BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2622915.2.1
(584 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE593911.1|BE593911 WS1_103_H04.g1_A002 Water-stressed 1... 272 3e-071
gb|BG559753.1|BG559753 RHIZ2_73_C03.g1_A003 Rhizome2 (RHIZ2... 272 3e-071
gb|BI351339.1|BI351339 IP1_70_C11.b1_A002 Immature pannicle... 272 3e-071
gb|BM328492.1|BM328492 PIC1_29_H04.g1_A002 Pathogen-infecte... 272 3e-071
gb|CD227433.1|CD227433 CCC1_51_D09.b1_A007 Callus culture/c... 272 3e-071
gb|CD235416.1|CD235416 SS1_29_F07.b1_A012 Salt-stressed see... 272 3e-071
gb|CF486159.1|CF486159 POL1_36_C08.b1_A002 Pollen Sorghum b... 272 3e-071
gb|CN127125.1|CN127125 RHOH1_21_E05.b1_A002 Acid- and alkal... 272 3e-071
gb|CN127600.1|CN127600 RHOH1_24_A08.b1_A002 Acid- and alkal... 272 3e-071
gb|CN135808.1|CN135808 OX1_39_C06.b1_A002 Oxidatively-stres... 272 3e-071
gb|CN142308.1|CN142308 WOUND1_9_D10.b1_A002 Wounded leaves ... 272 3e-071
gb|CX609713.1|CX609713 ANR1_14_G03.b1_A002 Anaerobic roots ... 272 3e-071
gb|CX621918.1|CX621918 GABR1_61_A04.b2_A002 GA- or brassino... 272 3e-071
gb|CX621919.1|CX621919 GABR1_61_A05.b2_A002 GA- or brassino... 272 3e-071
gb|BG464569.1|BG464569 EM1_71_D07.g1_A002 Embryo 1 (EM1) So... 270 1e-070
gb|CN135891.1|CN135891 OX1_39_C06.g1_A002 Oxidatively-stres... 262 3e-068
gb|CN142381.1|CN142381 WOUND1_9_D10.g1_A002 Wounded leaves ... 262 3e-068
gb|CD226192.1|CD226192 CCC1_44_B06.b1_A007 Callus culture/c... 258 5e-067
gb|CN132247.1|CN132247 OX1_5_B02.b1_A002 Oxidatively-stress... 258 5e-067
gb|CN150289.1|CN150289 WOUND1_68_E07.b1_A002 Wounded leaves... 242 3e-062
gb|CN127212.1|CN127212 RHOH1_21_E05.g3_A002 Acid- and alkal... 240 1e-061
gb|BG487875.1|BG487875 RHIZ2_60_D11.g1_A003 Rhizome2 (RHIZ2... 230 1e-058
gb|BG049176.1|BG049176 OV1_24_D10.g1_A002 Ovary 1 (OV1) Sor... 228 5e-058
gb|BI351138.1|BI351138 IP1_70_C11.g1_A002 Immature pannicle... 216 2e-054
gb|BG488061.1|BG488061 RHIZ2_62_G10.g1_A003 Rhizome2 (RHIZ2... 214 7e-054
gb|BG465846.1|BG465846 RHIZ2_45_C07.g1_A003 Rhizome2 (RHIZ2... 210 1e-052
gb|CW087177.1|CW087177 104_431_10947456_116_33023_088 Sorgh... 165 6e-039
gb|CW087176.1|CW087176 104_431_10947456_114_33027_088 Sorgh... 143 2e-032
gb|CX614641.1|CX614641 GABR1_15_G08.b1_A002 GA- or brassino... 141 8e-032
gb|BG465902.1|BG465902 RHIZ2_46_A07.g1_A003 Rhizome2 (RHIZ2... 133 2e-029
gb|CW324686.1|CW324686 104_819_11477291_148_35910_042 Sorgh... 127 1e-027
gb|CN127681.1|CN127681 RHOH1_24_A08.g3_A002 Acid- and alkal... 127 1e-027
gb|CF488868.1|CF488868 POL1_52_E10.g1_A002 Pollen Sorghum b... 121 8e-026
gb|BG558687.1|BG558687 RHIZ2_59_B06.g1_A003 Rhizome2 (RHIZ2... 117 1e-024
gb|BG558693.1|BG558693 RHIZ2_59_C01.g1_A003 Rhizome2 (RHIZ2... 117 1e-024
gb|BG241509.1|BG241509 RHIZ2_50_C01.g1_A003 Rhizome2 (RHIZ2... 115 5e-024
gb|BG464783.1|BG464783 EM1_34_B03.g1_A002 Embryo 1 (EM1) So... 111 7e-023
gb|CF430590.1|CF430590 NIT1_3_G02.b1_A002 Nitrogen-deficien... 111 7e-023
gb|CF430623.1|CF430623 NIT1_3_B01.b1_A002 Nitrogen-deficien... 111 7e-023
gb|CF431426.1|CF431426 NIT1_7_H02.b1_A002 Nitrogen-deficien... 111 7e-023
gb|CN133434.1|CN133434 OX1_12_E06.b1_A002 Oxidatively-stres... 111 7e-023
gb|CN133512.1|CN133512 OX1_12_E06.g1_A002 Oxidatively-stres... 111 7e-023
gb|CX609800.1|CX609800 ANR1_14_G03.g1_A002 Anaerobic roots ... 107 1e-021
gb|BG159402.1|BG159402 OV2_7_D09.g1_A002 Ovary 2 (OV2) Sorg... 105 5e-021
gb|BG241491.1|BG241491 RHIZ2_50_A02.g1_A003 Rhizome2 (RHIZ2... 103 2e-020
gb|CD233128.1|CD233128 SS1_12_H08.b1_A012 Salt-stressed see... 103 2e-020
gb|CF426903.1|CF426903 PH1_2_G08.b1_A002 Phosphorous-defici... 103 2e-020
gb|CF489194.1|CF489194 POL1_55_G01.b1_A002 Pollen Sorghum b... 103 2e-020
gb|CL149718.1|CL149718 104_330_10778012_114_31353_332 Sorgh... 88 1e-015
gb|CL187772.1|CL187772 104_403_10901121_116_32465_037 Sorgh... 88 1e-015
gb|CX621998.1|CX621998 GABR1_61_A04.g2_A002 GA- or brassino... 42 0.056
>gb|BE593911.1|BE593911 WS1_103_H04.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 637
Score = 272 bits (137), Expect = 3e-071
Identities = 169/180 (93%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 206 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 147
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 146 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 87
Query: 525 ggaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccacagcc 584
||||| |||||||| ||||||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 86 ggaagtgatagccgctgtgagcttcaactgtctccaatatcctcaacaccatccacagcc 27
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 477 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 418
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 417 acag-gaaatcaaaatctca 399
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 267 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 210
Query: 328 acaacc 333
||||||
Sbjct: 209 acaacc 204
>gb|BG559753.1|BG559753 RHIZ2_73_C03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 485
Score = 272 bits (137), Expect = 3e-071
Identities = 169/180 (93%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 182 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 123
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 122 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 63
Query: 525 ggaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccacagcc 584
||||| |||||||| ||||||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 62 ggaagtgatagccgctgtgagcttcaactgtctccaatatcctcaacaccatccacagcc 3
Score = 117 bits (59), Expect = 1e-024
Identities = 98/109 (89%), Gaps = 4/109 (3%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 453 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 394
Query: 117 acagagaaatcaacatctcaggagcctatagtatcggccgtcaggcaat 165
|||| |||||||| ||||| | |||||||||||| |||||||||||
Sbjct: 393 acag-gaaatcaaaatctc---aacctatagtatcgatcgtcaggcaat 349
Score = 69.9 bits (35), Expect = 2e-010
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| ||
Sbjct: 243 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccga 186
Query: 328 acaacc 333
||||||
Sbjct: 185 acaacc 180
>gb|BI351339.1|BI351339 IP1_70_C11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 526
Score = 272 bits (137), Expect = 3e-071
Identities = 169/180 (93%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 513 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 454
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 453 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 394
Query: 525 ggaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccacagcc 584
||||| |||||||| ||||||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 393 ggaagtgatagccgctgtgagcttcaactgtctccaatatcctcaacaccatccacagcc 334
>gb|BM328492.1|BM328492 PIC1_29_H04.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 504
Score = 272 bits (137), Expect = 3e-071
Identities = 169/180 (93%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 203 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 144
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 143 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 84
Query: 525 ggaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccacagcc 584
||||| |||||||| ||||||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 83 ggaagtgatagccgctgtgagcttcaactgtctccaatatcctcaacaccatccacagcc 24
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 474 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 415
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 414 acag-gaaatcaaaatctca 396
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 264 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 207
Query: 328 acaacc 333
||||||
Sbjct: 206 acaacc 201
>gb|CD227433.1|CD227433 CCC1_51_D09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_51_D09_A007 3', mRNA sequence
Length = 597
Score = 272 bits (137), Expect = 3e-071
Identities = 169/180 (93%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 297 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 238
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 237 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 178
Query: 525 ggaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccacagcc 584
||||| |||||||| ||||||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 177 ggaagtgatagccgctgtgagcttcaactgtctccaatatcctcaacaccatccacagcc 118
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 568 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 509
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 508 acag-gaaatcaaaatctca 490
Score = 54.0 bits (27), Expect = 1e-005
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| | |||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 358 ttcttcccttctttcccctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 301
Query: 328 acaacc 333
||||||
Sbjct: 300 acaacc 295
>gb|CD235416.1|CD235416 SS1_29_F07.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_29_F07_A012 3', mRNA sequence
Length = 669
Score = 272 bits (137), Expect = 3e-071
Identities = 169/180 (93%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 181 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 122
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 121 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 62
Query: 525 ggaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccacagcc 584
||||| |||||||| ||||||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 61 ggaagtgatagccgctgtgagcttcaactgtctccaatatcctcaacaccatccacagcc 2
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 452 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 393
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 392 acag-gaaatcaaaatctca 374
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 242 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 185
Query: 328 acaacc 333
||||||
Sbjct: 184 acaacc 179
>gb|CF486159.1|CF486159 POL1_36_C08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_36_C08_A002 3', mRNA sequence
Length = 688
Score = 272 bits (137), Expect = 3e-071
Identities = 169/180 (93%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 285 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 226
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 225 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 166
Query: 525 ggaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccacagcc 584
||||| |||||||| ||||||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 165 ggaagtgatagccgctgtgagcttcaactgtctccaatatcctcaacaccatccacagcc 106
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 556 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 497
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 496 acag-gaaatcaaaatctca 478
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 346 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 289
Query: 328 acaacc 333
||||||
Sbjct: 288 acaacc 283
>gb|CN127125.1|CN127125 RHOH1_21_E05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_E05_A002 3', mRNA sequence
Length = 779
Score = 272 bits (137), Expect = 3e-071
Identities = 169/180 (93%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 266 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 207
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 206 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 147
Query: 525 ggaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccacagcc 584
||||| |||||||| ||||||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 146 ggaagtgatagccgctgtgagcttcaactgtctccaatatcctcaacaccatccacagcc 87
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 537 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 478
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 477 acag-gaaatcaaaatctca 459
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 327 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 270
Query: 328 acaacc 333
||||||
Sbjct: 269 acaacc 264
>gb|CN127600.1|CN127600 RHOH1_24_A08.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_24_A08_A002 3', mRNA sequence
Length = 788
Score = 272 bits (137), Expect = 3e-071
Identities = 169/180 (93%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 297 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 238
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 237 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 178
Query: 525 ggaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccacagcc 584
||||| |||||||| ||||||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 177 ggaagtgatagccgctgtgagcttcaactgtctccaatatcctcaacaccatccacagcc 118
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 568 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 509
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 508 acag-gaaatcaaaatctca 490
Score = 54.0 bits (27), Expect = 1e-005
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| ||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 358 ttcttcccttctctctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 301
Query: 328 acaacc 333
||||||
Sbjct: 300 acaacc 295
>gb|CN135808.1|CN135808 OX1_39_C06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_39_C06_A002 3', mRNA sequence
Length = 795
Score = 272 bits (137), Expect = 3e-071
Identities = 169/180 (93%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 305 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 246
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 245 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 186
Query: 525 ggaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccacagcc 584
||||| |||||||| ||||||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 185 ggaagtgatagccgctgtgagcttcaactgtctccaatatcctcaacaccatccacagcc 126
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 576 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 517
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 516 acag-gaaatcaaaatctca 498
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 366 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 309
Query: 328 acaacc 333
||||||
Sbjct: 308 acaacc 303
>gb|CN142308.1|CN142308 WOUND1_9_D10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_9_D10_A002 3', mRNA sequence
Length = 730
Score = 272 bits (137), Expect = 3e-071
Identities = 169/180 (93%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 431 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 372
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 371 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 312
Query: 525 ggaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccacagcc 584
||||| |||||||| ||||||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 311 ggaagtgatagccgctgtgagcttcaactgtctccaatatcctcaacaccatccacagcc 252
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 702 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 643
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 642 acag-gaaatcaaaatctca 624
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 492 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 435
Query: 328 acaacc 333
||||||
Sbjct: 434 acaacc 429
>gb|CX609713.1|CX609713 ANR1_14_G03.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_14_G03_A002 3', mRNA sequence
Length = 776
Score = 272 bits (137), Expect = 3e-071
Identities = 169/180 (93%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 263 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 204
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 203 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 144
Query: 525 ggaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccacagcc 584
||||| |||||||| ||||||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 143 ggaagtgatagccgctgtgagcttcaactgtctccaatatcctcaacaccatccacagcc 84
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 534 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 475
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 474 acag-gaaatcaaaatctca 456
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 324 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 267
Query: 328 acaacc 333
||||||
Sbjct: 266 acaacc 261
>gb|CX621918.1|CX621918 GABR1_61_A04.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_61_A04_A002 3', mRNA sequence
Length = 779
Score = 272 bits (137), Expect = 3e-071
Identities = 169/180 (93%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 493 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 434
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 433 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 374
Query: 525 ggaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccacagcc 584
||||| |||||||| ||||||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 373 ggaagtgatagccgctgtgagcttcaactgtctccaatatcctcaacaccatccacagcc 314
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 764 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 705
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 704 acag-gaaatcaaaatctca 686
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 554 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 497
Query: 328 acaacc 333
||||||
Sbjct: 496 acaacc 491
>gb|CX621919.1|CX621919 GABR1_61_A05.b2_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_61_A05_A002 3', mRNA sequence
Length = 681
Score = 272 bits (137), Expect = 3e-071
Identities = 169/180 (93%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 386 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 327
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 326 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 267
Query: 525 ggaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccacagcc 584
||||| |||||||| ||||||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 266 ggaagtgatagccgctgtgagcttcaactgtctccaatatcctcaacaccatccacagcc 207
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 657 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 598
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 597 acag-gaaatcaaaatctca 579
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 447 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 390
Query: 328 acaacc 333
||||||
Sbjct: 389 acaacc 384
>gb|BG464569.1|BG464569 EM1_71_D07.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 654
Score = 270 bits (136), Expect = 1e-070
Identities = 168/179 (93%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 179 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 120
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 119 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 60
Query: 525 ggaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccacagc 583
||||| |||||||| ||||||||||||| |||| ||||| ||| |||||||||||||||
Sbjct: 59 ggaagtgatagccgctgtgagcttcaactgtctccaatatcctcaacaccatccacagc 1
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 450 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 391
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 390 acag-gaaatcaaaatctca 372
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 240 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 183
Query: 328 acaacc 333
||||||
Sbjct: 182 acaacc 177
>gb|CN135891.1|CN135891 OX1_39_C06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_39_C06_A002 5', mRNA sequence
Length = 831
Score = 262 bits (132), Expect = 3e-068
Identities = 164/175 (93%)
Strand = Plus / Minus
Query: 410 tccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtgatgg 469
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 831 tccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggtgatgg 772
Query: 470 tagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatgggaag 529
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct: 771 tagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatgggaag 712
Query: 530 ngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccacagcc 584
|||||||| ||||||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 711 tgatagccgctgtgagcttcaactgtctccaatatcctcaacaccatccacagcc 657
>gb|CN142381.1|CN142381 WOUND1_9_D10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_9_D10_A002 5', mRNA sequence
Length = 731
Score = 262 bits (132), Expect = 3e-068
Identities = 164/175 (93%)
Strand = Plus / Minus
Query: 410 tccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtgatgg 469
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 731 tccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggtgatgg 672
Query: 470 tagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatgggaag 529
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct: 671 tagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatgggaag 612
Query: 530 ngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatccacagcc 584
|||||||| ||||||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 611 tgatagccgctgtgagcttcaactgtctccaatatcctcaacaccatccacagcc 557
>gb|CD226192.1|CD226192 CCC1_44_B06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_44_B06_A007 3', mRNA sequence
Length = 663
Score = 258 bits (130), Expect = 5e-067
Identities = 162/173 (93%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 173 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 114
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 113 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 54
Query: 525 ggaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatc 577
||||| |||||||| ||||||||||||| |||| ||||| ||| |||||||||
Sbjct: 53 ggaagtgatagccgctgtgagcttcaactgtctccaatatcctcaacaccatc 1
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 444 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 385
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 384 acag-gaaatcaaaatctca 366
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 234 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 177
Query: 328 acaacc 333
||||||
Sbjct: 176 acaacc 171
>gb|CN132247.1|CN132247 OX1_5_B02.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_5_B02_A002 3', mRNA sequence
Length = 686
Score = 258 bits (130), Expect = 5e-067
Identities = 162/173 (93%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 173 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 114
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 113 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 54
Query: 525 ggaagngatagccggtgtgagcttcaacagtcttcaatacccttaacaccatc 577
||||| |||||||| ||||||||||||| |||| ||||| ||| |||||||||
Sbjct: 53 ggaagtgatagccgctgtgagcttcaactgtctccaatatcctcaacaccatc 1
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 444 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 385
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 384 acag-gaaatcaaaatctca 366
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 234 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 177
Query: 328 acaacc 333
||||||
Sbjct: 176 acaacc 171
>gb|CN150289.1|CN150289 WOUND1_68_E07.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_68_E07_A002 3', mRNA sequence
Length = 659
Score = 242 bits (122), Expect = 3e-062
Identities = 145/153 (94%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 154 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 95
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 94 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 35
Query: 525 ggaagngatagccggtgtgagcttcaacagtct 557
||||| |||||||| ||||||||||||| ||||
Sbjct: 34 ggaagtgatagccgctgtgagcttcaactgtct 2
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 425 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 366
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 365 acag-gaaatcaaaatctca 347
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 215 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 158
Query: 328 acaacc 333
||||||
Sbjct: 157 acaacc 152
>gb|CN127212.1|CN127212 RHOH1_21_E05.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_E05_A002 5', mRNA sequence
Length = 774
Score = 240 bits (121), Expect = 1e-061
Identities = 150/160 (93%)
Strand = Plus / Minus
Query: 425 gtcgaggcatagttccctgactttgtgtacagcactcggtgatggtagtcatggaagtcc 484
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 774 gtcgaggcatagttccctgactttgtgtacagcacacggtgatggtagtcatggaagtcc 715
Query: 485 gagccaccgtacaggggcaggaaatttgatgggctccatgggaagngatagccggtgtga 544
||||| || ||||| |||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 714 gagccgccatacagtggcaggaaatttgatgggctccatgggaagtgatagccgctgtga 655
Query: 545 gcttcaacagtcttcaatacccttaacaccatccacagcc 584
|||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 654 gcttcaactgtctccaatatcctcaacaccatccacagcc 615
>gb|BG487875.1|BG487875 RHIZ2_60_D11.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 634
Score = 230 bits (116), Expect = 1e-058
Identities = 136/143 (95%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 143 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 84
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 83 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 24
Query: 525 ggaagngatagccggtgtgagct 547
||||| |||||||| ||||||||
Sbjct: 23 ggaagtgatagccgctgtgagct 1
Score = 117 bits (59), Expect = 1e-024
Identities = 98/109 (89%), Gaps = 4/109 (3%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 414 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 355
Query: 117 acagagaaatcaacatctcaggagcctatagtatcggccgtcaggcaat 165
|||| |||||||| ||||| | |||||||||||| |||||||||||
Sbjct: 354 acag-gaaatcaaaatctc---aacctatagtatcgatcgtcaggcaat 310
Score = 69.9 bits (35), Expect = 2e-010
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| ||
Sbjct: 204 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccga 147
Query: 328 acaacc 333
||||||
Sbjct: 146 acaacc 141
>gb|BG049176.1|BG049176 OV1_24_D10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 569
Score = 228 bits (115), Expect = 5e-058
Identities = 135/142 (95%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 142 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 83
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 82 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 23
Query: 525 ggaagngatagccggtgtgagc 546
||||| |||||||| |||||||
Sbjct: 22 ggaagtgatagccgctgtgagc 1
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 413 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 354
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 353 acag-gaaatcaaaatctca 335
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 203 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 146
Query: 328 acaacc 333
||||||
Sbjct: 145 acaacc 140
>gb|BI351138.1|BI351138 IP1_70_C11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 595
Score = 216 bits (109), Expect = 2e-054
Identities = 126/132 (95%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 132 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 73
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 72 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 13
Query: 525 ggaagngatagc 536
||||| ||||||
Sbjct: 12 ggaagtgatagc 1
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 403 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 344
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 343 acag-gaaatcaaaatctca 325
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 193 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 136
Query: 328 acaacc 333
||||||
Sbjct: 135 acaacc 130
>gb|BG488061.1|BG488061 RHIZ2_62_G10.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 622
Score = 214 bits (108), Expect = 7e-054
Identities = 125/131 (95%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 131 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 72
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 71 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 12
Query: 525 ggaagngatag 535
||||| |||||
Sbjct: 11 ggaagtgatag 1
Score = 117 bits (59), Expect = 1e-024
Identities = 98/109 (89%), Gaps = 4/109 (3%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 402 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 343
Query: 117 acagagaaatcaacatctcaggagcctatagtatcggccgtcaggcaat 165
|||| |||||||| ||||| | |||||||||||| |||||||||||
Sbjct: 342 acag-gaaatcaaaatctc---aacctatagtatcgatcgtcaggcaat 298
Score = 69.9 bits (35), Expect = 2e-010
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| ||
Sbjct: 192 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccga 135
Query: 328 acaacc 333
||||||
Sbjct: 134 acaacc 129
>gb|BG465846.1|BG465846 RHIZ2_45_C07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 620
Score = 210 bits (106), Expect = 1e-052
Identities = 123/129 (95%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 129 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 70
Query: 465 gatggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatg 524
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct: 69 gatggtagtcatggaagtccgagccgccatacagtggcaggaaatttgatgggctccatg 10
Query: 525 ggaagngat 533
||||| |||
Sbjct: 9 ggaagtgat 1
Score = 117 bits (59), Expect = 1e-024
Identities = 98/109 (89%), Gaps = 4/109 (3%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 400 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 341
Query: 117 acagagaaatcaacatctcaggagcctatagtatcggccgtcaggcaat 165
|||| |||||||| ||||| | |||||||||||| |||||||||||
Sbjct: 340 acag-gaaatcaaaatctc---aacctatagtatcgatcgtcaggcaat 296
Score = 69.9 bits (35), Expect = 2e-010
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| ||
Sbjct: 190 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccga 133
Query: 328 acaacc 333
||||||
Sbjct: 132 acaacc 127
>gb|CW087177.1|CW087177 104_431_10947456_116_33023_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947456, DNA
sequence
Length = 726
Score = 165 bits (83), Expect = 6e-039
Identities = 99/103 (96%), Gaps = 1/103 (0%)
Strand = Plus / Plus
Query: 386 gtcatgctacggaaacctcaccagtccatgtaaacaaatgtcgaggcatagttccctgac 445
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 141 gtcatgctacggat-cctcaccagtccatataaacaaatgtcgaggcatagttccctgac 199
Query: 446 tttgtgtacagcactcggtgatggtagtcatggaagtccgagc 488
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 200 tttgtgtacagcacacggtgatggtagtcatggaagtccgagc 242
Score = 127 bits (64), Expect = 1e-027
Identities = 84/91 (92%)
Strand = Plus / Plus
Query: 494 tacaggggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaaca 553
||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 358 tacagtggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagcttcaact 417
Query: 554 gtcttcaatacccttaacaccatccacagcc 584
|||| ||||| ||| ||||||||||||||||
Sbjct: 418 gtctccaatatcctcaacaccatccacagcc 448
Score = 81.8 bits (41), Expect = 7e-014
Identities = 77/88 (87%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 12 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 69
Query: 328 acaacctgaaacacaaccagggagcttc 355
||||||||||||||| ||| |||||||
Sbjct: 70 acaacctgaaacacagccaatgagcttc 97
>gb|CW087176.1|CW087176 104_431_10947456_114_33027_088 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947456, DNA
sequence
Length = 703
Score = 143 bits (72), Expect = 2e-032
Identities = 84/88 (95%)
Strand = Plus / Minus
Query: 401 cctcaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcact 460
|||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 697 cctcaccagtccatataaacaaatgtcgaggcatagtcccctgactatgtgtacagcaca 638
Query: 461 cggtgatggtagtcatggaagtccgagc 488
||||||||||||||||||||||||||||
Sbjct: 637 cggtgatggtagtcatggaagtccgagc 610
Score = 127 bits (64), Expect = 1e-027
Identities = 84/91 (92%)
Strand = Plus / Minus
Query: 494 tacaggggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaaca 553
||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 494 tacagtggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagcttcaact 435
Query: 554 gtcttcaatacccttaacaccatccacagcc 584
|||| ||||| ||| ||||||||||||||||
Sbjct: 434 gtctccaatatcctcaacaccatccacagcc 404
>gb|CX614641.1|CX614641 GABR1_15_G08.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_15_G08_A002 3', mRNA sequence
Length = 618
Score = 141 bits (71), Expect = 8e-032
Identities = 77/79 (97%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 79 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 20
Query: 465 gatggtagtcatggaagtc 483
|||||||||||||||||||
Sbjct: 19 gatggtagtcatggaagtc 1
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 350 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 291
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 290 acag-gaaatcaaaatctca 272
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 140 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 83
Query: 328 acaacc 333
||||||
Sbjct: 82 acaacc 77
>gb|BG465902.1|BG465902 RHIZ2_46_A07.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 552
Score = 133 bits (67), Expect = 2e-029
Identities = 73/75 (97%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 75 accagtccatataaacaaatgtcgaggcatagttccctgactttgtgtacagcacacggt 16
Query: 465 gatggtagtcatgga 479
|||||||||||||||
Sbjct: 15 gatggtagtcatgga 1
Score = 117 bits (59), Expect = 1e-024
Identities = 98/109 (89%), Gaps = 4/109 (3%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 346 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 287
Query: 117 acagagaaatcaacatctcaggagcctatagtatcggccgtcaggcaat 165
|||| |||||||| ||||| | |||||||||||| |||||||||||
Sbjct: 286 acag-gaaatcaaaatctc---aacctatagtatcgatcgtcaggcaat 242
Score = 69.9 bits (35), Expect = 2e-010
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| ||
Sbjct: 136 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccga 79
Query: 328 acaacc 333
||||||
Sbjct: 78 acaacc 73
>gb|CW324686.1|CW324686 104_819_11477291_148_35910_042 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11477291, DNA
sequence
Length = 713
Score = 127 bits (64), Expect = 1e-027
Identities = 84/91 (92%)
Strand = Plus / Plus
Query: 494 tacaggggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaaca 553
||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 35 tacagtggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagcttcaact 94
Query: 554 gtcttcaatacccttaacaccatccacagcc 584
|||| ||||| ||| ||||||||||||||||
Sbjct: 95 gtctccaatatcctcaacaccatccacagcc 125
>gb|CN127681.1|CN127681 RHOH1_24_A08.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_24_A08_A002 5', mRNA sequence
Length = 744
Score = 127 bits (64), Expect = 1e-027
Identities = 84/91 (92%)
Strand = Plus / Minus
Query: 494 tacaggggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaaca 553
||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 739 tacagtggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagcttcaact 680
Query: 554 gtcttcaatacccttaacaccatccacagcc 584
|||| ||||| ||| ||||||||||||||||
Sbjct: 679 gtctccaatatcctcaacaccatccacagcc 649
>gb|CF488868.1|CF488868 POL1_52_E10.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_52_E10_A002 5', mRNA sequence
Length = 680
Score = 121 bits (61), Expect = 8e-026
Identities = 85/92 (92%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 494 tacaggggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaaca 553
||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 678 tacagtggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagcttcaact 619
Query: 554 gtcttcaataccctt-aacaccatccacagcc 584
|||| ||||| |||| ||||||||||||||||
Sbjct: 618 gtctccaatatccttcaacaccatccacagcc 587
>gb|BG558687.1|BG558687 RHIZ2_59_B06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 533
Score = 117 bits (59), Expect = 1e-024
Identities = 98/109 (89%), Gaps = 4/109 (3%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 311 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 252
Query: 117 acagagaaatcaacatctcaggagcctatagtatcggccgtcaggcaat 165
|||| |||||||| ||||| | |||||||||||| |||||||||||
Sbjct: 251 acag-gaaatcaaaatctc---aacctatagtatcgatcgtcaggcaat 207
Score = 71.9 bits (36), Expect = 6e-011
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctga 444
|||||||||| |||||||||||||||||||||||||||||
Sbjct: 40 accagtccatataaacaaatgtcgaggcatagttccctga 1
Score = 69.9 bits (35), Expect = 2e-010
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| ||
Sbjct: 101 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccga 44
Query: 328 acaacc 333
||||||
Sbjct: 43 acaacc 38
>gb|BG558693.1|BG558693 RHIZ2_59_C01.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 378
Score = 117 bits (59), Expect = 1e-024
Identities = 98/109 (89%), Gaps = 4/109 (3%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 158 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 99
Query: 117 acagagaaatcaacatctcaggagcctatagtatcggccgtcaggcaat 165
|||| |||||||| ||||| | |||||||||||| |||||||||||
Sbjct: 98 acag-gaaatcaaaatctc---aacctatagtatcgatcgtcaggcaat 54
>gb|BG241509.1|BG241509 RHIZ2_50_C01.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 266
Score = 115 bits (58), Expect = 5e-024
Identities = 94/104 (90%), Gaps = 4/104 (3%)
Strand = Plus / Minus
Query: 62 attcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaacacaga 121
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 122 attcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaacacag- 64
Query: 122 gaaatcaacatctcaggagcctatagtatcggccgtcaggcaat 165
|||||||| ||||| | |||||||||||| |||||||||||
Sbjct: 63 gaaatcaaaatctc---aacctatagtatcgatcgtcaggcaat 23
>gb|BG464783.1|BG464783 EM1_34_B03.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 299
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 251 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 192
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 191 acag-gaaatcaaaatctca 173
>gb|CF430590.1|CF430590 NIT1_3_G02.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_3_G02_A002 3', mRNA sequence
Length = 527
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 284 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 225
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 224 acag-gaaatcaaaatctca 206
Score = 52.0 bits (26), Expect = 6e-005
Identities = 48/54 (88%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccg 321
|||||| |||||| ||||||||||| ||||||||||||||||| | |||||||
Sbjct: 74 ttcttcccttctttctcctcaatggg-tctttgccttgcgataatccttgtccg 22
>gb|CF430623.1|CF430623 NIT1_3_B01.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_3_B01_A002 3', mRNA sequence
Length = 470
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 227 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 168
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 167 acag-gaaatcaaaatctca 149
>gb|CF431426.1|CF431426 NIT1_7_H02.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_7_H02_A002 3', mRNA sequence
Length = 484
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 246 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 187
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 186 acag-gaaatcaaaatctca 168
Score = 40.1 bits (20), Expect = 0.22
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtct 295
|||||| |||||| ||||||||||||||
Sbjct: 36 ttcttcccttctttctcctcaatggtct 9
>gb|CN133434.1|CN133434 OX1_12_E06.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_12_E06_A002 3', mRNA sequence
Length = 533
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 290 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 231
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 230 acag-gaaatcaaaatctca 212
Score = 54.0 bits (27), Expect = 1e-005
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| ||||||||||| ||||||||||||||||| | |||| ||||| |
Sbjct: 80 ttcttcccttctttctcctcaatgg--tctttgccttgcgataatccttgtacgtcccaa 23
Query: 328 acaacc 333
||||||
Sbjct: 22 acaacc 17
>gb|CN133512.1|CN133512 OX1_12_E06.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_12_E06_A002 5', mRNA sequence
Length = 507
Score = 111 bits (56), Expect = 7e-023
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 257 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 198
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 197 acag-gaaatcaaaatctca 179
Score = 50.1 bits (25), Expect = 2e-004
Identities = 40/44 (90%), Gaps = 2/44 (4%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataa 311
|||||| |||||| ||||||||||| |||||||||||||||||
Sbjct: 47 ttcttcccttctttctcctcaatgg--tctttgccttgcgataa 6
>gb|CX609800.1|CX609800 ANR1_14_G03.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_14_G03_A002 5', mRNA sequence
Length = 744
Score = 107 bits (54), Expect = 1e-021
Identities = 77/85 (90%)
Strand = Plus / Minus
Query: 500 ggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaacagtcttc 559
||||||||||||||||| |||||||||||| |||||||| | ||||||||||| |||| |
Sbjct: 741 ggcaggaaatttgatggtctccatgggaagtgatagccgctctgagcttcaactgtctcc 682
Query: 560 aatacccttaacaccatccacagcc 584
|||| ||| ||||||||||||||||
Sbjct: 681 aatatcctcaacaccatccacagcc 657
>gb|BG159402.1|BG159402 OV2_7_D09.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 155
Score = 105 bits (53), Expect = 4e-021
Identities = 69/73 (94%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 76 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaac 17
Query: 117 acagagaaatcaa 129
|||| ||||||||
Sbjct: 16 acag-gaaatcaa 5
>gb|BG241491.1|BG241491 RHIZ2_50_A02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 319
Score = 103 bits (52), Expect = 2e-020
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 120 atcagattcagttcatgacagaccaaggtcgccaggacctcattcttgatcataccaaac 61
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 60 acag-gaaatcaaaatctca 42
>gb|CD233128.1|CD233128 SS1_12_H08.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_12_H08_A012 3', mRNA sequence
Length = 511
Score = 103 bits (52), Expect = 2e-020
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||
Sbjct: 268 atcagattcagttcatgacaaaccaaggtcgccaggacctcattcttgatcatagcaaac 209
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 208 acag-gaaatcaaaatctca 190
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/57 (87%), Gaps = 2/57 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtcc 324
|||||| |||||| ||||||||||| || |||||||||||||| | ||||||||||
Sbjct: 58 ttcttcccttctttctcctcaatgggct--ttgccttgcgataatccttgtccgtcc 4
>gb|CF426903.1|CF426903 PH1_2_G08.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_2_G08_A002 3', mRNA sequence
Length = 618
Score = 103 bits (52), Expect = 2e-020
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 57 atcaaattcagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaac 116
|||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||
Sbjct: 291 atcagattcagttcatgacagaccaagggcgccaggacctcattcttgatcatagcaaac 232
Query: 117 acagagaaatcaacatctca 136
|||| |||||||| ||||||
Sbjct: 231 acag-gaaatcaaaatctca 213
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 268 ttcttcacttcttgctcctcaatggtctctttgccttgcgataaccattgtccgtccgga 327
|||||| |||||| |||||||||||||| |||||||||||||| | |||||||||| |
Sbjct: 81 ttcttcccttctttctcctcaatggtct--ttgccttgcgataatccttgtccgtcccaa 24
Query: 328 acaacc 333
||||||
Sbjct: 23 acaacc 18
>gb|CF489194.1|CF489194 POL1_55_G01.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_55_G01_A002 3', mRNA sequence
Length = 226
Score = 103 bits (52), Expect = 2e-020
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 65 cagttcatgacagaccaaggtcgccaggacctcgttcttgatcatagaaaacacagagaa 124
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||
Sbjct: 226 cagttcatgacagaccaaggtcgccaggacctcattcttgatcatagcaaacacag-gaa 168
Query: 125 atcaacatctca 136
||||| ||||||
Sbjct: 167 atcaaaatctca 156
>gb|CL149718.1|CL149718 104_330_10778012_114_31353_332 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10778012, DNA
sequence
Length = 725
Score = 87.7 bits (44), Expect = 1e-015
Identities = 55/59 (93%)
Strand = Plus / Minus
Query: 494 tacaggggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaac 552
||||| |||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct: 495 tacagcggcaggaaatttgatgggctccatgggaagtgatagacgctgtgagcttcaac 437
>gb|CL187772.1|CL187772 104_403_10901121_116_32465_037 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901121, DNA
sequence
Length = 664
Score = 87.7 bits (44), Expect = 1e-015
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 494 tacaggggcaggaaatttgatgggctccatgggaagngatagccggtgtgagcttcaac 552
||||| |||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct: 122 tacagcggcaggaaatttgatgggctccatgggaagtgatagacgctgtgagcttcaac 180
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 146,663
Number of Sequences: 832831
Number of extensions: 146663
Number of successful extensions: 47183
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46928
Number of HSP's gapped (non-prelim): 213
length of query: 584
length of database: 491,359,669
effective HSP length: 19
effective length of query: 565
effective length of database: 475,535,880
effective search space: 268677772200
effective search space used: 268677772200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)