BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2623051.2.1
(991 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG158327.1|BG158327 EM1_12_H04.b1_A002 Embryo 1 (EM1) So... 311 7e-083
gb|CW163093.1|CW163093 104_570_11151283_116_36445_070 Sorgh... 161 2e-037
gb|CW429387.1|CW429387 fsbb001f142j21k0 Sorghum methylation... 161 2e-037
gb|CW433996.1|CW433996 fsbb001f149h18k0 Sorghum methylation... 161 2e-037
gb|CW458828.1|CW458828 fsbb001f205e19f0 Sorghum methylation... 161 2e-037
gb|CW481408.1|CW481408 fsbb001f240p09k0 Sorghum methylation... 161 2e-037
gb|CW056974.1|CW056974 104_298_10517969_115_30157 Sorghum m... 155 9e-036
gb|BZ334682.1|BZ334682 hx80h06.g1 WGS-SbicolorF (JM107 adap... 123 3e-026
gb|CW101251.1|CW101251 104_469_11004541_116_34404_063 Sorgh... 123 3e-026
gb|CW163094.1|CW163094 104_570_11151283_148_36446_070 Sorgh... 123 3e-026
gb|CW429386.1|CW429386 fsbb001f142j21f0 Sorghum methylation... 123 3e-026
gb|CW132345.1|CW132345 104_515_11116162_116_34799_037 Sorgh... 119 5e-025
gb|BZ347625.1|BZ347625 ho31b03.b1 WGS-SbicolorF (JM107 adap... 111 1e-022
gb|CW324049.1|CW324049 104_818_11476950_148_35907_023 Sorgh... 111 1e-022
gb|CW352347.1|CW352347 fsbb001f014j06k0 Sorghum methylation... 111 1e-022
gb|CW433995.1|CW433995 fsbb001f149h18f0 Sorghum methylation... 111 1e-022
gb|CW481407.1|CW481407 fsbb001f240p09f0 Sorghum methylation... 111 1e-022
gb|BG560269.1|BG560269 RHIZ2_72_B09.b1_A003 Rhizome2 (RHIZ2... 105 8e-021
gb|CN123943.1|CN123943 RHOH1_1_D12.g1_A002 Acid- and alkali... 96 7e-018
gb|CN140768.1|CN140768 OX1_46_H12.g1_A002 Oxidatively-stres... 96 7e-018
gb|CW483405.1|CW483405 fsbb001f245a14f0 Sorghum methylation... 82 1e-013
gb|CW068677.1|CW068677 104_317_10525246_1_30096 Sorghum met... 74 3e-011
gb|CW115976.1|CW115976 104_491_11106855_148_34596_058 Sorgh... 74 3e-011
gb|CW119569.1|CW119569 104_496_11108842_148_34633_037 Sorgh... 74 3e-011
gb|CW177733.1|CW177733 104_591_11159186_116_36610_011 Sorgh... 74 3e-011
gb|CW177734.1|CW177734 104_591_11159186_148_36609_011 Sorgh... 74 3e-011
gb|CW180886.1|CW180886 104_595_11163195_116_36641_006 Sorgh... 74 3e-011
gb|CW180887.1|CW180887 104_595_11163195_148_36645_006 Sorgh... 74 3e-011
gb|CW243252.1|CW243252 104_703_11219878_148_37569_087 Sorgh... 74 3e-011
gb|CW362187.1|CW362187 fsbb001f033c05f0 Sorghum methylation... 74 3e-011
gb|CW483406.1|CW483406 fsbb001f245a14k0 Sorghum methylation... 74 3e-011
gb|BF420979.1|BF420979 FM1_5_G02.g1_A003 Floral-Induced Mer... 74 3e-011
gb|BF421886.1|BF421886 FM1_16_F06.g1_A003 Floral-Induced Me... 74 3e-011
gb|CN123855.1|CN123855 RHOH1_1_D12.b1_A002 Acid- and alkali... 74 3e-011
gb|CW111273.1|CW111273 104_484_11104216_116_34532_056 Sorgh... 70 4e-010
gb|BF655994.1|BF655994 FM1_42_F02.b1_A003 Floral-Induced Me... 70 4e-010
gb|CD430993.1|CD430993 ETH1_6_F10.b1_A002 Ethylene-treated ... 70 4e-010
gb|BZ352342.1|BZ352342 ho31b03.g1 WGS-SbicolorF (JM107 adap... 66 7e-009
gb|CL197703.1|CL197703 104_424_10943914_114_32334_033 Sorgh... 58 2e-006
gb|CW082645.1|CW082645 104_424_10943914_114_32383_033 Sorgh... 58 2e-006
gb|CW188123.1|CW188123 104_607_11172854_148_36727_051 Sorgh... 58 2e-006
gb|CW198874.1|CW198874 104_623_11183207_116_36840_084 Sorgh... 58 2e-006
gb|CW467089.1|CW467089 fsbb001f218k03k0 Sorghum methylation... 58 2e-006
gb|CF486168.1|CF486168 POL1_36_D06.b1_A002 Pollen Sorghum b... 58 2e-006
gb|CN146978.1|CN146978 WOUND1_46_C04.b1_A002 Wounded leaves... 58 2e-006
gb|CN147029.1|CN147029 WOUND1_46_C04.g1_A002 Wounded leaves... 58 2e-006
gb|CW036224.1|CW036224 104_267_10503634_115_30375 Sorghum m... 54 3e-005
gb|CW188122.1|CW188122 104_607_11172854_116_36728_051 Sorgh... 48 0.002
gb|CF483095.1|CF483095 POL1_11_F04.b1_A002 Pollen Sorghum b... 48 0.002
gb|CW180936.1|CW180936 104_595_11163223_116_36639_020 Sorgh... 46 0.006
gb|CL177652.1|CL177652 104_385_10893980_116_31914_044 Sorgh... 44 0.024
gb|CL195531.1|CL195531 104_421_10942443_114_32310_016 Sorgh... 44 0.024
gb|CW037026.1|CW037026 104_268_10504100_114_30381 Sorghum m... 44 0.024
gb|CW146601.1|CW146601 104_539_11139079_148_34984_022 Sorgh... 44 0.024
gb|CW165398.1|CW165398 104_573_11152484_116_36471_068 Sorgh... 44 0.024
gb|CW251362.1|CW251362 104_714_11223891_116_35066_016 Sorgh... 44 0.024
gb|CW287322.1|CW287322 104_765_11411355_116_35523_010 Sorgh... 44 0.024
gb|CW287323.1|CW287323 104_765_11411355_148_35527_010 Sorgh... 44 0.024
gb|CW464299.1|CW464299 fsbb001f213h11f0 Sorghum methylation... 44 0.024
gb|CD219998.1|CD219998 CCC1_60_C06.b1_A007 Callus culture/c... 44 0.024
gb|CN149544.1|CN149544 WOUND1_63_A05.g1_A002 Wounded leaves... 44 0.024
gb|BZ350881.1|BZ350881 ht61h04.g1 WGS-SbicolorF (JM107 adap... 42 0.096
gb|BZ629042.1|BZ629042 ih63h03.b1 WGS-SbicolorF (DH5a methy... 42 0.096
gb|CL164384.1|CL164384 104_358_10807870_116_31815_238 Sorgh... 42 0.096
gb|CL196419.1|CL196419 104_422_10943045_114_32345_021 Sorgh... 42 0.096
gb|CW082012.1|CW082012 104_422_10943045_114_32316_021 Sorgh... 42 0.096
gb|CW083553.1|CW083553 104_425_10944296_116_32355_018 Sorgh... 42 0.096
gb|CW090160.1|CW090160 104_435_10949122_114_32597_033 Sorgh... 42 0.096
gb|CW090161.1|CW090161 104_435_10949122_116_32599_033 Sorgh... 42 0.096
gb|CW167770.1|CW167770 104_577_11153779_116_36491_078 Sorgh... 42 0.096
gb|CW172667.1|CW172667 104_584_11156413_148_36542_063 Sorgh... 42 0.096
gb|CW267399.1|CW267399 104_737_11400713_116_35291_069 Sorgh... 42 0.096
gb|CW309979.1|CW309979 104_799_11469475_116_37434_080 Sorgh... 42 0.096
gb|CW309980.1|CW309980 104_799_11469475_148_37433_080 Sorgh... 42 0.096
gb|CW372908.1|CW372908 fsbb001f049a14f0 Sorghum methylation... 42 0.096
gb|CW372909.1|CW372909 fsbb001f049a14k0 Sorghum methylation... 42 0.096
gb|CW398949.1|CW398949 fsbb001f088j18f0 Sorghum methylation... 42 0.096
gb|CW424919.1|CW424919 fsbb001f135h21f0 Sorghum methylation... 42 0.096
gb|CW427240.1|CW427240 fsbb001f139c03k0 Sorghum methylation... 42 0.096
gb|CW451937.1|CW451937 fsbb001f192d20f0 Sorghum methylation... 42 0.096
gb|CW476981.1|CW476981 fsbb001f234b14f0 Sorghum methylation... 42 0.096
gb|CW786848.1|CW786848 SP__Ba0028A12.r SP__Ba Sorghum propi... 42 0.096
gb|CB926480.1|CB926480 ABA1_9_D03.g1_A012 Abscisic acid-tre... 42 0.096
gb|CB927154.1|CB927154 ABA1_13_B04.g1_A012 Abscisic acid-tr... 42 0.096
gb|CD427804.1|CD427804 ETH1_34_F11.g1_A002 Ethylene-treated... 42 0.096
gb|CD428998.1|CD428998 ETH1_1_B10.g1_A002 Ethylene-treated ... 42 0.096
gb|CF430507.1|CF430507 PH1_28_A04.g1_A002 Phosphorous-defic... 42 0.096
gb|CF431488.1|CF431488 NIT1_7_B08.g1_A002 Nitrogen-deficien... 42 0.096
gb|CN132983.1|CN132983 OX1_9_A02.g1_A002 Oxidatively-stress... 42 0.096
gb|CN140707.1|CN140707 OX1_46_H12.b1_A002 Oxidatively-stres... 42 0.096
gb|BZ366836.1|BZ366836 ic99f07.b1 WGS-SbicolorF (JM107 adap... 40 0.38
gb|BZ412898.1|BZ412898 181g10_68 Subclones from BAC clones ... 40 0.38
gb|CL173217.1|CL173217 104_376_10890724_116_31795_244 Sorgh... 40 0.38
gb|CL178929.1|CL178929 104_387_10894937_116_31906_233 Sorgh... 40 0.38
gb|CL178930.1|CL178930 104_387_10894937_148_31905_233 Sorgh... 40 0.38
gb|CW050181.1|CW050181 104_289_10514495_114_30197 Sorghum m... 40 0.38
gb|CW050182.1|CW050182 104_289_10514495_115_30204 Sorghum m... 40 0.38
gb|CW069232.1|CW069232 104_319_10525781_5_30099 Sorghum met... 40 0.38
gb|CW121055.1|CW121055 104_498_11109679_116_34651_020 Sorgh... 40 0.38
gb|CW121056.1|CW121056 104_498_11109679_148_34655_020 Sorgh... 40 0.38
gb|CW270128.1|CW270128 104_741_11402240_116_35325_022 Sorgh... 40 0.38
gb|CW377881.1|CW377881 fsbb001f056g10k0 Sorghum methylation... 40 0.38
gb|CW423861.1|CW423861 fsbb001f133o08f0 Sorghum methylation... 40 0.38
gb|CW461514.1|CW461514 fsbb001f209d12k0 Sorghum methylation... 40 0.38
gb|CW482401.1|CW482401 fsbb001f242h14f0 Sorghum methylation... 40 0.38
gb|BE363896.1|BE363896 PI1_10_H05.b1_A002 Pathogen induced ... 40 0.38
gb|BG357312.1|BG357312 OV2_12_D02.b1_A002 Ovary 2 (OV2) Sor... 40 0.38
>gb|BG158327.1|BG158327 EM1_12_H04.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 443
Score = 311 bits (157), Expect = 7e-083
Identities = 190/201 (94%)
Strand = Plus / Minus
Query: 721 ggaggaggatgacggcggcgacgcgtcctccgcgccgttgtccctcagccccagcagctc 780
||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 390 ggaggaggaagacggcgacgacgcgtcctccgccccgttgtccctcagccccagcagctc 331
Query: 781 cagcgccttgttcccggaatccaccgtggtcacttggtaagacgagctcttgagcagcat 840
|||||||||| |||||||||||||||||||||||||||| |||||| ||||||| |||||
Sbjct: 330 cagcgccttgctcccggaatccaccgtggtcacttggtaggacgagttcttgaggagcat 271
Query: 841 ctcgatgagcttcctgtcgatgatgctgtcgtccaccgccaggacatggaaccgcgactc 900
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 270 ctcgatgagcttcctgtcgacgatgctgtcgtccaccgcgaggacatggaaccgcgactc 211
Query: 901 ggcgtccagcaccgtcatggc 921
||| |||| ||||||||||||
Sbjct: 210 ggcatccaccaccgtcatggc 190
Score = 101 bits (51), Expect = 1e-019
Identities = 57/59 (96%)
Strand = Plus / Minus
Query: 647 ggcatgcagtagtcagtgatgatgagactcacgtcgatctcctgatggtcaggggagga 705
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 443 ggcatgcagtagtcagtgatgatgagattcacgtcgatctcctggtggtcaggggagga 385
>gb|CW163093.1|CW163093 104_570_11151283_116_36445_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151283, DNA
sequence
Length = 691
Score = 161 bits (81), Expect = 2e-037
Identities = 102/109 (93%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||||| |||||| ||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 292 cttggtaggacgagttcttgaggagcatctcgatgagcttcctgtcgacgatgctgtcgt 233
Query: 873 ccaccgccaggacatggaaccgcgactcggcgtccagcaccgtcatggc 921
||||||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 232 ccaccgcgaggacatggaaccgcgactcggcatccaccaccgtcatggc 184
Score = 155 bits (78), Expect = 9e-036
Identities = 90/94 (95%)
Strand = Plus / Minus
Query: 721 ggaggaggatgacggcggcgacgcgtcctccgcgccgttgtccctcagccccagcagctc 780
||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 562 ggaggaggaagacggcgacgacgcgtcctccgccccgttgtccctcagccccagcagctc 503
Query: 781 cagcgccttgttcccggaatccaccgtggtcact 814
|||||||||| |||||||||||||||||||||||
Sbjct: 502 cagcgccttgctcccggaatccaccgtggtcact 469
>gb|CW429387.1|CW429387 fsbb001f142j21k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f142j21, DNA
sequence
Length = 665
Score = 161 bits (81), Expect = 2e-037
Identities = 102/109 (93%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||||| |||||| ||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 114 cttggtaggacgagttcttgaggagcatctcgatgagcttcctgtcgacgatgctgtcgt 55
Query: 873 ccaccgccaggacatggaaccgcgactcggcgtccagcaccgtcatggc 921
||||||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 54 ccaccgcgaggacatggaaccgcgactcggcatccaccaccgtcatggc 6
Score = 155 bits (78), Expect = 9e-036
Identities = 90/94 (95%)
Strand = Plus / Minus
Query: 721 ggaggaggatgacggcggcgacgcgtcctccgcgccgttgtccctcagccccagcagctc 780
||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 384 ggaggaggaagacggcgacgacgcgtcctccgccccgttgtccctcagccccagcagctc 325
Query: 781 cagcgccttgttcccggaatccaccgtggtcact 814
|||||||||| |||||||||||||||||||||||
Sbjct: 324 cagcgccttgctcccggaatccaccgtggtcact 291
Score = 123 bits (62), Expect = 3e-026
Identities = 68/70 (97%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgatgagactcacgt 680
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 582 tgagcagatcgtatcctgtcatgcctggcatgcagtagtcagtgatgatgagattcacgt 523
Query: 681 cgatctcctg 690
||||||||||
Sbjct: 522 cgatctcctg 513
>gb|CW433996.1|CW433996 fsbb001f149h18k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f149h18, DNA
sequence
Length = 576
Score = 161 bits (81), Expect = 2e-037
Identities = 102/109 (93%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||||| |||||| ||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 269 cttggtaggacgagttcttgaggagcatctcgatgagcttcctgtcgacgatgctgtcgt 210
Query: 873 ccaccgccaggacatggaaccgcgactcggcgtccagcaccgtcatggc 921
||||||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 209 ccaccgcgaggacatggaaccgcgactcggcatccaccaccgtcatggc 161
Score = 155 bits (78), Expect = 9e-036
Identities = 90/94 (95%)
Strand = Plus / Minus
Query: 721 ggaggaggatgacggcggcgacgcgtcctccgcgccgttgtccctcagccccagcagctc 780
||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 539 ggaggaggaagacggcgacgacgcgtcctccgccccgttgtccctcagccccagcagctc 480
Query: 781 cagcgccttgttcccggaatccaccgtggtcact 814
|||||||||| |||||||||||||||||||||||
Sbjct: 479 cagcgccttgctcccggaatccaccgtggtcact 446
>gb|CW458828.1|CW458828 fsbb001f205e19f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f205e19, DNA
sequence
Length = 675
Score = 161 bits (81), Expect = 2e-037
Identities = 102/109 (93%)
Strand = Plus / Plus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||||| |||||| ||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 96 cttggtaggacgagttcttgaggagcatctcgatgagcttcctgtcgacgatgctgtcgt 155
Query: 873 ccaccgccaggacatggaaccgcgactcggcgtccagcaccgtcatggc 921
||||||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 156 ccaccgcgaggacatggaaccgcgactcggcatccaccaccgtcatggc 204
>gb|CW481408.1|CW481408 fsbb001f240p09k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f240p09, DNA
sequence
Length = 601
Score = 161 bits (81), Expect = 2e-037
Identities = 102/109 (93%)
Strand = Plus / Minus
Query: 813 cttggtaagacgagctcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgt 872
||||||| |||||| ||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 452 cttggtaggacgagttcttgaggagcatctcgatgagcttcctgtcgacgatgctgtcgt 393
Query: 873 ccaccgccaggacatggaaccgcgactcggcgtccagcaccgtcatggc 921
||||||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 392 ccaccgcgaggacatggaaccgcgactcggcatccaccaccgtcatggc 344
>gb|CW056974.1|CW056974 104_298_10517969_115_30157 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517969, DNA
sequence
Length = 557
Score = 155 bits (78), Expect = 9e-036
Identities = 90/94 (95%)
Strand = Plus / Minus
Query: 721 ggaggaggatgacggcggcgacgcgtcctccgcgccgttgtccctcagccccagcagctc 780
||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 176 ggaggaggaagacggcgacgacgcgtcctccgccccgttgtccctcagccccagcagctc 117
Query: 781 cagcgccttgttcccggaatccaccgtggtcact 814
|||||||||| |||||||||||||||||||||||
Sbjct: 116 cagcgccttgctcccggaatccaccgtggtcact 83
Score = 123 bits (62), Expect = 3e-026
Identities = 68/70 (97%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgatgagactcacgt 680
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 374 tgagcagatcgtatcctgtcatgcctggcatgcagtagtcagtgatgatgagattcacgt 315
Query: 681 cgatctcctg 690
||||||||||
Sbjct: 314 cgatctcctg 305
Score = 40.1 bits (20), Expect = 0.38
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 564 cagacgacatgatcaccaccggaatgtc 591
|||| |||||||||||||| ||||||||
Sbjct: 557 cagaagacatgatcaccacaggaatgtc 530
>gb|BZ334682.1|BZ334682 hx80h06.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx80h06 5', DNA sequence
Length = 738
Score = 123 bits (62), Expect = 3e-026
Identities = 68/70 (97%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgatgagactcacgt 680
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 269 tgagcagatcgtatcctgtcatgcctggcatgcagtagtcagtgatgatgagattcacgt 210
Query: 681 cgatctcctg 690
||||||||||
Sbjct: 209 cgatctcctg 200
Score = 113 bits (57), Expect = 3e-023
Identities = 66/69 (95%)
Strand = Plus / Minus
Query: 721 ggaggaggatgacggcggcgacgcgtcctccgcgccgttgtccctcagccccagcagctc 780
||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 71 ggaggaggaagacggcgacgacgcgtcctccgccccgttgtccctcagccccagcagctc 12
Query: 781 cagcgcctt 789
|||||||||
Sbjct: 11 cagcgcctt 3
Score = 111 bits (56), Expect = 1e-022
Identities = 71/76 (93%)
Strand = Plus / Minus
Query: 536 cacctgctgatccgggcaggcacgttctcagacgacatgatcaccaccggaatgtccgtg 595
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| ||
Sbjct: 480 cacctgctgatccgggcaggcacattctcagaagacatgatcaccacaggaatgtccttg 421
Query: 596 agcgatgaggacccct 611
||||| ||||||||||
Sbjct: 420 agcgaggaggacccct 405
>gb|CW101251.1|CW101251 104_469_11004541_116_34404_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11004541, DNA
sequence
Length = 691
Score = 123 bits (62), Expect = 3e-026
Identities = 68/70 (97%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgatgagactcacgt 680
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 78 tgagcagatcgtatcctgtcatgcctggcatgcagtagtcagtgatgatgagattcacgt 19
Query: 681 cgatctcctg 690
||||||||||
Sbjct: 18 cgatctcctg 9
Score = 111 bits (56), Expect = 1e-022
Identities = 71/76 (93%)
Strand = Plus / Minus
Query: 536 cacctgctgatccgggcaggcacgttctcagacgacatgatcaccaccggaatgtccgtg 595
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| ||
Sbjct: 289 cacctgctgatccgggcaggcacattctcagaagacatgatcaccacaggaatgtccttg 230
Query: 596 agcgatgaggacccct 611
||||| ||||||||||
Sbjct: 229 agcgaggaggacccct 214
>gb|CW163094.1|CW163094 104_570_11151283_148_36446_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11151283, DNA
sequence
Length = 728
Score = 123 bits (62), Expect = 3e-026
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgatgagactcacgt 680
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 658 tgagcagatcgtatcctgtcatgcctggcatgcagtagtcagtgatgatgagattcacgt 717
Query: 681 cgatctcctg 690
||||||||||
Sbjct: 718 cgatctcctg 727
Score = 111 bits (56), Expect = 1e-022
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 536 cacctgctgatccgggcaggcacgttctcagacgacatgatcaccaccggaatgtccgtg 595
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| ||
Sbjct: 447 cacctgctgatccgggcaggcacattctcagaagacatgatcaccacaggaatgtccttg 506
Query: 596 agcgatgaggacccct 611
||||| ||||||||||
Sbjct: 507 agcgaggaggacccct 522
>gb|CW429386.1|CW429386 fsbb001f142j21f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f142j21, DNA
sequence
Length = 694
Score = 123 bits (62), Expect = 3e-026
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgatgagactcacgt 680
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 538 tgagcagatcgtatcctgtcatgcctggcatgcagtagtcagtgatgatgagattcacgt 597
Query: 681 cgatctcctg 690
||||||||||
Sbjct: 598 cgatctcctg 607
Score = 111 bits (56), Expect = 1e-022
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 536 cacctgctgatccgggcaggcacgttctcagacgacatgatcaccaccggaatgtccgtg 595
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| ||
Sbjct: 327 cacctgctgatccgggcaggcacattctcagaagacatgatcaccacaggaatgtccttg 386
Query: 596 agcgatgaggacccct 611
||||| ||||||||||
Sbjct: 387 agcgaggaggacccct 402
>gb|CW132345.1|CW132345 104_515_11116162_116_34799_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11116162, DNA
sequence
Length = 438
Score = 119 bits (60), Expect = 5e-025
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 442 gggctgcttccgcttcagcaggtgtgacttgagcttcttcatgtcggccggcttcacggg 501
|||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 119 gggctgcttccgtatcagcaggtgtgacttgagcttcttcatgtcagcgagcttcacggg 60
Query: 502 cttcaggaagaactcctccgcgccatcctgcaagcacctg 541
||||||||| ||||||| |||||||| | ||||||||||
Sbjct: 59 cttcaggaaaaactcctatgcgccatcttccaagcacctg 20
Score = 42.1 bits (21), Expect = 0.096
Identities = 53/63 (84%), Gaps = 3/63 (4%)
Strand = Plus / Minus
Query: 209 gatcaggtctccacagtcaggctgctcgtagacagcctcctcggcttggtgctctccggc 268
|||||||||||||| | ||| ||||| || ||||| ||||||||||||||| || |||
Sbjct: 403 gatcaggtctccacggccagcctgctggtggacag---cctcggcttggtgctgtctggc 347
Query: 269 gcc 271
|||
Sbjct: 346 gcc 344
>gb|BZ347625.1|BZ347625 ho31b03.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho31b03 5', DNA sequence
Length = 591
Score = 111 bits (56), Expect = 1e-022
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 536 cacctgctgatccgggcaggcacgttctcagacgacatgatcaccaccggaatgtccgtg 595
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| ||
Sbjct: 496 cacctgctgatccgggcaggcacattctcagaagacatgatcaccacaggaatgtccttg 555
Query: 596 agcgatgaggacccct 611
||||| ||||||||||
Sbjct: 556 agcgaggaggacccct 571
>gb|CW324049.1|CW324049 104_818_11476950_148_35907_023 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11476950, DNA
sequence
Length = 710
Score = 111 bits (56), Expect = 1e-022
Identities = 71/76 (93%)
Strand = Plus / Minus
Query: 536 cacctgctgatccgggcaggcacgttctcagacgacatgatcaccaccggaatgtccgtg 595
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| ||
Sbjct: 162 cacctgctgatccgggcaggcacattctcagaagacatgatcaccacaggaatgtccttg 103
Query: 596 agcgatgaggacccct 611
||||| ||||||||||
Sbjct: 102 agcgaggaggacccct 87
>gb|CW352347.1|CW352347 fsbb001f014j06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f014j06, DNA
sequence
Length = 421
Score = 111 bits (56), Expect = 1e-022
Identities = 71/76 (93%)
Strand = Plus / Minus
Query: 536 cacctgctgatccgggcaggcacgttctcagacgacatgatcaccaccggaatgtccgtg 595
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| ||
Sbjct: 158 cacctgctgatccgggcaggcacattctcagaagacatgatcaccacaggaatgtccttg 99
Query: 596 agcgatgaggacccct 611
||||| ||||||||||
Sbjct: 98 agcgaggaggacccct 83
>gb|CW433995.1|CW433995 fsbb001f149h18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f149h18, DNA
sequence
Length = 673
Score = 111 bits (56), Expect = 1e-022
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 458 agcaggtgtgacttgagcttcttcatgtcggccggcttcacgggcttcaggaagaactcc 517
||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct: 1 agcaggtgtgacttgagcttcttcatgtcagcgagcttcacgggcttcaggaaaaactcc 60
Query: 518 tccgcgccatcctgcaagcacctg 541
|| |||||||| | ||||||||||
Sbjct: 61 tctgcgccatcttccaagcacctg 84
>gb|CW481407.1|CW481407 fsbb001f240p09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f240p09, DNA
sequence
Length = 798
Score = 111 bits (56), Expect = 1e-022
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 536 cacctgctgatccgggcaggcacgttctcagacgacatgatcaccaccggaatgtccgtg 595
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| ||
Sbjct: 626 cacctgctgatccgggcaggcacattctcagaagacatgatcaccacaggaatgtccttg 685
Query: 596 agcgatgaggacccct 611
||||| ||||||||||
Sbjct: 686 agcgaggaggacccct 701
>gb|BG560269.1|BG560269 RHIZ2_72_B09.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 552
Score = 105 bits (53), Expect = 8e-021
Identities = 113/133 (84%)
Strand = Plus / Minus
Query: 792 tcccggaatccaccgtggtcacttggtaagacgagctcttgagcagcatctcgatgagct 851
|||||||||| || ||||| |||||| | || ||| ||||||| ||| ||||||||||||
Sbjct: 325 tcccggaatcgacagtggttacttggaaggaagaggtcttgaggagcctctcgatgagct 266
Query: 852 tcctgtcgatgatgctgtcgtccaccgccaggacatggaaccgcgactcggcgtccagca 911
||||||| || |||||||||||| ||||||||||||||| ||| ||||| | ||| ||
Sbjct: 265 tcctgtcagggaggctgtcgtccacggccaggacatggaacggcgtctcggtggccacca 206
Query: 912 ccgtcatggctgg 924
||| |||||||||
Sbjct: 205 ccgccatggctgg 193
Score = 69.9 bits (35), Expect = 4e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 623 agcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct: 461 agcagatcataccctgtcatgccgggcatgcagtagtccgtgatgat 415
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 559 gttctcagacgacatgatcaccaccgg 585
||||||||||||||||||||| |||||
Sbjct: 528 gttctcagacgacatgatcacgaccgg 502
>gb|CN123943.1|CN123943 RHOH1_1_D12.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_1_D12_A002 5', mRNA sequence
Length = 721
Score = 95.6 bits (48), Expect = 7e-018
Identities = 96/112 (85%)
Strand = Plus / Minus
Query: 781 cagcgccttgttcccggaatccaccgtggtcacttggtaagacgagctcttgagcagcat 840
|||||||||| |||| || || || |||||||||||| | || ||| ||||||| ||| |
Sbjct: 302 cagcgccttgctccctgagtcgacagtggtcacttggaaggaagaggtcttgaggagcct 243
Query: 841 ctcgatgagcttcctgtcgatgatgctgtcgtccaccgccaggacatggaac 892
|||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 242 ctcgatgagcttcctgtccgggagactgtcgtccaccgccaggacatggaac 191
Score = 73.8 bits (37), Expect = 3e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct: 426 tgagcaggtcatatcctgtcatgccgggcatgcagtagtctgtgatgat 378
>gb|CN140768.1|CN140768 OX1_46_H12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_46_H12_A002 5', mRNA sequence
Length = 708
Score = 95.6 bits (48), Expect = 7e-018
Identities = 96/112 (85%)
Strand = Plus / Minus
Query: 781 cagcgccttgttcccggaatccaccgtggtcacttggtaagacgagctcttgagcagcat 840
|||||||||| |||| || || || |||||||||||| | || ||| ||||||| ||| |
Sbjct: 254 cagcgccttgctccctgagtcgacagtggtcacttggaaggaagaggtcttgaggagcct 195
Query: 841 ctcgatgagcttcctgtcgatgatgctgtcgtccaccgccaggacatggaac 892
|||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 194 ctcgatgagcttcctgtccgggagactgtcgtccaccgccaggacatggaac 143
Score = 73.8 bits (37), Expect = 3e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct: 378 tgagcaggtcatatcctgtcatgccgggcatgcagtagtctgtgatgat 330
>gb|CW483405.1|CW483405 fsbb001f245a14f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f245a14, DNA
sequence
Length = 633
Score = 81.8 bits (41), Expect = 1e-013
Identities = 44/45 (97%)
Strand = Plus / Minus
Query: 440 ttgggctgcttccgcttcagcaggtgtgacttgagcttcttcatg 484
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 68 ttgggctgcttccgtttcagcaggtgtgacttgagcttcttcatg 24
Score = 73.8 bits (37), Expect = 3e-011
Identities = 57/63 (90%), Gaps = 3/63 (4%)
Strand = Plus / Minus
Query: 209 gatcaggtctccacagtcaggctgctcgtagacagcctcctcggcttggtgctctccggc 268
|||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 350 gatcaggtctccacggccaggctgctcgtggacag---cctcggcttggtgctctccggc 294
Query: 269 gcc 271
|||
Sbjct: 293 gcc 291
Score = 44.1 bits (22), Expect = 0.024
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 295 ctccatggccgctgccttcctcttgttcacgccgttgc 332
||||||||| || |||||||||||||| |||||||||
Sbjct: 240 ctccatggcagccgccttcctcttgttgccgccgttgc 203
>gb|CW068677.1|CW068677 104_317_10525246_1_30096 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10525246, DNA
sequence
Length = 659
Score = 73.8 bits (37), Expect = 3e-011
Identities = 57/63 (90%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 209 gatcaggtctccacagtcaggctgctcgtagacagcctcctcggcttggtgctctccggc 268
|||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 498 gatcaggtctccacggccaggctgctcgtggacag---cctcggcttggtgctctccggc 554
Query: 269 gcc 271
|||
Sbjct: 555 gcc 557
Score = 44.1 bits (22), Expect = 0.024
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 295 ctccatggccgctgccttcctcttgttcacgccgttgc 332
||||||||| || |||||||||||||| |||||||||
Sbjct: 608 ctccatggcagccgccttcctcttgttgccgccgttgc 645
>gb|CW115976.1|CW115976 104_491_11106855_148_34596_058 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11106855, DNA
sequence
Length = 571
Score = 73.8 bits (37), Expect = 3e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct: 322 tgagcaggtcatatcctgtcatgccgggcatgcagtagtctgtgatgat 274
Score = 40.1 bits (20), Expect = 0.38
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 559 gttctcagacgacatgatcaccac 582
||||||||| ||||||||||||||
Sbjct: 525 gttctcagaggacatgatcaccac 502
>gb|CW119569.1|CW119569 104_496_11108842_148_34633_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11108842, DNA
sequence
Length = 498
Score = 73.8 bits (37), Expect = 3e-011
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct: 100 tgagcaggtcatatcctgtcatgccgggcatgcagtagtctgtgatgat 148
>gb|CW177733.1|CW177733 104_591_11159186_116_36610_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159186, DNA
sequence
Length = 696
Score = 73.8 bits (37), Expect = 3e-011
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 828 tcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgtccaccgccaggacat 887
||||||| ||| ||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 480 tcttgaggagcctctcgatgagcttcctgtccgggagactgtcgtccaccgccaggacat 421
Query: 888 ggaac 892
|||||
Sbjct: 420 ggaac 416
>gb|CW177734.1|CW177734 104_591_11159186_148_36609_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11159186, DNA
sequence
Length = 602
Score = 73.8 bits (37), Expect = 3e-011
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 828 tcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgtccaccgccaggacat 887
||||||| ||| ||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 458 tcttgaggagcctctcgatgagcttcctgtccgggagactgtcgtccaccgccaggacat 517
Query: 888 ggaac 892
|||||
Sbjct: 518 ggaac 522
Score = 73.8 bits (37), Expect = 3e-011
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct: 54 tgagcaggtcatatcctgtcatgccgggcatgcagtagtctgtgatgat 102
>gb|CW180886.1|CW180886 104_595_11163195_116_36641_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163195, DNA
sequence
Length = 531
Score = 73.8 bits (37), Expect = 3e-011
Identities = 57/63 (90%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 209 gatcaggtctccacagtcaggctgctcgtagacagcctcctcggcttggtgctctccggc 268
|||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 356 gatcaggtctccacggccaggctgctcgtggacag---cctcggcttggtgctctccggc 412
Query: 269 gcc 271
|||
Sbjct: 413 gcc 415
Score = 44.1 bits (22), Expect = 0.024
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 295 ctccatggccgctgccttcctcttgttcacgccgttgc 332
||||||||| || |||||||||||||| |||||||||
Sbjct: 466 ctccatggcagccgccttcctcttgttgccgccgttgc 503
>gb|CW180887.1|CW180887 104_595_11163195_148_36645_006 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163195, DNA
sequence
Length = 531
Score = 73.8 bits (37), Expect = 3e-011
Identities = 57/63 (90%), Gaps = 3/63 (4%)
Strand = Plus / Minus
Query: 209 gatcaggtctccacagtcaggctgctcgtagacagcctcctcggcttggtgctctccggc 268
|||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 174 gatcaggtctccacggccaggctgctcgtggacag---cctcggcttggtgctctccggc 118
Query: 269 gcc 271
|||
Sbjct: 117 gcc 115
Score = 44.1 bits (22), Expect = 0.024
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 295 ctccatggccgctgccttcctcttgttcacgccgttgc 332
||||||||| || |||||||||||||| |||||||||
Sbjct: 64 ctccatggcagccgccttcctcttgttgccgccgttgc 27
>gb|CW243252.1|CW243252 104_703_11219878_148_37569_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11219878, DNA
sequence
Length = 663
Score = 73.8 bits (37), Expect = 3e-011
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 828 tcttgagcagcatctcgatgagcttcctgtcgatgatgctgtcgtccaccgccaggacat 887
||||||| ||| ||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 400 tcttgaggagcctctcgatgagcttcctgtccgggagactgtcgtccaccgccaggacat 459
Query: 888 ggaac 892
|||||
Sbjct: 460 ggaac 464
Score = 67.9 bits (34), Expect = 2e-009
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 632 tatcctgtcatgccgggcatgcagtagtcagtgatgat 669
||||||||||||||||||||||||||||| ||||||||
Sbjct: 7 tatcctgtcatgccgggcatgcagtagtctgtgatgat 44
>gb|CW362187.1|CW362187 fsbb001f033c05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f033c05, DNA
sequence
Length = 730
Score = 73.8 bits (37), Expect = 3e-011
Identities = 57/63 (90%), Gaps = 3/63 (4%)
Strand = Plus / Minus
Query: 209 gatcaggtctccacagtcaggctgctcgtagacagcctcctcggcttggtgctctccggc 268
|||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 84 gatcaggtctccacggccaggctgctcgtggacag---cctcggcttggtgctctccggc 28
Query: 269 gcc 271
|||
Sbjct: 27 gcc 25
>gb|CW483406.1|CW483406 fsbb001f245a14k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f245a14, DNA
sequence
Length = 698
Score = 73.8 bits (37), Expect = 3e-011
Identities = 57/63 (90%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 209 gatcaggtctccacagtcaggctgctcgtagacagcctcctcggcttggtgctctccggc 268
|||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 518 gatcaggtctccacggccaggctgctcgtggacag---cctcggcttggtgctctccggc 574
Query: 269 gcc 271
|||
Sbjct: 575 gcc 577
Score = 44.1 bits (22), Expect = 0.024
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 295 ctccatggccgctgccttcctcttgttcacgccgttgc 332
||||||||| || |||||||||||||| |||||||||
Sbjct: 628 ctccatggcagccgccttcctcttgttgccgccgttgc 665
>gb|BF420979.1|BF420979 FM1_5_G02.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 537
Score = 73.8 bits (37), Expect = 3e-011
Identities = 57/63 (90%), Gaps = 3/63 (4%)
Strand = Plus / Minus
Query: 209 gatcaggtctccacagtcaggctgctcgtagacagcctcctcggcttggtgctctccggc 268
|||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 200 gatcaggtctccacggccaggctgctcgtggacag---cctcggcttggtgctctccggc 144
Query: 269 gcc 271
|||
Sbjct: 143 gcc 141
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 295 ctccatggccgctgccttcctcttgttcacgccgttgc 332
||||||||| ||||||||||||||||| |||||||||
Sbjct: 90 ctccatggcagctgccttcctcttgttgccgccgttgc 53
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 20 gcaggccgaagcagcagccgcta 42
|||||||||||||||||||||||
Sbjct: 442 gcaggccgaagcagcagccgcta 420
>gb|BF421886.1|BF421886 FM1_16_F06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 408
Score = 73.8 bits (37), Expect = 3e-011
Identities = 57/63 (90%), Gaps = 3/63 (4%)
Strand = Plus / Minus
Query: 209 gatcaggtctccacagtcaggctgctcgtagacagcctcctcggcttggtgctctccggc 268
|||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 66 gatcaggtctccacggccaggctgctcgtggacag---cctcggcttggtgctctccggc 10
Query: 269 gcc 271
|||
Sbjct: 9 gcc 7
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 20 gcaggccgaagcagcagccgcta 42
|||||||||||||||||||||||
Sbjct: 308 gcaggccgaagcagcagccgcta 286
>gb|CN123855.1|CN123855 RHOH1_1_D12.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_1_D12_A002 3', mRNA sequence
Length = 695
Score = 73.8 bits (37), Expect = 3e-011
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 621 tgagcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct: 209 tgagcaggtcatatcctgtcatgccgggcatgcagtagtctgtgatgat 161
Score = 67.9 bits (34), Expect = 2e-009
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 781 cagcgccttgttcccggaatccaccgtggtcacttggtaagacgagctcttgagcagcat 840
|||||||||| |||| || || || |||||||||||| | || ||| ||||||| ||| |
Sbjct: 85 cagcgccttgctccctgagtcgacagtggtcacttggaaggaagaggtcttgaggagcct 26
Query: 841 ctcgatgagcttcctgtc 858
||||||||||||||||||
Sbjct: 25 ctcgatgagcttcctgtc 8
>gb|CW111273.1|CW111273 104_484_11104216_116_34532_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11104216, DNA
sequence
Length = 499
Score = 69.9 bits (35), Expect = 4e-010
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 623 agcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct: 102 agcagatcataccctgtcatgccgggcatgcagtagtccgtgatgat 148
>gb|BF655994.1|BF655994 FM1_42_F02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 183
Score = 69.9 bits (35), Expect = 4e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 623 agcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct: 177 agcagatcataccctgtcatgccgggcatgcagtagtccgtgatgat 131
>gb|CD430993.1|CD430993 ETH1_6_F10.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_6_F10_A002 3', mRNA sequence
Length = 713
Score = 69.9 bits (35), Expect = 4e-010
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 623 agcagatcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct: 161 agcagatcataccctgtcatgccgggcatgcagtagtccgtgatgat 115
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 559 gttctcagacgacatgatcaccaccgg 585
||||||||||||||||||||| |||||
Sbjct: 225 gttctcagacgacatgatcacgaccgg 199
>gb|BZ352342.1|BZ352342 ho31b03.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho31b03 5', DNA sequence
Length = 371
Score = 65.9 bits (33), Expect = 7e-009
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 881 aggacatggaaccgcgactcggcgtccagcaccgtcatggc 921
||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 367 aggacatggaaccgcgactcggcttccaccaccgtcatggc 327
>gb|CL197703.1|CL197703 104_424_10943914_114_32334_033 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943914, DNA
sequence
Length = 621
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 497 acgggcttcaggaagaactcctccgcgccatcctgcaagcacctgctgatccgggcaggc 556
|||||||| |||| ||| ||||| ||||| |||| || ||| | | |||| |||| |||
Sbjct: 218 acgggcttgaggaggaagtcctcggcgccctcctccaggcagcgggtgatgcgggtgggc 277
Query: 557 acgttctcagacgacatgatcaccaccgg 585
|||||||| |||||||||||||| |||||
Sbjct: 278 acgttctccgacgacatgatcacgaccgg 306
>gb|CW082645.1|CW082645 104_424_10943914_114_32383_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10943914, DNA
sequence
Length = 712
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 497 acgggcttcaggaagaactcctccgcgccatcctgcaagcacctgctgatccgggcaggc 556
|||||||| |||| ||| ||||| ||||| |||| || ||| | | |||| |||| |||
Sbjct: 217 acgggcttgaggaggaagtcctcggcgccctcctccaggcagcgggtgatgcgggtgggc 276
Query: 557 acgttctcagacgacatgatcaccaccgg 585
|||||||| |||||||||||||| |||||
Sbjct: 277 acgttctccgacgacatgatcacgaccgg 305
>gb|CW188123.1|CW188123 104_607_11172854_148_36727_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172854, DNA
sequence
Length = 608
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 497 acgggcttcaggaagaactcctccgcgccatcctgcaagcacctgctgatccgggcaggc 556
|||||||| |||| ||| ||||| ||||| |||| || ||| | | |||| |||| |||
Sbjct: 486 acgggcttgaggaggaagtcctcggcgccctcctccaggcagcgggtgatgcgggtgggc 545
Query: 557 acgttctcagacgacatgatcaccaccgg 585
|||||||| |||||||||||||| |||||
Sbjct: 546 acgttctccgacgacatgatcacgaccgg 574
>gb|CW198874.1|CW198874 104_623_11183207_116_36840_084 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183207, DNA
sequence
Length = 686
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 497 acgggcttcaggaagaactcctccgcgccatcctgcaagcacctgctgatccgggcaggc 556
|||||||| |||| ||| ||||| ||||| |||| || ||| | | |||| |||| |||
Sbjct: 176 acgggcttgaggaggaagtcctcggcgccctcctccaggcagcgggtgatgcgggtgggc 235
Query: 557 acgttctcagacgacatgatcaccaccgg 585
|||||||| |||||||||||||| |||||
Sbjct: 236 acgttctccgacgacatgatcacgaccgg 264
>gb|CW467089.1|CW467089 fsbb001f218k03k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f218k03, DNA
sequence
Length = 411
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 497 acgggcttcaggaagaactcctccgcgccatcctgcaagcacctgctgatccgggcaggc 556
|||||||| |||| ||| ||||| ||||| |||| || ||| | | |||| |||| |||
Sbjct: 252 acgggcttgaggaggaagtcctcggcgccctcctccaggcagcgggtgatgcgggtgggc 311
Query: 557 acgttctcagacgacatgatcaccaccgg 585
|||||||| |||||||||||||| |||||
Sbjct: 312 acgttctccgacgacatgatcacgaccgg 340
>gb|CF486168.1|CF486168 POL1_36_D06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_36_D06_A002 3', mRNA sequence
Length = 618
Score = 58.0 bits (29), Expect = 2e-006
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 482 atgtcggccggcttcacgggcttcaggaagaactcctccgcgccatcctgcaagcacctg 541
||||||| |||| | ||||||||||| | ||| ||||||||||| |||| || ||| |||
Sbjct: 265 atgtcggacggcctgacgggcttcagcaggaagtcctccgcgccttcctccaggcatctg 206
Query: 542 ctgatccgggcaggcacgttctcagacgacatgatcaccac 582
| |||| || ||||||||||| || ||||| ||||||||
Sbjct: 205 gtaatcctggtgggcacgttctcggaggacataatcaccac 165
>gb|CN146978.1|CN146978 WOUND1_46_C04.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_46_C04_A002 3', mRNA sequence
Length = 759
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 497 acgggcttcaggaagaactcctccgcgccatcctgcaagcacctgctgatccgggcaggc 556
|||||||| |||| ||| ||||| ||||| |||| || ||| | | |||| |||| |||
Sbjct: 420 acgggcttgaggaggaagtcctcggcgccctcctccaggcaacgggtgatgcgggtgggc 361
Query: 557 acgttctcagacgacatgatcaccaccgg 585
|||||||| |||||||||||||| |||||
Sbjct: 360 acgttctccgacgacatgatcacgaccgg 332
>gb|CN147029.1|CN147029 WOUND1_46_C04.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_46_C04_A002 5', mRNA sequence
Length = 771
Score = 58.0 bits (29), Expect = 2e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 497 acgggcttcaggaagaactcctccgcgccatcctgcaagcacctgctgatccgggcaggc 556
|||||||| |||| ||| ||||| ||||| |||| || ||| | | |||| |||| |||
Sbjct: 617 acgggcttgaggaggaagtcctcggcgccctcctccaggcagcgggtgatgcgggtgggc 558
Query: 557 acgttctcagacgacatgatcaccaccgg 585
|||||||| |||||||||||||| |||||
Sbjct: 557 acgttctccgacgacatgatcacgaccgg 529
>gb|CW036224.1|CW036224 104_267_10503634_115_30375 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10503634, DNA
sequence
Length = 606
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 635 cctgtcatgccgggcatgcagtagtcagtgatgat 669
|||||||||||||||||| ||||||| ||||||||
Sbjct: 598 cctgtcatgccgggcatgtagtagtctgtgatgat 564
>gb|CW188122.1|CW188122 104_607_11172854_116_36728_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11172854, DNA
sequence
Length = 665
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 554 ggcacgttctcagacgacatgatcaccaccgg 585
||||||||||| |||||||||||||| |||||
Sbjct: 642 ggcacgttctccgacgacatgatcacgaccgg 611
>gb|CF483095.1|CF483095 POL1_11_F04.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_11_F04_A002 3', mRNA sequence
Length = 574
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 554 ggcacgttctcagacgacatgatcaccaccgg 585
||||||||||| |||||||||||||| |||||
Sbjct: 172 ggcacgttctccgacgacatgatcacgaccgg 141
>gb|CW180936.1|CW180936 104_595_11163223_116_36639_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11163223, DNA
sequence
Length = 336
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 719 gaggaggaggatgacggcggcgacgcg 745
||||||||||||||||||| |||||||
Sbjct: 189 gaggaggaggatgacggcgacgacgcg 215
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 402,684
Number of Sequences: 832831
Number of extensions: 402684
Number of successful extensions: 116724
Number of sequences better than 0.5: 107
Number of HSP's better than 0.5 without gapping: 106
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 116437
Number of HSP's gapped (non-prelim): 263
length of query: 991
length of database: 491,359,669
effective HSP length: 20
effective length of query: 971
effective length of database: 474,703,049
effective search space: 460936660579
effective search space used: 460936660579
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)