BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591258.2.1
(819 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX609300.1|CX609300 ANR1_11_G12.g1_A002 Anaerobic roots ... 654 0.0
gb|CX609214.1|CX609214 ANR1_11_G12.b1_A002 Anaerobic roots ... 553 e-156
gb|CW277062.1|CW277062 104_751_11405822_116_35410_063 Sorgh... 170 1e-040
gb|BG559195.1|BG559195 RHIZ2_55_G08.g1_A003 Rhizome2 (RHIZ2... 111 1e-022
gb|CW265394.1|CW265394 104_734_11231851_148_35263_070 Sorgh... 103 3e-020
gb|BE360322.1|BE360322 DG1_62_C12.g1_A002 Dark Grown 1 (DG1... 103 3e-020
gb|BE360832.1|BE360832 DG1_67_F09.b2_A002 Dark Grown 1 (DG1... 103 3e-020
gb|BE360918.1|BE360918 DG1_67_F09.g1_A002 Dark Grown 1 (DG1... 103 3e-020
gb|BE363151.1|BE363151 DG1_9_E08.g1_A002 Dark Grown 1 (DG1)... 103 3e-020
gb|BG356843.1|BG356843 OV2_10_F11.g1_A002 Ovary 2 (OV2) Sor... 103 3e-020
gb|CD229128.1|CD229128 CCC1_13_F11.b1_A007 Callus culture/c... 103 3e-020
gb|CD429550.1|CD429550 ETH1_14_C02.b1_A002 Ethylene-treated... 103 3e-020
gb|CF427166.1|CF427166 PH1_4_H04.b1_A002 Phosphorous-defici... 103 3e-020
gb|CN127149.1|CN127149 RHOH1_21_G07.b1_A002 Acid- and alkal... 103 3e-020
gb|CN128863.1|CN128863 RHOH1_32_C05.b1_A002 Acid- and alkal... 103 3e-020
gb|CN128942.1|CN128942 RHOH1_32_C05.g1_A002 Acid- and alkal... 103 3e-020
gb|CN137990.1|CN137990 OX1_61_C04.b1_A002 Oxidatively-stres... 103 3e-020
gb|CN138077.1|CN138077 OX1_61_C04.g1_A002 Oxidatively-stres... 103 3e-020
gb|CN127238.1|CN127238 RHOH1_21_G07.g3_A002 Acid- and alkal... 98 2e-018
gb|CF480279.1|CF480279 POL1_64_F12.g1_A002 Pollen Sorghum b... 96 6e-018
gb|CF479933.1|CF479933 POL1_62_E11.g1_A002 Pollen Sorghum b... 90 4e-016
gb|CN132666.1|CN132666 OX1_7_B07.g1_A002 Oxidatively-stress... 86 6e-015
gb|CF428636.1|CF428636 PH1_9_G09.g1_A002 Phosphorous-defici... 84 2e-014
gb|CF432632.1|CF432632 NIT1_18_G06.b1_A002 Nitrogen-deficie... 82 9e-014
gb|BG466056.1|BG466056 RHIZ2_48_A08.g1_A003 Rhizome2 (RHIZ2... 80 4e-013
gb|AW282821.1|AW282821 LG1_305_H12.g1_A002 Light Grown 1 (L... 78 1e-012
gb|CW247562.1|CW247562 104_708_11221843_116_35017_070 Sorgh... 76 6e-012
gb|CW463139.1|CW463139 fsbb001f211j12f0 Sorghum methylation... 76 6e-012
gb|BE125749.1|BE125749 DG1_55_H11.b1_A002 Dark Grown 1 (DG1... 70 4e-010
gb|BE363067.1|BE363067 DG1_9_E08.b1_A002 Dark Grown 1 (DG1)... 70 4e-010
gb|CF433879.1|CF433879 NIT1_30_C03.g1_A002 Nitrogen-deficie... 70 4e-010
gb|BI099425.1|BI099425 IP1_41_H11.g1_A002 Immature pannicle... 68 1e-009
gb|BF506887.1|BF506887 10248P-5 Pooled green leaf and root ... 66 5e-009
gb|BF507186.1|BF507186 2604P-8 Pooled green leaf and root t... 66 5e-009
gb|CW268100.1|CW268100 104_738_11401097_148_35299_069 Sorgh... 64 2e-008
gb|CW411486.1|CW411486 fsbb001f106k20f0 Sorghum methylation... 64 2e-008
gb|BE360219.1|BE360219 DG1_62_C12.b1_A002 Dark Grown 1 (DG1... 64 2e-008
gb|BI140992.1|BI140992 IP1_41_G12.b1_A002 Immature pannicle... 64 2e-008
gb|BI141003.1|BI141003 IP1_41_H11.b1_A002 Immature pannicle... 64 2e-008
gb|CD229208.1|CD229208 CCC1_13_F11.g1_A007 Callus culture/c... 64 2e-008
gb|CD428979.1|CD428979 ETH1_1_A03.g1_A002 Ethylene-treated ... 64 2e-008
gb|CD429608.1|CD429608 ETH1_14_C02.g1_A002 Ethylene-treated... 64 2e-008
gb|CF427278.1|CF427278 PH1_4_H04.g1_A002 Phosphorous-defici... 64 2e-008
gb|CF432761.1|CF432761 NIT1_18_G06.g1_A002 Nitrogen-deficie... 64 2e-008
gb|CN123933.1|CN123933 RHOH1_1_D01.g1_A002 Acid- and alkali... 64 2e-008
gb|CN133810.1|CN133810 OX1_18_A10.g1_A002 Oxidatively-stres... 64 2e-008
gb|CN135765.1|CN135765 OX1_38_G08.g1_A002 Oxidatively-stres... 64 2e-008
gb|CW124219.1|CW124219 104_503_11111651_148_34693_034 Sorgh... 62 9e-008
gb|CW249842.1|CW249842 104_711_11223062_148_35048_051 Sorgh... 62 9e-008
gb|BE361185.1|BE361185 DG1_70_D12.b1_A002 Dark Grown 1 (DG1... 62 9e-008
gb|BE361254.1|BE361254 DG1_70_D12.g1_A002 Dark Grown 1 (DG1... 62 9e-008
gb|CD430220.1|CD430220 ETH1_17_C09.g1_A002 Ethylene-treated... 60 3e-007
gb|BI351083.1|BI351083 IP1_69_F01.g1_A002 Immature pannicle... 58 1e-006
gb|BG101966.1|BG101966 RHIZ2_22_A05.g1_A003 Rhizome2 (RHIZ2... 54 2e-005
gb|BG241494.1|BG241494 RHIZ2_50_A05.g1_A003 Rhizome2 (RHIZ2... 54 2e-005
gb|BZ628759.1|BZ628759 ih62b02.g1 WGS-SbicolorF (DH5a methy... 52 8e-005
gb|CW180236.1|CW180236 104_594_11160530_116_36635_003 Sorgh... 52 8e-005
gb|CW318948.1|CW318948 104_811_11474228_116_35879_074 Sorgh... 52 8e-005
gb|CW318949.1|CW318949 104_811_11474228_148_35883_074 Sorgh... 52 8e-005
gb|AW676905.1|AW676905 DG1_2_H03.b1_A002 Dark Grown 1 (DG1)... 52 8e-005
gb|AW676996.1|AW676996 DG1_3_D03.b1_A002 Dark Grown 1 (DG1)... 52 8e-005
gb|BE356694.1|BE356694 DG1_12_D07.b1_A002 Dark Grown 1 (DG1... 52 8e-005
gb|BG557547.1|BG557547 EM1_54_G11.b1_A002 Embryo 1 (EM1) So... 52 8e-005
gb|BE362957.2|BE362957 DG1_92_G01.b1_A002 Dark Grown 1 (DG1... 52 8e-005
gb|CD236225.1|CD236225 SS1_32_B09.g1_A012 Salt-stressed see... 52 8e-005
gb|CD429497.1|CD429497 ETH1_4_H03.g1_A002 Ethylene-treated ... 52 8e-005
gb|CD430207.1|CD430207 ETH1_17_H03.g1_A002 Ethylene-treated... 52 8e-005
gb|CD462624.1|CD462624 ETH1_38_E02.g1_A002 Ethylene-treated... 52 8e-005
gb|CF429208.1|CF429208 PH1_20_C03.g1_A002 Phosphorous-defic... 52 8e-005
gb|CF431071.1|CF431071 NIT1_4_G11.g1_A002 Nitrogen-deficien... 52 8e-005
gb|CF432712.1|CF432712 NIT1_18_A03.g1_A002 Nitrogen-deficie... 52 8e-005
gb|CN137489.1|CN137489 OX1_57_D04.g1_A002 Oxidatively-stres... 52 8e-005
gb|CN146340.1|CN146340 WOUND1_39_D11.g1_A002 Wounded leaves... 52 8e-005
gb|CX612853.1|CX612853 GABR1_4_G09.g1_A002 GA- or brassinol... 52 8e-005
gb|BZ628758.1|BZ628758 ih62b02.b1 WGS-SbicolorF (DH5a methy... 50 3e-004
gb|BG102197.1|BG102197 RHIZ2_22_A05.b1_A003 Rhizome2 (RHIZ2... 50 3e-004
gb|CN146262.1|CN146262 WOUND1_39_D11.b1_A002 Wounded leaves... 50 3e-004
gb|BG357173.1|BG357173 OV2_10_F11.b1_A002 Ovary 2 (OV2) Sor... 48 0.001
gb|BG465738.1|BG465738 RHIZ2_48_A08.b1_A003 Rhizome2 (RHIZ2... 48 0.001
gb|BI076233.1|BI076233 IP1_27_E07.b1_A002 Immature pannicle... 48 0.001
gb|CL177459.1|CL177459 104_384_10893845_116_31916_293 Sorgh... 46 0.005
gb|BE363001.2|BE363001 DG1_92_G01.g1_A002 Dark Grown 1 (DG1... 46 0.005
gb|CD236128.1|CD236128 SS1_32_B09.b1_A012 Salt-stressed see... 46 0.005
gb|CF481379.1|CF481379 POL1_71_D05.g1_A002 Pollen Sorghum b... 46 0.005
gb|CX612764.1|CX612764 GABR1_4_G09.b1_A002 GA- or brassinol... 46 0.005
gb|CW180237.1|CW180237 104_594_11160530_148_36631_003 Sorgh... 44 0.020
gb|CW184571.1|CW184571 104_600_11165220_116_36688_034 Sorgh... 44 0.020
gb|CW249841.1|CW249841 104_711_11223062_116_35044_051 Sorgh... 44 0.020
gb|AW923175.1|AW923175 DG1_49_A09.g1_A002 Dark Grown 1 (DG1... 44 0.020
gb|BE353027.1|BE353027 DG1_2_H03.g1_A002 Dark Grown 1 (DG1)... 44 0.020
gb|BE356814.1|BE356814 DG1_12_D07.g1_A002 Dark Grown 1 (DG1... 44 0.020
gb|BG103195.1|BG103195 RHIZ2_19_D03.g1_A003 Rhizome2 (RHIZ2... 44 0.020
gb|BG103368.1|BG103368 RHIZ2_19_D03.b1_A003 Rhizome2 (RHIZ2... 44 0.020
gb|BG557655.1|BG557655 EM1_54_G11.g1_A002 Embryo 1 (EM1) So... 44 0.020
gb|BG559614.1|BG559614 RHIZ2_71_B07.g1_A003 Rhizome2 (RHIZ2... 44 0.020
gb|CD462503.1|CD462503 ETH1_38_E02.b1_A002 Ethylene-treated... 42 0.079
gb|CN137417.1|CN137417 OX1_57_D04.b1_A002 Oxidatively-stres... 42 0.079
gb|BZ366125.1|BZ366125 ic94g10.g1 WGS-SbicolorF (JM107 adap... 40 0.31
gb|CW049167.1|CW049167 104_288_10513862_115_30199 Sorghum m... 40 0.31
gb|CW232860.1|CW232860 104_685_11213045_148_37487_019 Sorgh... 40 0.31
gb|CW235387.1|CW235387 104_690_11214955_116_37409_070 Sorgh... 40 0.31
gb|CW235388.1|CW235388 104_690_11214955_148_37413_070 Sorgh... 40 0.31
gb|CW498056.1|CW498056 fsbb001f291b22k0 Sorghum methylation... 40 0.31
gb|AW676989.1|AW676989 DG1_3_F03.b1_A002 Dark Grown 1 (DG1)... 40 0.31
>gb|CX609300.1|CX609300 ANR1_11_G12.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_11_G12_A002 5', mRNA sequence
Length = 659
Score = 654 bits (330), Expect = 0.0
Identities = 427/458 (93%), Gaps = 1/458 (0%)
Strand = Plus / Minus
Query: 302 gagcggttcgtcgtggggcgcggccacggacccgccccacagcgtgttgtcgtaggcgat 361
|||||| |||||| ||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 651 gagcggctcgtcgggggacgcgaccacggagccgccccacagcgtgttgtcgtaggcgat 592
Query: 362 gaggcccccgaccctgagcagctgcagcagccgctcgtggtagttgaggaagttcacctt 421
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gaggcccccgaccctgaccagctgcagcagccgctcgtggtagttgaggaagttcacctt 532
Query: 422 gtccgcgtccacgaacgcgaagtcgaacttgcccttgttcccctcctcggaaaccatctg 481
||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 531 gtccgcgtccacgaaggcgaagtcgaacctgcccttgttcccctcctcggccaccatctg 472
Query: 482 gtccagcacgggcagcgcgagcccgacgcggaagtcgatcttgtgcgccacgccggcctt 541
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 471 gtccagcaccggcagcgcgagcctgacgcggaagtcgatcttgtgcgccacgccggcctt 412
Query: 542 ctcgatcaccggcgacccaatctggtcgtagctctcgcgggtaacgtcgatggccacaat 601
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 411 gtcgatcaccggcgatcctatctggtcgtagctctcgcgggtgacgtcgatggccacgat 352
Query: 602 cttgccgtcgtcggggagggcgagggcggtgaacgagcagcgagtacccggtgaagacgc 661
|||||| | ||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 351 cttgccattgtcagggagggcgagggcggtg-gcgagcagcgagtagccggtgaagacgc 293
Query: 662 caacctcgatggcgttcttggcgccaagaatctcgatcaggagctgcagcagctgcacct 721
| ||||||| ||||||||||||||| || ||||||||||||||| ||||||||||||||
Sbjct: 292 cgacctcgacggcgttcttggcgccgagcatctcgatcaggagccccagcagctgcacct 233
Query: 722 cgtccggcgacgcagccatgcccgccatggggtgggtg 759
||||||||||||| |||||||| |||||||||||||||
Sbjct: 232 cgtccggcgacgccgccatgccagccatggggtgggtg 195
>gb|CX609214.1|CX609214 ANR1_11_G12.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_11_G12_A002 3', mRNA sequence
Length = 617
Score = 553 bits (279), Expect = e-156
Identities = 366/394 (92%), Gaps = 1/394 (0%)
Strand = Plus / Minus
Query: 302 gagcggttcgtcgtggggcgcggccacggacccgccccacagcgtgttgtcgtaggcgat 361
|||||| |||||| ||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 393 gagcggctcgtcgggggacgcgaccacggagccgccccacagcgtgttgtcgtaggcgat 334
Query: 362 gaggcccccgaccctgagcagctgcagcagccgctcgtggtagttgaggaagttcacctt 421
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gaggcccccgaccctgaccagctgcagcagccgctcgtggtagttgaggaagttcacctt 274
Query: 422 gtccgcgtccacgaacgcgaagtcgaacttgcccttgttcccctcctcggaaaccatctg 481
||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 273 gtccgcgtccacgaaggcgaagtcgaacctgcccttgttcccctcctcggccaccatctg 214
Query: 482 gtccagcacgggcagcgcgagcccgacgcggaagtcgatcttgtgcgccacgccggcctt 541
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gtccagcaccggcagcgcgagcccgacgcggaagtcgatcttgtgcgccacgccggcctt 154
Query: 542 ctcgatcaccggcgacccaatctggtcgtagctctcgcgggtaacgtcgatggccacaat 601
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 153 gtcgatcaccggcgatcctatctggtcgtagctctcgcgggtgacgtcgatggccacgat 94
Query: 602 cttgccgtcgtcggggagggcgagggcggtgaacgagcagcgagtacccggtgaagacgc 661
|||||| | ||| |||||||||||||||||| ||| || |||||| |||||||||||||
Sbjct: 93 cttgccattgtcagggagggcgagggcggtg-gcgaacancgagtagccggtgaagacgc 35
Query: 662 caacctcgatggcgttcttggcgccaagaatctc 695
| ||||||| ||||||||||||||| || |||||
Sbjct: 34 cgacctcgacggcgttcttggcgccgagcatctc 1
Score = 165 bits (83), Expect = 8e-039
Identities = 102/109 (93%)
Strand = Plus / Minus
Query: 177 gcgacgcggcggcacagcgngagcccgtcggcgatggcgacctggcagacgtgaacgcgg 236
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 497 gcgacgcggcggcacagcgtgagcccgtcggcgatggcgacctggcagacgtgcacgcgg 438
Query: 237 ggatcggcggccacggccgcgttgaactccctggnggccgcagcgagcg 285
||||||||||| | ||| |||||||||||||||| |||||| |||||||
Sbjct: 437 ggatcggcggcgatggcggcgttgaactccctggtggccgcggcgagcg 389
Score = 50.1 bits (25), Expect = 3e-004
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 40 ggctgggggatttattttcactcaagcccagttcgctattacagaccatggccattt 96
|||||| |||||||||||| |||| | || ||||| ||||||| |||||||||||||
Sbjct: 614 ggctggtggatttattttcgctca-gaccggttcgttattacacaccatggccattt 559
>gb|CW277062.1|CW277062 104_751_11405822_116_35410_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405822, DNA
sequence
Length = 706
Score = 170 bits (86), Expect = 1e-040
Identities = 129/142 (90%), Gaps = 1/142 (0%)
Strand = Plus / Plus
Query: 602 cttgccgtcgtcggggagggcgagggcggtgaacgagcagcgagtacccggtgaagacgc 661
|||||| | ||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 47 cttgccattgtcagggagggcgagggcggtgg-cgagcagcgagtagccggtgaagacgc 105
Query: 662 caacctcgatggcgttcttggcgccaagaatctcgatcaggagctgcagcagctgcacct 721
| ||||||| ||||||||||||||| || ||||||||||||||| ||||||||||||||
Sbjct: 106 cgacctcgacggcgttcttggcgccgagcatctcgatcaggagccccagcagctgcacct 165
Query: 722 cgtccggcgacgcagccatgcc 743
||||||||||||| ||||||||
Sbjct: 166 cgtccggcgacgccgccatgcc 187
>gb|BG559195.1|BG559195 RHIZ2_55_G08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 449
Score = 111 bits (56), Expect = 1e-022
Identities = 98/112 (87%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||||||
Sbjct: 285 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccgctc 226
Query: 398 gtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||||||||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 225 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 174
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 115 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 76
>gb|CW265394.1|CW265394 104_734_11231851_148_35263_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231851, DNA
sequence
Length = 649
Score = 103 bits (52), Expect = 3e-020
Identities = 97/112 (86%)
Strand = Plus / Plus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||| ||
Sbjct: 317 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccggtc 376
Query: 398 gtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||||||||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 377 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 428
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 568 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 607
>gb|BE360322.1|BE360322 DG1_62_C12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 572
Score = 103 bits (52), Expect = 3e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||| ||
Sbjct: 183 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccggtc 124
Query: 398 gtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||||||||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 123 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 72
>gb|BE360832.1|BE360832 DG1_67_F09.b2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 621
Score = 103 bits (52), Expect = 3e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||| ||
Sbjct: 572 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccggtc 513
Query: 398 gtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||||||||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 512 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 461
>gb|BE360918.1|BE360918 DG1_67_F09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 586
Score = 103 bits (52), Expect = 3e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||| ||
Sbjct: 213 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccggtc 154
Query: 398 gtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||||||||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 153 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 102
>gb|BE363151.1|BE363151 DG1_9_E08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 440
Score = 103 bits (52), Expect = 3e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||| ||
Sbjct: 304 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccggtc 245
Query: 398 gtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||||||||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 244 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 193
>gb|BG356843.1|BG356843 OV2_10_F11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 541
Score = 103 bits (52), Expect = 3e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||| ||
Sbjct: 249 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccggtc 190
Query: 398 gtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||||||||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 189 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 138
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 79 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 40
>gb|CD229128.1|CD229128 CCC1_13_F11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_13_F11_A007 3', mRNA sequence
Length = 542
Score = 103 bits (52), Expect = 3e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||| ||
Sbjct: 136 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccggtc 77
Query: 398 gtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||||||||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 76 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 25
>gb|CD429550.1|CD429550 ETH1_14_C02.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_14_C02_A002 3', mRNA sequence
Length = 604
Score = 103 bits (52), Expect = 3e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||| ||
Sbjct: 215 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccggtc 156
Query: 398 gtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||||||||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 155 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 104
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 45 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 6
>gb|CF427166.1|CF427166 PH1_4_H04.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_4_H04_A002 3', mRNA sequence
Length = 573
Score = 103 bits (52), Expect = 3e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||| ||
Sbjct: 190 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccggtc 131
Query: 398 gtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||||||||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 130 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 79
>gb|CN127149.1|CN127149 RHOH1_21_G07.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_G07_A002 3', mRNA sequence
Length = 819
Score = 103 bits (52), Expect = 3e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||| ||
Sbjct: 382 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccggtc 323
Query: 398 gtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||||||||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 322 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 271
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 212 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 173
Score = 48.1 bits (24), Expect = 0.001
Identities = 97/120 (80%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 567 tcgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagg 626
|||||| |||||||| | | ||| ||||||| ||| ||||||| || ||||| |||||
Sbjct: 156 tcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagagcgagc 97
Query: 627 gcggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
|||||| |||| || ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 96 gcggtgg-cgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 38
>gb|CN128863.1|CN128863 RHOH1_32_C05.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_32_C05_A002 3', mRNA sequence
Length = 752
Score = 103 bits (52), Expect = 3e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||| ||
Sbjct: 364 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccggtc 305
Query: 398 gtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||||||||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 304 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 253
Score = 60.0 bits (30), Expect = 3e-007
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 510 cggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||| || |||||||||||||||||
Sbjct: 192 cggaagtcgatcttgtgggcgacgccggccttctcgat 155
>gb|CN128942.1|CN128942 RHOH1_32_C05.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_32_C05_A002 5', mRNA sequence
Length = 826
Score = 103 bits (52), Expect = 3e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||| ||
Sbjct: 610 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccggtc 551
Query: 398 gtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||||||||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 550 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 499
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 440 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 401
>gb|CN137990.1|CN137990 OX1_61_C04.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_C04_A002 3', mRNA sequence
Length = 716
Score = 103 bits (52), Expect = 3e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||| ||
Sbjct: 257 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccggtc 198
Query: 398 gtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||||||||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 197 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 146
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 87 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 48
>gb|CN138077.1|CN138077 OX1_61_C04.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_61_C04_A002 5', mRNA sequence
Length = 809
Score = 103 bits (52), Expect = 3e-020
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||| ||
Sbjct: 736 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccggtc 677
Query: 398 gtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||||||||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 676 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 625
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 566 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 527
Score = 48.1 bits (24), Expect = 0.001
Identities = 97/120 (80%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 567 tcgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagg 626
|||||| |||||||| | | ||| ||||||| ||| ||||||| || ||||| |||||
Sbjct: 510 tcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagagcgagc 451
Query: 627 gcggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
|||||| |||| || ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 450 gcggtgg-cgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 392
>gb|CN127238.1|CN127238 RHOH1_21_G07.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_21_G07_A002 5', mRNA sequence
Length = 859
Score = 97.6 bits (49), Expect = 2e-018
Identities = 96/112 (85%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||| ||
Sbjct: 730 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccggtc 671
Query: 398 gtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||||||||| |||| ||| ||| ||||||||||| |||||||||||
Sbjct: 670 gtggtagttgaggtagttgtcctngtcggcgtccacgaagacgaagtcgaac 619
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 560 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 521
Score = 48.1 bits (24), Expect = 0.001
Identities = 97/120 (80%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 567 tcgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagg 626
|||||| |||||||| | | ||| ||||||| ||| ||||||| || ||||| |||||
Sbjct: 504 tcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagagcgagc 445
Query: 627 gcggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
|||||| |||| || ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 444 gcggtgg-cgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 386
>gb|CF480279.1|CF480279 POL1_64_F12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_64_F12_A002 5', mRNA sequence
Length = 649
Score = 95.6 bits (48), Expect = 6e-018
Identities = 96/112 (85%)
Strand = Plus / Plus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | ||||| |||||||| ||
Sbjct: 390 ccacagcgtgttgtcgtagccgatgaggccccccagcttcgccagcttgagcagccggtc 449
Query: 398 gtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
||||||||||||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 450 gtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 501
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 560 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 599
>gb|CF479933.1|CF479933 POL1_62_E11.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_62_E11_A002 5', mRNA sequence
Length = 651
Score = 89.7 bits (45), Expect = 4e-016
Identities = 98/113 (86%), Gaps = 2/113 (1%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctg-agcagctgcagcagccgct 396
||||||||||||||||||| ||||||||||||| | || | |||||| |||||||| |
Sbjct: 554 ccacagcgtgttgtcgtagccgatgaggccccccaggcttcaccagctg-agcagccggt 496
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
|||||||||||||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 495 cgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 443
Score = 48.1 bits (24), Expect = 0.001
Identities = 97/120 (80%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 567 tcgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagg 626
|||||| |||||||| | | ||| ||||||| ||| ||||||| || ||||| |||||
Sbjct: 323 tcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagagcgagc 264
Query: 627 gcggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
|||||| |||| || ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 263 gcggtgg-cgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 205
Score = 40.1 bits (20), Expect = 0.31
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 520 tcttgtgcgccacgccggccttctcgat 547
||||||| || |||||||||||||||||
Sbjct: 367 tcttgtgggcgacgccggccttctcgat 340
>gb|CN132666.1|CN132666 OX1_7_B07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_7_B07_A002 5', mRNA sequence
Length = 773
Score = 85.7 bits (43), Expect = 6e-015
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||| ||
Sbjct: 586 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccggtc 527
Query: 398 gtggtagttgaggaagttcaccttgtccgcgtcca 432
||||||||||||| |||| ||||||| |||||||
Sbjct: 526 gtggtagttgaggtagttgtccttgtcggcgtcca 492
Score = 42.1 bits (21), Expect = 0.079
Identities = 82/101 (81%), Gaps = 1/101 (0%)
Strand = Plus / Minus
Query: 586 cgtcgatggccacaatcttgccgtcgtcggggagggcgagggcggtgaacgagcagcgag 645
|||| ||||||| ||| ||||||| || ||||| ||||| |||||| |||| || |||
Sbjct: 497 cgtccatggccaagatcgtgccgtcctccgggagagcgagcgcggtgg-cgaggagggag 439
Query: 646 tacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
|| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 438 tagccggtgtagacgccgatctccatggtcttcttggcgcc 398
>gb|CF428636.1|CF428636 PH1_9_G09.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_9_G09_A002 5', mRNA sequence
Length = 756
Score = 83.8 bits (42), Expect = 2e-014
Identities = 96/113 (84%), Gaps = 1/113 (0%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctg-agcagctgcagcagccgct 396
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||| |
Sbjct: 740 ccacagcgtgttgtcgtagccgatgaggccccccagctttcaccagcttgagcagccggt 681
Query: 397 cgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
|||||||||||||| |||| ||| ||| ||||||||||| |||||||||||
Sbjct: 680 cgtggtagttgaggtagttgtcctngtcggcgtccacgaagacgaagtcgaac 628
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 569 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 530
Score = 48.1 bits (24), Expect = 0.001
Identities = 97/120 (80%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 567 tcgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagg 626
|||||| |||||||| | | ||| ||||||| ||| ||||||| || ||||| |||||
Sbjct: 513 tcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagagcgagc 454
Query: 627 gcggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
|||||| |||| || ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 453 gcggtgg-cgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 395
>gb|CF432632.1|CF432632 NIT1_18_G06.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_18_G06_A002 3', mRNA sequence
Length = 610
Score = 81.8 bits (41), Expect = 9e-014
Identities = 96/113 (84%), Gaps = 1/113 (0%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||| ||||||||||| ||||||||||||| | | | | ||||| |||||||| ||
Sbjct: 220 ccacagcatgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccggtc 161
Query: 398 gtgg-tagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcgaac 449
|||| ||||||||| |||| ||||||| ||||||||||| |||||||||||
Sbjct: 160 gtgggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaac 108
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 49 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 10
>gb|BG466056.1|BG466056 RHIZ2_48_A08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 512
Score = 79.8 bits (40), Expect = 4e-013
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||||||
Sbjct: 92 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccgctc 33
Query: 398 gtggtagttgaggaagttcaccttgtccgcgt 429
| ||||||||||| |||| ||||||| ||||
Sbjct: 32 ggggtagttgaggtagttgtccttgtcggcgt 1
>gb|AW282821.1|AW282821 LG1_305_H12.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 464
Score = 77.8 bits (39), Expect = 1e-012
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||| ||
Sbjct: 89 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccggtc 30
Query: 398 gtggtagttgaggaagttcaccttgtc 424
||||||||||||| |||| |||||||
Sbjct: 29 gtggtagttgaggtagttgtccttgtc 3
>gb|CW247562.1|CW247562 104_708_11221843_116_35017_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11221843, DNA
sequence
Length = 570
Score = 75.8 bits (38), Expect = 6e-012
Identities = 101/122 (82%)
Strand = Plus / Plus
Query: 327 acggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgc 386
||||| |||||||| ||||||||||||||||||| | ||| ||||| || |||| ||
Sbjct: 247 acggagccgccccagagcgtgttgtcgtaggcgagcacgccgccgacgaggaccagccgc 306
Query: 387 agcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcg 446
|| ||||||||||||||| | | || || ||||||| ||||| |||||||||||||||
Sbjct: 307 aggagccgctcgtggtagccgccgtagctctccttgtcggcgtcgacgaacgcgaagtcg 366
Query: 447 aa 448
||
Sbjct: 367 aa 368
>gb|CW463139.1|CW463139 fsbb001f211j12f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f211j12, DNA
sequence
Length = 739
Score = 75.8 bits (38), Expect = 6e-012
Identities = 101/122 (82%)
Strand = Plus / Minus
Query: 327 acggacccgccccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgc 386
||||| |||||||| ||||||||||||||||||| | ||| ||||| || |||| ||
Sbjct: 709 acggagccgccccagagcgtgttgtcgtaggcgagcacgccgccgacgaggaccagccgc 650
Query: 387 agcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcg 446
|| ||||||||||||||| | | || || ||||||| ||||| |||||||||||||||
Sbjct: 649 aggagccgctcgtggtagccgccgtagctctccttgtcggcgtcgacgaacgcgaagtcg 590
Query: 447 aa 448
||
Sbjct: 589 aa 588
>gb|BE125749.1|BE125749 DG1_55_H11.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 464
Score = 69.9 bits (35), Expect = 4e-010
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 387 agcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcg 446
|||||||| ||||||||||||||| |||| ||||||| ||||||||||| ||||||||
Sbjct: 437 agcagccggtcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcg 378
Query: 447 aac 449
|||
Sbjct: 377 aac 375
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 316 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 277
Score = 48.1 bits (24), Expect = 0.001
Identities = 97/120 (80%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 567 tcgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagg 626
|||||| |||||||| | | ||| ||||||| ||| ||||||| || ||||| |||||
Sbjct: 260 tcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagagcgagc 201
Query: 627 gcggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
|||||| |||| || ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 200 gcggtgg-cgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 142
>gb|BE363067.1|BE363067 DG1_9_E08.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 548
Score = 69.9 bits (35), Expect = 4e-010
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 387 agcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcg 446
|||||||| ||||||||||||||| |||| ||||||| ||||||||||| ||||||||
Sbjct: 523 agcagccggtcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcg 464
Query: 447 aac 449
|||
Sbjct: 463 aac 461
>gb|CF433879.1|CF433879 NIT1_30_C03.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_30_C03_A002 5', mRNA sequence
Length = 670
Score = 69.9 bits (35), Expect = 4e-010
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 387 agcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcg 446
|||||||| ||||||||||||||| |||| ||||||| ||||||||||| ||||||||
Sbjct: 668 agcagccggtcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcg 609
Query: 447 aac 449
|||
Sbjct: 608 aac 606
Score = 56.0 bits (28), Expect = 5e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| | |||||||||||||||||
Sbjct: 547 cgcggaagtcgatcttgtgggtgacgccggccttctcgat 508
Score = 40.1 bits (20), Expect = 0.31
Identities = 96/120 (80%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 567 tcgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagg 626
|||||| |||||||| | | ||| ||||||| | | ||||||| || ||||| |||||
Sbjct: 491 tcgtagttctcgcggttgatgtccatggccaagaccgtgccgtcctccgggagagcgagc 432
Query: 627 gcggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
|||||| |||| || ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 431 gcggtgg-cgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 373
>gb|BI099425.1|BI099425 IP1_41_H11.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 495
Score = 67.9 bits (34), Expect = 1e-009
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 338 ccacagcgtgttgtcgtaggcgatgaggcccccgaccctgagcagctgcagcagccgctc 397
||||||||||||||||||| ||||||||||||| | | | | ||||| |||||||| ||
Sbjct: 70 ccacagcgtgttgtcgtagccgatgaggccccccagcttcaccagcttgagcagccggtc 11
Query: 398 gtggtagttg 407
||||||||||
Sbjct: 10 gtggtagttg 1
>gb|BF506887.1|BF506887 10248P-5 Pooled green leaf and root tissue Sorghum bicolor cDNA
clone 10248P-5, mRNA sequence
Length = 116
Score = 65.9 bits (33), Expect = 5e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 40 ggctgggggatttattttcactcaagcccagttcgctattacagaccatggccattt 96
|||||| |||||||||||| |||||| || ||||| ||||||| |||||||||||||
Sbjct: 19 ggctggtggatttattttcgctcaagaccggttcgttattacacaccatggccattt 75
>gb|BF507186.1|BF507186 2604P-8 Pooled green leaf and root tissue Sorghum bicolor cDNA
clone 2604P-8, mRNA sequence
Length = 148
Score = 65.9 bits (33), Expect = 5e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 40 ggctgggggatttattttcactcaagcccagttcgctattacagaccatggccattt 96
|||||| |||||||||||| |||||| || ||||| ||||||| |||||||||||||
Sbjct: 33 ggctggtggatttattttcgctcaagaccggttcggtattacacaccatggccattt 89
>gb|CW268100.1|CW268100 104_738_11401097_148_35299_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11401097, DNA
sequence
Length = 698
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 114 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 153
>gb|CW411486.1|CW411486 fsbb001f106k20f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f106k20, DNA
sequence
Length = 413
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 100 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 139
>gb|BE360219.1|BE360219 DG1_62_C12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 583
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 561 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 522
Score = 48.1 bits (24), Expect = 0.001
Identities = 97/120 (80%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 567 tcgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagg 626
|||||| |||||||| | | ||| ||||||| ||| ||||||| || ||||| |||||
Sbjct: 505 tcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagagcgagc 446
Query: 627 gcggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
|||||| |||| || ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 445 gcggtgg-cgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 387
>gb|BI140992.1|BI140992 IP1_41_G12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 593
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 562 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 523
Score = 48.1 bits (24), Expect = 0.001
Identities = 97/120 (80%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 567 tcgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagg 626
|||||| |||||||| | | ||| ||||||| ||| ||||||| || ||||| |||||
Sbjct: 506 tcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagagcgagc 447
Query: 627 gcggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
|||||| |||| || ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 446 gcggtgg-cgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 388
>gb|BI141003.1|BI141003 IP1_41_H11.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 595
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 562 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 523
Score = 48.1 bits (24), Expect = 0.001
Identities = 97/120 (80%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 567 tcgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagg 626
|||||| |||||||| | | ||| ||||||| ||| ||||||| || ||||| |||||
Sbjct: 506 tcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagagcgagc 447
Query: 627 gcggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
|||||| |||| || ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 446 gcggtgg-cgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 388
>gb|CD229208.1|CD229208 CCC1_13_F11.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_13_F11_A007 5', mRNA sequence
Length = 653
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 568 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 529
Score = 48.1 bits (24), Expect = 0.001
Identities = 97/120 (80%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 567 tcgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagg 626
|||||| |||||||| | | ||| ||||||| ||| ||||||| || ||||| |||||
Sbjct: 512 tcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagagcgagc 453
Query: 627 gcggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
|||||| |||| || ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 452 gcggtgg-cgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 394
>gb|CD428979.1|CD428979 ETH1_1_A03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_1_A03_A002 5', mRNA sequence
Length = 586
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 569 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 530
Score = 48.1 bits (24), Expect = 0.001
Identities = 97/120 (80%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 567 tcgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagg 626
|||||| |||||||| | | ||| ||||||| ||| ||||||| || ||||| |||||
Sbjct: 513 tcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagagcgagc 454
Query: 627 gcggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
|||||| |||| || ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 453 gcggtgg-cgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 395
>gb|CD429608.1|CD429608 ETH1_14_C02.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_14_C02_A002 5', mRNA sequence
Length = 604
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 565 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 526
Score = 48.1 bits (24), Expect = 0.001
Identities = 97/120 (80%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 567 tcgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagg 626
|||||| |||||||| | | ||| ||||||| ||| ||||||| || ||||| |||||
Sbjct: 509 tcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagagcgagc 450
Query: 627 gcggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
|||||| |||| || ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 449 gcggtgg-cgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 391
>gb|CF427278.1|CF427278 PH1_4_H04.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_4_H04_A002 5', mRNA sequence
Length = 600
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 569 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 530
Score = 48.1 bits (24), Expect = 0.001
Identities = 97/120 (80%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 567 tcgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagg 626
|||||| |||||||| | | ||| ||||||| ||| ||||||| || ||||| |||||
Sbjct: 513 tcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagagcgagc 454
Query: 627 gcggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
|||||| |||| || ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 453 gcggtgg-cgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 395
>gb|CF432761.1|CF432761 NIT1_18_G06.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor
cDNA clone NIT1_18_G06_A002 5', mRNA sequence
Length = 603
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 566 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 527
Score = 48.1 bits (24), Expect = 0.001
Identities = 97/120 (80%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 567 tcgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagg 626
|||||| |||||||| | | ||| ||||||| ||| ||||||| || ||||| |||||
Sbjct: 510 tcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagagcgagc 451
Query: 627 gcggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
|||||| |||| || ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 450 gcggtgg-cgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 392
>gb|CN123933.1|CN123933 RHOH1_1_D01.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_1_D01_A002 5', mRNA sequence
Length = 702
Score = 63.9 bits (32), Expect = 2e-008
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 387 agcagccgctcgtggtagttgaggaagttcaccttgtccgcgtccacgaacgcgaagtcg 446
|||||||| ||||||||||||||| |||| ||| ||| ||||||||||| ||||||||
Sbjct: 698 agcagccggtcgtggtagttgaggtagttgtcctngtcggcgtccacgaagacgaagtcg 639
Query: 447 aac 449
|||
Sbjct: 638 aac 636
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 577 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 538
Score = 48.1 bits (24), Expect = 0.001
Identities = 97/120 (80%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 567 tcgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagg 626
|||||| |||||||| | | ||| ||||||| ||| ||||||| || ||||| |||||
Sbjct: 521 tcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagagcgagc 462
Query: 627 gcggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
|||||| |||| || ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 461 gcggtgg-cgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 403
>gb|CN133810.1|CN133810 OX1_18_A10.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_18_A10_A002 5', mRNA sequence
Length = 555
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 540 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 501
Score = 48.1 bits (24), Expect = 0.001
Identities = 97/120 (80%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 567 tcgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagg 626
|||||| |||||||| | | ||| ||||||| ||| ||||||| || ||||| |||||
Sbjct: 484 tcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagagcgagc 425
Query: 627 gcggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
|||||| |||| || ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 424 gcggtgg-cgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 366
>gb|CN135765.1|CN135765 OX1_38_G08.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_38_G08_A002 5', mRNA sequence
Length = 553
Score = 63.9 bits (32), Expect = 2e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 508 cgcggaagtcgatcttgtgcgccacgccggccttctcgat 547
||||||||||||||||||| || |||||||||||||||||
Sbjct: 526 cgcggaagtcgatcttgtgggcgacgccggccttctcgat 487
Score = 48.1 bits (24), Expect = 0.001
Identities = 97/120 (80%), Gaps = 1/120 (0%)
Strand = Plus / Minus
Query: 567 tcgtagctctcgcgggtaacgtcgatggccacaatcttgccgtcgtcggggagggcgagg 626
|||||| |||||||| | | ||| ||||||| ||| ||||||| || ||||| |||||
Sbjct: 470 tcgtagttctcgcggttgatgtccatggccaagatcgtgccgtcctccgggagagcgagc 411
Query: 627 gcggtgaacgagcagcgagtacccggtgaagacgccaacctcgatggcgttcttggcgcc 686
|||||| |||| || ||||| |||||| ||||||| | ||| |||| |||||||||||
Sbjct: 410 gcggtgg-cgaggagggagtagccggtgtagacgccgatctccatggtcttcttggcgcc 352
>gb|CW124219.1|CW124219 104_503_11111651_148_34693_034 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11111651, DNA
sequence
Length = 594
Score = 61.9 bits (31), Expect = 9e-008
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 640 agcgagtacccggtgaagacgccaacctcgatggcgttcttggcgccaagaatctcgatc 699
|||||| | |||||||||||||| ||||||||||||||| | ||||| | || ||||
Sbjct: 456 agcgagcagccggtgaagacgcccacctcgatggcgttcctcgcgccgctcagcttgatc 515
Query: 700 aggagctgcagcagctgcacctcgtccggcg 730
|| | | ||||||||||| ||||||||||||
Sbjct: 516 agcatccgcagcagctgcgcctcgtccggcg 546
Score = 44.1 bits (22), Expect = 0.020
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 510 cggaagtcgatcttgtgcgccacgccggccttctcgat 547
|||||||| | |||||||||||| |||||||| |||||
Sbjct: 330 cggaagtccaccttgtgcgccacaccggccttgtcgat 367
Score = 44.1 bits (22), Expect = 0.020
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 201 ccgtcggcgatggcgacctggcagac 226
|||||||||||||||| |||||||||
Sbjct: 21 ccgtcggcgatggcgagctggcagac 46
Score = 40.1 bits (20), Expect = 0.31
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 324 gccacggacccgccccacagcgtgttgtcgta 355
||||||| ||| |||||||||||||||||||
Sbjct: 144 gccacggtgccgtcccacagcgtgttgtcgta 175
>gb|CW249842.1|CW249842 104_711_11223062_148_35048_051 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11223062, DNA
sequence
Length = 695
Score = 61.9 bits (31), Expect = 9e-008
Identities = 76/91 (83%)
Strand = Plus / Minus
Query: 640 agcgagtacccggtgaagacgccaacctcgatggcgttcttggcgccaagaatctcgatc 699
|||||| | |||||||||||||| ||||||||||||||| | ||||| | || ||||
Sbjct: 428 agcgagcagccggtgaagacgcccacctcgatggcgttcctcgcgccgctcagcttgatc 369
Query: 700 aggagctgcagcagctgcacctcgtccggcg 730
|| | | ||||||||||| ||||||||||||
Sbjct: 368 agcatccgcagcagctgcgcctcgtccggcg 338
Score = 44.1 bits (22), Expect = 0.020
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 510 cggaagtcgatcttgtgcgccacgccggccttctcgat 547
|||||||| | |||||||||||| |||||||| |||||
Sbjct: 554 cggaagtccaccttgtgcgccacaccggccttgtcgat 517
>gb|BE361185.1|BE361185 DG1_70_D12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 532
Score = 61.9 bits (31), Expect = 9e-008
Identities = 76/91 (83%)
Strand = Plus / Minus
Query: 640 agcgagtacccggtgaagacgccaacctcgatggcgttcttggcgccaagaatctcgatc 699
|||||| | |||||||||||||| ||||||||||||||| | ||||| | || ||||
Sbjct: 271 agcgagcagccggtgaagacgcccacctcgatggcgttcctcgcgccgctcagcttgatc 212
Query: 700 aggagctgcagcagctgcacctcgtccggcg 730
|| | | ||||||||||| ||||||||||||
Sbjct: 211 agcatccgcagcagctgcgcctcgtccggcg 181
Score = 44.1 bits (22), Expect = 0.020
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 510 cggaagtcgatcttgtgcgccacgccggccttctcgat 547
|||||||| | |||||||||||| |||||||| |||||
Sbjct: 397 cggaagtccaccttgtgcgccacaccggccttgtcgat 360
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 234,878
Number of Sequences: 832831
Number of extensions: 234878
Number of successful extensions: 73819
Number of sequences better than 0.5: 104
Number of HSP's better than 0.5 without gapping: 100
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 73500
Number of HSP's gapped (non-prelim): 293
length of query: 819
length of database: 491,359,669
effective HSP length: 20
effective length of query: 799
effective length of database: 474,703,049
effective search space: 379287736151
effective search space used: 379287736151
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)