137446 OX1_57_G07.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_57_G07_A002 3', mRNA sequence
Length = 532
Score = 107 bits (54), Expect = 1e-021
Identities = 123/146 (84%)
Strand = Plus / Minus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacctctccgg 488
|||||| |||| ||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct: 165 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggagcacctggtggg 106
Query: 489 gacggggtagcccgggaaggacttgcggagggtgcggacgacgtcctcgcggtggagcac 548
||||||||| | |||||| |||| |||| ||||||||||||||||||||||||| ||
Sbjct: 105 gacggggtactcggggaagagcttggcgaggatgcggacgacgtcctcgcggtggaggac 46
Query: 549 ggcgtcggcgcagatgtagcggccgg 574
| |||||||| | ||| |||||||
Sbjct: 45 gcgctcggcgcacaggtatcggccgg 20
>gb|CX608225.1|CX608225 ANR1_37_H09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_37_H09_A002 3', mRNA sequence
Length = 560
Score = 107 bits (54), Expect = 1e-021
Identities = 123/146 (84%)
Strand = Plus / Minus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacctctccgg 488
|||||| |||| ||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct: 185 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggagcacctggtggg 126
Query: 489 gacggggtagcccgggaaggacttgcggagggtgcggacgacgtcctcgcggtggagcac 548
||||||||| | |||||| |||| |||| ||||||||||||||||||||||||| ||
Sbjct: 125 gacggggtactcggggaagagcttggcgaggatgcggacgacgtcctcgcggtggaggac 66
Query: 549 ggcgtcggcgcagatgtagcggccgg 574
| |||||||| | ||| |||||||
Sbjct: 65 gcgctcggcgcataggtatcggccgg 40
>gb|CN137561.1|CN137561 OX1_58_D03.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_58_D03_A002 3', mRNA sequence
Length = 483
Score = 105 bits (53), Expect = 4e-021
Identities = 101/117 (86%)
Strand = Plus / Minus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacctctccgg 488
|||||| |||| ||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct: 117 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggagcacctggtggg 58
Query: 489 gacggggtagcccgggaaggacttgcggagggtgcggacgacgtcctcgcggtggag 545
||||||||| | |||||| ||||| ||| |||||||||||||||||||||||||
Sbjct: 57 gacggggtactcggggaagaacttggcaaggatgcggacgacgtcctcgcggtggag 1
>gb|CX607016.1|CX607016 ANR1_6_E09.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_E09_A002 3', mRNA sequence
Length = 667
Score = 99.6 bits (50), Expect = 3e-019
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacctctccgg 488
|||||| |||| ||||||||||||||||| ||||||||||||||| || ||||| ||
Sbjct: 292 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggaacacctggtggg 233
Query: 489 gacggggtagcccgggaaggacttgcggagggtgcggacgacgtcctcgcggtggagcac 548
||||||||| | |||||| |||| |||| ||||||||||||||||||||||||| ||
Sbjct: 232 gacggggtactcggggaagagcttggcgaggatgcggacgacgtcctcgcggtggaggac 173
Query: 549 ggcgtcggcgcagatgtagcggccgg 574
| |||||||| | ||| |||||||
Sbjct: 172 gcgctcggcgcaaaggtatcggccgg 147
>gb|CX608520.1|CX608520 ANR1_39_C06.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_39_C06_A002 3', mRNA sequence
Length = 491
Score = 85.7 bits (43), Expect = 4e-015
Identities = 91/107 (85%)
Strand = Plus / Minus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacctctccgg 488
|||||| |||| ||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct: 107 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggagcacctggtggg 48
Query: 489 gacggggtagcccgggaaggacttgcggagggtgcggacgacgtcct 535
||||||||| | |||||| |||| |||| |||||||||||||||
Sbjct: 47 gacggggtactcggggaagagcttggcgaggatgcggacgacgtcct 1
>gb|CW393089.1|CW393089 fsbb001f079p24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f079p24, DNA
sequence
Length = 542
Score = 75.8 bits (38), Expect = 4e-012
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacct 482
|||||| |||| ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 229 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggagcacct 176
>gb|CW486807.1|CW486807 fsbb001f252e20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252e20, DNA
sequence
Length = 678
Score = 75.8 bits (38), Expect = 4e-012
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacct 482
|||||| |||| ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 292 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggagcacct 345
>gb|CW486808.1|CW486808 fsbb001f252e20k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252e20, DNA
sequence
Length = 644
Score = 75.8 bits (38), Expect = 4e-012
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacct 482
|||||| |||| ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 583 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggagcacct 530
>gb|BI141372.1|BI141372 IP1_55_B03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 522
Score = 75.8 bits (38), Expect = 4e-012
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacct 482
|||||| |||| ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 146 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggagcacct 93
>gb|CB927052.1|CB927052 ABA1_13_F08.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_13_F08_A012 3', mRNA sequence
Length = 472
Score = 75.8 bits (38), Expect = 4e-012
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacct 482
|||||| |||| ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 98 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggagcacct 45
>gb|CN125480.1|CN125480 RHOH1_11_G11.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_11_G11_A002 3', mRNA sequence
Length = 474
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 429 ctggttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacct 482
|||||| |||| ||||||||||||||||| ||||||||||||||| || |||||
Sbjct: 98 ctggttcgagaacttgtacggctgcttccgcgggttcacctcgtcggaacacct 45
>gb|CW047969.1|CW047969 104_285_10512975_114_30216 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512975, DNA
sequence
Length = 580
Score = 65.9 bits (33), Expect = 4e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 376 tcgtacagcgcctgcgccgccggggtgaactccaggcccagctccctcagccgctggttg 435
||||| || |||||||| | ||| |||||||| ||||||| ||||||||||||| |||||
Sbjct: 482 tcgtagagggcctgcgctggcggagtgaactcgaggcccaactccctcagccgccggttg 541
Query: 436 gagatcttgtacg 448
|| |||| |||||
Sbjct: 542 gatatctcgtacg 554
>gb|CW047970.1|CW047970 104_285_10512975_115_30217 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10512975, DNA
sequence
Length = 581
Score = 65.9 bits (33), Expect = 4e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 376 tcgtacagcgcctgcgccgccggggtgaactccaggcccagctccctcagccgctggttg 435
||||| || |||||||| | ||| |||||||| ||||||| ||||||||||||| |||||
Sbjct: 496 tcgtagagggcctgcgctggcggagtgaactcgaggcccaactccctcagccgccggttg 437
Query: 436 gagatcttgtacg 448
|| |||| |||||
Sbjct: 436 gatatctcgtacg 424
>gb|CW351828.1|CW351828 fsbb001f013m09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f013m09, DNA
sequence
Length = 675
Score = 65.9 bits (33), Expect = 4e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 376 tcgtacagcgcctgcgccgccggggtgaactccaggcccagctccctcagccgctggttg 435
||||| || |||||||| | ||| |||||||| ||||||| ||||||||||||| |||||
Sbjct: 599 tcgtagagggcctgcgctggcggagtgaactcgaggcccaactccctcagccgccggttg 540
Query: 436 gagatcttgtacg 448
|| |||| |||||
Sbjct: 539 gatatctcgtacg 527
>gb|BZ342273.1|BZ342273 ic81e11.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ic81e11 5', DNA sequence
Length = 605
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 400 gtgaactccaggcccagctccctcagccgctggttggagatcttgtacggct 451
|||||||||| |||||| ||||| |||| ||||||||||| |||| ||||||
Sbjct: 304 gtgaactccaagcccaggtccctgagcctctggttggagaacttgaacggct 355
>gb|CW317851.1|CW317851 104_809_11473636_148_35864_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473636, DNA
sequence
Length = 745
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 400 gtgaactccaggcccagctccctcagccgctggttggagatcttgtacggct 451
|||||||||| |||||| ||||| |||| ||||||||||| |||| ||||||
Sbjct: 177 gtgaactccaagcccaggtccctgagcctctggttggagaacttgaacggct 228
>gb|CW377685.1|CW377685 fsbb001f056b22k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f056b22, DNA
sequence
Length = 508
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 400 gtgaactccaggcccagctccctcagccgctggttggagatcttgtacggct 451
|||||||||| |||||| ||||| |||| ||||||||||| |||| ||||||
Sbjct: 293 gtgaactccaagcccaggtccctgagcctctggttggagaacttgaacggct 344
>gb|CW408710.1|CW408710 fsbb001f102l13f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f102l13, DNA
sequence
Length = 577
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 400 gtgaactccaggcccagctccctcagccgctggttggagatcttgtacggct 451
|||||||||| |||||| ||||| |||| ||||||||||| |||| ||||||
Sbjct: 274 gtgaactccaagcccaggtccctgagcctctggttggagaacttgaacggct 325
>gb|CW202633.1|CW202633 104_628_11185195_148_37085_066 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11185195, DNA
sequence
Length = 711
Score = 44.1 bits (22), Expect = 0.014
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 332 cagggagagggaggatgcccttctcctgga 361
|||||| ||||| |||||||||||||||||
Sbjct: 668 cagggatagggatgatgcccttctcctgga 697
>gb|BZ351615.1|BZ351615 hw04e11.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hw04e11 5', DNA sequence
Length = 624
Score = 40.1 bits (20), Expect = 0.22
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 400 gtgaactccaggcccagctccctcagccgctggttggagatcttgtacggct 451
||||| |||| |||||| || || |||| ||||||||||| | |||||||||
Sbjct: 125 gtgaattccaagcccaggtctctgagcctctggttggagaacctgtacggct 176
>gb|CW317762.1|CW317762 104_809_11473586_148_35864_003 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11473586, DNA
sequence
Length = 478
Score = 40.1 bits (20), Expect = 0.22
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 400 gtgaactccaggcccagctccctcagccgctggttggagatcttgtacggct 451
||||| |||| |||||| | ||| |||| ||||||||||| |||| ||||||
Sbjct: 178 gtgaattccaagcccaggttcctgagcctctggttggagaacttgaacggct 229
>gb|CW331425.1|CW331425 104_828_11480895_148_36020_052 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11480895, DNA
sequence
Length = 649
Score = 40.1 bits (20), Expect = 0.22
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 400 gtgaactccaggcccagctccctcagccgctggttggagatcttgtacggct 451
||||| |||| |||||| || || |||| ||||||||||| | |||||||||
Sbjct: 107 gtgaattccaagcccaggtctctgagcctctggttggagaacctgtacggct 56
>gb|CW491513.1|CW491513 fsbb001f281g15f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f281g15, DNA
sequence
Length = 685
Score = 40.1 bits (20), Expect = 0.22
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 400 gtgaactccaggcccagctccctcagccgctggttggagatcttgtacggct 451
||||| |||| |||||| || || |||| ||||||||||| | |||||||||
Sbjct: 357 gtgaattccaagcccaggtctctgagcctctggttggagaacctgtacggct 306
>gb|CF070740.1|CF070740 FE1_4_B05.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_4_B05_A002 3', mRNA sequence
Length = 503
Score = 40.1 bits (20), Expect = 0.22
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 400 gtgaactccaggcccagctccctcagccgctggttggagatcttgtacggct 451
||||| |||| |||||| || || |||| ||||||||||| | |||||||||
Sbjct: 349 gtgaattccaagcccaggtctctgagcctctggttggagaacctgtacggct 298
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 186,550
Number of Sequences: 832831
Number of extensions: 186550
Number of successful extensions: 56113
Number of sequences better than 0.5: 45
Number of HSP's better than 0.5 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56002
Number of HSP's gapped (non-prelim): 90
length of query: 581
length of database: 491,359,669
effective HSP length: 19
effective length of query: 562
effective length of database: 475,535,880
effective search space: 267251164560
effective search space used: 267251164560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)