BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591194.2.1
(591 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF421494.1|BF421494 FM1_8_D12.g1_A003 Floral-Induced Mer... 486 e-135
gb|BF586098.1|BF586098 FM1_26_F08.g1_A003 Floral-Induced Me... 486 e-135
gb|BF586907.1|BF586907 FM1_31_H11.g1_A003 Floral-Induced Me... 486 e-135
gb|BG050704.1|BG050704 FM1_71_H08.g1_A003 Floral-Induced Me... 486 e-135
gb|BG103595.1|BG103595 RHIZ2_38_E03.g1_A003 Rhizome2 (RHIZ2... 486 e-135
gb|BG239815.1|BG239815 OV1_29_D04.g1_A002 Ovary 1 (OV1) Sor... 462 e-128
gb|BG465293.1|BG465293 EM1_74_D12.g1_A002 Embryo 1 (EM1) So... 462 e-128
gb|CX606430.1|CX606430 ANR1_3_A12.b1_A002 Anaerobic roots S... 462 e-128
gb|CN129609.1|CN129609 RHOH1_36_H07.b3_A002 Acid- and alkal... 454 e-126
gb|BF420927.1|BF420927 FM1_5_A06.g1_A003 Floral-Induced Mer... 361 5e-098
gb|AW923132.1|AW923132 DG1_49_C08.g1_A002 Dark Grown 1 (DG1... 317 6e-085
gb|BF704964.1|BF704964 FM1_47_D04.g2_A003 Floral-Induced Me... 291 4e-077
gb|CD220414.1|CD220414 CCC1_67_G07.b1_A007 Callus culture/c... 212 3e-053
gb|CW182759.1|CW182759 104_598_11164251_116_36667_010 Sorgh... 178 4e-043
gb|CW190148.1|CW190148 104_611_11174347_116_36749_070 Sorgh... 178 4e-043
gb|CW216844.1|CW216844 104_649_11195330_116_37124_001 Sorgh... 178 4e-043
gb|CW216845.1|CW216845 104_649_11195330_148_37123_001 Sorgh... 123 2e-026
gb|CX611383.1|CX611383 ANR1_24_G11.b1_A002 Anaerobic roots ... 82 7e-014
gb|CW266285.1|CW266285 104_736_11232344_116_35282_032 Sorgh... 72 6e-011
gb|CW371735.1|CW371735 fsbb001f047f12k0 Sorghum methylation... 72 6e-011
gb|CW473222.1|CW473222 fsbb001f228i05k0 Sorghum methylation... 72 6e-011
gb|CF482627.1|CF482627 POL1_8_D05.b1_A002 Pollen Sorghum bi... 72 6e-011
gb|CF488326.1|CF488326 POL1_49_E06.b1_A002 Pollen Sorghum b... 72 6e-011
gb|CF489854.1|CF489854 POL1_61_B07.b1_A002 Pollen Sorghum b... 72 6e-011
gb|CF486499.1|CF486499 POL1_38_B11.b1_A002 Pollen Sorghum b... 64 2e-008
gb|CW051041.1|CW051041 104_291_10515015_114_30192 Sorghum m... 56 4e-006
gb|CW066037.1|CW066037 104_313_10523474_115_30149 Sorghum m... 56 4e-006
gb|CF484161.1|CF484161 POL1_3_C03.g1_A002 Pollen Sorghum bi... 54 1e-005
gb|CW209298.1|CW209298 104_639_11189162_148_36991_011 Sorgh... 42 0.057
>gb|BF421494.1|BF421494 FM1_8_D12.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 674
Score = 486 bits (245), Expect = e-135
Identities = 299/316 (94%), Gaps = 7/316 (2%)
Strand = Plus / Minus
Query: 273 atccccgcaagttccggccaccccttcgtggccg--aacaaacatggtctt-----cttg 325
||||||| ||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct: 512 atccccggaagttccggccaccccttcgtggccagaaacaaacaaggtcttgccgtcttg 453
Query: 326 ggctcagggattcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagc 385
|| |||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 452 ggttcagggcttcagcttcagagaggcctcgtccggcggccagaggcccggccgcagagc 393
Query: 386 agcgcgttcttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcgg 445
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agtgcgttcttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcgg 333
Query: 446 aggtagaactgctggccgaggtactgcctggcccagctctcggacctcacgttccacatc 505
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 332 aggtagaactgctggccgaggtactgcctggcccagctctccgacctcacgttccacatc 273
Query: 506 cccacgttgtccagcggcatgtagatagccgtccatgactgagggtacacctgcaatgtg 565
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 272 cccacgttgtccagcggcatgtagatagctgtccatgactgagggtacacctgcaatgtg 213
Query: 566 taccgagcaatggcgt 581
||||||||||||||||
Sbjct: 212 taccgagcaatggcgt 197
Score = 196 bits (99), Expect = 2e-048
Identities = 142/156 (91%), Gaps = 4/156 (2%)
Strand = Plus / Minus
Query: 100 aatgatgtgagcgaggaagcgaggaagcttcacatacaacaaatcgaccgggaattaatg 159
||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |
Sbjct: 673 aatgatgtgagcgaggaagcgagaaagcttcccatacaacaaatccaccgggaat----g 618
Query: 160 ttttagctacaattgctaaataatatatgagctgaacgatcatcagcgccacaaaatgga 219
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 617 ttttaactacaattgctaaataatatatgagctgattgatcatcagcgccacaaaacgga 558
Query: 220 actcagttcagcaatctgaacactccaatcatctct 255
|||| |||||||||||||||||| ||||| ||||||
Sbjct: 557 actctgttcagcaatctgaacaccccaattatctct 522
>gb|BF586098.1|BF586098 FM1_26_F08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 661
Score = 486 bits (245), Expect = e-135
Identities = 299/316 (94%), Gaps = 7/316 (2%)
Strand = Plus / Minus
Query: 273 atccccgcaagttccggccaccccttcgtggccg--aacaaacatggtctt-----cttg 325
||||||| ||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct: 541 atccccggaagttccggccaccccttcgtggccagaaacaaacaaggtcttgccgtcttg 482
Query: 326 ggctcagggattcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagc 385
|| |||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 481 ggttcagggcttcagcttcagagaggcctcgtccggcggccagaggcccggccgcagagc 422
Query: 386 agcgcgttcttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcgg 445
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agtgcgttcttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcgg 362
Query: 446 aggtagaactgctggccgaggtactgcctggcccagctctcggacctcacgttccacatc 505
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 361 aggtagaactgctggccgaggtactgcctggcccagctctccgacctcacgttccacatc 302
Query: 506 cccacgttgtccagcggcatgtagatagccgtccatgactgagggtacacctgcaatgtg 565
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 301 cccacgttgtccagcggcatgtagatagctgtccatgactgagggtacacctgcaatgtg 242
Query: 566 taccgagcaatggcgt 581
||||||||||||||||
Sbjct: 241 taccgagcaatggcgt 226
Score = 143 bits (72), Expect = 2e-032
Identities = 93/100 (93%)
Strand = Plus / Minus
Query: 156 aatgttttagctacaattgctaaataatatatgagctgaacgatcatcagcgccacaaaa 215
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 650 aatgttttaactacaattgctaaataatatatgagctgattgatcatcagcgccacaaaa 591
Query: 216 tggaactcagttcagcaatctgaacactccaatcatctct 255
||||||| |||||||||||||||||| ||||| ||||||
Sbjct: 590 cggaactctgttcagcaatctgaacaccccaattatctct 551
>gb|BF586907.1|BF586907 FM1_31_H11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 646
Score = 486 bits (245), Expect = e-135
Identities = 299/316 (94%), Gaps = 7/316 (2%)
Strand = Plus / Minus
Query: 273 atccccgcaagttccggccaccccttcgtggccg--aacaaacatggtctt-----cttg 325
||||||| ||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct: 484 atccccggaagttccggccaccccttcgtggccagaaacaaacaaggtcttgccgtcttg 425
Query: 326 ggctcagggattcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagc 385
|| |||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 424 ggttcagggcttcagcttcagagaggcctcgtccggcggccagaggcccggccgcagagc 365
Query: 386 agcgcgttcttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcgg 445
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agtgcgttcttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcgg 305
Query: 446 aggtagaactgctggccgaggtactgcctggcccagctctcggacctcacgttccacatc 505
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 304 aggtagaactgctggccgaggtactgcctggcccagctctccgacctcacgttccacatc 245
Query: 506 cccacgttgtccagcggcatgtagatagccgtccatgactgagggtacacctgcaatgtg 565
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 244 cccacgttgtccagcggcatgtagatagctgtccatgactgagggtacacctgcaatgtg 185
Query: 566 taccgagcaatggcgt 581
||||||||||||||||
Sbjct: 184 taccgagcaatggcgt 169
Score = 196 bits (99), Expect = 2e-048
Identities = 142/156 (91%), Gaps = 4/156 (2%)
Strand = Plus / Minus
Query: 100 aatgatgtgagcgaggaagcgaggaagcttcacatacaacaaatcgaccgggaattaatg 159
||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |
Sbjct: 645 aatgatgtgagcgaggaagcgagaaagcttcccatacaacaaatccaccgggaat----g 590
Query: 160 ttttagctacaattgctaaataatatatgagctgaacgatcatcagcgccacaaaatgga 219
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 589 ttttaactacaattgctaaataatatatgagctgattgatcatcagcgccacaaaacgga 530
Query: 220 actcagttcagcaatctgaacactccaatcatctct 255
|||| |||||||||||||||||| ||||| ||||||
Sbjct: 529 actctgttcagcaatctgaacaccccaattatctct 494
>gb|BG050704.1|BG050704 FM1_71_H08.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 501
Score = 486 bits (245), Expect = e-135
Identities = 299/316 (94%), Gaps = 7/316 (2%)
Strand = Plus / Minus
Query: 273 atccccgcaagttccggccaccccttcgtggccg--aacaaacatggtctt-----cttg 325
||||||| ||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct: 341 atccccggaagttccggccaccccttcgtggccagaaacaaacaaggtcttgccgtcttg 282
Query: 326 ggctcagggattcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagc 385
|| |||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 281 ggttcagggcttcagcttcagagaggcctcgtccggcggccagaggcccggccgcagagc 222
Query: 386 agcgcgttcttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcgg 445
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 agtgcgttcttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcgg 162
Query: 446 aggtagaactgctggccgaggtactgcctggcccagctctcggacctcacgttccacatc 505
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 161 aggtagaactgctggccgaggtactgcctggcccagctctccgacctcacgttccacatc 102
Query: 506 cccacgttgtccagcggcatgtagatagccgtccatgactgagggtacacctgcaatgtg 565
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 101 cccacgttgtccagcggcatgtagatagctgtccatgactgagggtacacctgcaatgtg 42
Query: 566 taccgagcaatggcgt 581
||||||||||||||||
Sbjct: 41 taccgagcaatggcgt 26
Score = 194 bits (98), Expect = 6e-048
Identities = 141/155 (90%), Gaps = 4/155 (2%)
Strand = Plus / Minus
Query: 101 atgatgtgagcgaggaagcgaggaagcttcacatacaacaaatcgaccgggaattaatgt 160
|||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||
Sbjct: 501 atgatgtgagcgaggaagcgagaaagcttcccatacaacaaatccaccgggaat----gt 446
Query: 161 tttagctacaattgctaaataatatatgagctgaacgatcatcagcgccacaaaatggaa 220
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 445 tttaactacaattgctaaataatatatgagctgattgatcatcagcgccacaaaacggaa 386
Query: 221 ctcagttcagcaatctgaacactccaatcatctct 255
||| |||||||||||||||||| ||||| ||||||
Sbjct: 385 ctctgttcagcaatctgaacaccccaattatctct 351
>gb|BG103595.1|BG103595 RHIZ2_38_E03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 505
Score = 486 bits (245), Expect = e-135
Identities = 299/316 (94%), Gaps = 7/316 (2%)
Strand = Plus / Minus
Query: 273 atccccgcaagttccggccaccccttcgtggccg--aacaaacatggtctt-----cttg 325
||||||| ||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct: 343 atccccggaagttccggccaccccttcgtggccagaaacaaacaaggtcttgccgtcttg 284
Query: 326 ggctcagggattcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagc 385
|| |||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 283 ggttcagggcttcagcttcagagaggcctcgtccggcggccagaggcccggccgcagagc 224
Query: 386 agcgcgttcttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcgg 445
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 agtgcgttcttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcgg 164
Query: 446 aggtagaactgctggccgaggtactgcctggcccagctctcggacctcacgttccacatc 505
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 163 aggtagaactgctggccgaggtactgcctggcccagctctccgacctcacgttccacatc 104
Query: 506 cccacgttgtccagcggcatgtagatagccgtccatgactgagggtacacctgcaatgtg 565
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 103 cccacgttgtccagcggcatgtagatagctgtccatgactgagggtacacctgcaatgtg 44
Query: 566 taccgagcaatggcgt 581
||||||||||||||||
Sbjct: 43 taccgagcaatggcgt 28
Score = 196 bits (99), Expect = 2e-048
Identities = 142/156 (91%), Gaps = 4/156 (2%)
Strand = Plus / Minus
Query: 100 aatgatgtgagcgaggaagcgaggaagcttcacatacaacaaatcgaccgggaattaatg 159
||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |
Sbjct: 504 aatgatgtgagcgaggaagcgagaaagcttcccatacaacaaatccaccgggaat----g 449
Query: 160 ttttagctacaattgctaaataatatatgagctgaacgatcatcagcgccacaaaatgga 219
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 448 ttttaactacaattgctaaataatatatgagctgattgatcatcagcgccacaaaacgga 389
Query: 220 actcagttcagcaatctgaacactccaatcatctct 255
|||| |||||||||||||||||| ||||| ||||||
Sbjct: 388 actctgttcagcaatctgaacaccccaattatctct 353
>gb|BG239815.1|BG239815 OV1_29_D04.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 470
Score = 462 bits (233), Expect = e-128
Identities = 290/308 (94%), Gaps = 7/308 (2%)
Strand = Plus / Minus
Query: 281 aagttccggccaccccttcgtggccg--aacaaacatggtctt-----cttgggctcagg 333
||||||||||||||||||||| ||| |||||||| |||||| |||||| |||||
Sbjct: 309 aagttccggccaccccttcgttgccagaaacaaacaaggtcttgccgtcttgggttcagg 250
Query: 334 gattcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgtt 393
| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 249 gcttcagcttcagagaggcctcgtccggcggccagaggcccggccgcagagcagtgcgtt 190
Query: 394 cttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaa 453
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 189 cttggggatcgggttctcgtcccgccacgagttcgctggcgagtagacgcggaggtagaa 130
Query: 454 ctgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgtt 513
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 129 ctgctggccgaggtactgcctggcccagctctccgacctcacgttccacatccccacgtt 70
Query: 514 gtccagcggcatgtagatagccgtccatgactgagggtacacctgcaatgtgtaccgagc 573
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gtccagcggcatgtagatagctgtccatgactgagggtacacctgcaatgtgtaccgagc 10
Query: 574 aatggcgt 581
||||||||
Sbjct: 9 aatggcgt 2
Score = 167 bits (84), Expect = 1e-039
Identities = 130/145 (89%), Gaps = 4/145 (2%)
Strand = Plus / Minus
Query: 111 cgaggaagcgaggaagcttcacatacaacaaatcgaccgggaattaatgttttagctaca 170
|||||||||||| ||||||| ||||||||||||| ||||||||| |||||| |||||
Sbjct: 467 cgaggaagcgagaaagcttcccatacaacaaatccaccgggaat----gttttaactaca 412
Query: 171 attgctaaataatatatgagctgaacgatcatcagcgccacaaaatggaactcagttcag 230
||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||
Sbjct: 411 attgctaaataatatatgagctggttgatcatcagcgccacaaaacggaactctgttcag 352
Query: 231 caatctgaacactccaatcatctct 255
|||||||||||| ||||| ||||||
Sbjct: 351 caatctgaacaccccaattatctct 327
>gb|BG465293.1|BG465293 EM1_74_D12.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 462 bits (233), Expect = e-128
Identities = 290/308 (94%), Gaps = 7/308 (2%)
Strand = Plus / Minus
Query: 281 aagttccggccaccccttcgtggccg--aacaaacatggtctt-----cttgggctcagg 333
||||||||||||||||||||| ||| |||||||| |||||| |||||| |||||
Sbjct: 438 aagttccggccaccccttcgttgccagaaacaaacaaggtcttgccgtcttgggttcagg 379
Query: 334 gattcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgtt 393
| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 378 gcttcagcttcagagaggcctcgtccggcggccagaggcccggccgcagagcagtgcgtt 319
Query: 394 cttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaa 453
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 318 cttggggatcgggttctcgtcccgccacgagttcgctggcgagtagacgcggaggtagaa 259
Query: 454 ctgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgtt 513
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 258 ctgctggccgaggtactgcctggcccagctctccgacctcacgttccacatccccacgtt 199
Query: 514 gtccagcggcatgtagatagccgtccatgactgagggtacacctgcaatgtgtaccgagc 573
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gtccagcggcatgtagatagctgtccatgactgagggtacacctgcaatgtgtaccgagc 139
Query: 574 aatggcgt 581
||||||||
Sbjct: 138 aatggcgt 131
Score = 190 bits (96), Expect = 1e-046
Identities = 142/157 (90%), Gaps = 4/157 (2%)
Strand = Plus / Minus
Query: 99 caatgatgtgagcgaggaagcgaggaagcttcacatacaacaaatcgaccgggaattaat 158
|||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||
Sbjct: 608 caatgatgtgagcgaggaagcgagaaagcttcccatacaacaaatccaccgggaat---- 553
Query: 159 gttttagctacaattgctaaataatatatgagctgaacgatcatcagcgccacaaaatgg 218
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 552 gttttaactacaattgctaaataatatatgagctggttgatcatcagcgccacaaaacgg 493
Query: 219 aactcagttcagcaatctgaacactccaatcatctct 255
||||| |||||||||||||||||| ||||| ||||||
Sbjct: 492 aactctgttcagcaatctgaacaccccaattatctct 456
>gb|CX606430.1|CX606430 ANR1_3_A12.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_3_A12_A002 3', mRNA sequence
Length = 623
Score = 462 bits (233), Expect = e-128
Identities = 290/308 (94%), Gaps = 7/308 (2%)
Strand = Plus / Minus
Query: 281 aagttccggccaccccttcgtggccg--aacaaacatggtctt-----cttgggctcagg 333
||||||||||||||||||||| ||| |||||||| |||||| |||||| |||||
Sbjct: 425 aagttccggccaccccttcgttgccagaaacaaacaaggtcttgccgtcttgggttcagg 366
Query: 334 gattcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgtt 393
| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 365 gcttcagcttcagagaggcctcgtccggcggccagaggcccggccgcagagcagtgcgtt 306
Query: 394 cttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaa 453
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 305 cttggggatcgggttctcgtcccgccacgagttcgctggcgagtagacgcggaggtagaa 246
Query: 454 ctgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgtt 513
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 245 ctgctggccgaggtactgcctggcccagctctccgacctcacgttccacatccccacgtt 186
Query: 514 gtccagcggcatgtagatagccgtccatgactgagggtacacctgcaatgtgtaccgagc 573
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gtccagcggcatgtagatagctgtccatgactgagggtacacctgcaatgtgtaccgagc 126
Query: 574 aatggcgt 581
||||||||
Sbjct: 125 aatggcgt 118
Score = 212 bits (107), Expect = 3e-053
Identities = 153/168 (91%), Gaps = 4/168 (2%)
Strand = Plus / Minus
Query: 88 attatcatcatcaatgatgtgagcgaggaagcgaggaagcttcacatacaacaaatcgac 147
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||
Sbjct: 606 attatcatcatcaatgatgtgagcgaggaagcgagaaagcttcccatacaacaaatccac 547
Query: 148 cgggaattaatgttttagctacaattgctaaataatatatgagctgaacgatcatcagcg 207
||||||| |||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 546 cgggaat----gttttaactacaattgctaaataatatatgagctggttgatcatcagcg 491
Query: 208 ccacaaaatggaactcagttcagcaatctgaacactccaatcatctct 255
|||||||| ||||||| |||||||||||||||||| ||||| ||||||
Sbjct: 490 ccacaaaacggaactctgttcagcaatctgaacaccccaattatctct 443
>gb|CN129609.1|CN129609 RHOH1_36_H07.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_36_H07_A002 3', mRNA sequence
Length = 742
Score = 454 bits (229), Expect = e-126
Identities = 289/308 (93%), Gaps = 7/308 (2%)
Strand = Plus / Minus
Query: 281 aagttccggccaccccttcgtggccg--aacaaacatggtctt-----cttgggctcagg 333
||||||||||||||||||||| ||| |||||||| |||||| |||| | |||||
Sbjct: 549 aagttccggccaccccttcgttgccagaaacaaacaaggtcttgccgtcttgagttcagg 490
Query: 334 gattcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgtt 393
| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 489 gcttcagcttcagagaggcctcgtccggcggccagaggcccggccgcagagcagtgcgtt 430
Query: 394 cttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaa 453
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 429 cttggggatcgggttctcgtcccgccacgagttcgctggcgagtagacgcggaggtagaa 370
Query: 454 ctgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgtt 513
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 369 ctgctggccgaggtactgcctggcccagctctccgacctcacgttccacatccccacgtt 310
Query: 514 gtccagcggcatgtagatagccgtccatgactgagggtacacctgcaatgtgtaccgagc 573
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gtccagcggcatgtagatagctgtccatgactgagggtacacctgcaatgtgtaccgagc 250
Query: 574 aatggcgt 581
||||||||
Sbjct: 249 aatggcgt 242
Score = 212 bits (107), Expect = 3e-053
Identities = 153/168 (91%), Gaps = 4/168 (2%)
Strand = Plus / Minus
Query: 88 attatcatcatcaatgatgtgagcgaggaagcgaggaagcttcacatacaacaaatcgac 147
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||
Sbjct: 730 attatcatcatcaatgatgtgagcgaggaagcgagaaagcttcccatacaacaaatccac 671
Query: 148 cgggaattaatgttttagctacaattgctaaataatatatgagctgaacgatcatcagcg 207
||||||| |||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 670 cgggaat----gttttaactacaattgctaaataatatatgagctggttgatcatcagcg 615
Query: 208 ccacaaaatggaactcagttcagcaatctgaacactccaatcatctct 255
|||||||| ||||||| |||||||||||||||||| ||||| ||||||
Sbjct: 614 ccacaaaacggaactctgttcagcaatctgaacaccccaattatctct 567
>gb|BF420927.1|BF420927 FM1_5_A06.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 339
Score = 361 bits (182), Expect = 5e-098
Identities = 236/253 (93%), Gaps = 7/253 (2%)
Strand = Plus / Minus
Query: 273 atccccgcaagttccggccaccccttcgtggccg--aacaaacatggtctt-----cttg 325
||||||| ||||||||||||||||||||||||| |||||||| |||||| ||||
Sbjct: 256 atccccggaagttccggccaccccttcgtggccagaaacaaacaaggtcttgccgtcttg 197
Query: 326 ggctcagggattcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagc 385
|| |||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 196 ggttcagggcttcagcttcagagaggcctcgtccggcggccagaggcccggccgcagagc 137
Query: 386 agcgcgttcttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcgg 445
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 agtgcgttcttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcgg 77
Query: 446 aggtagaactgctggccgaggtactgcctggcccagctctcggacctcacgttccacatc 505
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 76 aggtagaactgctggccgaggtactgcctggcccagctctccgacctcacgttccacatg 17
Query: 506 cccacgttgtcca 518
|||||||||||||
Sbjct: 16 cccacgttgtcca 4
Score = 93.7 bits (47), Expect = 2e-017
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 185 tatgagctgaacgatcatcagcgccacaaaatggaactcagttcagcaatctgaacactc 244
|||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||| |
Sbjct: 336 tatgagctgattgatcatcagcgccacaaaacggaactctgttcagcaatctgaacaccc 277
Query: 245 caatcatctct 255
|||| ||||||
Sbjct: 276 caattatctct 266
>gb|AW923132.1|AW923132 DG1_49_C08.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 408
Score = 317 bits (160), Expect = 6e-085
Identities = 214/231 (92%), Gaps = 7/231 (3%)
Strand = Plus / Minus
Query: 281 aagttccggccaccccttcgtggccg--aacaaacatggtctt-----cttgggctcagg 333
||||||||||||||||||||| ||| |||||||| |||||| |||||| |||||
Sbjct: 232 aagttccggccaccccttcgttgccagaaacaaacaaggtcttgccgtcttgggttcagg 173
Query: 334 gattcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgtt 393
| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct: 172 gcttcagcttcagagaggcctcgtccggcggccagaggcccggccgcagagcagtgcgtt 113
Query: 394 cttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaa 453
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 112 cttggggatcgggttctcgtcccgccacgagttcgctggcgagtagacgcggaggtagaa 53
Query: 454 ctgctggccgaggtactgcctggcccagctctcggacctcacgttccacat 504
||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 52 ctgctggccgaggtactgcctggcccagctctccgacctcacgttccacat 2
Score = 184 bits (93), Expect = 6e-045
Identities = 146/162 (90%), Gaps = 5/162 (3%)
Strand = Plus / Minus
Query: 95 tcatcaatgatgtgagcgaggaagcgaggaagcttcacatacaacaaatcgaccgggaat 154
|||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||
Sbjct: 407 tcatcaatgatgtgagcgaggaagcgagaaagcttcccatacaacaaatccaccggg--- 351
Query: 155 taatgttttagctacaattgctaaataatatatgag-ctgaacgatcatcagcgccacaa 213
||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 350 -aatgttttaactacaattgctaaataatatatgagcctggttgatcatcagcgccacaa 292
Query: 214 aatggaactcagttcagcaatctgaacactccaatcatctct 255
|| ||||||| |||||||||||||||||| ||||| ||||||
Sbjct: 291 aacggaactctgttcagcaatctgaacaccccaattatctct 250
>gb|BF704964.1|BF704964 FM1_47_D04.g2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 372
Score = 291 bits (147), Expect = 4e-077
Identities = 201/218 (92%), Gaps = 7/218 (3%)
Strand = Plus / Minus
Query: 273 atccccgcaagttccggccaccccttcgtggccg--aacaaacatggtctt-----cttg 325
||||||| ||||||||||||||||||||||||| |||||||| || ||| ||||
Sbjct: 219 atccccggaagttccggccaccccttcgtggccagaaacaaacaagggcttgccgtcttg 160
Query: 326 ggctcagggattcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagc 385
|| ||| || ||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 159 ggttcaaggcttcagcttcagagaggcctcgtccggcggccagaggcccggccgcagagc 100
Query: 386 agcgcgttcttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcgg 445
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 agtgcgttcttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcgg 40
Query: 446 aggtagaactgctggccgaggtactgcctggcccagct 483
||||||||||||||||||||||||||||||||||||||
Sbjct: 39 aggtagaactgctggccgaggtactgcctggcccagct 2
Score = 180 bits (91), Expect = 1e-043
Identities = 134/148 (90%), Gaps = 4/148 (2%)
Strand = Plus / Minus
Query: 108 gagcgaggaagcgaggaagcttcacatacaacaaatcgaccgggaattaatgttttagct 167
||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||| ||
Sbjct: 372 gagcgaggaagcgagaaagcttcccatacaacaaatccaccgggaat----gttttaact 317
Query: 168 acaattgctaaataatatatgagctgaacgatcatcagcgccacaaaatggaactcagtt 227
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||
Sbjct: 316 acaattgctaaataatatatgagctgattgatcatcagcgccacaaaacggaactctgtt 257
Query: 228 cagcaatctgaacactccaatcatctct 255
||||||||||||||| ||||| ||||||
Sbjct: 256 cagcaatctgaacaccccaattatctct 229
>gb|CD220414.1|CD220414 CCC1_67_G07.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_67_G07_A007 3', mRNA sequence
Length = 346
Score = 212 bits (107), Expect = 3e-053
Identities = 153/168 (91%), Gaps = 4/168 (2%)
Strand = Plus / Minus
Query: 88 attatcatcatcaatgatgtgagcgaggaagcgaggaagcttcacatacaacaaatcgac 147
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||
Sbjct: 334 attatcatcatcaatgatgtgagcgaggaagcgagaaagcttcccatacaacaaatccac 275
Query: 148 cgggaattaatgttttagctacaattgctaaataatatatgagctgaacgatcatcagcg 207
||||||| |||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 274 cgggaat----gttttaactacaattgctaaataatatatgagctggttgatcatcagcg 219
Query: 208 ccacaaaatggaactcagttcagcaatctgaacactccaatcatctct 255
|||||||| ||||||| |||||||||||||||||| ||||| ||||||
Sbjct: 218 ccacaaaacggaactctgttcagcaatctgaacaccccaattatctct 171
Score = 155 bits (78), Expect = 5e-036
Identities = 135/153 (88%), Gaps = 7/153 (4%)
Strand = Plus / Minus
Query: 281 aagttccggccaccccttcgtggccg--aacaaacatggtctt-----cttgggctcagg 333
||||||||||||||||||||| ||| |||||||| |||||| |||||| |||||
Sbjct: 153 aagttccggccaccccttcgttgccagaaacaaacaaggtcttgccgtcttgggttcagg 94
Query: 334 gattcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgtt 393
| ||||||||||||||||||| |||||||| ||||||||||||||||| |||| |||||
Sbjct: 93 gcttcagcttcagagaggcctcgtccggcggccagaggcccggccgcaaagcacagcgtt 34
Query: 394 cttggggatcgggttctcgtcccgccacgagtt 426
||||||||||||||||||| |||||||||||||
Sbjct: 33 cttggggatcgggttctcgacccgccacgagtt 1
>gb|CW182759.1|CW182759 104_598_11164251_116_36667_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11164251, DNA
sequence
Length = 687
Score = 178 bits (90), Expect = 4e-043
Identities = 168/194 (86%)
Strand = Plus / Plus
Query: 350 ggcctggtccggcgtccagaggcccggccgcagagcagcgcgttcttggggatcgggttc 409
|||||||||||||| || | |||||||||||| || ||||||||||||||||||||||
Sbjct: 39 ggcctggtccggcgaccggcggcccggccgcacaggagcgcgttcttggggatcgggtat 98
Query: 410 tcgtcccgccacgagttcgccggcgagtagacgcggaggtagaactgctggccgaggtac 469
||||| ||| |||| ||| ||||| |||||||||||||||||||||| || ||||||
Sbjct: 99 tcgtcgcgcaacgacgtcgacggcgtccagacgcggaggtagaactgctgccccaggtac 158
Query: 470 tgcctggcccagctctcggacctcacgttccacatccccacgttgtccagcggcatgtag 529
|||||||||||| |||| |||| || |||||||| ||||||||||| || |||||||||
Sbjct: 159 tgcctggcccagttctccgaccggacattccacattcccacgttgtcaaggggcatgtag 218
Query: 530 atagccgtccatga 543
|| |||||||||||
Sbjct: 219 atcgccgtccatga 232
>gb|CW190148.1|CW190148 104_611_11174347_116_36749_070 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11174347, DNA
sequence
Length = 688
Score = 178 bits (90), Expect = 4e-043
Identities = 168/194 (86%)
Strand = Plus / Minus
Query: 350 ggcctggtccggcgtccagaggcccggccgcagagcagcgcgttcttggggatcgggttc 409
|||||||||||||| || | |||||||||||| || ||||||||||||||||||||||
Sbjct: 391 ggcctggtccggcgaccggcggcccggccgcacaggagcgcgttcttggggatcgggtat 332
Query: 410 tcgtcccgccacgagttcgccggcgagtagacgcggaggtagaactgctggccgaggtac 469
||||| ||| |||| ||| ||||| |||||||||||||||||||||| || ||||||
Sbjct: 331 tcgtcgcgcaacgacgtcgacggcgtccagacgcggaggtagaactgctgccccaggtac 272
Query: 470 tgcctggcccagctctcggacctcacgttccacatccccacgttgtccagcggcatgtag 529
|||||||||||| |||| |||| || |||||||| ||||||||||| || |||||||||
Sbjct: 271 tgcctggcccagttctccgaccggacattccacattcccacgttgtcaaggggcatgtag 212
Query: 530 atagccgtccatga 543
|| |||||||||||
Sbjct: 211 atcgccgtccatga 198
>gb|CW216844.1|CW216844 104_649_11195330_116_37124_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195330, DNA
sequence
Length = 706
Score = 178 bits (90), Expect = 4e-043
Identities = 168/194 (86%)
Strand = Plus / Plus
Query: 350 ggcctggtccggcgtccagaggcccggccgcagagcagcgcgttcttggggatcgggttc 409
|||||||||||||| || | |||||||||||| || ||||||||||||||||||||||
Sbjct: 264 ggcctggtccggcgaccggcggcccggccgcacaggagcgcgttcttggggatcgggtat 323
Query: 410 tcgtcccgccacgagttcgccggcgagtagacgcggaggtagaactgctggccgaggtac 469
||||| ||| |||| ||| ||||| |||||||||||||||||||||| || ||||||
Sbjct: 324 tcgtcgcgcaacgacgtcgacggcgtccagacgcggaggtagaactgctgccccaggtac 383
Query: 470 tgcctggcccagctctcggacctcacgttccacatccccacgttgtccagcggcatgtag 529
|||||||||||| |||| |||| || |||||||| ||||||||||| || |||||||||
Sbjct: 384 tgcctggcccagttctccgaccggacattccacattcccacgttgtcaaggggcatgtag 443
Query: 530 atagccgtccatga 543
|| |||||||||||
Sbjct: 444 atcgccgtccatga 457
>gb|CW216845.1|CW216845 104_649_11195330_148_37123_001 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195330, DNA
sequence
Length = 667
Score = 123 bits (62), Expect = 2e-026
Identities = 95/106 (89%)
Strand = Plus / Minus
Query: 438 agacgcggaggtagaactgctggccgaggtactgcctggcccagctctcggacctcacgt 497
|||||||||||||||||||||| || |||||||||||||||||| |||| |||| || |
Sbjct: 642 agacgcggaggtagaactgctgccccaggtactgcctggcccagttctccgaccggacat 583
Query: 498 tccacatccccacgttgtccagcggcatgtagatagccgtccatga 543
||||||| ||||||||||| || ||||||||||| |||||||||||
Sbjct: 582 tccacattcccacgttgtcaaggggcatgtagatcgccgtccatga 537
>gb|CX611383.1|CX611383 ANR1_24_G11.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_24_G11_A002 3', mRNA sequence
Length = 725
Score = 81.8 bits (41), Expect = 7e-014
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 445 gaggtagaactgctggccgaggtactgcctggcccagctctcggacctcacgttccacat 504
|||||||| |||||||||||||||||||| | ||||| || | ||||||| |||||||||
Sbjct: 329 gaggtagagctgctggccgaggtactgccggtcccagatcgccgacctcaggttccacat 270
Query: 505 ccccacgttgtccagcg 521
|||| |||||||||||
Sbjct: 269 cccctggttgtccagcg 253
>gb|CW266285.1|CW266285 104_736_11232344_116_35282_032 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232344, DNA
sequence
Length = 649
Score = 71.9 bits (36), Expect = 6e-011
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 430 cggcgagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctctcgga 489
||||| ||| || |||||||||||||||||||| |||||| | ||||| ||| ||
Sbjct: 247 cggcgtgtacacccggaggtagaactgctggcccaggtacctgcgcgcccacacctccga 188
Query: 490 cctcacgttccacatccccacgttgtccagcg 521
||||| ||||||||||||||||||||||||||
Sbjct: 187 cctcatgttccacatccccacgttgtccagcg 156
>gb|CW371735.1|CW371735 fsbb001f047f12k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f047f12, DNA
sequence
Length = 645
Score = 71.9 bits (36), Expect = 6e-011
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 430 cggcgagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctctcgga 489
||||| ||| || |||||||||||||||||||| |||||| | ||||| ||| ||
Sbjct: 315 cggcgtgtacacccggaggtagaactgctggcccaggtacctgcgcgcccacacctccga 374
Query: 490 cctcacgttccacatccccacgttgtccagcg 521
||||| ||||||||||||||||||||||||||
Sbjct: 375 cctcatgttccacatccccacgttgtccagcg 406
>gb|CW473222.1|CW473222 fsbb001f228i05k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f228i05, DNA
sequence
Length = 620
Score = 71.9 bits (36), Expect = 6e-011
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 430 cggcgagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctctcgga 489
||||| ||| || |||||||||||||||||||| |||||| | ||||| ||| ||
Sbjct: 276 cggcgtgtacacccggaggtagaactgctggcccaggtacctgcgcgcccacacctccga 335
Query: 490 cctcacgttccacatccccacgttgtccagcg 521
||||| ||||||||||||||||||||||||||
Sbjct: 336 cctcatgttccacatccccacgttgtccagcg 367
>gb|CF482627.1|CF482627 POL1_8_D05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_8_D05_A002 3', mRNA sequence
Length = 524
Score = 71.9 bits (36), Expect = 6e-011
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 430 cggcgagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctctcgga 489
||||| ||| || |||||||||||||||||||| |||||| | ||||| ||| ||
Sbjct: 208 cggcgtgtacacccggaggtagaactgctggcccaggtacctgcgcgcccacacctccga 149
Query: 490 cctcacgttccacatccccacgttgtccagcg 521
||||| ||||||||||||||||||||||||||
Sbjct: 148 cctcatgttccacatccccacgttgtccagcg 117
>gb|CF488326.1|CF488326 POL1_49_E06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_49_E06_A002 3', mRNA sequence
Length = 521
Score = 71.9 bits (36), Expect = 6e-011
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 430 cggcgagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctctcgga 489
||||| ||| || |||||||||||||||||||| |||||| | ||||| ||| ||
Sbjct: 208 cggcgtgtacacccggaggtagaactgctggcccaggtacctgcgcgcccacacctccga 149
Query: 490 cctcacgttccacatccccacgttgtccagcg 521
||||| ||||||||||||||||||||||||||
Sbjct: 148 cctcatgttccacatccccacgttgtccagcg 117
>gb|CF489854.1|CF489854 POL1_61_B07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_61_B07_A002 3', mRNA sequence
Length = 523
Score = 71.9 bits (36), Expect = 6e-011
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 430 cggcgagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctctcgga 489
||||| ||| || |||||||||||||||||||| |||||| | ||||| ||| ||
Sbjct: 210 cggcgtgtacacccggaggtagaactgctggcccaggtacctgcgcgcccacacctccga 151
Query: 490 cctcacgttccacatccccacgttgtccagcg 521
||||| ||||||||||||||||||||||||||
Sbjct: 150 cctcatgttccacatccccacgttgtccagcg 119
>gb|CF486499.1|CF486499 POL1_38_B11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_B11_A002 3', mRNA sequence
Length = 523
Score = 63.9 bits (32), Expect = 2e-008
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 430 cggcgagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctctcgga 489
||||| ||| || |||||||| ||||||||||| |||||| | ||||| ||| ||
Sbjct: 206 cggcgtgtacacccggaggtaaaactgctggcccaggtacctgcgcgcccacacctccga 147
Query: 490 cctcacgttccacatccccacgttgtccagcg 521
||||| ||||||||||||||||||||||||||
Sbjct: 146 cctcatgttccacatccccacgttgtccagcg 115
>gb|CW051041.1|CW051041 104_291_10515015_114_30192 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10515015, DNA
sequence
Length = 291
Score = 56.0 bits (28), Expect = 4e-006
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 554 acctgcaatgtgtaccgagcaatggcgt 581
||||||||||||||||||||||||||||
Sbjct: 217 acctgcaatgtgtaccgagcaatggcgt 190
>gb|CW066037.1|CW066037 104_313_10523474_115_30149 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523474, DNA
sequence
Length = 586
Score = 56.0 bits (28), Expect = 4e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 554 acctgcaatgtgtaccgagcaatggcgt 581
||||||||||||||||||||||||||||
Sbjct: 148 acctgcaatgtgtaccgagcaatggcgt 175
>gb|CF484161.1|CF484161 POL1_3_C03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_3_C03_A002 5', mRNA sequence
Length = 579
Score = 54.0 bits (27), Expect = 1e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 430 cggcgagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctctcgga 489
||||| ||| || |||||||||||||||||||| |||||| | ||||| ||| ||
Sbjct: 335 cggcgtgtacacccggaggtagaactgctggcccaggtacctgcgcgcccacacctccga 394
Query: 490 cctcacgttccacatccccacgt 512
||||| |||||||||||||||||
Sbjct: 395 cctcatgttccacatccccacgt 417
>gb|CW209298.1|CW209298 104_639_11189162_148_36991_011 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11189162, DNA
sequence
Length = 750
Score = 42.1 bits (21), Expect = 0.057
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 511 gttgtccagcggcatgtagatagccgtccatga 543
|||||| || ||||||||||| |||||||||||
Sbjct: 1 gttgtcaaggggcatgtagatcgccgtccatga 33
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 152,664
Number of Sequences: 832831
Number of extensions: 152664
Number of successful extensions: 40657
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40565
Number of HSP's gapped (non-prelim): 80
length of query: 591
length of database: 491,359,669
effective HSP length: 19
effective length of query: 572
effective length of database: 475,535,880
effective search space: 272006523360
effective search space used: 272006523360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)