BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2594405.2.1
         (637 letters)

Database: Sorghum_nucl_with_EST.fasta 
           832,831 sequences; 491,359,669 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BG464434.1|BG464434  EM1_69_G06.g1_A002 Embryo 1 (EM1) So...   868   0.0  
gb|BF586687.1|BF586687  FM1_30_E11.b1_A003 Floral-Induced Me...    40   0.24 
gb|AY144442.1|  Sorghum bicolor BAC 95A23/98N8.1 Rph region,...    40   0.24 

>gb|BG464434.1|BG464434 EM1_69_G06.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
           sequence
          Length = 582

 Score =  868 bits (438), Expect = 0.0
 Identities = 513/538 (95%)
 Strand = Plus / Minus

                                                                       
Query: 87  gtgttcaacacctcagtacatcgctaaaatacaggacaggcgcatgatttcccacacatt 146
           ||||||||||||||||||| |||||| ||||||||||| | |||||||||||||||||||
Sbjct: 553 gtgttcaacacctcagtacctcgctacaatacaggacacgtgcatgatttcccacacatt 494

                                                                       
Query: 147 aaacattcagagcgatcacctgaaccgggctatccttgtcaacaacaaacgatctagcta 206
           |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 493 aaacattcagagtgatcacctgaaccgggctatccttatcaacaacaaacgatctagcta 434

                                                                       
Query: 207 ccttgcctgaaggcgtgttcacttccactgtgtacgaaccatggtatcctctgaacttaa 266
           |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 433 ccttgcctgaaggcgtgtccacttccacggtgtacgaaccatggtatcctctgaacttaa 374

                                                                       
Query: 267 actctccttggtgatcgacactgccgttcatacgggtcagccactcttgtttgagagcaa 326
           ||||||||||| |||||||| |||||||  ||||||||||||||||||||||||||||||
Sbjct: 373 actctccttggcgatcgacattgccgttggtacgggtcagccactcttgtttgagagcaa 314

                                                                       
Query: 327 ggtacctcctgccagcctcgttgattgtcccatcagcatcgaccagatgggcgtgctctc 386
           ||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 313 ggtaccttctgccagcctcgttgattgtcccatcagcatccaccagatgcgcgtgctctc 254

                                                                       
Query: 387 gaaacataaacatctcccagaatccccagaggatgattccccccacagcaggatgtgcaa 446
           |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 253 gaaacataaacatctcccagaatccccaaaggatgattccccctacagcaggatgtgcaa 194

                                                                       
Query: 447 atgcttcccggaggaacacctctagatcatcagctcgtatgtgctcgttctctgctgtga 506
           ||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 193 atgcttcgcggaggaacacctctagatcatcagctcgtatgtgttcattctctgctgtga 134

                                                                       
Query: 507 catccaactcagtaatccagatcgggagacccagtatggcgagcttgtccagggaatcac 566
           ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 133 catccaattcagtaatccagatcgggagacctagtatggcgagcttgtccagggaatcgc 74

                                                                     
Query: 567 atatgatttctcctaccggatggctgatatgaccttgcacaccgatcccaccaactgg 624
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  atatgatttctcccactggatggctgatatgaccttgcacaccgatcccaccaactgg 16



>gb|BF586687.1|BF586687 FM1_30_E11.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
           propinquum cDNA, mRNA sequence
          Length = 577

 Score = 40.1 bits (20), Expect = 0.24
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 256 tctgaacttaaactctcctt 275
           ||||||||||||||||||||
Sbjct: 119 tctgaacttaaactctcctt 100



>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence
          Length = 268433

 Score = 40.1 bits (20), Expect = 0.24
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    actgtgtacgaaccatggta 252
              ||||||||||||||||||||
Sbjct: 113917 actgtgtacgaaccatggta 113936



  Database: Sorghum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:54 PM
  Number of letters in database: 491,359,669
  Number of sequences in database:  832,831
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 127,580
Number of Sequences: 832831
Number of extensions: 127580
Number of successful extensions: 31689
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31664
Number of HSP's gapped (non-prelim): 25
length of query: 637
length of database: 491,359,669
effective HSP length: 19
effective length of query: 618
effective length of database: 475,535,880
effective search space: 293881173840
effective search space used: 293881173840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)