BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2621786.2.1
(623 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW446095.1|CW446095 fsbb001f171j09f0 Sorghum methylation... 615 e-174
gb|CD223963.1|CD223963 CCC1_31_B06.b1_A007 Callus culture/c... 615 e-174
gb|CD228042.1|CD228042 CCC1_5_E11.b1_A007 Callus culture/ce... 615 e-174
gb|CF071963.1|CF071963 FE1_19_H07.g1_A002 Iron-deficient se... 615 e-174
gb|CW291833.1|CW291833 104_771_11413761_148_35764_037 Sorgh... 587 e-166
gb|AW746721.1|AW746721 WS1_55_E03.b1_A002 Water-stressed 1 ... 587 e-166
gb|CD204938.1|CD204938 HS1_11_B03.b1_A012 Heat-shocked seed... 587 e-166
gb|CD227974.1|CD227974 CCC1_5_D11.b1_A007 Callus culture/ce... 587 e-166
gb|CD228178.1|CD228178 CCC1_6_H06.b1_A007 Callus culture/ce... 587 e-166
gb|CD228180.1|CD228180 CCC1_6_F04.b1_A007 Callus culture/ce... 587 e-166
gb|CD428812.1|CD428812 ETH1_36_D08.b1_A002 Ethylene-treated... 587 e-166
gb|CN139455.1|CN139455 OX1_22_E04.b1_A002 Oxidatively-stres... 587 e-166
gb|CX617189.1|CX617189 GABR1_32_F03.b1_A002 GA- or brassino... 587 e-166
gb|CX619551.1|CX619551 GABR1_46_E05.b1_A002 GA- or brassino... 587 e-166
gb|CD222648.1|CD222648 CCC1_23_A04.b1_A007 Callus culture/c... 579 e-163
gb|CD428888.1|CD428888 ETH1_1_G08.b1_A002 Ethylene-treated ... 579 e-163
gb|CX607000.1|CX607000 ANR1_6_D04.b1_A002 Anaerobic roots S... 579 e-163
gb|CN135502.1|CN135502 OX1_37_E12.b1_A002 Oxidatively-stres... 571 e-161
gb|CW454046.1|CW454046 fsbb001f198e24k0 Sorghum methylation... 400 e-110
gb|CB928355.1|CB928355 ABA1_15_G01.b1_A012 Abscisic acid-tr... 357 8e-097
gb|CD220578.1|CD220578 CCC1_68_G12.b1_A007 Callus culture/c... 357 8e-097
gb|CF487355.1|CF487355 POL1_43_G02.b1_A002 Pollen Sorghum b... 355 3e-096
gb|CW291832.1|CW291832 104_771_11413761_116_35763_037 Sorgh... 347 8e-094
gb|CF482496.1|CF482496 POL1_7_G06.b1_A002 Pollen Sorghum bi... 347 8e-094
gb|CN133090.1|CN133090 OX1_10_C09.b1_A002 Oxidatively-stres... 331 4e-089
gb|CW048313.1|CW048313 104_286_10513288_114_30214 Sorghum m... 315 3e-084
gb|CF433777.1|CF433777 NIT1_30_G05.b1_A002 Nitrogen-deficie... 232 3e-059
gb|CW213854.1|CW213854 104_645_11191785_116_37034_037 Sorgh... 216 2e-054
gb|CW224331.1|CW224331 104_660_11203389_148_37198_087 Sorgh... 184 6e-045
gb|CN134283.1|CN134283 OX1_25_A03.g1_A002 Oxidatively-stres... 184 6e-045
gb|CF485855.1|CF485855 POL1_34_C10.b1_A002 Pollen Sorghum b... 149 4e-034
gb|CF482578.1|CF482578 POL1_7_G06.g1_A002 Pollen Sorghum bi... 117 1e-024
gb|AW746834.1|AW746834 WS1_55_E03.g1_A002 Water-stressed 1 ... 115 5e-024
gb|CN135580.1|CN135580 OX1_37_E12.g1_A002 Oxidatively-stres... 96 5e-018
gb|CD428824.1|CD428824 ETH1_36_D08.g1_A002 Ethylene-treated... 48 0.001
>gb|CW446095.1|CW446095 fsbb001f171j09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f171j09, DNA
sequence
Length = 647
Score = 615 bits (310), Expect = e-174
Identities = 388/414 (93%)
Strand = Plus / Minus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 623 gggactgggggttcgccggagactacgtcgaggcaatgtggctcatgctgcagcaggatc 564
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 563 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcttgcagg 504
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct: 503 ctgccttcggctacgccgggctcaactggaaggatcatgtggtcattgacaagaagtact 444
Query: 192 tccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaaggtgctca 251
||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct: 443 tccggcctgcagaggtcgacagcctcaagggagactccaccaaggccaggaaggtgctca 384
Query: 252 agtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacgacattg 311
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 383 aatggaagcccaaggttgggttccagcagctcgtggagatgatggttgatcacgacattg 324
Query: 312 agctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagcagcagc 371
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 323 agctcgccaagaaggagaaggtcctggtggatgctgggtaccgtgatcccaagcagcagc 264
Query: 372 catagaaacatcacagttgcttcttgctctgttggggctcggattcagattgtt 425
||||| |||| ||||| ||||||||||| | ||||| |||||| |||||||||
Sbjct: 263 cataggaacagcacagatgcttcttgcttttttgggaatcggatacagattgtt 210
Score = 200 bits (101), Expect = 1e-049
Identities = 148/161 (91%), Gaps = 2/161 (1%)
Strand = Plus / Minus
Query: 454 agaggttgaccgaagttactatcgatat-ttatcctggtaagaaataaggattgttgcag 512
|||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 172 agaggttgaccggagttactatcgataacttctcctggtaagaaataaggatgattgcag 113
Query: 513 tatgatcttacagtgtgttcatttacttttctgactatgttatgtgctttaatcgaatga 572
|||||| | | ||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 112 tatgatgtcatagtatcttcatttacttttctgactatgttatgtgctttaatcaaatga 53
Query: 573 atgaataatccatgccaatttggtatttggaagaggatgat 613
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 52 atgaataatccatgccaatttggta-ttggaagaggatgat 13
>gb|CD223963.1|CD223963 CCC1_31_B06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_31_B06_A007 3', mRNA sequence
Length = 606
Score = 615 bits (310), Expect = e-174
Identities = 388/414 (93%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 7 gggactgggggttcgccggagactacgtcgaggcaatgtggctcatgctgcagcaggatc 66
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 67 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcttgcagg 126
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct: 127 ctgccttcggctacgccgggctcaactggaaggatcatgtggtcattgacaagaagtact 186
Query: 192 tccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaaggtgctca 251
||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct: 187 tccggcctgcagaggtcgacagcctcaagggagactccaccaaggccaggaaggtgctca 246
Query: 252 agtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacgacattg 311
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 247 aatggaagcccaaggttgggttccagcagctcgtggagatgatggttgatcacgacattg 306
Query: 312 agctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagcagcagc 371
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 307 agctcgccaagaaggagaaggtcctggtggatgctgggtaccgtgatcccaagcagcagc 366
Query: 372 catagaaacatcacagttgcttcttgctctgttggggctcggattcagattgtt 425
||||| |||| ||||| ||||||||||| | ||||| |||||| |||||||||
Sbjct: 367 cataggaacagcacagatgcttcttgcttttttgggaatcggatacagattgtt 420
Score = 188 bits (95), Expect = 4e-046
Identities = 135/147 (91%), Gaps = 1/147 (0%)
Strand = Plus / Plus
Query: 454 agaggttgaccgaagttactatcgatat-ttatcctggtaagaaataaggattgttgcag 512
|||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 458 agaggttgaccggagttactatcgataacttctcctggtaagaaataaggatgattgcag 517
Query: 513 tatgatcttacagtgtgttcatttacttttctgactatgttatgtgctttaatcgaatga 572
|||||| | | ||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 518 tatgatgtcatagtatcttcatttacttttctgactatgttatgtgctttaatcaaatga 577
Query: 573 atgaataatccatgccaatttggtatt 599
|||||||||||||||||||||||||||
Sbjct: 578 atgaataatccatgccaatttggtatt 604
>gb|CD228042.1|CD228042 CCC1_5_E11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_5_E11_A007 3', mRNA sequence
Length = 636
Score = 615 bits (310), Expect = e-174
Identities = 388/414 (93%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 35 gggactgggggttcgccggagactacgtcgaggcaatgtggctcatgctgcagcaggatc 94
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 95 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcttgcagg 154
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct: 155 ctgccttcggctacgccgggctcaactggaaggatcatgtggtcattgacaagaagtact 214
Query: 192 tccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaaggtgctca 251
||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct: 215 tccggcctgcagaggtcgacagcctcaagggagactccaccaaggccaggaaggtgctca 274
Query: 252 agtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacgacattg 311
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 275 aatggaagcccaaggttgggttccagcagctcgtggagatgatggttgatcacgacattg 334
Query: 312 agctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagcagcagc 371
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 335 agctcgccaagaaggagaaggtcctggtggatgctgggtaccgtgatcccaagcagcagc 394
Query: 372 catagaaacatcacagttgcttcttgctctgttggggctcggattcagattgtt 425
||||| |||| ||||| ||||||||||| | ||||| |||||| |||||||||
Sbjct: 395 cataggaacagcacagatgcttcttgcttttttgggaatcggatacagattgtt 448
Score = 178 bits (90), Expect = 4e-043
Identities = 130/142 (91%), Gaps = 1/142 (0%)
Strand = Plus / Plus
Query: 454 agaggttgaccgaagttactatcgatat-ttatcctggtaagaaataaggattgttgcag 512
|||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 486 agaggttgaccggagttactatcgataacttctcctggtaagaaataaggatgattgcag 545
Query: 513 tatgatcttacagtgtgttcatttacttttctgactatgttatgtgctttaatcgaatga 572
|||||| | | ||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 546 tatgatgtcatagtatcttcatttacttttctgactatgttatgtgctttaatcaaatga 605
Query: 573 atgaataatccatgccaatttg 594
||||||||||||||||||||||
Sbjct: 606 atgaataatccatgccaatttg 627
>gb|CF071963.1|CF071963 FE1_19_H07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_19_H07_A002 5', mRNA sequence
Length = 628
Score = 615 bits (310), Expect = e-174
Identities = 388/414 (93%)
Strand = Plus / Minus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 544 gggactgggggttcgccggagactacgtcgaggcaatgtggctcatgctgcagcaggatc 485
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 484 agccggccgattacgtcgtcgccgctgaggagtcccacaccgtcgaggagttcttgcagg 425
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct: 424 ctgccttcggctacgccgggctcaactggaaggatcatgtggtcattgacaagaagtact 365
Query: 192 tccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaaggtgctca 251
||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 364 tccggcctgcagaggtcgacagcctcaagggggactccaccaaggccaggaaggtgctca 305
Query: 252 agtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacgacattg 311
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 304 aatggaagcccaaggttgggttccagcagctcgtggagatgatggttgatcacgacattg 245
Query: 312 agctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagcagcagc 371
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 244 agctcgccaagaaggagaaggtcctggtggatgctgggtaccgtgatcccaagcagcagc 185
Query: 372 catagaaacatcacagttgcttcttgctctgttggggctcggattcagattgtt 425
||||| |||| ||||| ||||||||||| | ||||| |||||| |||||||||
Sbjct: 184 cataggaacagcacagatgcttcttgcttttttgggaatcggatacagattgtt 131
Score = 75.8 bits (38), Expect = 4e-012
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 454 agaggttgaccgaagttactatcgatat-ttatcctggtaagaaataaggattgttgcag 512
|||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 93 agaggttgaccggagttactatcgataacttctcctggtaagaaataaggatgattgcag 34
Query: 513 tatgat 518
||||||
Sbjct: 33 tatgat 28
>gb|CW291833.1|CW291833 104_771_11413761_148_35764_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11413761, DNA
sequence
Length = 641
Score = 587 bits (296), Expect = e-166
Identities = 371/396 (93%)
Strand = Plus / Minus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 506 gggactggggtttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggatc 447
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 446 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcttgcagg 387
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct: 386 ctgccttcggctacgccgggctcaactggaaggatcatgtggtcattgacaagaagtact 327
Query: 192 tccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaaggtgctca 251
||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 326 tccggccagcagaggtcgacagcctcaagggggactccaccaaggccaggaaggtgctca 267
Query: 252 agtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacgacattg 311
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 266 aatggaagcccaaggttgggttccagcagctcgtggagatgatggttgatcacgacattg 207
Query: 312 agctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagcagcagc 371
|||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||
Sbjct: 206 agctcgccaagaaggagaaggtcctggtggatgctggataccgtgaccccaagcagcagc 147
Query: 372 catagaaacatcacagttgcttcttgctctgttggg 407
||||| |||| ||| |||| ||||||||||||||
Sbjct: 146 cataggaacagtgcagatgctccttgctctgttggg 111
Score = 79.8 bits (40), Expect = 3e-013
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 432 atacatggtggttctcaggggtagaggttgaccgaagttactatcgatatttatcctggt 491
|||||||||||||||||| | ||||||||||| ||||||| |||||||| || | |||||
Sbjct: 71 atacatggtggttctcagag-tagaggttgacggaagttattatcgatacttcttctggt 13
Query: 492 aagaaataagga 503
||||||||||||
Sbjct: 12 aagaaataagga 1
>gb|AW746721.1|AW746721 WS1_55_E03.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 478
Score = 587 bits (296), Expect = e-166
Identities = 371/396 (93%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 66 gggactggggtttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggatc 125
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 126 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcttgcagg 185
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct: 186 ctgccttcggctacgccgggctcaactggaaggatcatgtggtcattgacaagaagtact 245
Query: 192 tccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaaggtgctca 251
||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 246 tccggccagcagaggtcgacagcctcaagggggactccaccaaggccaggaaggtgctca 305
Query: 252 agtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacgacattg 311
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 306 aatggaagcccaaggttgggttccagcagctcgtggagatgatggttgatcacgacattg 365
Query: 312 agctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagcagcagc 371
|||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||
Sbjct: 366 agctcgccaagaaggagaaggtcctggtggatgctggataccgtgaccccaagcagcagc 425
Query: 372 catagaaacatcacagttgcttcttgctctgttggg 407
||||| |||| ||| |||| ||||||||||||||
Sbjct: 426 cataggaacagtgcagatgctccttgctctgttggg 461
>gb|CD204938.1|CD204938 HS1_11_B03.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_11_B03_A012 3', mRNA sequence
Length = 602
Score = 587 bits (296), Expect = e-166
Identities = 371/396 (93%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 7 gggactggggtttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggatc 66
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 67 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcttgcagg 126
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct: 127 ctgccttcggctacgccgggctcaactggaaggatcatgtggtcattgacaagaagtact 186
Query: 192 tccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaaggtgctca 251
||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 187 tccggccagcagaggtcgacagcctcaagggggactccaccaaggccaggaaggtgctca 246
Query: 252 agtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacgacattg 311
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 247 aatggaagcccaaggttgggttccagcagctcgtggagatgatggttgatcacgacattg 306
Query: 312 agctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagcagcagc 371
|||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||
Sbjct: 307 agctcgccaagaaggagaaggtcctggtggatgctggataccgtgaccccaagcagcagc 366
Query: 372 catagaaacatcacagttgcttcttgctctgttggg 407
||||| |||| ||| |||| ||||||||||||||
Sbjct: 367 cataggaacagtgcagatgctccttgctctgttggg 402
Score = 137 bits (69), Expect = 1e-030
Identities = 112/125 (89%), Gaps = 1/125 (0%)
Strand = Plus / Plus
Query: 454 agaggttgaccgaagttactatcgatatttatcctggtaagaaataaggattgttgcagt 513
|||||||||| ||||||| |||||||| || | |||||||||||||||||| ||||||||
Sbjct: 465 agaggttgacggaagttattatcgatacttcttctggtaagaaataaggatggttgcagt 524
Query: 514 atgatcttacagtgtgttcatttacttttctgactatgttatgtgctttaatcgaatgaa 573
||||||| ||||| | |||| |||||||||||||||||||||| |||||||| ||||||
Sbjct: 525 atgatctcacagtatcttca-ttacttttctgactatgttatgcactttaatcaaatgaa 583
Query: 574 tgaat 578
|||||
Sbjct: 584 tgaat 588
>gb|CD227974.1|CD227974 CCC1_5_D11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_5_D11_A007 3', mRNA sequence
Length = 600
Score = 587 bits (296), Expect = e-166
Identities = 371/396 (93%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 8 gggactggggtttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggatc 67
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 68 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcttgcagg 127
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct: 128 ctgccttcggctacgccgggctcaactggaaggatcatgtggtcattgacaagaagtact 187
Query: 192 tccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaaggtgctca 251
||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 188 tccggccagcagaggtcgacagcctcaagggggactccaccaaggccaggaaggtgctca 247
Query: 252 agtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacgacattg 311
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 248 aatggaagcccaaggttgggttccagcagctcgtggagatgatggttgatcacgacattg 307
Query: 312 agctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagcagcagc 371
|||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||
Sbjct: 308 agctcgccaagaaggagaaggtcctggtggatgctggataccgtgaccccaagcagcagc 367
Query: 372 catagaaacatcacagttgcttcttgctctgttggg 407
||||| |||| ||| |||| ||||||||||||||
Sbjct: 368 cataggaacagtgcagatgctccttgctctgttggg 403
Score = 155 bits (78), Expect = 6e-036
Identities = 131/146 (89%), Gaps = 2/146 (1%)
Strand = Plus / Plus
Query: 432 atacatggtggttctcaggggtagaggttgaccgaagttactatcgatatttatcctggt 491
|||||||||||||||||| | ||||||||||| ||||||| |||||||| || | |||||
Sbjct: 443 atacatggtggttctcagag-tagaggttgacggaagttattatcgatacttcttctggt 501
Query: 492 aagaaataaggattgttgcagtatgatcttacagtgtgttcatttacttttctgactatg 551
||||||||||||| ||||||||||||||| ||||| | |||| |||||||||||||||||
Sbjct: 502 aagaaataaggatggttgcagtatgatctcacagtatcttca-ttacttttctgactatg 560
Query: 552 ttatgtgctttaatcgaatgaatgaa 577
||||| |||||||| ||||||||||
Sbjct: 561 ttatgcactttaatcaaatgaatgaa 586
>gb|CD228178.1|CD228178 CCC1_6_H06.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_H06_A007 3', mRNA sequence
Length = 611
Score = 587 bits (296), Expect = e-166
Identities = 371/396 (93%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 109 gggactggggtttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggatc 168
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 169 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcttgcagg 228
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct: 229 ctgccttcggctacgccgggctcaactggaaggatcatgtggtcattgacaagaagtact 288
Query: 192 tccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaaggtgctca 251
||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 289 tccggccagcagaggtcgacagcctcaagggggactccaccaaggccaggaaggtgctca 348
Query: 252 agtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacgacattg 311
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 349 aatggaagcccaaggttgggttccagcagctcgtggagatgatggttgatcacgacattg 408
Query: 312 agctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagcagcagc 371
|||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||
Sbjct: 409 agctcgccaagaaggagaaggtcctggtggatgctggataccgtgaccccaagcagcagc 468
Query: 372 catagaaacatcacagttgcttcttgctctgttggg 407
||||| |||| ||| |||| ||||||||||||||
Sbjct: 469 cataggaacagtgcagatgctccttgctctgttggg 504
Score = 63.9 bits (32), Expect = 2e-008
Identities = 63/71 (88%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 432 atacatggtggttctcaggggtagaggttgaccgaagttactatcgatatttatcctggt 491
|||||||||||||||||| | ||||||||||| ||||||| |||||||||| || |||
Sbjct: 544 atacatggtggttctcagag-tagaggttgacggaagttattatcgatattcttc--ggt 600
Query: 492 aagaaataagg 502
|||||||||||
Sbjct: 601 aagaaataagg 611
>gb|CD228180.1|CD228180 CCC1_6_F04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_6_F04_A007 3', mRNA sequence
Length = 596
Score = 587 bits (296), Expect = e-166
Identities = 371/396 (93%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5 gggactggggtttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggatc 64
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 65 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcttgcagg 124
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct: 125 ctgccttcggctacgccgggctcaactggaaggatcatgtggtcattgacaagaagtact 184
Query: 192 tccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaaggtgctca 251
||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 185 tccggccagcagaggtcgacagcctcaagggggactccaccaaggccaggaaggtgctca 244
Query: 252 agtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacgacattg 311
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 245 aatggaagcccaaggttgggttccagcagctcgtggagatgatggttgatcacgacattg 304
Query: 312 agctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagcagcagc 371
|||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||
Sbjct: 305 agctcgccaagaaggagaaggtcctggtggatgctggataccgtgaccccaagcagcagc 364
Query: 372 catagaaacatcacagttgcttcttgctctgttggg 407
||||| |||| ||| |||| ||||||||||||||
Sbjct: 365 cataggaacagtgcagatgctccttgctctgttggg 400
Score = 157 bits (79), Expect = 1e-036
Identities = 132/147 (89%), Gaps = 2/147 (1%)
Strand = Plus / Plus
Query: 432 atacatggtggttctcaggggtagaggttgaccgaagttactatcgatatttatcctggt 491
|||||||||||||||||| | ||||||||||| ||||||| |||||||| || | |||||
Sbjct: 440 atacatggtggttctcagag-tagaggttgacggaagttattatcgatacttcttctggt 498
Query: 492 aagaaataaggattgttgcagtatgatcttacagtgtgttcatttacttttctgactatg 551
||||||||||||| ||||||||||||||| ||||| | |||| |||||||||||||||||
Sbjct: 499 aagaaataaggatggttgcagtatgatctcacagtatcttca-ttacttttctgactatg 557
Query: 552 ttatgtgctttaatcgaatgaatgaat 578
||||| |||||||| |||||||||||
Sbjct: 558 ttatgcactttaatcaaatgaatgaat 584
>gb|CD428812.1|CD428812 ETH1_36_D08.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_36_D08_A002 3', mRNA sequence
Length = 537
Score = 587 bits (296), Expect = e-166
Identities = 371/396 (93%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 10 gggactggggtttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggatc 69
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 70 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcttgcagg 129
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct: 130 ctgccttcggctacgccgggctcaactggaaggatcatgtggtcattgacaagaagtact 189
Query: 192 tccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaaggtgctca 251
||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 190 tccggccagcagaggtcgacagcctcaagggggactccaccaaggccaggaaggtgctca 249
Query: 252 agtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacgacattg 311
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 250 aatggaagcccaaggttgggttccagcagctcgtggagatgatggttgatcacgacattg 309
Query: 312 agctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagcagcagc 371
|||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||
Sbjct: 310 agctcgccaagaaggagaaggtcctggtggatgctggataccgtgaccccaagcagcagc 369
Query: 372 catagaaacatcacagttgcttcttgctctgttggg 407
||||| |||| ||| |||| ||||||||||||||
Sbjct: 370 cataggaacagtgcagatgctccttgctctgttggg 405
Score = 107 bits (54), Expect = 1e-021
Identities = 85/94 (90%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 432 atacatggtggttctcaggggtagaggttgaccgaagttactatcgatatttatcctggt 491
|||||||||||||||||| | ||||||||||| ||||||| |||||||| || | |||||
Sbjct: 445 atacatggtggttctcagag-tagaggttgacggaagttattatcgatacttcttctggt 503
Query: 492 aagaaataaggattgttgcagtatgatcttacag 525
||||||||||||| ||||||||||||||| ||||
Sbjct: 504 aagaaataaggatggttgcagtatgatctcacag 537
>gb|CN139455.1|CN139455 OX1_22_E04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_22_E04_A002 3', mRNA sequence
Length = 775
Score = 587 bits (296), Expect = e-166
Identities = 371/396 (93%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 199 gggactggggtttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggatc 258
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 259 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcttgcagg 318
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct: 319 ctgccttcggctacgccgggctcaactggaaggatcatgtggtcattgacaagaagtact 378
Query: 192 tccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaaggtgctca 251
||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 379 tccggccagcagaggtcgacagcctcaagggggactccaccaaggccaggaaggtgctca 438
Query: 252 agtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacgacattg 311
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 439 aatggaagcccaaggttgggttccagcagctcgtggagatgatggttgatcacgacattg 498
Query: 312 agctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagcagcagc 371
|||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||
Sbjct: 499 agctcgccaagaaggagaaggtcctggtggatgctggataccgtgaccccaagcagcagc 558
Query: 372 catagaaacatcacagttgcttcttgctctgttggg 407
||||| |||| ||| |||| ||||||||||||||
Sbjct: 559 cataggaacagtgcagatgctccttgctctgttggg 594
Score = 143 bits (72), Expect = 2e-032
Identities = 128/144 (88%), Gaps = 2/144 (1%)
Strand = Plus / Plus
Query: 432 atacatggtggttctcaggggtagaggttgaccgaagttactatcgatatttatcctggt 491
||||||||||| |||||| | ||||||||||| ||||||| |||||||| || | |||||
Sbjct: 634 atacatggtggctctcagag-tagaggttgacggaagttattatcgatacttcttctggt 692
Query: 492 aagaaataaggattgttgcagtatgatcttacagtgtgttcatttacttttctgactatg 551
||||||||||||| ||||||||||||||| ||||| | |||| |||||||||||||||||
Sbjct: 693 aagaaataaggatggttgcagtatgatctcacagtatcttca-ttacttttctgactatg 751
Query: 552 ttatgtgctttaatcgaatgaatg 575
||||| |||||||| ||||||||
Sbjct: 752 ttatgcactttaatcaaatgaatg 775
>gb|CX617189.1|CX617189 GABR1_32_F03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_32_F03_A002 3', mRNA sequence
Length = 756
Score = 587 bits (296), Expect = e-166
Identities = 371/396 (93%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 112 gggactggggtttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggatc 171
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 172 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcttgcagg 231
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct: 232 ctgccttcggctacgccgggctcaactggaaggatcatgtggtcattgacaagaagtact 291
Query: 192 tccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaaggtgctca 251
||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 292 tccggccagcagaggtcgacagcctcaagggggactccaccaaggccaggaaggtgctca 351
Query: 252 agtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacgacattg 311
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 352 aatggaagcccaaggttgggttccagcagctcgtggagatgatggttgatcacgacattg 411
Query: 312 agctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagcagcagc 371
|||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||
Sbjct: 412 agctcgccaagaaggagaaggtcctggtggatgctggataccgtgaccccaagcagcagc 471
Query: 372 catagaaacatcacagttgcttcttgctctgttggg 407
||||| |||| ||| |||| ||||||||||||||
Sbjct: 472 cataggaacagtgcagatgctccttgctctgttggg 507
Score = 176 bits (89), Expect = 2e-042
Identities = 165/186 (88%), Gaps = 7/186 (3%)
Strand = Plus / Plus
Query: 432 atacatggtggttctcaggggtagaggttgaccgaagttactatcgatatttatcctggt 491
|||||||||||||||||| | ||||||||||| ||||||| |||||||| || | |||||
Sbjct: 547 atacatggtggttctcagag-tagaggttgacggaagttattatcgatacttcttctggt 605
Query: 492 aagaaataaggattgttgcagtatgatcttacagtgtgttcatttacttttctgactatg 551
||||||||||||| ||||||||||||||| ||||| | |||| |||||||||||||||||
Sbjct: 606 aagaaataaggatggttgcagtatgatctcacagtatcttca-ttacttttctgactatg 664
Query: 552 ttatgtgctttaatc----gaatgaatgaataatccatgccaatttggtatttggaagag 607
||||| |||||||| ||||||||||||||| ||||||||||| ||| |||||||||
Sbjct: 665 ttatgcactttaatcaaatgaatgaatgaataattcatgccaattttgta-ttggaagag 723
Query: 608 gatgat 613
||||||
Sbjct: 724 gatgat 729
>gb|CX619551.1|CX619551 GABR1_46_E05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_46_E05_A002 3', mRNA sequence
Length = 706
Score = 587 bits (296), Expect = e-166
Identities = 371/396 (93%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 121 gggactggggtttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggatc 180
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 181 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcttgcagg 240
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct: 241 ctgccttcggctacgccgggctcaactggaaggatcatgtggtcattgacaagaagtact 300
Query: 192 tccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaaggtgctca 251
||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 301 tccggccagcagaggtcgacagcctcaagggggactccaccaaggccaggaaggtgctca 360
Query: 252 agtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacgacattg 311
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 361 aatggaagcccaaggttgggttccagcagctcgtggagatgatggttgatcacgacattg 420
Query: 312 agctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagcagcagc 371
|||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||
Sbjct: 421 agctcgccaagaaggagaaggtcctggtggatgctggataccgtgaccccaagcagcagc 480
Query: 372 catagaaacatcacagttgcttcttgctctgttggg 407
||||| |||| ||| |||| ||||||||||||||
Sbjct: 481 cataggaacagtgcagatgctccttgctctgttggg 516
Score = 157 bits (79), Expect = 1e-036
Identities = 132/147 (89%), Gaps = 2/147 (1%)
Strand = Plus / Plus
Query: 432 atacatggtggttctcaggggtagaggttgaccgaagttactatcgatatttatcctggt 491
|||||||||||||||||| | ||||||||||| ||||||| |||||||| || | |||||
Sbjct: 556 atacatggtggttctcagag-tagaggttgacggaagttattatcgatacttcttctggt 614
Query: 492 aagaaataaggattgttgcagtatgatcttacagtgtgttcatttacttttctgactatg 551
||||||||||||| ||||||||||||||| ||||| | |||| |||||||||||||||||
Sbjct: 615 aagaaataaggatggttgcagtatgatctcacagtatcttca-ttacttttctgactatg 673
Query: 552 ttatgtgctttaatcgaatgaatgaat 578
||||| |||||||| |||||||||||
Sbjct: 674 ttatgcactttaatcaaatgaatgaat 700
>gb|CD222648.1|CD222648 CCC1_23_A04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_23_A04_A007 3', mRNA sequence
Length = 595
Score = 579 bits (292), Expect = e-163
Identities = 370/396 (93%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 8 gggactggggtttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggatc 67
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 68 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcttgcagg 127
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| | || |||||||||||| ||||||||||||||||||||||
Sbjct: 128 ctgccttcggctacgccgggcccaactggaaggatcatgtggtcattgacaagaagtact 187
Query: 192 tccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaaggtgctca 251
||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 188 tccggccagcagaggtcgacagcctcaagggggactccaccaaggccaggaaggtgctca 247
Query: 252 agtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacgacattg 311
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 248 aatggaagcccaaggttgggttccagcagctcgtggagatgatggttgatcacgacattg 307
Query: 312 agctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagcagcagc 371
|||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||
Sbjct: 308 agctcgccaagaaggagaaggtcctggtggatgctggataccgtgaccccaagcagcagc 367
Query: 372 catagaaacatcacagttgcttcttgctctgttggg 407
||||| |||| ||| |||| ||||||||||||||
Sbjct: 368 cataggaacagtgcagatgctccttgctctgttggg 403
Score = 157 bits (79), Expect = 1e-036
Identities = 132/147 (89%), Gaps = 2/147 (1%)
Strand = Plus / Plus
Query: 432 atacatggtggttctcaggggtagaggttgaccgaagttactatcgatatttatcctggt 491
|||||||||||||||||| | ||||||||||| ||||||| |||||||| || | |||||
Sbjct: 443 atacatggtggttctcagag-tagaggttgacggaagttattatcgatacttcttctggt 501
Query: 492 aagaaataaggattgttgcagtatgatcttacagtgtgttcatttacttttctgactatg 551
||||||||||||| ||||||||||||||| ||||| | |||| |||||||||||||||||
Sbjct: 502 aagaaataaggatggttgcagtatgatctcacagtatcttca-ttacttttctgactatg 560
Query: 552 ttatgtgctttaatcgaatgaatgaat 578
||||| |||||||| |||||||||||
Sbjct: 561 ttatgcactttaatcaaatgaatgaat 587
>gb|CD428888.1|CD428888 ETH1_1_G08.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_1_G08_A002 3', mRNA sequence
Length = 612
Score = 579 bits (292), Expect = e-163
Identities = 370/396 (93%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 85 gggactggggtttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggatc 144
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 145 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcttgcagg 204
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct: 205 ctgccttcggctacgccgggctcaactggaaggatcatgtggtcattgacaagaagtact 264
Query: 192 tccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaaggtgctca 251
||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 265 tccggccagcagaggtcgacagcctcaagggggactccaccaaggccaggaaggtgctca 324
Query: 252 agtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacgacattg 311
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 325 aatggaagcccaaggttgggttccagcagctcgtggagatgatggttgatcacgacattg 384
Query: 312 agctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagcagcagc 371
|||||||||||||||||||||| |||||||||||||| | |||||| ||||| |||||||
Sbjct: 385 agctcgccaagaaggagaaggtcctggtggatgctggataccgtgaccccaaacagcagc 444
Query: 372 catagaaacatcacagttgcttcttgctctgttggg 407
||||| |||| ||| |||| ||||||||||||||
Sbjct: 445 cataggaacagtgcagatgctccttgctctgttggg 480
Score = 107 bits (54), Expect = 1e-021
Identities = 85/94 (90%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 432 atacatggtggttctcaggggtagaggttgaccgaagttactatcgatatttatcctggt 491
|||||||||||||||||| | ||||||||||| ||||||| |||||||| || | |||||
Sbjct: 520 atacatggtggttctcagag-tagaggttgacggaagttattatcgatacttcttctggt 578
Query: 492 aagaaataaggattgttgcagtatgatcttacag 525
||||||||||||| ||||||||||||||| ||||
Sbjct: 579 aagaaataaggatggttgcagtatgatctcacag 612
>gb|CX607000.1|CX607000 ANR1_6_D04.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_6_D04_A002 3', mRNA sequence
Length = 728
Score = 579 bits (292), Expect = e-163
Identities = 370/396 (93%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 135 gggactggggtttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggatc 194
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 195 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcttgcagg 254
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||||||
Sbjct: 255 ctgccttcggctacgccgggctcaactggaagaatcatgtggtcattgacaagaagtact 314
Query: 192 tccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaaggtgctca 251
||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 315 tccggccagcagaggtcgacagcctcaagggggactccaccaaggccaggaaggtgctca 374
Query: 252 agtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacgacattg 311
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 375 aatggaagcccaaggttgggttccagcagctcgtggagatgatggttgatcacgacattg 434
Query: 312 agctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagcagcagc 371
|||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||
Sbjct: 435 agctcgccaagaaggagaaggtcctggtggatgctggataccgtgaccccaagcagcagc 494
Query: 372 catagaaacatcacagttgcttcttgctctgttggg 407
||||| |||| ||| |||| ||||||||||||||
Sbjct: 495 cataggaacagtgcagatgctccttgctctgttggg 530
Score = 157 bits (79), Expect = 1e-036
Identities = 132/147 (89%), Gaps = 2/147 (1%)
Strand = Plus / Plus
Query: 432 atacatggtggttctcaggggtagaggttgaccgaagttactatcgatatttatcctggt 491
|||||||||||||||||| | ||||||||||| ||||||| |||||||| || | |||||
Sbjct: 570 atacatggtggttctcagag-tagaggttgacggaagttattatcgatacttcttctggt 628
Query: 492 aagaaataaggattgttgcagtatgatcttacagtgtgttcatttacttttctgactatg 551
||||||||||||| ||||||||||||||| ||||| | |||| |||||||||||||||||
Sbjct: 629 aagaaataaggatggttgcagtatgatctcacagtatcttca-ttacttttctgactatg 687
Query: 552 ttatgtgctttaatcgaatgaatgaat 578
||||| |||||||| |||||||||||
Sbjct: 688 ttatgcactttaatcaaatgaatgaat 714
>gb|CN135502.1|CN135502 OX1_37_E12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_37_E12_A002 3', mRNA sequence
Length = 724
Score = 571 bits (288), Expect = e-161
Identities = 369/396 (93%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 131 gggactggggtttcgcgggggactacgtcgaggcaatgtggctcatgttgcagcaggatc 190
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 191 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcttgcagg 250
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct: 251 ctgccttcggctacgccgggctcaactggaaggatcatgtggtcattgacaagaagtact 310
Query: 192 tccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaaggtgctca 251
||||||| ||||| ||||||||||||||||||||| || ||||||| |||||||||||||
Sbjct: 311 tccggccagcagaggtcgacagcctcaagggggactccgccaaggccaggaaggtgctca 370
Query: 252 agtggaagcccaaggttgggttccaggagctcgtggagatgatggtcgatcacgacattg 311
| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 371 aatggaagcccaaggttgggttccagcagctcgtggagatgatggttgatcacgacattg 430
Query: 312 agctcgccaagaaggagaaggttctggtggatgctgggttccgtgatcccaagcagcagc 371
|||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||
Sbjct: 431 agctcgccaagaaggagaaggtcctggtggatgctggataccgtgaccccaagcagcagc 490
Query: 372 catagaaacatcacagttgcttcttgctctgttggg 407
||||| |||| ||| |||| ||||||||||||||
Sbjct: 491 cataggaacagtgcagatgctccttgctctgttggg 526
Score = 157 bits (79), Expect = 1e-036
Identities = 132/147 (89%), Gaps = 2/147 (1%)
Strand = Plus / Plus
Query: 432 atacatggtggttctcaggggtagaggttgaccgaagttactatcgatatttatcctggt 491
|||||||||||||||||| | ||||||||||| ||||||| |||||||| || | |||||
Sbjct: 566 atacatggtggttctcagag-tagaggttgacggaagttattatcgatacttcttctggt 624
Query: 492 aagaaataaggattgttgcagtatgatcttacagtgtgttcatttacttttctgactatg 551
||||||||||||| ||||||||||||||| ||||| | |||| |||||||||||||||||
Sbjct: 625 aagaaataaggatggttgcagtatgatctcacagtatcttca-ttacttttctgactatg 683
Query: 552 ttatgtgctttaatcgaatgaatgaat 578
||||| |||||||| |||||||||||
Sbjct: 684 ttatgcactttaatcaaatgaatgaat 710
>gb|CW454046.1|CW454046 fsbb001f198e24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f198e24, DNA
sequence
Length = 706
Score = 400 bits (202), Expect = e-110
Identities = 244/258 (94%)
Strand = Plus / Minus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 273 gggactgggggttcgccggagactacgtcgaggcaatgtggctcatgctgcagcaggatc 214
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 213 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcttgcagg 154
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct: 153 ctgccttcggctacgccgggctcaactggaaggatcatgtggtcattgacaagaagtact 94
Query: 192 tccggcctgcagaagtcgacagcctcaagggggacgccaccaaggcgaggaaggtgctca 251
||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct: 93 tccggcctgcagaggtcgacagcctcaagggagactccaccaaggccaggaaggtgctca 34
Query: 252 agtggaagcccaaggttg 269
| ||||||||||||||||
Sbjct: 33 aatggaagcccaaggttg 16
>gb|CB928355.1|CB928355 ABA1_15_G01.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_15_G01_A012 3', mRNA sequence
Length = 459
Score = 357 bits (180), Expect = 8e-097
Identities = 237/256 (92%)
Strand = Plus / Plus
Query: 152 ctcagctggaaggatcacgtggtcattgacaagaagtacttccggcctgcagaagtcgac 211
|||| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 5 ctcaactggaaggatcatgtggtcattgacaagaagtacttccggccagcagaggtcgac 64
Query: 212 agcctcaagggggacgccaccaaggcgaggaaggtgctcaagtggaagcccaaggttggg 271
||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 65 agcctcaagggggactccaccaaggccaggaaggtgctcaaatggaagcccaaggttggg 124
Query: 272 ttccaggagctcgtggagatgatggtcgatcacgacattgagctcgccaagaaggagaag 331
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 125 ttccagcagctcgtggagatgatggttgatcacgacattgagctcgccaagaaggagaag 184
Query: 332 gttctggtggatgctgggttccgtgatcccaagcagcagccatagaaacatcacagttgc 391
|| |||||||||||||| | |||||| |||||||||||||||||| |||| ||| |||
Sbjct: 185 gtcctggtggatgctggataccgtgaccccaagcagcagccataggaacagtgcagatgc 244
Query: 392 ttcttgctctgttggg 407
| ||||||||||||||
Sbjct: 245 tccttgctctgttggg 260
Score = 129 bits (65), Expect = 3e-028
Identities = 111/125 (88%), Gaps = 1/125 (0%)
Strand = Plus / Plus
Query: 454 agaggttgaccgaagttactatcgatatttatcctggtaagaaataaggattgttgcagt 513
|||||||||| ||||||| |||||||| || | |||||||||||||||||| ||||||||
Sbjct: 323 agaggttgacggaagttattatcgatacttcttctggtaagaaataaggatggttgcagt 382
Query: 514 atgatcttacagtgtgttcatttacttttctgactatgttatgtgctttaatcgaatgaa 573
||||||| ||||| | ||| |||||||||||||||||||||| |||||||| ||||||
Sbjct: 383 atgatctcacagtatcctca-ttacttttctgactatgttatgcactttaatcaaatgaa 441
Query: 574 tgaat 578
|||||
Sbjct: 442 tgaat 446
>gb|CD220578.1|CD220578 CCC1_68_G12.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_68_G12_A007 3', mRNA sequence
Length = 457
Score = 357 bits (180), Expect = 8e-097
Identities = 237/256 (92%)
Strand = Plus / Plus
Query: 152 ctcagctggaaggatcacgtggtcattgacaagaagtacttccggcctgcagaagtcgac 211
|||| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 5 ctcaactggaaggatcatgtggtcattgacaagaagtacttccggccagcagaggtcgac 64
Query: 212 agcctcaagggggacgccaccaaggcgaggaaggtgctcaagtggaagcccaaggttggg 271
||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 65 agcctcaagggggactccaccaaggccaggaaggtgctcaaatggaagcccaaggttggg 124
Query: 272 ttccaggagctcgtggagatgatggtcgatcacgacattgagctcgccaagaaggagaag 331
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 125 ttccagcagctcgtggagatgatggttgatcacgacattgagctcgccaagaaggagaag 184
Query: 332 gttctggtggatgctgggttccgtgatcccaagcagcagccatagaaacatcacagttgc 391
|| |||||||||||||| | |||||| |||||||||||||||||| |||| ||| |||
Sbjct: 185 gtcctggtggatgctggataccgtgaccccaagcagcagccataggaacagtgcagatgc 244
Query: 392 ttcttgctctgttggg 407
| ||||||||||||||
Sbjct: 245 tccttgctctgttggg 260
Score = 157 bits (79), Expect = 1e-036
Identities = 132/147 (89%), Gaps = 2/147 (1%)
Strand = Plus / Plus
Query: 432 atacatggtggttctcaggggtagaggttgaccgaagttactatcgatatttatcctggt 491
|||||||||||||||||| | ||||||||||| ||||||| |||||||| || | |||||
Sbjct: 300 atacatggtggttctcagag-tagaggttgacggaagttattatcgatacttcttctggt 358
Query: 492 aagaaataaggattgttgcagtatgatcttacagtgtgttcatttacttttctgactatg 551
||||||||||||| ||||||||||||||| ||||| | |||| |||||||||||||||||
Sbjct: 359 aagaaataaggatggttgcagtatgatctcacagtatcttca-ttacttttctgactatg 417
Query: 552 ttatgtgctttaatcgaatgaatgaat 578
||||| |||||||| |||||||||||
Sbjct: 418 ttatgcactttaatcaaatgaatgaat 444
>gb|CF487355.1|CF487355 POL1_43_G02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_43_G02_A002 3', mRNA sequence
Length = 602
Score = 355 bits (179), Expect = 3e-096
Identities = 233/251 (92%)
Strand = Plus / Plus
Query: 157 ctggaaggatcacgtggtcattgacaagaagtacttccggcctgcagaagtcgacagcct 216
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 2 ctggaaggatcatgtggtcattgacaagaagtacttccggccagcagaggtcgacagcct 61
Query: 217 caagggggacgccaccaaggcgaggaaggtgctcaagtggaagcccaaggttgggttcca 276
|||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 62 caagggggactccaccaaggccaggaaggtgctcaaatggaagcccaaggttgggttcca 121
Query: 277 ggagctcgtggagatgatggtcgatcacgacattgagctcgccaagaaggagaaggttct 336
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 122 gcagctcgtggagatgatggttgatcacgacattgagctcgccaagaaggagaaggtcct 181
Query: 337 ggtggatgctgggttccgtgatcccaagcagcagccatagaaacatcacagttgcttctt 396
|||||||||||| | |||||| |||||||||||||||||| |||| ||| |||| |||
Sbjct: 182 ggtggatgctggataccgtgaccccaagcagcagccataggaacagtgcagatgctcctt 241
Query: 397 gctctgttggg 407
|||||||||||
Sbjct: 242 gctctgttggg 252
Score = 184 bits (93), Expect = 6e-045
Identities = 165/186 (88%), Gaps = 6/186 (3%)
Strand = Plus / Plus
Query: 432 atacatggtggttctcaggggtagaggttgaccgaagttactatcgatatttatcctggt 491
|||||||||||||||||| | ||||||||||| ||||||| |||||||| || | |||||
Sbjct: 292 atacatggtggttctcagag-tagaggttgacggaagttattatcgatacttcttctggt 350
Query: 492 aagaaataaggattgttgcagtatgatcttacagtgtgttcatttacttttctgactatg 551
||||||||||||| ||||||||||||||| ||||| | |||| |||||||||||||||||
Sbjct: 351 aagaaataaggatggttgcagtatgatctcacagtatcttca-ttacttttctgactatg 409
Query: 552 ttatgtgctttaatc----gaatgaatgaataatccatgccaatttggtatttggaagag 607
||||| |||||||| |||| |||||||||| ||||||||||| |||||||||||||
Sbjct: 410 ttatgcactttaatcaaatgaataaatgaataattcatgccaattttgtatttggaagag 469
Query: 608 gatgat 613
||||||
Sbjct: 470 gatgat 475
>gb|CW291832.1|CW291832 104_771_11413761_116_35763_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11413761, DNA
sequence
Length = 620
Score = 347 bits (175), Expect = 8e-094
Identities = 205/215 (95%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 404 gggactggggtttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggatc 463
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcctgcagg 131
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 464 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttcttgcagg 523
Query: 132 ctgccttcggctacgccggcctcagctggaaggatcacgtggtcattgacaagaagtact 191
||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct: 524 ctgccttcggctacgccgggctcaactggaaggatcatgtggtcattgacaagaagtact 583
Query: 192 tccggcctgcagaagtcgacagcctcaagggggac 226
||||||| ||||| |||||||||||||||||||||
Sbjct: 584 tccggccagcagaggtcgacagcctcaagggggac 618
>gb|CF482496.1|CF482496 POL1_7_G06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_7_G06_A002 3', mRNA sequence
Length = 596
Score = 347 bits (175), Expect = 8e-094
Identities = 232/251 (92%)
Strand = Plus / Plus
Query: 157 ctggaaggatcacgtggtcattgacaagaagtacttccggcctgcagaagtcgacagcct 216
|||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 148 ctggaaggatcatgtggtcattgacaagaagtacttccggccaccagaggtcgacagcct 207
Query: 217 caagggggacgccaccaaggcgaggaaggtgctcaagtggaagcccaaggttgggttcca 276
|||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 208 caagggggactccaccaaggccaggaaggtgctcaaatggaagcccaaggttgggttcca 267
Query: 277 ggagctcgtggagatgatggtcgatcacgacattgagctcgccaagaaggagaaggttct 336
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 268 gcagctcgtggagatgatggttgatcacgacattgagctcgccaagaaggagaaggtcct 327
Query: 337 ggtggatgctgggttccgtgatcccaagcagcagccatagaaacatcacagttgcttctt 396
|||||||||||| | |||||| |||||||||||||||||| |||| ||| |||| |||
Sbjct: 328 ggtggatgctggataccgtgaccccaagcagcagccataggaacagtgcagatgctcctt 387
Query: 397 gctctgttggg 407
|||||||||||
Sbjct: 388 gctctgttggg 398
Score = 157 bits (79), Expect = 1e-036
Identities = 132/147 (89%), Gaps = 2/147 (1%)
Strand = Plus / Plus
Query: 432 atacatggtggttctcaggggtagaggttgaccgaagttactatcgatatttatcctggt 491
|||||||||||||||||| | ||||||||||| ||||||| |||||||| || | |||||
Sbjct: 438 atacatggtggttctcagag-tagaggttgacggaagttattatcgatacttcttctggt 496
Query: 492 aagaaataaggattgttgcagtatgatcttacagtgtgttcatttacttttctgactatg 551
||||||||||||| ||||||||||||||| ||||| | |||| |||||||||||||||||
Sbjct: 497 aagaaataaggatggttgcagtatgatctcacagtatcttca-ttacttttctgactatg 555
Query: 552 ttatgtgctttaatcgaatgaatgaat 578
||||| |||||||| |||||||||||
Sbjct: 556 ttatgcactttaatcaaatgaatgaat 582
>gb|CN133090.1|CN133090 OX1_10_C09.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_10_C09_A002 3', mRNA sequence
Length = 675
Score = 331 bits (167), Expect = 4e-089
Identities = 218/235 (92%)
Strand = Plus / Plus
Query: 173 gtcattgacaagaagtacttccggcctgcagaagtcgacagcctcaagggggacgccacc 232
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct: 231 gtcattgacaagaagtacttccggccagcagaggtcgacagcctcaagggggactccacc 290
Query: 233 aaggcgaggaaggtgctcaagtggaagcccaaggttgggttccaggagctcgtggagatg 292
||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 291 aaggccaggaaggtgctcaaatggaagcccaaggttgggttccagcagctcgtggagatg 350
Query: 293 atggtcgatcacgacattgagctcgccaagaaggagaaggttctggtggatgctgggttc 352
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct: 351 atggttgatcacgacattgagctcgccaagaaggagaaggtcctggtggatgctggatac 410
Query: 353 cgtgatcccaagcagcagccatagaaacatcacagttgcttcttgctctgttggg 407
||||| |||||||||||||||||| |||| ||| |||| ||||||||||||||
Sbjct: 411 cgtgaccccaagcagcagccataggaacagtgcagatgctccttgctctgttggg 465
Score = 165 bits (83), Expect = 6e-039
Identities = 152/172 (88%), Gaps = 6/172 (3%)
Strand = Plus / Plus
Query: 432 atacatggtggttctcaggggtagaggttgaccgaagttactatcgatatttatcctggt 491
|||||||||||||||||| | ||||||||||| ||||||| |||||||| || | |||||
Sbjct: 505 atacatggtggttctcagag-tagaggttgacggaagttattatcgatacttcttctggt 563
Query: 492 aagaaataaggattgttgcagtatgatcttacagtgtgttcatttacttttctgactatg 551
||||||||||||| ||||||||||||||| ||||| | |||| |||||||||||||||||
Sbjct: 564 aagaaataaggatggttgcagtatgatctcacagtatcttca-ttacttttctgactatg 622
Query: 552 ttatgtgctttaatc----gaatgaatgaataatccatgccaatttggtatt 599
||||| |||||||| ||||||||||||||| ||||||||||| |||||
Sbjct: 623 ttatgcactttaatcaaatgaatgaatgaataattcatgccaattttgtatt 674
Score = 155 bits (78), Expect = 6e-036
Identities = 90/94 (95%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 140 gggactggggtttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggatc 199
Query: 72 agccgggggattacgtcgtcgccactgaggagtc 105
|||||| ||||||||||||||||||||||||||
Sbjct: 200 agccggccgattacgtcgtcgccactgaggagtc 233
>gb|CW048313.1|CW048313 104_286_10513288_114_30214 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513288, DNA
sequence
Length = 213
Score = 315 bits (159), Expect = 3e-084
Identities = 198/211 (93%)
Strand = Plus / Minus
Query: 42 aggcaatgtggctcatgctgcagcaggaacagccgggggattacgtcgtcgccactgagg 101
|||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||
Sbjct: 213 aggcaatgtggctcatgctgcagcaggatcagccggccgattatgtcgtcgccactgagg 154
Query: 102 agtcccacaccgtcgaggagttcctgcaggctgccttcggctacgccggcctcagctgga 161
||||||||||||||||||||||| |||||||||||||||| |||||||| |||| |||||
Sbjct: 153 agtcccacaccgtcgaggagttcttgcaggctgccttcggttacgccgggctcaactgga 94
Query: 162 aggatcacgtggtcattgacaagaagtacttccggcctgcagaagtcgacagcctcaagg 221
||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 93 aggatcatgtggtcattgacaagaagtacttccggccagcagaggtcgacagcctcaagg 34
Query: 222 gggacgccaccaaggcgaggaaggtgctcaa 252
||||| |||||||||| ||||||||||||||
Sbjct: 33 gggactccaccaaggccaggaaggtgctcaa 3
>gb|CF433777.1|CF433777 NIT1_30_G05.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_30_G05_A002 3', mRNA sequence
Length = 528
Score = 232 bits (117), Expect = 3e-059
Identities = 156/169 (92%)
Strand = Plus / Plus
Query: 239 aggaaggtgctcaagtggaagcccaaggttgggttccaggagctcgtggagatgatggtc 298
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 aggaaggtgctcaaatggaagcccaaggttgggttccagcagctcgtggagatgatggtt 60
Query: 299 gatcacgacattgagctcgccaagaaggagaaggttctggtggatgctgggttccgtgat 358
||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||
Sbjct: 61 gatcacgacattgagctcgccaagaaggagaaggtcctggtggatgctggataccgtgac 120
Query: 359 cccaagcagcagccatagaaacatcacagttgcttcttgctctgttggg 407
|||||||||||||||||| |||| ||| |||| ||||||||||||||
Sbjct: 121 cccaagcagcagccataggaacagtgcagatgctccttgctctgttggg 169
Score = 192 bits (97), Expect = 3e-047
Identities = 166/186 (89%), Gaps = 6/186 (3%)
Strand = Plus / Plus
Query: 432 atacatggtggttctcaggggtagaggttgaccgaagttactatcgatatttatcctggt 491
|||||||||||||||||| | ||||||||||| ||||||| |||||||| || | |||||
Sbjct: 209 atacatggtggttctcagag-tagaggttgacggaagttattatcgatacttcttctggt 267
Query: 492 aagaaataaggattgttgcagtatgatcttacagtgtgttcatttacttttctgactatg 551
||||||||||||| ||||||||||||||| ||||| | |||| |||||||||||||||||
Sbjct: 268 aagaaataaggatggttgcagtatgatctcacagtatcttca-ttacttttctgactatg 326
Query: 552 ttatgtgctttaatc----gaatgaatgaataatccatgccaatttggtatttggaagag 607
||||| |||||||| ||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 327 ttatgcactttaatcaaatgaatgaatgaataattcatgccaattttgtatttggaagag 386
Query: 608 gatgat 613
||||||
Sbjct: 387 gatgat 392
>gb|CW213854.1|CW213854 104_645_11191785_116_37034_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11191785, DNA
sequence
Length = 644
Score = 216 bits (109), Expect = 2e-054
Identities = 149/161 (92%), Gaps = 1/161 (0%)
Strand = Plus / Plus
Query: 454 agaggttgaccgaagttactatcgatat-ttatcctggtaagaaataaggattgttgcag 512
|||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 79 agaggttgaccggagttactatcgataacttctcctggtaagaaataaggatgattgcag 138
Query: 513 tatgatcttacagtgtgttcatttacttttctgactatgttatgtgctttaatcgaatga 572
|||||| | | ||| | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 139 tatgatgtcatagtatcttcatttacttttctgactatgttatgtgctttaatcaaatga 198
Query: 573 atgaataatccatgccaatttggtatttggaagaggatgat 613
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 atgaataatccatgccaatttggtatttggaagaggatgat 239
>gb|CW224331.1|CW224331 104_660_11203389_148_37198_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11203389, DNA
sequence
Length = 611
Score = 184 bits (93), Expect = 6e-045
Identities = 108/113 (95%)
Strand = Plus / Minus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 115 gggactgggggttcgccggagactacgtcgaggcaatgtggctcatgctgcagcaggatc 56
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttc 124
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttc 3
>gb|CN134283.1|CN134283 OX1_25_A03.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_25_A03_A002 5', mRNA sequence
Length = 759
Score = 184 bits (93), Expect = 6e-045
Identities = 108/113 (95%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgcagcaggaac 71
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 644 gggactgggggttcgccggagactacgtcgaggcaatgtggctcatgctgcagcaggatc 703
Query: 72 agccgggggattacgtcgtcgccactgaggagtcccacaccgtcgaggagttc 124
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 agccggccgattacgtcgtcgccactgaggagtcccacaccgtcgaggagttc 756
>gb|CF485855.1|CF485855 POL1_34_C10.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_34_C10_A002 3', mRNA sequence
Length = 693
Score = 149 bits (75), Expect = 4e-034
Identities = 131/147 (89%), Gaps = 2/147 (1%)
Strand = Plus / Plus
Query: 432 atacatggtggttctcaggggtagaggttgaccgaagttactatcgatatttatcctggt 491
|||||||||||||||||| | ||||||||||| |||||| |||||||| || | |||||
Sbjct: 519 atacatggtggttctcagag-tagaggttgacggaagttgttatcgatacttcttctggt 577
Query: 492 aagaaataaggattgttgcagtatgatcttacagtgtgttcatttacttttctgactatg 551
||||||||||||| ||||||||||||||| ||||| | |||| |||||||||||||||||
Sbjct: 578 aagaaataaggatggttgcagtatgatctcacagtatcttca-ttacttttctgactatg 636
Query: 552 ttatgtgctttaatcgaatgaatgaat 578
||||| |||||||| |||||||||||
Sbjct: 637 ttatgcactttaatcaaatgaatgaat 663
Score = 56.0 bits (28), Expect = 4e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 352 ccgtgatcccaagcagcagccatagaaacatcacagttgcttcttgctctgttggg 407
|||||| |||||||||||||||||| |||| ||| |||| ||||||||||||||
Sbjct: 424 ccgtgaccccaagcagcagccataggaacagtgcagatgctccttgctctgttggg 479
>gb|CF482578.1|CF482578 POL1_7_G06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_7_G06_A002 5', mRNA sequence
Length = 743
Score = 117 bits (59), Expect = 1e-024
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 157 ctggaaggatcacgtggtcattgacaagaagtacttccggcctgcagaagtcgacagcct 216
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 669 ctggaaggatcatgtggtcattgacaagaagtacttccggccagcagaggtcgacagcct 728
Query: 217 caagggggacgccac 231
|||||||||| ||||
Sbjct: 729 caagggggactccac 743
>gb|AW746834.1|AW746834 WS1_55_E03.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 148
Score = 115 bits (58), Expect = 5e-024
Identities = 114/131 (87%), Gaps = 5/131 (3%)
Strand = Plus / Plus
Query: 467 agttactatcgatatttatcctggtaagaaataaggattgttgcagtatgatcttacagt 526
||||| |||||||| || | |||||||||||||||||| ||||||||||||||| ||||
Sbjct: 16 agttattatcgatacttcttctggtaagaaataaggatggttgcagtatgatctcccagt 75
Query: 527 gtgttcatttacttttctgactatgttatgtgctttaatc----gaatgaatgaataatc 582
| |||| |||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 76 atcttca-ttacttttctgactatgttatgccctttaatcaaatgaatgaatgaataatt 134
Query: 583 catgccaattt 593
|||||||||||
Sbjct: 135 catgccaattt 145
>gb|CN135580.1|CN135580 OX1_37_E12.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_37_E12_A002 5', mRNA sequence
Length = 784
Score = 95.6 bits (48), Expect = 5e-018
Identities = 51/52 (98%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgtcgaggcaatgtggctcatgctgca 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gggactggggtttcgcgggggactacgtcgaggcaatgtggctcatgctgca 784
>gb|CD428824.1|CD428824 ETH1_36_D08.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_36_D08_A002 5', mRNA sequence
Length = 606
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 gggactgggggttcgcgggggactacgt 39
|||||||||| |||||||||||||||||
Sbjct: 579 gggactggggtttcgcgggggactacgt 606
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 174,024
Number of Sequences: 832831
Number of extensions: 174024
Number of successful extensions: 52950
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52824
Number of HSP's gapped (non-prelim): 78
length of query: 623
length of database: 491,359,669
effective HSP length: 19
effective length of query: 604
effective length of database: 475,535,880
effective search space: 287223671520
effective search space used: 287223671520
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)