BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619423.2.1
(886 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN133080.1|CN133080 OX1_10_B10.b1_A002 Oxidatively-stres... 882 0.0
gb|CD228356.1|CD228356 CCC1_7_A01.b1_A007 Callus culture/ce... 686 0.0
gb|CX617349.1|CX617349 GABR1_33_E12.b1_A002 GA- or brassino... 670 0.0
gb|CX610190.1|CX610190 ANR1_17_E01.b1_A002 Anaerobic roots ... 668 0.0
gb|CX619836.1|CX619836 GABR1_48_D10.b1_A002 GA- or brassino... 664 0.0
gb|CD231568.1|CD231568 SS1_22_H03.b1_A012 Salt-stressed see... 509 e-142
gb|CD220761.1|CD220761 CCC1_69_C10.b1_A007 Callus culture/c... 361 7e-098
gb|CN130722.1|CN130722 RHOH1_43_H02.b1_A002 Acid- and alkal... 351 7e-095
gb|BG357389.1|BG357389 OV2_29_C07.g1_A002 Ovary 2 (OV2) Sor... 198 6e-049
gb|BG103087.1|BG103087 RHIZ2_18_A04.g1_A003 Rhizome2 (RHIZ2... 190 2e-046
gb|CD224939.1|CD224939 CCC1_37_A04.b1_A007 Callus culture/c... 190 2e-046
gb|CN130798.1|CN130798 RHOH1_43_H02.g1_A002 Acid- and alkal... 190 2e-046
gb|BG558694.1|BG558694 RHIZ2_59_C03.g1_A003 Rhizome2 (RHIZ2... 188 6e-046
gb|AW285351.1|AW285351 LG1_244_C06.g1_A002 Light Grown 1 (L... 172 4e-041
gb|BE355906.1|BE355906 DG1_11_D11.g1_A002 Dark Grown 1 (DG1... 172 4e-041
gb|BG051515.1|BG051515 FM1_57_E01.g1_A003 Floral-Induced Me... 165 9e-039
gb|BG102542.1|BG102542 RHIZ2_34_D03.g1_A003 Rhizome2 (RHIZ2... 165 9e-039
gb|CD222779.1|CD222779 CCC1_24_G08.b1_A007 Callus culture/c... 137 2e-030
gb|BE355598.1|BE355598 DG1_115_H07.g1_A002 Dark Grown 1 (DG... 133 3e-029
gb|CF761981.1|CF761981 DSAF1_86_D08.b1_A011 Drought-stresse... 88 2e-015
gb|CW350519.1|CW350519 fsbb001f011o02f0 Sorghum methylation... 70 4e-010
>gb|CN133080.1|CN133080 OX1_10_B10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_10_B10_A002 3', mRNA sequence
Length = 679
Score = 882 bits (445), Expect = 0.0
Identities = 532/561 (94%)
Strand = Plus / Plus
Query: 1 tgcaccccggttcagcacatatgcagtgctagcggcacatgtctggaaatgtgtctccct 60
||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct: 28 tgcaccccggttcagcacatacgcagttctagcagcacatgtctggaaatgtgtctccct 87
Query: 61 tgcacgcagcctacctcctgaacaacccaccaagttgtattgcgccactgatggccgtca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 88 tgcacgcagcctacctcctgaacaacccaccaagttgtattgcgccactgatgggcgcca 147
Query: 121 aacgctacagcctccactaccagatgggtactttggcaatgtcatcttcaccgcgacacc 180
| |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct: 148 acggctacagcctccactaccagatggttactttggtaatgtcatcttcactgcgacacc 207
Query: 181 acttgctgaggcgggcaaggtgaccagtgagctggcagaaggagcagcagtcatccaggg 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 208 acttgctgaggcgggcaaggtgaccagtgggctggcagaaggagcagcagtcatccaggg 267
Query: 241 agcactggataggatggacaacgactactgccgctcagcgttagactacctggagcttca 300
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct: 268 agcactggataggatggacaacgactactgccgctcagcgctggactacctggagctgca 327
Query: 301 accggatctgtcagcacttgtgcgtggagcgcataccttccgctgcccgaacctagggct 360
||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 328 accggatttgtcagcactggtgcgtggagcacataccttccggtgcccgaacctagggct 387
Query: 361 caccagctgggtgcgccttcctatccatgatgctgacttcggatggggccggcctgtgtt 420
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 388 caccagctgggtacgccttcctatccatgatgccgacttcggatggggccgtcctgtgtt 447
Query: 421 catggggccaggtggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatgg 480
|||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 448 catggggccaggcggtattgcatatgaaggtctggcgtttgtcctcccaagtgcaaatgg 507
Query: 481 cgacggcagcctgtccattgctatctcgttgcaggctgagcacatggagaagttccggaa 540
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 508 agatggcagcctgtccattgctatctctttgcaggctgagcacatggagaagttccggaa 567
Query: 541 gctaatcggcgaagcttaaac 561
||||||| |||||| ||||||
Sbjct: 568 gctaatctgcgaagtttaaac 588
>gb|CD228356.1|CD228356 CCC1_7_A01.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_7_A01_A007 3', mRNA sequence
Length = 532
Score = 686 bits (346), Expect = 0.0
Identities = 412/434 (94%)
Strand = Plus / Plus
Query: 128 cagcctccactaccagatgggtactttggcaatgtcatcttcaccgcgacaccacttgct 187
|||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct: 1 cagcctccactaccagatggttactttggtaatgtcatcttcactgcgacaccacttgct 60
Query: 188 gaggcgggcaaggtgaccagtgagctggcagaaggagcagcagtcatccagggagcactg 247
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaggcgggcaaggtgaccagtgggctggcagaaggagcagcagtcatccagggagcactg 120
Query: 248 gataggatggacaacgactactgccgctcagcgttagactacctggagcttcaaccggat 307
||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct: 121 gataggatggacaacgactactgccgctcagcgctggactacctggagctgcaaccggat 180
Query: 308 ctgtcagcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagc 367
|||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 181 ttgtcagcactggtgcgtggagcacataccttccggtgcccgaacctagggctcaccagc 240
Query: 368 tgggtgcgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatgggg 427
||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 241 tgggtacgccttcctatccatgatgccgacttcggatggggccgtcctgtgttcatgggg 300
Query: 428 ccaggtggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggc 487
||||| || ||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 301 ccaggcggtattgcatatgaaggtctggcgtttgtcctcccaagtgcaaatggagatggc 360
Query: 488 agcctgtccattgctatctcgttgcaggctgagcacatggagaagttccggaagctaatc 547
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agcctgtccattgctatctctttgcaggctgagcacatggagaagttccggaagctaatc 420
Query: 548 ggcgaagcttaaac 561
|||||| ||||||
Sbjct: 421 tgcgaagtttaaac 434
>gb|CX617349.1|CX617349 GABR1_33_E12.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_33_E12_A002 3', mRNA sequence
Length = 790
Score = 670 bits (338), Expect = 0.0
Identities = 404/426 (94%)
Strand = Plus / Plus
Query: 136 actaccagatgggtactttggcaatgtcatcttcaccgcgacaccacttgctgaggcggg 195
|||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 1 actaccagatggttactttggtaatgtcatcttcactgcgacaccacttgctgaggcggg 60
Query: 196 caaggtgaccagtgagctggcagaaggagcagcagtcatccagggagcactggataggat 255
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caaggtgaccagtgggctggcagaaggagcagcagtcatccagggagcactggataggat 120
Query: 256 ggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgtcagc 315
||||||||||||||||||||||||| | |||||||||||||| ||||||||| |||||||
Sbjct: 121 ggacaacgactactgccgctcagcgctggactacctggagctgcaaccggatttgtcagc 180
Query: 316 acttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctgggtgcg 375
||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 181 actggtgcgtggagcacataccttccggtgcccgaacctagggctcaccagctgggtacg 240
Query: 376 ccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccaggtgg 435
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 241 ccttcctatccatgatgccgacttcggatggggccgtcctgtgttcatggggccaggcgg 300
Query: 436 cattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctgtc 495
||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 301 tattgcatatgaaggtctggcgtttgtcctcccaagtgcaaatggagatggcagcctgtc 360
Query: 496 cattgctatctcgttgcaggctgagcacatggagaagttccggaagctaatcggcgaagc 555
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 361 cattgctatctctttgcaggctgagcacatggagaagttccggaagctaatctgcgaagt 420
Query: 556 ttaaac 561
||||||
Sbjct: 421 ttaaac 426
Score = 137 bits (69), Expect = 2e-030
Identities = 97/104 (93%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 613 cccaaattctc--agataaaatactgaagtttcaagtgaacccagtggctgcactttcac 670
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cccaaattctcccagataaaatactgaagtttcaagtgaacccagtggctgcactttcac 545
Query: 671 -tttgaagacttgcagaggaaattcatggtcacttcattttgtg 713
||||||||||||||||| |||||||||| ||||| |||||||
Sbjct: 546 ttttgaagacttgcagagtaaattcatggccacttacttttgtg 589
Score = 69.9 bits (35), Expect = 4e-010
Identities = 72/82 (87%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 714 agattaattatagagaaagggtagaaattatatg--aagaaacatagtaaaaaatcattg 771
|||| |||||||||||||||||||| ||| | || |||||||||||||||| ||||||
Sbjct: 659 agatcaattatagagaaagggtagacattttctgtgaagaaacatagtaaaac-tcattg 717
Query: 772 ttaggaacaaactccaatagca 793
| |||||||| |||||||||||
Sbjct: 718 taaggaacaagctccaatagca 739
>gb|CX610190.1|CX610190 ANR1_17_E01.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_17_E01_A002 3', mRNA sequence
Length = 726
Score = 668 bits (337), Expect = 0.0
Identities = 488/537 (90%), Gaps = 11/537 (2%)
Strand = Plus / Plus
Query: 188 gaggcgggcaaggtgaccagtgagctggcagaaggagcagcagtcatccagggagcactg 247
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaggcgggcaaggtgaccagtgggctggcagaaggagcagcagtcatccagggagcactg 60
Query: 248 gataggatggacaacgactactgccgctcagcgttagactacctggagcttcaaccggat 307
||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct: 61 gataggatggacaacgactactgccgctcagcgctggactacctggagctgcaaccggat 120
Query: 308 ctgtcagcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagc 367
|||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 121 ttgtcagcactggtgcgtggagcacataccttccggtgcccgaacctagggctcaccagc 180
Query: 368 tgggtgcgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatgggg 427
||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 181 tgggtacgccttcctatccatgatgccgacttcggatggggccgtcctgtgttcatgggg 240
Query: 428 ccaggtggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggc 487
||||| || ||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 241 ccaggcggtattgcatatgaaggtctggcgtttgtcctcccaagtgcaaatggagatggc 300
Query: 488 agcctgtccattgctatctcgttgcaggctgagcacatggagaagttccggaagctaatc 547
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agcctgtccattgctatctctttgcaggctgagcacatggagaagttccggaagctaatt 360
Query: 548 ggcgaagcttaaa--------cggtgccaactgttgaaggaggatgttattgggcgagaa 599
|||||| ||||| | | ||| ||| |||||||| | |||||| |||| |||
Sbjct: 361 tgcgaagtttaaacagaatgtcagcgccgactattgaaggatggtgttatagggcaagag 420
Query: 600 ggattatgctctgcccaaattctc--agataaaatactgaagtttcaagtgaacccagtg 657
| ||||| | | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 421 gctttatgttgtacccaaattctcccagataaaatactgaagtttcaagtgaacccagtg 480
Query: 658 gctgcactttcac-tttgaagacttgcagaggaaattcatggtcacttcattttgtg 713
||||||||||||| ||||||||||||||||| |||||||||| ||||| |||||||
Sbjct: 481 gctgcactttcacttttgaagacttgcagagtaaattcatggccacttacttttgtg 537
Score = 69.9 bits (35), Expect = 4e-010
Identities = 72/82 (87%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 714 agattaattatagagaaagggtagaaattatatg--aagaaacatagtaaaaaatcattg 771
|||| |||||||||||||||||||| ||| | || |||||||||||||||| ||||||
Sbjct: 607 agatcaattatagagaaagggtagacattttctgtgaagaaacatagtaaaac-tcattg 665
Query: 772 ttaggaacaaactccaatagca 793
| |||||||| |||||||||||
Sbjct: 666 taaggaacaagctccaatagca 687
>gb|CX619836.1|CX619836 GABR1_48_D10.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_48_D10_A002 3', mRNA sequence
Length = 736
Score = 664 bits (335), Expect = 0.0
Identities = 486/535 (90%), Gaps = 11/535 (2%)
Strand = Plus / Plus
Query: 190 ggcgggcaaggtgaccagtgagctggcagaaggagcagcagtcatccagggagcactgga 249
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcgggcaaggtgaccagtgggctggcagaaggagcagcagtcatccagggagcactgga 60
Query: 250 taggatggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatct 309
||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct: 61 taggatggacaacgactactgccgctcagcgctggactacctggagctgcaaccggattc 120
Query: 310 gtcagcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctg 369
||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 121 gtcagcactggtgcgtggagcacataccttccggtgcccgaacctagggctcaccagctg 180
Query: 370 ggtgcgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggcc 429
||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 181 ggtacgccttcctatccatgatgccgacttcggatggggccgtcctgtgttcatggggcc 240
Query: 430 aggtggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcag 489
||| || ||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 241 aggcggtattgcatatgaaggtctggcgtttgtcctcccaagtgcaaatggagatggcag 300
Query: 490 cctgtccattgctatctcgttgcaggctgagcacatggagaagttccggaagctaatcgg 549
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 301 cctgtccattgctatctctttgcaggctgagcacatggagaagttccggaagctaatctg 360
Query: 550 cgaagcttaaa--------cggtgccaactgttgaaggaggatgttattgggcgagaagg 601
||||| ||||| | | ||| ||| |||||||| | |||||| |||| ||| |
Sbjct: 361 cgaagtttaaacagaatgtcagcgccgactattgaaggatggtgttatagggcaagaggc 420
Query: 602 attatgctctgcccaaattctc--agataaaatactgaagtttcaagtgaacccagtggc 659
||||| | | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 421 tttatgttgtacccaaattctcccagataaaatactgaagtttcaagtgaacccagtggc 480
Query: 660 tgcactttcac-tttgaagacttgcagaggaaattcatggtcacttcattttgtg 713
||||||||||| ||||||||||||||||| |||||||||| ||||| |||||||
Sbjct: 481 tgcactttcacttttgaagacttgcagagtaaattcatggccacttacttttgtg 535
Score = 69.9 bits (35), Expect = 4e-010
Identities = 72/82 (87%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 714 agattaattatagagaaagggtagaaattatatg--aagaaacatagtaaaaaatcattg 771
|||| |||||||||||||||||||| ||| | || |||||||||||||||| ||||||
Sbjct: 605 agatcaattatagagaaagggtagacattttctgtgaagaaacatagtaaaac-tcattg 663
Query: 772 ttaggaacaaactccaatagca 793
| |||||||| |||||||||||
Sbjct: 664 taaggaacaagctccaatagca 685
>gb|CD231568.1|CD231568 SS1_22_H03.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_22_H03_A012 3', mRNA sequence
Length = 634
Score = 509 bits (257), Expect = e-142
Identities = 396/441 (89%), Gaps = 11/441 (2%)
Strand = Plus / Plus
Query: 284 gactacctggagcttcaaccggatctgtcagcacttgtgcgtggagcgcataccttccgc 343
|||||||||||||| ||||||||| |||||||||| ||||||||||| |||||||||||
Sbjct: 2 gactacctggagctgcaaccggatttgtcagcactggtgcgtggagcacataccttccgg 61
Query: 344 tgcccgaacctagggctcaccagctgggtgcgccttcctatccatgatgctgacttcgga 403
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 62 tgcccgaacctagggctcaccagctgggtacgccttcctatccatgatgccgacttcgga 121
Query: 404 tggggccggcctgtgttcatggggccaggtggcattgcgtatgaaggtctggcgtttgtc 463
|||||||| |||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct: 122 tggggccgtcctgtgttcatggggccaggcggtattgcatatgaaggtctggcgtttgtc 181
Query: 464 ctcccaagtgcaaatggcgacggcagcctgtccattgctatctcgttgcaggctgagcac 523
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct: 182 ctcccaagtgcaaatggagatggcagcctgtccattgctatctctttgcaggctgagcac 241
Query: 524 atggagaagttccggaagctaatcggcgaagcttaaa--------cggtgccaactgttg 575
|||||||||||||||||||||||| |||||| ||||| | | ||| ||| |||
Sbjct: 242 atggagaagttccggaagctaatctgcgaagtttaaacagaatgtcagcgccgactattg 301
Query: 576 aaggaggatgttattgggcgagaaggattatgctctgcccaaattctc--agataaaata 633
||||| | |||||| |||| ||| | ||||| | | ||||||||||| ||||||||||
Sbjct: 302 aaggatggtgttatagggcaagaggctttatgttgtacccaaattctcccagataaaata 361
Query: 634 ctgaagtttcaagtgaacccagtggctgcactttcac-tttgaagacttgcagaggaaat 692
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 362 ctgaagtttcaagtgaacccagtggctgcactttcacttttgaagacttgcagagtaaat 421
Query: 693 tcatggtcacttcattttgtg 713
|||||| ||||| |||||||
Sbjct: 422 tcatggccacttacttttgtg 442
Score = 69.9 bits (35), Expect = 4e-010
Identities = 72/82 (87%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 714 agattaattatagagaaagggtagaaattatatg--aagaaacatagtaaaaaatcattg 771
|||| |||||||||||||||||||| ||| | || |||||||||||||||| ||||||
Sbjct: 512 agatcaattatagagaaagggtagacattttctgtgaagaaacatagtaaaac-tcattg 570
Query: 772 ttaggaacaaactccaatagca 793
| |||||||| |||||||||||
Sbjct: 571 taaggaacaagctccaatagca 592
>gb|CD220761.1|CD220761 CCC1_69_C10.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_69_C10_A007 3', mRNA sequence
Length = 538
Score = 361 bits (182), Expect = 7e-098
Identities = 303/342 (88%), Gaps = 11/342 (3%)
Strand = Plus / Plus
Query: 383 atccatgatgctgacttcggatggggccggcctgtgttcatggggccaggtggcattgcg 442
||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct: 1 atccatgatgccgacttcggatggggccgtcctgtgttcatggggccaggcggtattgca 60
Query: 443 tatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctgtccattgct 502
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 61 tatgaaggtctggcgtttgtcctcccaagtgcaaatggagatggcagcctgtccattgct 120
Query: 503 atctcgttgcaggctgagcacatggagaagttccggaagctaatcggcgaagcttaaa-- 560
||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 121 atctctttgcaggctgagcacatggagaagttccggaagctaatctgcgaagtttaaaca 180
Query: 561 ------cggtgccaactgttgaaggaggatgttattgggcgagaaggattatgctctgcc 614
| | ||| ||| |||||||| | |||||| |||| ||| | ||||| | | ||
Sbjct: 181 gaatgtcagcgccgactattgaaggatggtgttatagggcaagaggctttatgttgtacc 240
Query: 615 caaattctc--agataaaatactgaagtttcaagtgaacccagtggctgcactttcac-t 671
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 241 caaattctcccagataaaatactgaagtttcaagtgaacccagtggctgcactttcactt 300
Query: 672 ttgaagacttgcagaggaaattcatggtcacttcattttgtg 713
|||||||||||||||| |||||||||| ||||| |||||||
Sbjct: 301 ttgaagacttgcagagtaaattcatggccacttacttttgtg 342
Score = 69.9 bits (35), Expect = 4e-010
Identities = 72/82 (87%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 714 agattaattatagagaaagggtagaaattatatg--aagaaacatagtaaaaaatcattg 771
|||| |||||||||||||||||||| ||| | || |||||||||||||||| ||||||
Sbjct: 412 agatcaattatagagaaagggtagacattttctgtgaagaaacatagtaaaac-tcattg 470
Query: 772 ttaggaacaaactccaatagca 793
| |||||||| |||||||||||
Sbjct: 471 taaggaacaagctccaatagca 492
>gb|CN130722.1|CN130722 RHOH1_43_H02.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_43_H02_A002 3', mRNA sequence
Length = 737
Score = 351 bits (177), Expect = 7e-095
Identities = 301/341 (88%), Gaps = 11/341 (3%)
Strand = Plus / Plus
Query: 384 tccatgatgctgacttcggatggggccggcctgtgttcatggggccaggtggcattgcgt 443
|||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||| |
Sbjct: 201 tccatgatgccgacttcggatggggccgtcctgtgttcatggggccaggcggtattgcat 260
Query: 444 atgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctgtccattgcta 503
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 261 atgaaggtctggcgtttgtcctcccaagtgcaaatggagatggcagcctgtccattgcta 320
Query: 504 tctcgttgcaggctgagcacatggagaagttccggaagctaatcggcgaagcttaaa--- 560
|||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 321 tctctttgcaggctgagcacatggagaagttccggaagctaatctgcgaagtttaaacag 380
Query: 561 -----cggtgccaactgttgaaggaggatgttattgggcgagaaggattatgctctgccc 615
| | ||| ||| |||||||| | |||||| |||| ||| | ||||| | | |||
Sbjct: 381 aatgtcagcgccgactattgaaggatggtgttatagggcaagaggctttatgttgtaccc 440
Query: 616 aaattctc--agataaaatactgaagtttcaagtgaacccagtggctgcactttcac-tt 672
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 441 aaattctcccagataaaatactgaagtttcaagtgaacccagtggctgcattttcacttt 500
Query: 673 tgaagacttgcagaggaaattcatggtcacttcattttgtg 713
||||||||||||||| |||||||||| ||||| |||||||
Sbjct: 501 tgaagacttgcagagtaaattcatggccacttacttttgtg 541
Score = 65.9 bits (33), Expect = 6e-009
Identities = 67/76 (88%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 720 attatagagaaagggtagaaattatatg--aagaaacatagtaaaaaatcattgttagga 777
||||||||||||||||||| ||| | || |||||||||||||||| ||||||| ||||
Sbjct: 617 attatagagaaagggtagacattttctgtgaagaaacatagtaaaac-tcattgtaagga 675
Query: 778 acaaactccaatagca 793
|||| |||||||||||
Sbjct: 676 acaagctccaatagca 691
>gb|BG357389.1|BG357389 OV2_29_C07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 682
Score = 198 bits (100), Expect = 6e-049
Identities = 244/292 (83%)
Strand = Plus / Plus
Query: 252 ggatggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgt 311
|||||||| ||| |||||||| || ||| | |||||||||||||| || ||||| ||||
Sbjct: 89 ggatggacgacgggtactgccggtcggcgctggactacctggagctgcagccggacctgt 148
Query: 312 cagcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctggg 371
| || || || || || ||||| || ||||| ||||| ||||| ||||||||||||||||
Sbjct: 149 cggcgctggtccgcggggcgcacacgttccggtgccccaacctggggctcaccagctggg 208
Query: 372 tgcgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccag 431
||||||| || ||||| || || |||||||| ||||||||||| ||||||||||| || |
Sbjct: 209 tgcgcctgcccatccacgacgcggacttcgggtggggccggcccgtgttcatgggccccg 268
Query: 432 gtggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcc 491
| ||||| ||||| || || || ||||| || ||||| || || || ||||||||||||
Sbjct: 269 gcggcatcgcgtacgaggggctcgcgttcgtgctccccagcgccaaccgcgacggcagcc 328
Query: 492 tgtccattgctatctcgttgcaggctgagcacatggagaagttccggaagct 543
||||| | || |||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 329 tgtccgtggccatctcgctgcaggcggagcacatggagaagttccggaagct 380
>gb|BG103087.1|BG103087 RHIZ2_18_A04.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 568
Score = 190 bits (96), Expect = 2e-046
Identities = 243/292 (83%)
Strand = Plus / Plus
Query: 252 ggatggacaacgactactgccgctcagcgttagactacctggagcttcaaccggatctgt 311
|||||||| ||| |||||||| || ||| | |||||||||||||| || ||||| ||||
Sbjct: 1 ggatggacgacgggtactgccggtcggcgctggactacctggagctgcagccggacctgt 60
Query: 312 cagcacttgtgcgtggagcgcataccttccgctgcccgaacctagggctcaccagctggg 371
| || || || || || ||||| || ||||| ||||| ||||| ||||||||||||||||
Sbjct: 61 cggcgctggtccgcggggcgcacacgttccggtgccccaacctggggctcaccagctggg 120
Query: 372 tgcgccttcctatccatgatgctgacttcggatggggccggcctgtgttcatggggccag 431
||||||| || ||||| || || |||||||| |||||||| || ||||||||||| || |
Sbjct: 121 tgcgcctgcccatccacgacgcggacttcgggtggggccgccccgtgttcatgggccccg 180
Query: 432 gtggcattgcgtatgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcc 491
| ||||| ||||| || || || ||||| || ||||| || || || ||||||||||||
Sbjct: 181 gcggcatcgcgtacgaggggctcgcgttcgtgctccccagcgccaaccgcgacggcagcc 240
Query: 492 tgtccattgctatctcgttgcaggctgagcacatggagaagttccggaagct 543
||||| | || |||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 241 tgtccgtggccatctcgctgcaggcggagcacatggagaagttccggaagct 292
>gb|CD224939.1|CD224939 CCC1_37_A04.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_37_A04_A007 3', mRNA sequence
Length = 670
Score = 190 bits (96), Expect = 2e-046
Identities = 219/260 (84%)
Strand = Plus / Plus
Query: 284 gactacctggagcttcaaccggatctgtcagcacttgtgcgtggagcgcataccttccgc 343
|||||||||||||| || ||||| ||||| || || || || || ||||| || |||||
Sbjct: 74 gactacctggagctgcagccggacctgtcggcgctggtccgcggggcgcacacgttccgg 133
Query: 344 tgcccgaacctagggctcaccagctgggtgcgccttcctatccatgatgctgacttcgga 403
||||| ||||| ||||||||||||||||||||||| || ||||| || || ||||||||
Sbjct: 134 tgccccaacctggggctcaccagctgggtgcgcctgcccatccacgacgcggacttcggg 193
Query: 404 tggggccggcctgtgttcatggggccaggtggcattgcgtatgaaggtctggcgtttgtc 463
||||||||||| ||||||||||| || || ||||| ||||| || || || ||||| ||
Sbjct: 194 tggggccggcccgtgttcatgggccccggcggcatcgcgtacgaggggctcgcgttcgtg 253
Query: 464 ctcccaagtgcaaatggcgacggcagcctgtccattgctatctcgttgcaggctgagcac 523
||||| || || || ||||||||||||||||| | || |||||| ||||||| ||||||
Sbjct: 254 ctccccagcgccaaccgcgacggcagcctgtccgtggccatctcgctgcaggcggagcac 313
Query: 524 atggagaagttccggaagct 543
||||||||||||||||||||
Sbjct: 314 atggagaagttccggaagct 333
>gb|CN130798.1|CN130798 RHOH1_43_H02.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_43_H02_A002 5', mRNA sequence
Length = 834
Score = 190 bits (96), Expect = 2e-046
Identities = 117/124 (94%)
Strand = Plus / Plus
Query: 384 tccatgatgctgacttcggatggggccggcctgtgttcatggggccaggtggcattgcgt 443
|||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||| |
Sbjct: 711 tccatgatgccgacttcggatggggccgtcctgtgttcatggggccaggcggtattgcat 770
Query: 444 atgaaggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctgtccattgcta 503
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 771 atgaaggtctggcgtttgtcctcccaagtgcaaatggagatggcagcctgtccattgcta 830
Query: 504 tctc 507
||||
Sbjct: 831 tctc 834
>gb|BG558694.1|BG558694 RHIZ2_59_C03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 425
Score = 188 bits (95), Expect = 6e-046
Identities = 192/223 (86%), Gaps = 11/223 (4%)
Strand = Plus / Plus
Query: 502 tatctcgttgcaggctgagcacatggagaagttccggaagctaatcggcgaagcttaaa- 560
|||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 1 tatctctttgcaggctgagcacatggagaagttccggaagctaatctgcgaagtttaaac 60
Query: 561 -------cggtgccaactgttgaaggaggatgttattgggcgagaaggattatgctctgc 613
| | ||||||| |||||||| | |||||| |||| ||| | ||||| | | |
Sbjct: 61 agaatgtcagcgccaactattgaaggatggtgttatagggcaagaggctttatgttgtac 120
Query: 614 ccaaattctc--agataaaatactgaagtttcaagtgaacccagtggctgcactttcac- 670
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccaaattctcccagataaaatactgaagtttcaagtgaacccagtggctgcactttcact 180
Query: 671 tttgaagacttgcagaggaaattcatggtcacttcattttgtg 713
||||||||||||||||| |||||||||| ||||| |||||||
Sbjct: 181 tttgaagacttgcagagtaaattcatggccacttacttttgtg 223
Score = 69.9 bits (35), Expect = 4e-010
Identities = 72/82 (87%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 714 agattaattatagagaaagggtagaaattatatg--aagaaacatagtaaaaaatcattg 771
|||| |||||||||||||||||||| ||| | || |||||||||||||||| ||||||
Sbjct: 293 agatcaattatagagaaagggtagacattttctgtgaagaaacatagtaaaac-tcattg 351
Query: 772 ttaggaacaaactccaatagca 793
| |||||||| |||||||||||
Sbjct: 352 taaggaacaagctccaatagca 373
>gb|AW285351.1|AW285351 LG1_244_C06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 538
Score = 172 bits (87), Expect = 4e-041
Identities = 183/215 (85%)
Strand = Plus / Plus
Query: 329 gcgcataccttccgctgcccgaacctagggctcaccagctgggtgcgccttcctatccat 388
||||| || ||||| ||||| ||||| ||||||||||||||||||||||| || |||||
Sbjct: 1 gcgcacacgttccggtgccccaacctggggctcaccagctgggtgcgcctgcccatccac 60
Query: 389 gatgctgacttcggatggggccggcctgtgttcatggggccaggtggcattgcgtatgaa 448
|| || |||||||| ||||||||||| ||||||||||| || || ||||| ||||| ||
Sbjct: 61 gacgcggacttcgggtggggccggcccgtgttcatgggccccggcggcatcgcgtacgag 120
Query: 449 ggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctgtccattgctatctcg 508
|| || ||||| || ||||| || || || ||||||||||||||||| | || ||||||
Sbjct: 121 gggctcgcgttcgtgctccccagcgccaaccgcgacggcagcctgtccgtggccatctcg 180
Query: 509 ttgcaggctgagcacatggagaagttccggaagct 543
||||||| ||||||||||||||||||||||||||
Sbjct: 181 ctgcaggcggagcacatggagaagttccggaagct 215
>gb|BE355906.1|BE355906 DG1_11_D11.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 254
Score = 172 bits (87), Expect = 4e-041
Identities = 183/215 (85%)
Strand = Plus / Plus
Query: 329 gcgcataccttccgctgcccgaacctagggctcaccagctgggtgcgccttcctatccat 388
||||| || ||||| ||||| ||||| ||||||||||||||||||||||| || |||||
Sbjct: 36 gcgcacacgttccggtgccccaacctggggctcaccagctgggtgcgcctgcccatccac 95
Query: 389 gatgctgacttcggatggggccggcctgtgttcatggggccaggtggcattgcgtatgaa 448
|| || |||||||| ||||||||||| ||||||||||| || || ||||| ||||| ||
Sbjct: 96 gacgcggacttcgggtggggccggcccgtgttcatgggccccggcggcatcgcgtacgag 155
Query: 449 ggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctgtccattgctatctcg 508
|| || ||||| || ||||| || || || ||||||||||||||||| | || ||||||
Sbjct: 156 gggctcgcgttcgtgctccccagcgccaaccgcgacggcagcctgtccgtggccatctcg 215
Query: 509 ttgcaggctgagcacatggagaagttccggaagct 543
||||||| ||||||||||||||||||||||||||
Sbjct: 216 ctgcaggcggagcacatggagaagttccggaagct 250
>gb|BG051515.1|BG051515 FM1_57_E01.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 504
Score = 165 bits (83), Expect = 9e-039
Identities = 182/215 (84%)
Strand = Plus / Plus
Query: 329 gcgcataccttccgctgcccgaacctagggctcaccagctgggtgcgccttcctatccat 388
||||| || ||||| ||||| ||||| ||||||||||||||||||||||| || |||||
Sbjct: 14 gcgcacacgttccggtgccccaacctggggctcaccagctgggtgcgcctgcccatccac 73
Query: 389 gatgctgacttcggatggggccggcctgtgttcatggggccaggtggcattgcgtatgaa 448
|| || |||||||| |||||||| || ||||||||||| || || ||||| ||||| ||
Sbjct: 74 gacgcggacttcgggtggggccgccccgtgttcatgggccccggcggcatcgcgtacgag 133
Query: 449 ggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctgtccattgctatctcg 508
|| || ||||| || ||||| || || || ||||||||||||||||| | || ||||||
Sbjct: 134 gggctcgcgttcgtgctccccagcgccaaccgcgacggcagcctgtccgtggccatctcg 193
Query: 509 ttgcaggctgagcacatggagaagttccggaagct 543
||||||| ||||||||||||||||||||||||||
Sbjct: 194 ctgcaggcggagcacatggagaagttccggaagct 228
>gb|BG102542.1|BG102542 RHIZ2_34_D03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 493
Score = 165 bits (83), Expect = 9e-039
Identities = 182/215 (84%)
Strand = Plus / Plus
Query: 329 gcgcataccttccgctgcccgaacctagggctcaccagctgggtgcgccttcctatccat 388
||||| || ||||| ||||| ||||| ||||||||||||||||||||||| || |||||
Sbjct: 9 gcgcacacgttccggtgccccaacctggggctcaccagctgggtgcgcctgcccatccac 68
Query: 389 gatgctgacttcggatggggccggcctgtgttcatggggccaggtggcattgcgtatgaa 448
|| || |||||||| |||||||| || ||||||||||| || || ||||| ||||| ||
Sbjct: 69 gacgcggacttcgggtggggccgccccgtgttcatgggccccggcggcatcgcgtacgag 128
Query: 449 ggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctgtccattgctatctcg 508
|| || ||||| || ||||| || || || ||||||||||||||||| | || ||||||
Sbjct: 129 gggctcgcgttcgtgctccccagcgccaaccgcgacggcagcctgtccgtggccatctcg 188
Query: 509 ttgcaggctgagcacatggagaagttccggaagct 543
||||||| ||||||||||||||||||||||||||
Sbjct: 189 ctgcaggcggagcacatggagaagttccggaagct 223
>gb|CD222779.1|CD222779 CCC1_24_G08.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_24_G08_A007 3', mRNA sequence
Length = 186
Score = 137 bits (69), Expect = 2e-030
Identities = 97/104 (93%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 613 cccaaattctc--agataaaatactgaagtttcaagtgaacccagtggctgcactttcac 670
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 cccaaattctcccagataaaatactgaagtttcaagtgaacccagtggctgcactttcac 129
Query: 671 -tttgaagacttgcagaggaaattcatggtcacttcattttgtg 713
||||||||||||||||| |||||||||| ||||| |||||||
Sbjct: 130 ttttgaagacttgcagagtaaattcatggccacttacttttgtg 173
>gb|BE355598.1|BE355598 DG1_115_H07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 464
Score = 133 bits (67), Expect = 3e-029
Identities = 178/215 (82%)
Strand = Plus / Plus
Query: 329 gcgcataccttccgctgcccgaacctagggctcaccagctgggtgcgccttcctatccat 388
||||| || ||||| ||||| ||| | ||||||||||||||||||||| | || |||||
Sbjct: 16 gcgcacacgttccggtgccccaacatggggctcaccagctgggtgcgcgtgcccatccac 75
Query: 389 gatgctgacttcggatggggccggcctgtgttcatggggccaggtggcattgcgtatgaa 448
|| | |||||||| ||||||||||| ||||||||||| || || ||||| ||||| ||
Sbjct: 76 gacacggacttcgggtggggccggcccgtgttcatgggccccggcggcatcgcgtacgag 135
Query: 449 ggtctggcgtttgtcctcccaagtgcaaatggcgacggcagcctgtccattgctatctcg 508
|| || ||||| || ||||| || || || |||||||||||||||| | || ||||||
Sbjct: 136 gggctcgcgttcgtgctccccagcgccaaccgcgacggcagcctgtcagtggccatctcg 195
Query: 509 ttgcaggctgagcacatggagaagttccggaagct 543
||||||| ||||||||| ||||||||||||||||
Sbjct: 196 ctgcaggcggagcacatgtagaagttccggaagct 230
>gb|CF761981.1|CF761981 DSAF1_86_D08.b1_A011 Drought-stressed after flowering Sorghum
bicolor cDNA clone DSAF1_86_D08_A011 5', mRNA sequence
Length = 423
Score = 87.7 bits (44), Expect = 2e-015
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 480 gcgacggcagcctgtccattgctatctcgttgcaggctgagcacatggagaagttccgga 539
||||||||||||||||| | || |||||| ||||||| ||||||||||||||||||||||
Sbjct: 49 gcgacggcagcctgtccgtggccatctcgctgcaggcggagcacatggagaagttccgga 108
Query: 540 agct 543
||||
Sbjct: 109 agct 112
>gb|CW350519.1|CW350519 fsbb001f011o02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f011o02, DNA
sequence
Length = 687
Score = 69.9 bits (35), Expect = 4e-010
Identities = 72/82 (87%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 714 agattaattatagagaaagggtagaaattatatg--aagaaacatagtaaaaaatcattg 771
|||| |||||||||||||||||||| ||| | || |||||||||||||||| ||||||
Sbjct: 71 agatcaattatagagaaagggtagacattttctgtgaagaaacatagtaaaac-tcattg 129
Query: 772 ttaggaacaaactccaatagca 793
| |||||||| |||||||||||
Sbjct: 130 taaggaacaagctccaatagca 151
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 201,186
Number of Sequences: 832831
Number of extensions: 201186
Number of successful extensions: 51907
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51843
Number of HSP's gapped (non-prelim): 39
length of query: 886
length of database: 491,359,669
effective HSP length: 20
effective length of query: 866
effective length of database: 474,703,049
effective search space: 411092840434
effective search space used: 411092840434
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)