BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2590996.2.1
(1086 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW334674.1|CW334674 104_833_11482623_148_36071_060 Sorgh... 573 e-161
gb|CL175428.1|CL175428 104_381_10892447_116_31765_047 Sorgh... 569 e-160
gb|CN143621.1|CN143621 WOUND1_17_H10.b1_A002 Wounded leaves... 474 e-132
gb|BE358121.1|BE358121 DG1_24_C10.g1_A002 Dark Grown 1 (DG1... 456 e-126
gb|BE600358.1|BE600358 PI1_95_D08.g1_A002 Pathogen induced ... 456 e-126
gb|CX619210.1|CX619210 GABR1_44_D05.b1_A002 GA- or brassino... 456 e-126
gb|BE364954.1|BE364954 PI1_22_F04.b1_A002 Pathogen induced ... 446 e-123
gb|CW334673.1|CW334673 104_833_11482623_116_36070_060 Sorgh... 440 e-121
gb|CD236389.1|CD236389 SS1_34_G08.b1_A012 Salt-stressed see... 440 e-121
gb|CF484452.1|CF484452 POL1_25_H12.b1_A002 Pollen Sorghum b... 400 e-109
gb|CD212879.1|CD212879 HS1_17_F07.b1_A012 Heat-shocked seed... 385 e-105
gb|CW049083.1|CW049083 104_288_10513818_115_30199 Sorghum m... 379 e-103
gb|CW445368.1|CW445368 fsbb001f170h16f0 Sorghum methylation... 305 5e-081
gb|CW023812.1|CW023812 104_163_10432660_5_30009 Sorghum met... 299 3e-079
gb|BE364955.1|BE364955 PI1_22_F03.b1_A002 Pathogen induced ... 293 2e-077
gb|CD234388.1|CD234388 SS1_27_H07.b1_A012 Salt-stressed see... 252 6e-065
gb|CL175429.1|CL175429 104_381_10892447_148_31764_047 Sorgh... 250 2e-064
gb|CD225085.1|CD225085 CCC1_38_G05.b1_A007 Callus culture/c... 170 2e-040
gb|CL188255.1|CL188255 104_404_10901465_116_32448_071 Sorgh... 167 3e-039
gb|CW097799.1|CW097799 104_464_11002660_148_34365_014 Sorgh... 167 3e-039
gb|CW434797.1|CW434797 fsbb001f150k16k0 Sorghum methylation... 167 3e-039
gb|CX613268.1|CX613268 GABR1_7_E10.b1_A002 GA- or brassinol... 167 3e-039
gb|CW434530.1|CW434530 fsbb001f150e10k0 Sorghum methylation... 155 1e-035
gb|BE359001.1|BE359001 DG1_38_F04.b1_A002 Dark Grown 1 (DG1... 139 6e-031
gb|BZ349842.1|BZ349842 hr46d12.g1 WGS-SbicolorF (JM107 adap... 137 2e-030
gb|CW264348.1|CW264348 104_733_11231241_148_35249_045 Sorgh... 137 2e-030
gb|CW495508.1|CW495508 fsbb001f287e23k0 Sorghum methylation... 137 2e-030
gb|CB926634.1|CB926634 ABA1_3_D04.b1_A012 Abscisic acid-tre... 137 2e-030
gb|CL149321.1|CL149321 104_330_10777748_114_31353_068 Sorgh... 135 9e-030
gb|CW355391.1|CW355391 fsbb001f020a02f0 Sorghum methylation... 131 1e-028
gb|CW467955.1|CW467955 fsbb001f219n18f0 Sorghum methylation... 131 1e-028
gb|CX618020.1|CX618020 GABR1_37_F05.b1_A002 GA- or brassino... 131 1e-028
gb|CW238816.1|CW238816 104_695_11216936_148_37417_018 Sorgh... 127 2e-027
gb|CW139338.1|CW139338 104_529_11135186_148_34909_007 Sorgh... 121 1e-025
gb|CW372422.1|CW372422 fsbb001f048f02k0 Sorghum methylation... 121 1e-025
gb|CW496448.1|CW496448 fsbb001f288l08k0 Sorghum methylation... 121 1e-025
gb|CW084020.1|CW084020 104_426_10945525_116_32440_055 Sorgh... 119 6e-025
gb|CW265350.1|CW265350 104_734_11231825_148_35261_069 Sorgh... 119 6e-025
gb|CW278981.1|CW278981 104_753_11406838_116_35426_085 Sorgh... 119 6e-025
gb|CF428156.1|CF428156 PH1_13_G05.b1_A002 Phosphorous-defic... 119 6e-025
gb|CX609667.1|CX609667 ANR1_14_B08.b1_A002 Anaerobic roots ... 119 6e-025
gb|BZ628007.1|BZ628007 ih57b10.b1 WGS-SbicolorF (DH5a methy... 111 1e-022
gb|CW200287.1|CW200287 104_625_11183983_148_36862_020 Sorgh... 105 8e-021
gb|CX618330.1|CX618330 GABR1_39_A08.b1_A002 GA- or brassino... 103 3e-020
gb|BE359082.1|BE359082 DG1_38_F04.g1_A002 Dark Grown 1 (DG1... 98 2e-018
gb|BE359974.1|BE359974 DG1_60_C01.g2_A002 Dark Grown 1 (DG1... 98 2e-018
gb|CW062294.1|CW062294 104_307_10521260_5_30083 Sorghum met... 96 8e-018
gb|AW679257.1|AW679257 WS1_23_F01.g1_A002 Water-stressed 1 ... 96 8e-018
gb|CW203461.1|CW203461 104_631_11186033_148_37093_077 Sorgh... 92 1e-016
gb|CW200286.1|CW200286 104_625_11183983_116_36861_020 Sorgh... 88 2e-015
gb|CL187366.1|CL187366 104_402_10900827_116_32436_002 Sorgh... 86 8e-015
gb|CW501587.1|CW501587 fsbb001f297h15k0 Sorghum methylation... 86 8e-015
gb|CL154714.1|CL154714 104_340_10781602_116_31470_082 Sorgh... 82 1e-013
gb|CW056988.1|CW056988 104_298_10517976_115_30157 Sorghum m... 82 1e-013
gb|CX622223.1|CX622223 GABR1_62_E08.g2_A002 GA- or brassino... 82 1e-013
gb|CW130771.1|CW130771 104_513_11115302_116_34783_057 Sorgh... 80 5e-013
gb|CW312636.1|CW312636 104_802_11470866_116_35781_069 Sorgh... 80 5e-013
gb|CW312637.1|CW312637 104_802_11470866_148_35777_069 Sorgh... 80 5e-013
gb|CW363376.1|CW363376 fsbb001f034p04k0 Sorghum methylation... 78 2e-012
gb|CW157678.1|CW157678 104_561_11147653_116_36391_061 Sorgh... 76 8e-012
gb|CW475327.1|CW475327 fsbb001f231k04f0 Sorghum methylation... 74 3e-011
gb|CW223632.1|CW223632 104_659_11203019_148_37186_038 Sorgh... 72 1e-010
gb|CF489797.1|CF489797 POL1_59_E03.g1_A002 Pollen Sorghum b... 72 1e-010
gb|CW223631.1|CW223631 104_659_11203019_116_37185_038 Sorgh... 68 2e-009
gb|CL175246.1|CL175246 104_380_10892299_116_31767_283 Sorgh... 66 7e-009
gb|CL187365.1|CL187365 104_402_10900827_114_32432_002 Sorgh... 66 7e-009
gb|CW222899.1|CW222899 104_658_11202620_116_37184_072 Sorgh... 66 7e-009
gb|CB927938.1|CB927938 ABA1_35_B08.b1_A012 Abscisic acid-tr... 66 7e-009
gb|CN133765.1|CN133765 OX1_18_E06.b1_A002 Oxidatively-stres... 66 7e-009
gb|CX622132.1|CX622132 GABR1_62_E08.b2_A002 GA- or brassino... 64 3e-008
gb|BZ366101.1|BZ366101 ic94f06.g1 WGS-SbicolorF (JM107 adap... 58 2e-006
gb|CW107875.1|CW107875 104_478_11096833_116_34485_009 Sorgh... 58 2e-006
gb|CW265845.1|CW265845 104_735_11232105_116_35269_041 Sorgh... 58 2e-006
gb|CW270523.1|CW270523 104_742_11402473_116_35332_011 Sorgh... 58 2e-006
gb|CW283440.1|CW283440 104_759_11409248_148_35476_018 Sorgh... 58 2e-006
gb|BF481152.1|BF481152 FM1_17_A06.g1_A003 Floral-Induced Me... 58 2e-006
gb|BF586785.1|BF586785 FM1_30_C10.g1_A003 Floral-Induced Me... 58 2e-006
gb|BF588025.1|BF588025 FM1_35_G06.g1_A003 Floral-Induced Me... 58 2e-006
gb|BG101909.1|BG101909 RHIZ2_21_D02.g1_A003 Rhizome2 (RHIZ2... 58 2e-006
gb|BG466101.1|BG466101 RHIZ2_48_F03.g1_A003 Rhizome2 (RHIZ2... 58 2e-006
gb|CN130398.1|CN130398 RHOH1_41_F02.b1_A002 Acid- and alkal... 58 2e-006
gb|CN141229.1|CN141229 OX1_50_D06.b1_A002 Oxidatively-stres... 58 2e-006
gb|CL176130.1|CL176130 104_382_10892918_148_31762_134 Sorgh... 56 7e-006
gb|CW084019.1|CW084019 104_426_10945525_114_32376_055 Sorgh... 56 7e-006
gb|CW090795.1|CW090795 104_436_10949477_114_32604_017 Sorgh... 56 7e-006
gb|CW095662.1|CW095662 104_460_11001451_116_34326_066 Sorgh... 56 7e-006
gb|CW139337.1|CW139337 104_529_11135186_116_34905_007 Sorgh... 56 7e-006
gb|CW233283.1|CW233283 104_686_11213310_116_37376_025 Sorgh... 56 7e-006
gb|CW236094.1|CW236094 104_691_11215426_148_37495_033 Sorgh... 56 7e-006
gb|CW265349.1|CW265349 104_734_11231825_116_35257_069 Sorgh... 56 7e-006
gb|CW277776.1|CW277776 104_752_11406206_148_35418_063 Sorgh... 56 7e-006
gb|CW300492.1|CW300492 104_783_11463692_116_36252_066 Sorgh... 56 7e-006
gb|CB925266.1|CB925266 ABA1_32_F07.b1_A012 Abscisic acid-tr... 56 7e-006
gb|CB926347.1|CB926347 ABA1_8_G03.b1_A012 Abscisic acid-tre... 56 7e-006
gb|CB926950.1|CB926950 ABA1_11_B02.b1_A012 Abscisic acid-tr... 56 7e-006
gb|CD426207.1|CD426207 SA1_19_E09.b1_A002 Salicylic acid-tr... 56 7e-006
gb|CF073799.1|CF073799 FE1_12_E11.b1_A002 Iron-deficient se... 56 7e-006
gb|CF427842.1|CF427842 PH1_11_E12.b1_A002 Phosphorous-defic... 56 7e-006
gb|CN138029.1|CN138029 OX1_61_F11.b1_A002 Oxidatively-stres... 56 7e-006
gb|CL150648.1|CL150648 104_332_10778683_114_31357_235 Sorgh... 52 1e-004
gb|CL180825.1|CL180825 104_391_10896300_148_31927_060 Sorgh... 52 1e-004
gb|CW058606.1|CW058606 104_301_10518833_115_30164 Sorghum m... 52 1e-004
gb|CW089259.1|CW089259 104_434_10948601_114_32582_071 Sorgh... 52 1e-004
gb|CW089260.1|CW089260 104_434_10948601_115_32586_071 Sorgh... 52 1e-004
gb|CW173419.1|CW173419 104_585_11156835_148_36550_014 Sorgh... 52 1e-004
gb|CW285613.1|CW285613 104_763_11410426_148_35506_047 Sorgh... 52 1e-004
gb|CW296771.1|CW296771 104_778_11461693_116_35628_051 Sorgh... 52 1e-004
gb|CW296772.1|CW296772 104_778_11461693_148_35632_051 Sorgh... 52 1e-004
gb|CW378029.1|CW378029 fsbb001f056j19k0 Sorghum methylation... 52 1e-004
gb|CW392765.1|CW392765 fsbb001f079i12k0 Sorghum methylation... 52 1e-004
gb|CW409172.1|CW409172 fsbb001f103f24k0 Sorghum methylation... 52 1e-004
gb|CW463308.1|CW463308 fsbb001f211n13f0 Sorghum methylation... 52 1e-004
gb|BE355481.1|BE355481 DG1_114_G09.g1_A002 Dark Grown 1 (DG... 52 1e-004
gb|BE358427.1|BE358427 DG1_29_F10.g1_A002 Dark Grown 1 (DG1... 52 1e-004
gb|CF428571.1|CF428571 PH1_9_H04.b1_A002 Phosphorous-defici... 52 1e-004
gb|CX607334.1|CX607334 ANR1_8_A10.b1_A002 Anaerobic roots S... 52 1e-004
gb|CX608331.1|CX608331 ANR1_38_B01.b1_A002 Anaerobic roots ... 52 1e-004
gb|CX608499.1|CX608499 ANR1_39_A08.b1_A002 Anaerobic roots ... 52 1e-004
gb|CX623017.1|CX623017 GABR1_67_F09.b1_A002 GA- or brassino... 52 1e-004
gb|CX623201.1|CX623201 GABR1_68_G03.b1_A002 GA- or brassino... 52 1e-004
gb|BZ335976.1|BZ335976 hz27h12.b1 WGS-SbicolorF (JM107 adap... 50 4e-004
gb|CL147747.1|CL147747 104_327_10592607_116_31781_115 Sorgh... 50 4e-004
gb|CW063958.1|CW063958 104_309_10522296_114_30136 Sorghum m... 50 4e-004
gb|CW063959.1|CW063959 104_309_10522296_115_30140 Sorghum m... 50 4e-004
gb|CW124056.1|CW124056 104_503_11111561_148_34693_069 Sorgh... 50 4e-004
gb|CW136399.1|CW136399 104_521_11118359_148_34840_090 Sorgh... 50 4e-004
gb|CW167042.1|CW167042 104_576_11153389_148_36490_061 Sorgh... 50 4e-004
gb|CW288258.1|CW288258 104_766_11411855_148_35535_086 Sorgh... 50 4e-004
gb|CW385470.1|CW385470 fsbb001f068p12f0 Sorghum methylation... 50 4e-004
gb|CW385471.1|CW385471 fsbb001f068p12k0 Sorghum methylation... 50 4e-004
gb|CW423637.1|CW423637 fsbb001f133i18f0 Sorghum methylation... 50 4e-004
gb|CW445252.1|CW445252 fsbb001f170e15k0 Sorghum methylation... 50 4e-004
gb|CW479719.1|CW479719 fsbb001f238g06k0 Sorghum methylation... 50 4e-004
gb|CW483111.1|CW483111 fsbb001f244j08f0 Sorghum methylation... 50 4e-004
gb|CW493408.1|CW493408 fsbb001f284c16f0 Sorghum methylation... 50 4e-004
gb|CW498179.1|CW498179 fsbb001f291e19f0 Sorghum methylation... 50 4e-004
gb|BE355032.1|BE355032 DG1_10_A04.g1_A002 Dark Grown 1 (DG1... 50 4e-004
gb|BE358440.1|BE358440 DG1_29_G10.g1_A002 Dark Grown 1 (DG1... 50 4e-004
gb|BE595691.1|BE595691 PI1_55_E01.g1_A002 Pathogen induced ... 50 4e-004
gb|BG241411.1|BG241411 RHIZ2_51_F06.g1_A003 Rhizome2 (RHIZ2... 50 4e-004
gb|BG323036.1|BG323036 EM1_14_B07.g1_A002 Embryo 1 (EM1) So... 50 4e-004
gb|BG410775.1|BG410775 EM1_25_F05.g1_A002 Embryo 1 (EM1) So... 50 4e-004
gb|CD221508.1|CD221508 CCC1_55_C03.b1_A007 Callus culture/c... 50 4e-004
gb|CD228503.1|CD228503 CCC1_8_D11.b1_A007 Callus culture/ce... 50 4e-004
gb|CD428859.1|CD428859 ETH1_1_C11.b1_A002 Ethylene-treated ... 50 4e-004
gb|CD429410.1|CD429410 ETH1_4_G04.b1_A002 Ethylene-treated ... 50 4e-004
gb|CN126572.1|CN126572 RHOH1_18_A06.b1_A002 Acid- and alkal... 50 4e-004
gb|CX606448.1|CX606448 ANR1_3_C08.b1_A002 Anaerobic roots S... 50 4e-004
gb|CX607843.1|CX607843 ANR1_31_C11.b1_A002 Anaerobic roots ... 50 4e-004
gb|CX613398.1|CX613398 GABR1_8_A03.b1_A002 GA- or brassinol... 50 4e-004
gb|CX616004.1|CX616004 GABR1_25_F09.b1_A002 GA- or brassino... 50 4e-004
gb|CX617551.1|CX617551 GABR1_34_H10.b1_A002 GA- or brassino... 50 4e-004
gb|CX621626.1|CX621626 GABR1_59_E11.b1_A002 GA- or brassino... 50 4e-004
gb|AF527807.1| Sorghum bicolor clone BAC SB_BBc0126P21 php2... 50 4e-004
gb|BZ351665.1|BZ351665 hw05b10.g1 WGS-SbicolorF (JM107 adap... 48 0.002
gb|CL193465.1|CL193465 104_417_10940951_116_32278_094 Sorgh... 48 0.002
gb|CW173832.1|CW173832 104_585_11157062_116_36557_053 Sorgh... 48 0.002
gb|CW203460.1|CW203460 104_631_11186033_116_37092_077 Sorgh... 48 0.002
gb|CW424419.1|CW424419 fsbb001f134l24f0 Sorghum methylation... 48 0.002
gb|BE126076.1|BE126076 DG1_65_E03.g1_A002 Dark Grown 1 (DG1... 48 0.002
gb|BE362888.2|BE362888 DG1_90_B11.g1_A002 Dark Grown 1 (DG1... 48 0.002
gb|CX616980.1|CX616980 GABR1_31_B05.b1_A002 GA- or brassino... 48 0.002
gb|CX618886.1|CX618886 GABR1_42_F03.b1_A002 GA- or brassino... 48 0.002
gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete seq... 48 0.002
gb|CW222295.1|CW222295 104_657_11202300_148_37449_036 Sorgh... 46 0.007
gb|CW364201.1|CW364201 fsbb001f036c07f0 Sorghum methylation... 46 0.007
gb|BZ345492.1|BZ345492 hr51h05.b1 WGS-SbicolorF (JM107 adap... 44 0.027
gb|BZ422916.1|BZ422916 hz32a10.g1 WGS-SbicolorF (DH5a methy... 44 0.027
gb|CL188254.1|CL188254 104_404_10901465_114_32444_071 Sorgh... 44 0.027
gb|CW027952.1|CW027952 104_254_10498806_116_30396 Sorghum m... 44 0.027
gb|CW034708.1|CW034708 104_265_10502716_114_30378 Sorghum m... 44 0.027
gb|CW035605.1|CW035605 104_266_10503259_114_30376 Sorghum m... 44 0.027
gb|CW041558.1|CW041558 104_275_10506614_115_30285 Sorghum m... 44 0.027
gb|CW063386.1|CW063386 104_309_10521975_114_30134 Sorghum m... 44 0.027
gb|CW128974.1|CW128974 104_510_11114307_116_34756_002 Sorgh... 44 0.027
gb|CW128975.1|CW128975 104_510_11114307_148_34752_002 Sorgh... 44 0.027
gb|CW186267.1|CW186267 104_604_11166477_148_36710_093 Sorgh... 44 0.027
gb|CW301970.1|CW301970 104_786_11464478_116_35663_063 Sorgh... 44 0.027
gb|CW347048.1|CW347048 fsbb001f006m24k0 Sorghum methylation... 44 0.027
gb|CW451919.1|CW451919 fsbb001f192d11f0 Sorghum methylation... 44 0.027
gb|CW489772.1|CW489772 fsbb001f274o09k0 Sorghum methylation... 44 0.027
gb|BG465262.1|BG465262 EM1_74_A07.g1_A002 Embryo 1 (EM1) So... 44 0.027
gb|CD203746.1|CD203746 HS1_1_B01.g1_A012 Heat-shocked seedl... 44 0.027
gb|CF485597.1|CF485597 POL1_32_B03.g1_A002 Pollen Sorghum b... 44 0.027
gb|CN127822.1|CN127822 RHOH1_25_F09.b1_A002 Acid- and alkal... 44 0.027
gb|BZ340250.1|BZ340250 ic37f08.b1 WGS-SbicolorF (JM107 adap... 42 0.11
gb|CL190972.1|CL190972 104_409_10906457_114_32490_071 Sorgh... 42 0.11
gb|CW173316.1|CW173316 104_584_11156777_116_36545_065 Sorgh... 42 0.11
gb|CW217040.1|CW217040 104_650_11195443_148_37130_078 Sorgh... 42 0.11
gb|CW264347.1|CW264347 104_733_11231241_116_35253_045 Sorgh... 42 0.11
gb|CW323782.1|CW323782 104_818_11476813_116_35902_061 Sorgh... 42 0.11
gb|CW370930.1|CW370930 fsbb001f046c06k0 Sorghum methylation... 42 0.11
gb|CW473657.1|CW473657 fsbb001f229c07f0 Sorghum methylation... 42 0.11
gb|CW476248.1|CW476248 fsbb001f233a10f0 Sorghum methylation... 42 0.11
gb|AW284606.1|AW284606 LG1_271_C02.g1_A002 Light Grown 1 (L... 42 0.11
gb|AW679122.1|AW679122 WS1_22_E08.g1_A002 Water-stressed 1 ... 42 0.11
gb|BE361351.1|BE361351 DG1_71_C04.g1_A002 Dark Grown 1 (DG1... 42 0.11
gb|BE362158.1|BE362158 DG1_84_E06.g1_A002 Dark Grown 1 (DG1... 42 0.11
gb|BE599295.1|BE599295 PI1_87_G04.g1_A002 Pathogen induced ... 42 0.11
gb|CD207584.1|CD207584 HS1_33_G09.g1_A012 Heat-shocked seed... 42 0.11
gb|CD225266.1|CD225266 CCC1_39_E05.b1_A007 Callus culture/c... 42 0.11
gb|CX616795.1|CX616795 GABR1_30_A10.b1_A002 GA- or brassino... 42 0.11
gb|AF199453.1|AF199453 Sorghum bicolor UDP-glucose glucosyl... 42 0.11
emb|AX163853.1| Sequence 2 from Patent WO0140491 42 0.11
gb|BZ781167.1|BZ781167 ii24g06.g1 WGS-SbicolorF (DH5a methy... 40 0.42
gb|CL189680.1|CL189680 104_407_10905541_116_32481_061 Sorgh... 40 0.42
gb|CW054459.1|CW054459 104_295_10516543_115_30176 Sorghum m... 40 0.42
gb|CW072473.1|CW072473 104_325_10592285_116_30541 Sorghum m... 40 0.42
gb|CW110223.1|CW110223 104_482_11103569_116_34509_065 Sorgh... 40 0.42
gb|CW175806.1|CW175806 104_588_11158149_116_36574_087 Sorgh... 40 0.42
gb|CW269433.1|CW269433 104_740_11401840_148_35315_054 Sorgh... 40 0.42
gb|CW307346.1|CW307346 104_795_11468092_116_35729_010 Sorgh... 40 0.42
gb|CW307347.1|CW307347 104_795_11468092_148_35737_010 Sorgh... 40 0.42
gb|CW312127.1|CW312127 104_801_11470592_116_36284_018 Sorgh... 40 0.42
gb|CW312128.1|CW312128 104_801_11470592_148_36283_018 Sorgh... 40 0.42
gb|CW408966.1|CW408966 fsbb001f103b09f0 Sorghum methylation... 40 0.42
gb|CW408967.1|CW408967 fsbb001f103b09k0 Sorghum methylation... 40 0.42
gb|CW432295.1|CW432295 fsbb001f146o21f0 Sorghum methylation... 40 0.42
gb|CW500380.1|CW500380 fsbb001f295k23k0 Sorghum methylation... 40 0.42
gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence 40 0.42
>gb|CW334674.1|CW334674 104_833_11482623_148_36071_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11482623, DNA
sequence
Length = 576
Score = 573 bits (289), Expect = e-161
Identities = 474/535 (88%), Gaps = 3/535 (0%)
Strand = Plus / Minus
Query: 248 aggctaggagcacctcttcgatgagcctgtctacgttgcgcatagaccgtccgtcaggcc 307
|||||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||
Sbjct: 535 aggctaggagcacctcgtcgatgagcctgtccacgttgcgcatggatcgtccgtcgggcc 476
Query: 308 ctgcagcggccacggcgctgtccctgagttcagtcacgcgccggagcatctcttgccctt 367
|| |||||||||||||| ||| |||| || ||||| |||||| ||||||| ||||||
Sbjct: 475 tcgccgcggccacggcgctttccttgagctccgtcactcgccggcgcatctcccgccctt 416
Query: 368 tctccccctccatggcctcccgtatgagcgactctacctcgccccgctgtacatcgtcac 427
|||||||||||||||||||||||||||||| ||| |||||||||||| | || ||| |
Sbjct: 415 tctccccctccatggcctcccgtatgagcgcctccacctcgccccgccggacgtcgctgc 356
Query: 428 cgatctcttttccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcgg 487
||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 355 cgatctccatcccgatgccccactcggtgcgcttgtaccggcagttggtctgctgctcgg 296
Query: 488 cgaagaagggccagcacagcatgggaacgccgccgcaaatactctccagcgtggagttcc 547
|||||||||||||||||| |||||| ||||||||||| || |||||||||||||||||||
Sbjct: 295 cgaagaagggccagcacaccatgggcacgccgccgcagatgctctccagcgtggagttcc 236
Query: 548 acccggagtgcgtcaggaacacccccacggcatcatgctccagcacagctgcctgcgggc 607
||||||||||||||| |||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 235 acccggagtgcgtcaagaacacccccacggcatcgtgctccagcaccgccgcctgcgggc 176
Query: 608 accacgtagacagcatgcttcgtccctctgtcgcagctgagaactctggcggcagc---c 664
||||||| ||||||||||| || ||||| ||||| || | |||||| | ||||||| |
Sbjct: 175 accacgtcgacagcatgctccggccctccgtcgcggccgcgaactccgacggcagcccgc 116
Query: 665 cggcggagtcgccactcttgacgaggtccgggcgtacgttccataggaagtagtagccgg 724
|| || | |||| | ||||||||||||||| || |||||||| |||||| ||||||||
Sbjct: 115 cgccgccgccgccgcccttgacgaggtccggacgcacgttccacaggaaggcgtagccgg 56
Query: 725 tgttggccagcccccacgcgaactcgaccagctgctcgttggacatcaccgtgat 779
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 55 tgttggccagcccccacgcgaactcggccagctgctcgttggacatcaccgtgat 1
>gb|CL175428.1|CL175428 104_381_10892447_116_31765_047 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892447, DNA
sequence
Length = 674
Score = 569 bits (287), Expect = e-160
Identities = 478/541 (88%), Gaps = 3/541 (0%)
Strand = Plus / Plus
Query: 248 aggctaggagcacctcttcgatgagcctgtctacgttgcgcatagaccgtccgtcaggcc 307
|||||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||
Sbjct: 134 aggctaggagcacctcgtcgatgagcctgtccacgttgcgcatggatcgtccgtcgggcc 193
Query: 308 ctgcagcggccacggcgctgtccctgagttcagtcacgcgccggagcatctcttgccctt 367
|| |||||||||||||| ||| |||| || ||||| |||||| ||||||| ||||||
Sbjct: 194 tcgccgcggccacggcgctttccttgagctccgtcactcgccggcgcatctcccgccctt 253
Query: 368 tctccccctccatggcctcccgtatgagcgactctacctcgccccgctgtacatcgtcac 427
|||||||||||||||||||||||||||||| ||| |||||||||||| | || ||| |
Sbjct: 254 tctccccctccatggcctcccgtatgagcgcctccacctcgccccgccggacgtcgctgc 313
Query: 428 cgatctcttttccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcgg 487
||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 314 cgatctccatcccgatgccccactcggtgcgcttgtaccggcagttggtctgctgctcgg 373
Query: 488 cgaagaagggccagcacagcatgggaacgccgccgcaaatactctccagcgtggagttcc 547
|||||||||||||||||| |||||| ||||||||||| || |||||||||||||||||||
Sbjct: 374 cgaagaagggccagcacaccatgggcacgccgccgcagatgctctccagcgtggagttcc 433
Query: 548 acccggagtgcgtcaggaacacccccacggcatcatgctccagcacagctgcctgcgggc 607
||||||||||||||| |||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 434 acccggagtgcgtcaagaacacccccacggcatcgtgctccagcaccgccgcctgcgggc 493
Query: 608 accacgtagacagcatgcttcgtccctctgtcgcagctgagaactctggcggcagc---c 664
||||||| ||||||||||| || ||||| ||||| || | |||||| | ||||||| |
Sbjct: 494 accacgtcgacagcatgctccggccctccgtcgcggccgcgaactccgacggcagcccgc 553
Query: 665 cggcggagtcgccactcttgacgaggtccgggcgtacgttccataggaagtagtagccgg 724
|| || | |||| | ||||||||||||||| || |||||||| |||||| ||||||||
Sbjct: 554 cgccgccgccgccgcccttgacgaggtccggacgcacgttccacaggaaggcgtagccgg 613
Query: 725 tgttggccagcccccacgcgaactcgaccagctgctcgttggacatcaccgtgatgctcc 784
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 614 tgttggccagcccccacgcgaactcggccagctgctcgttggacattcccgtgatgctcc 673
Query: 785 c 785
|
Sbjct: 674 c 674
>gb|CN143621.1|CN143621 WOUND1_17_H10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_17_H10_A002 3', mRNA sequence
Length = 763
Score = 474 bits (239), Expect = e-132
Identities = 374/419 (89%)
Strand = Plus / Minus
Query: 248 aggctaggagcacctcttcgatgagcctgtctacgttgcgcatagaccgtccgtcaggcc 307
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 466 aggctaggagcacctcgtcgatgagcctgtccacgttgcgcatggaccgtccgtcgggcc 407
Query: 308 ctgcagcggccacggcgctgtccctgagttcagtcacgcgccggagcatctcttgccctt 367
|| |||||||||||||| ||| |||| || ||||| |||||| ||||||| ||||||
Sbjct: 406 tcgccgcggccacggcgctttccttgagctccgtcactcgccggcgcatctcccgccctt 347
Query: 368 tctccccctccatggcctcccgtatgagcgactctacctcgccccgctgtacatcgtcac 427
|||||||||||||||||||||||||||||| ||| |||||||||||| | || ||| |
Sbjct: 346 tctccccctccatggcctcccgtatgagcgcctccacctcgccccgccggacgtcgctgc 287
Query: 428 cgatctcttttccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcgg 487
||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 286 cgatctccatcccgatgccccactcggtgcgcttgtaccggcagttggtctgctgctcgg 227
Query: 488 cgaagaagggccagcacagcatgggaacgccgccgcaaatactctccagcgtggagttcc 547
|||||||||||||||||| |||||| ||||||||||| || |||||||||||||||||||
Sbjct: 226 cgaagaagggccagcacaccatgggcacgccgccgcagatgctctccagcgtggagttcc 167
Query: 548 acccggagtgcgtcaggaacacccccacggcatcatgctccagcacagctgcctgcgggc 607
||||||||||||||| |||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 166 acccggagtgcgtcaagaacacccccacggcatcgtgctccagcaccgccgcctgcgggc 107
Query: 608 accacgtagacagcatgcttcgtccctctgtcgcagctgagaactctggcggcagcccg 666
||||||| ||||||||||| || ||||| ||||| || | |||||| | ||||||||||
Sbjct: 106 accacgtcgacagcatgctccggccctccgtcgcggccgcgaactccgacggcagcccg 48
>gb|BE358121.1|BE358121 DG1_24_C10.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 687
Score = 456 bits (230), Expect = e-126
Identities = 353/394 (89%)
Strand = Plus / Minus
Query: 248 aggctaggagcacctcttcgatgagcctgtctacgttgcgcatagaccgtccgtcaggcc 307
|||||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||
Sbjct: 402 aggctaggagcacctcgtcgatgagcctgtccacgttgcgcatggatcgtccgtcgggcc 343
Query: 308 ctgcagcggccacggcgctgtccctgagttcagtcacgcgccggagcatctcttgccctt 367
|| |||||||||||||| ||| |||| || ||||| |||||| ||||||| ||||||
Sbjct: 342 tcgccgcggccacggcgctttccttgagctccgtcactcgccggcgcatctcccgccctt 283
Query: 368 tctccccctccatggcctcccgtatgagcgactctacctcgccccgctgtacatcgtcac 427
|||||||||||||||||||||||||||||| ||| |||||||||||| | || ||| |
Sbjct: 282 tctccccctccatggcctcccgtatgagcgcctccacctcgccccgccggacgtcgctgc 223
Query: 428 cgatctcttttccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcgg 487
||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 222 cgatctccatcccgatgccccactcggtgcgcttgtaccggcagttggtctgctgctcgg 163
Query: 488 cgaagaagggccagcacagcatgggaacgccgccgcaaatactctccagcgtggagttcc 547
|||||||||||||||||| |||||| ||||||||||| || |||||||||||||||||||
Sbjct: 162 cgaagaagggccagcacaccatgggcacgccgccgcagatgctctccagcgtggagttcc 103
Query: 548 acccggagtgcgtcaggaacacccccacggcatcatgctccagcacagctgcctgcgggc 607
||||||||||||||| |||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 102 acccggagtgcgtcaagaacacccccacggcatcgtgctccagcaccgccgcctgcgggc 43
Query: 608 accacgtagacagcatgcttcgtccctctgtcgc 641
||||||| ||||||||||| || ||||| |||||
Sbjct: 42 accacgtcgacagcatgctccggccctccgtcgc 9
>gb|BE600358.1|BE600358 PI1_95_D08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 685
Score = 456 bits (230), Expect = e-126
Identities = 353/394 (89%)
Strand = Plus / Minus
Query: 248 aggctaggagcacctcttcgatgagcctgtctacgttgcgcatagaccgtccgtcaggcc 307
|||||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||
Sbjct: 400 aggctaggagcacctcgtcgatgagcctgtccacgttgcgcatggatcgtccgtcgggcc 341
Query: 308 ctgcagcggccacggcgctgtccctgagttcagtcacgcgccggagcatctcttgccctt 367
|| |||||||||||||| ||| |||| || ||||| |||||| ||||||| ||||||
Sbjct: 340 tcgccgcggccacggcgctttccttgagctccgtcactcgccggcgcatctcccgccctt 281
Query: 368 tctccccctccatggcctcccgtatgagcgactctacctcgccccgctgtacatcgtcac 427
|||||||||||||||||||||||||||||| ||| |||||||||||| | || ||| |
Sbjct: 280 tctccccctccatggcctcccgtatgagcgcctccacctcgccccgccggacgtcgctgc 221
Query: 428 cgatctcttttccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcgg 487
||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 220 cgatctccatcccgatgccccactcggtgcgcttgtaccggcagttggtctgctgctcgg 161
Query: 488 cgaagaagggccagcacagcatgggaacgccgccgcaaatactctccagcgtggagttcc 547
|||||||||||||||||| |||||| ||||||||||| || |||||||||||||||||||
Sbjct: 160 cgaagaagggccagcacaccatgggcacgccgccgcagatgctctccagcgtggagttcc 101
Query: 548 acccggagtgcgtcaggaacacccccacggcatcatgctccagcacagctgcctgcgggc 607
||||||||||||||| |||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 100 acccggagtgcgtcaagaacacccccacggcatcgtgctccagcaccgccgcctgcgggc 41
Query: 608 accacgtagacagcatgcttcgtccctctgtcgc 641
||||||| ||||||||||| || ||||| |||||
Sbjct: 40 accacgtcgacagcatgctccggccctccgtcgc 7
>gb|CX619210.1|CX619210 GABR1_44_D05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_44_D05_A002 3', mRNA sequence
Length = 555
Score = 456 bits (230), Expect = e-126
Identities = 353/394 (89%)
Strand = Plus / Minus
Query: 248 aggctaggagcacctcttcgatgagcctgtctacgttgcgcatagaccgtccgtcaggcc 307
|||||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||
Sbjct: 401 aggctaggagcacctcgtcgatgagcctgtccacgttgcgcatggatcgtccgtcgggcc 342
Query: 308 ctgcagcggccacggcgctgtccctgagttcagtcacgcgccggagcatctcttgccctt 367
|| |||||||||||||| ||| |||| || ||||| |||||| ||||||| ||||||
Sbjct: 341 tcgccgcggccacggcgctttccttgagctccgtcactcgccggcgcatctcccgccctt 282
Query: 368 tctccccctccatggcctcccgtatgagcgactctacctcgccccgctgtacatcgtcac 427
|||||||||||||||||||||||||||||| ||| |||||||||||| | || ||| |
Sbjct: 281 tctccccctccatggcctcccgtatgagcgcctccacctcgccccgccggacgtcgctgc 222
Query: 428 cgatctcttttccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcgg 487
||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 221 cgatctccatcccgatgccccactcggtgcgcttgtaccggcagttggtctgctgctcgg 162
Query: 488 cgaagaagggccagcacagcatgggaacgccgccgcaaatactctccagcgtggagttcc 547
|||||||||||||||||| |||||| ||||||||||| || |||||||||||||||||||
Sbjct: 161 cgaagaagggccagcacaccatgggcacgccgccgcagatgctctccagcgtggagttcc 102
Query: 548 acccggagtgcgtcaggaacacccccacggcatcatgctccagcacagctgcctgcgggc 607
||||||||||||||| |||||||||||||||||| ||||||||||| || ||||||||||
Sbjct: 101 acccggagtgcgtcaagaacacccccacggcatcgtgctccagcaccgccgcctgcgggc 42
Query: 608 accacgtagacagcatgcttcgtccctctgtcgc 641
||||||| ||||||||||| || ||||| |||||
Sbjct: 41 accacgtcgacagcatgctccggccctccgtcgc 8
>gb|BE364954.1|BE364954 PI1_22_F04.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 459
Score = 446 bits (225), Expect = e-123
Identities = 363/409 (88%)
Strand = Plus / Minus
Query: 258 cacctcttcgatgagcctgtctacgttgcgcatagaccgtccgtcaggccctgcagcggc 317
|||||| |||||||||||||| ||||||||||| || |||||||| |||| || |||||
Sbjct: 459 cacctcgtcgatgagcctgtccacgttgcgcatggatcgtccgtcgggcctcgccgcggc 400
Query: 318 cacggcgctgtccctgagttcagtcacgcgccggagcatctcttgccctttctccccctc 377
||||||||| ||| |||| || ||||| |||||| ||||||| ||||||||||||||||
Sbjct: 399 cacggcgctttccttgagctccgtcactcgccggcgcatctcccgccctttctccccctc 340
Query: 378 catggcctcccgtatgagcgactctacctcgccccgctgtacatcgtcaccgatctcttt 437
|||||||||||||||||||| ||| |||||||||||| | || ||| |||||||| |
Sbjct: 339 catggcctcccgtatgagcgcctccacctcgccccgccggacgtcgctgccgatctccat 280
Query: 438 tccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaaggg 497
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 279 cccgatgccccactcggtgcgcttgtaccggcagttggtctgctgctcggcgaagaaggg 220
Query: 498 ccagcacagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtg 557
|||||||| |||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 219 ccagcacaccatgggcacgccgccgcagatgctctccagcgtggagttccacccggagtg 160
Query: 558 cgtcaggaacacccccacggcatcatgctccagcacagctgcctgcgggcaccacgtaga 617
||||| |||||||||||||||||| ||||||||||| || ||||||||||||||||| ||
Sbjct: 159 cgtcaagaacacccccacggcatcgtgctccagcaccgccgcctgcgggcaccacgtcga 100
Query: 618 cagcatgcttcgtccctctgtcgcagctgagaactctggcggcagcccg 666
||||||||| || ||||| ||||| || | |||||| | ||||||||||
Sbjct: 99 cagcatgctccggccctccgtcgcggccgcgaactccgacggcagcccg 51
>gb|CW334673.1|CW334673 104_833_11482623_116_36070_060 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11482623, DNA
sequence
Length = 661
Score = 440 bits (222), Expect = e-121
Identities = 351/394 (89%)
Strand = Plus / Plus
Query: 248 aggctaggagcacctcttcgatgagcctgtctacgttgcgcatagaccgtccgtcaggcc 307
|||||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||
Sbjct: 267 aggctaggagcacctcgtcgatgagcctgtccacgttgcgcatggatcgtccgtcgggcc 326
Query: 308 ctgcagcggccacggcgctgtccctgagttcagtcacgcgccggagcatctcttgccctt 367
|| |||||||||||||| ||| |||| || ||||| |||||| ||||||| ||||||
Sbjct: 327 tcgccgcggccacggcgctttccttgagctccgtcactcgccggcgcatctcccgccctt 386
Query: 368 tctccccctccatggcctcccgtatgagcgactctacctcgccccgctgtacatcgtcac 427
|||||||||||||||||||||||||||||| ||| |||||||||||| | || ||| |
Sbjct: 387 tctccccctccatggcctcccgtatgagcgcctccacctcgccccgccggacgtcgctgc 446
Query: 428 cgatctcttttccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcgg 487
||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 447 cgatctccatcccgatgccccactcggtgcgcttgtaccggcagttggtctgctgctcgg 506
Query: 488 cgaagaagggccagcacagcatgggaacgccgccgcaaatactctccagcgtggagttcc 547
|||||||||||||||||| |||||| ||||||||||| || |||||||||||||||||||
Sbjct: 507 cgaagaagggccagcacaccatgggcacgccgccgcagatgctctccagcgtggagttcc 566
Query: 548 acccggagtgcgtcaggaacacccccacggcatcatgctccagcacagctgcctgcgggc 607
||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 567 acccggagtgcgtcaagaacacccccacggcatcgtgctccagcactcgcgcctgcgggc 626
Query: 608 accacgtagacagcatgcttcgtccctctgtcgc 641
||||||| ||||||||||| || ||||| |||||
Sbjct: 627 accacgtcgacagcatgctccggccctccgtcgc 660
>gb|CD236389.1|CD236389 SS1_34_G08.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_34_G08_A012 3', mRNA sequence
Length = 627
Score = 440 bits (222), Expect = e-121
Identities = 351/394 (89%)
Strand = Plus / Minus
Query: 248 aggctaggagcacctcttcgatgagcctgtctacgttgcgcatagaccgtccgtcaggcc 307
|||||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||
Sbjct: 399 aggctaggagcacctcgtcgatgagcctgtccacgttgcgcatggatcgtccgtcgggcc 340
Query: 308 ctgcagcggccacggcgctgtccctgagttcagtcacgcgccggagcatctcttgccctt 367
|| |||||||||||||| ||| |||| || ||||| |||||| ||||||| ||||||
Sbjct: 339 tcgccgcggccacggcgctctccttgagctccgtcactcgccggcgcatctcccgccctt 280
Query: 368 tctccccctccatggcctcccgtatgagcgactctacctcgccccgctgtacatcgtcac 427
|||||||||||||||||||||||||||||| ||| |||||||||||| | || ||| |
Sbjct: 279 tctccccctccatggcctcccgtatgagcgcctccacctcgccccgccggacgtcgctgc 220
Query: 428 cgatctcttttccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcgg 487
||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 219 cgatctccatcccgatgccccactcggtgcgcttgtaccggcagttggtctgctgctcgg 160
Query: 488 cgaagaagggccagcacagcatgggaacgccgccgcaaatactctccagcgtggagttcc 547
|||||||||||||||||| |||||| ||||||||||| || ||||| |||||||||||||
Sbjct: 159 cgaagaagggccagcacaccatgggcacgccgccgcagatgctctctagcgtggagttcc 100
Query: 548 acccggagtgcgtcaggaacacccccacggcatcatgctccagcacagctgcctgcgggc 607
||||||||||||||| ||||||||||||||| || ||||||||||| || ||||||||||
Sbjct: 99 acccggagtgcgtcaagaacacccccacggcctcgtgctccagcaccgccgcctgcgggc 40
Query: 608 accacgtagacagcatgcttcgtccctctgtcgc 641
||||||| ||||||||||| || ||||| |||||
Sbjct: 39 accacgtcgacagcatgctccggccctccgtcgc 6
>gb|CF484452.1|CF484452 POL1_25_H12.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_H12_A002 3', mRNA sequence
Length = 662
Score = 400 bits (202), Expect = e-109
Identities = 310/346 (89%)
Strand = Plus / Minus
Query: 248 aggctaggagcacctcttcgatgagcctgtctacgttgcgcatagaccgtccgtcaggcc 307
|||||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||
Sbjct: 354 aggctaggagcacctcgtcgatgagcctgtccacgttgcgcatggatcgtccgtcgggcc 295
Query: 308 ctgcagcggccacggcgctgtccctgagttcagtcacgcgccggagcatctcttgccctt 367
|| |||||||||||||| ||| |||| || ||||| |||||| ||||||| ||||||
Sbjct: 294 tcgccgcggccacggcgctttccttgagctccgtcactcgccggcgcatctcccgccctt 235
Query: 368 tctccccctccatggcctcccgtatgagcgactctacctcgccccgctgtacatcgtcac 427
|||||||||||||||||||||||||||||| ||| |||||||||||| | || ||| |
Sbjct: 234 tctccccctccatggcctcccgtatgagcgcctccacctcgccccgccggacgtcgctgc 175
Query: 428 cgatctcttttccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcgg 487
||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 174 cgatctccatcccgatgccccactcggtgcgcttgtaccggcagttggtctgctgctcgg 115
Query: 488 cgaagaagggccagcacagcatgggaacgccgccgcaaatactctccagcgtggagttcc 547
|||||||||||||||||| |||||| ||||||||||| || |||||||||||||||||||
Sbjct: 114 cgaagaagggccagcacaccatgggcacgccgccgcagatgctctccagcgtggagttcc 55
Query: 548 acccggagtgcgtcaggaacacccccacggcatcatgctccagcac 593
||||||||||||||| |||||||||||||| ||| |||||||||||
Sbjct: 54 acccggagtgcgtcaagaacacccccacgggatcgtgctccagcac 9
>gb|CD212879.1|CD212879 HS1_17_F07.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_17_F07_A012 3', mRNA sequence
Length = 648
Score = 385 bits (194), Expect = e-105
Identities = 308/346 (89%)
Strand = Plus / Minus
Query: 248 aggctaggagcacctcttcgatgagcctgtctacgttgcgcatagaccgtccgtcaggcc 307
|||||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||
Sbjct: 352 aggctaggagcacctcgtcgatgagcctgtccacgttgcgcatggatcgtccgtcgggcc 293
Query: 308 ctgcagcggccacggcgctgtccctgagttcagtcacgcgccggagcatctcttgccctt 367
|| |||||||||||||| ||| |||| || ||||| |||||| ||||||| ||||||
Sbjct: 292 tcgccgcggccacggcgctctccttgagctccgtcactcgccggcgcatctcccgccctt 233
Query: 368 tctccccctccatggcctcccgtatgagcgactctacctcgccccgctgtacatcgtcac 427
|||||||||||||||||||||||||||||| ||| |||||||||||| | || ||| |
Sbjct: 232 tctccccctccatggcctcccgtatgagcgcctccacctcgccccgccggacgtcgctgc 173
Query: 428 cgatctcttttccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcgg 487
||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 172 cgatctccatcccgatgccccactcggtgcgcttgtaccggcagttggtctgctgctcgg 113
Query: 488 cgaagaagggccagcacagcatgggaacgccgccgcaaatactctccagcgtggagttcc 547
|||||||||||||||||| |||||| ||||||||||| || ||||| |||||||||||||
Sbjct: 112 cgaagaagggccagcacaccatgggcacgccgccgcagatgctctctagcgtggagttcc 53
Query: 548 acccggagtgcgtcaggaacacccccacggcatcatgctccagcac 593
||||||||||||||| |||||||||||||| || |||||||||||
Sbjct: 52 acccggagtgcgtcaagaacacccccacgggctcgtgctccagcac 7
>gb|CW049083.1|CW049083 104_288_10513818_115_30199 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10513818, DNA
sequence
Length = 389
Score = 379 bits (191), Expect = e-103
Identities = 331/377 (87%), Gaps = 3/377 (0%)
Strand = Plus / Minus
Query: 340 gtcacgcgccggagcatctcttgccctttctccccctccatggcctcccgtatgagcgac 399
||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 377 gtcactcgccggcgcatctcccgccctttctccccctccatggcctcccgtatgagcgcc 318
Query: 400 tctacctcgccccgctgtacatcgtcaccgatctcttttccgatgccccactcggtgcac 459
|| |||||||||||| | || ||| |||||||| | ||||||||||||||||||| |
Sbjct: 317 tccacctcgccccgccggacgtcgctgccgatctccatcccgatgccccactcggtgcgc 258
Query: 460 ttgtatcggcagttggtctgctgctcggcgaagaagggccagcacagcatgggaacgccg 519
||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 257 ttgtaccggcagttggtctgctgctcggcgaagaagggccagcacaccatgggcacgccg 198
Query: 520 ccgcaaatactctccagcgtggagttccacccggagtgcgtcaggaacacccccacggca 579
||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 197 ccgcagatgctctccagcgtggagttccacccggagtgcgtcaagaacacccccacggca 138
Query: 580 tcatgctccagcacagctgcctgcgggcaccacgtagacagcatgcttcgtccctctgtc 639
|| ||||||||||| || ||||||||||||||||| ||||||||||| || ||||| |||
Sbjct: 137 tcgtgctccagcaccgccgcctgcgggcaccacgtcgacagcatgctccggccctccgtc 78
Query: 640 gcagctgagaactctggcggcagcccggcggagtcgccact---cttgacgaggtccggg 696
|| || | |||||| | |||||||||| || | |||| | |||||||||||||||
Sbjct: 77 gcggccgcgaactccgacggcagcccgccgccgccgccgccgcccttgacgaggtccgga 18
Query: 697 cgtacgttccataggaa 713
|| |||||||| |||||
Sbjct: 17 cgcacgttccacaggaa 1
>gb|CW445368.1|CW445368 fsbb001f170h16f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f170h16, DNA
sequence
Length = 631
Score = 305 bits (154), Expect = 5e-081
Identities = 253/286 (88%)
Strand = Plus / Plus
Query: 248 aggctaggagcacctcttcgatgagcctgtctacgttgcgcatagaccgtccgtcaggcc 307
|||||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||
Sbjct: 346 aggctaggagcacctcgtcgatgagcctgtccacgttgcgcatggatcgtccgtcgggcc 405
Query: 308 ctgcagcggccacggcgctgtccctgagttcagtcacgcgccggagcatctcttgccctt 367
|| |||||||||||||| ||| |||| || ||||| |||||| ||||||| ||||||
Sbjct: 406 tcgccgcggccacggcgctttccttgagctccgtcactcgccggcgcatctcccgccctt 465
Query: 368 tctccccctccatggcctcccgtatgagcgactctacctcgccccgctgtacatcgtcac 427
|||||||||||||||||||||||||||||| ||| |||||||||||| | || ||| |
Sbjct: 466 tctccccctccatggcctcccgtatgagcgcctccacctcgccccgccggacgtcgctgc 525
Query: 428 cgatctcttttccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcgg 487
||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 526 cgatctccatcccgatgccccactcggtgcgcttgtaccggcagttggtctgctgctcgg 585
Query: 488 cgaagaagggccagcacagcatgggaacgccgccgcaaatactctc 533
|||||||||||||||||| |||||| ||||||||||| || |||||
Sbjct: 586 cgaagaagggccagcacaccatgggcacgccgccgcagatgctctc 631
>gb|CW023812.1|CW023812 104_163_10432660_5_30009 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10432660, DNA
sequence
Length = 407
Score = 299 bits (151), Expect = 3e-079
Identities = 244/275 (88%)
Strand = Plus / Minus
Query: 248 aggctaggagcacctcttcgatgagcctgtctacgttgcgcatagaccgtccgtcaggcc 307
|||||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||
Sbjct: 292 aggctaggagcacctcgtcgatgagcctgtccacgttgcgcatggatcgtccgtcgggcc 233
Query: 308 ctgcagcggccacggcgctgtccctgagttcagtcacgcgccggagcatctcttgccctt 367
|| |||||||||||||| ||| |||| || ||||| |||||| ||||||| ||||||
Sbjct: 232 tcgccgcggccacggcgctttccttgagctccgtcactcgccggcgcatctcccgccctt 173
Query: 368 tctccccctccatggcctcccgtatgagcgactctacctcgccccgctgtacatcgtcac 427
|||||||||||||||||||||||||||||| ||| |||||||||||| | || ||| |
Sbjct: 172 tctccccctccatggcctcccgtatgagcgcctccacctcgccccgccggacgtcgctgc 113
Query: 428 cgatctcttttccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcgg 487
||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 112 cgatctccatcccgatgccccactcggtgcgcttgtaccggcagttggtctgctgctcgg 53
Query: 488 cgaagaagggccagcacagcatgggaacgccgccg 522
|||||||||||||||||| |||||| |||||||||
Sbjct: 52 cgaagaagggccagcacaccatgggcacgccgccg 18
>gb|BE364955.1|BE364955 PI1_22_F03.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 332
Score = 293 bits (148), Expect = 2e-077
Identities = 247/280 (88%)
Strand = Plus / Minus
Query: 385 tcccgtatgagcgactctacctcgccccgctgtacatcgtcaccgatctcttttccgatg 444
||||||||||||| ||| |||||||||||| | || ||| |||||||| | ||||||
Sbjct: 332 tcccgtatgagcgcctccacctcgccccgccggacgtcgctgccgatctccatcccgatg 273
Query: 445 ccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagcac 504
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ccccactcggtgcgcttgtaccggcagttggtctgctgctcggcgaagaagggccagcac 213
Query: 505 agcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgcgtcagg 564
| |||||| ||||||||||| || |||||||||||||||||||||||||||||||||| |
Sbjct: 212 accatgggcacgccgccgcagatgctctccagcgtggagttccacccggagtgcgtcaag 153
Query: 565 aacacccccacggcatcatgctccagcacagctgcctgcgggcaccacgtagacagcatg 624
||||||||||||||||| || |||||||| || || |||||||||||||| | |||||||
Sbjct: 152 aacacccccacggcatcgtgatccagcaccgccgcatgcgggcaccacgtgggcagcatg 93
Query: 625 cttcgtccctctgtcgcagctgagaactctggcggcagcc 664
|| || ||||| ||||| || | |||||| | ||||||||
Sbjct: 92 ctccggccctccgtcgcggccgcgaactccgacggcagcc 53
>gb|CD234388.1|CD234388 SS1_27_H07.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_27_H07_A012 3', mRNA sequence
Length = 526
Score = 252 bits (127), Expect = 6e-065
Identities = 214/243 (88%)
Strand = Plus / Minus
Query: 248 aggctaggagcacctcttcgatgagcctgtctacgttgcgcatagaccgtccgtcaggcc 307
|||||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||
Sbjct: 243 aggctaggagcacctcgtcgatgagcctgtccacgttgcgcatggatcgtccgtcgggcc 184
Query: 308 ctgcagcggccacggcgctgtccctgagttcagtcacgcgccggagcatctcttgccctt 367
|| |||||||||||||| ||| |||| || ||||| |||||| ||||||| ||||||
Sbjct: 183 tcgccgcggccacggcgctctccttgagctccgtcactcgccggcgcatctcccgccctt 124
Query: 368 tctccccctccatggcctcccgtatgagcgactctacctcgccccgctgtacatcgtcac 427
|||||||||||||||||||||||||||||| ||| |||||||||||| | || ||| |
Sbjct: 123 tctccccctccatggcctcccgtatgagcgcctccacctcgccccgccggacgtcgctgc 64
Query: 428 cgatctcttttccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcgg 487
||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 63 cgatctccatcccgatgccccactcggtgcgcttgtaccggcagttggtctgctgctcgg 4
Query: 488 cga 490
|||
Sbjct: 3 cga 1
>gb|CL175429.1|CL175429 104_381_10892447_148_31764_047 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10892447, DNA
sequence
Length = 699
Score = 250 bits (126), Expect = 2e-064
Identities = 224/256 (87%), Gaps = 3/256 (1%)
Strand = Plus / Minus
Query: 776 tgatgctcccgaagttgacatacacaacggagcgcggcgcacggccgttgagccaccgga 835
|||||||||||||||| || ||||| || ||||||||||| ||||||| |||||||||||
Sbjct: 699 tgatgctcccgaagttaacgtacacgaccgagcgcggcgcgcggccgtggagccaccgga 640
Query: 836 gcggcgcctcctgctccttccacaggttggacccaatagcagcgacaggactgttcgcct 895
||||||| |||| ||||||||||||||||||| | || || ||||| || |||| |||
Sbjct: 639 gcggcgcgtcctcctccttccacaggttggacgcgatggccgcgacggggctgtccgcgg 580
Query: 896 gcacgttgttccgcaccgtcagctggagcgggcccacggtgtagatgg---gcggcagga 952
| |||||||| |||||||||||| |||||||||| |||||||||| | ||| |||||
Sbjct: 579 ggacgttgtttcgcaccgtcagcgggagcgggccgacggtgtagaccggccgcgacagga 520
Query: 953 gcttcgccatggcagcgagcagcgtcgcgtcgagctcgtcgaaggtgttgatgaccaccg 1012
||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 519 gcttcgccatggcgtggagcggtgtcgcgtcgagctcgtcgaaggtgttgatgaccaccg 460
Query: 1013 ccgacgcctgcgacat 1028
||||||||||||||||
Sbjct: 459 ccgacgcctgcgacat 444
>gb|CD225085.1|CD225085 CCC1_38_G05.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_38_G05_A007 3', mRNA sequence
Length = 510
Score = 170 bits (86), Expect = 2e-040
Identities = 179/210 (85%)
Strand = Plus / Minus
Query: 248 aggctaggagcacctcttcgatgagcctgtctacgttgcgcatagaccgtccgtcaggcc 307
|||||||||||||||| ||||||||||||| |||||| |||| || |||||||| ||||
Sbjct: 214 aggctaggagcacctcgacgatgagcctgtccacgttgggcatggatcgtccgtcgggcc 155
Query: 308 ctgcagcggccacggcgctgtccctgagttcagtcacgcgccggagcatctcttgccctt 367
|| |||||||||||||| ||| |||| || ||||| |||||| ||||||| ||||||
Sbjct: 154 tcgccgcggccacggcgctctccttgagctccgtcactcgccggcgcatctcccgccctt 95
Query: 368 tctccccctccatggcctcccgtatgagcgactctacctcgccccgctgtacatcgtcac 427
|||||||||||||||||||||| ||||||| ||| |||||| ||||| | || ||| |
Sbjct: 94 tctccccctccatggcctcccggatgagcgcctccacctcgacccgccggacgtcgctgc 35
Query: 428 cgatctcttttccgatgccccactcggtgc 457
||||||| | |||||||||||||||||||
Sbjct: 34 cgatctccatcccgatgccccactcggtgc 5
>gb|CL188255.1|CL188255 104_404_10901465_116_32448_071 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901465, DNA
sequence
Length = 633
Score = 167 bits (84), Expect = 3e-039
Identities = 147/168 (87%)
Strand = Plus / Plus
Query: 444 gccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagca 503
||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct: 348 gccccactccgtgcacttgtaccggcagttggtctgctgctccgcgaagaacggccagca 407
Query: 504 cagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgcgtcag 563
|||||| || || ||| |||| | ||||||||||| |||||||||||||||||||||||
Sbjct: 408 cagcattggcaccccggcgcagaggctctccagcgtcgagttccacccggagtgcgtcag 467
Query: 564 gaacacccccacggcatcatgctccagcacagctgcctgcgggcacca 611
|||||| ||||| || || ||| |||||| || |||||||||||||
Sbjct: 468 gaacacgcccaccgcctcgtgccgcagcaccgcgtcctgcgggcacca 515
Score = 54.0 bits (27), Expect = 3e-005
Identities = 71/85 (83%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 648 gaactctggcggcagcccggcggagtcgccactcttgacgaggtccgggcgtacgttcca 707
|||||| ||||||||| |||||| ||||||||| |||||||||||| || | | ||||
Sbjct: 552 gaactccggcggcagcacggcggcgtcgccact---gacgaggtccggccggatgatcca 608
Query: 708 taggaagtagtagccggtgttggcc 732
||||||| || |||| ||||||||
Sbjct: 609 caggaagtcgtggccgctgttggcc 633
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 364 cctttctccccctccatggcctcccgtat 392
|||| |||||| |||||||||||||||||
Sbjct: 268 ccttcctccccgtccatggcctcccgtat 296
>gb|CW097799.1|CW097799 104_464_11002660_148_34365_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002660, DNA
sequence
Length = 614
Score = 167 bits (84), Expect = 3e-039
Identities = 147/168 (87%)
Strand = Plus / Plus
Query: 444 gccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagca 503
||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct: 108 gccccactccgtgcacttgtaccggcagttggtctgctgctccgcgaagaacggccagca 167
Query: 504 cagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgcgtcag 563
|||||| || || ||| |||| | ||||||||||| |||||||||||||||||||||||
Sbjct: 168 cagcattggcaccccggcgcagaggctctccagcgtcgagttccacccggagtgcgtcag 227
Query: 564 gaacacccccacggcatcatgctccagcacagctgcctgcgggcacca 611
|||||| ||||| || || ||| |||||| || |||||||||||||
Sbjct: 228 gaacacgcccaccgcctcgtgccgcagcaccgcgtcctgcgggcacca 275
Score = 117 bits (59), Expect = 2e-024
Identities = 130/153 (84%), Gaps = 3/153 (1%)
Strand = Plus / Plus
Query: 648 gaactctggcggcagcccggcggagtcgccactcttgacgaggtccgggcgtacgttcca 707
|||||| ||||||||| |||||| ||||||||| |||||||||||| || | | ||||
Sbjct: 312 gaactccggcggcagcacggcggcgtcgccact---gacgaggtccggccggatgatcca 368
Query: 708 taggaagtagtagccggtgttggccagcccccacgcgaactcgaccagctgctcgttgga 767
||||||| || |||| |||||||||| |||||||||||||| ||||||| ||||| ||
Sbjct: 369 caggaagtcgtggccgctgttggccagaccccacgcgaactccaccagctcctcgtcggt 428
Query: 768 catcaccgtgatgctcccgaagttgacatacac 800
||||||||||||||| ||| |||| || |||||
Sbjct: 429 catcaccgtgatgctgccgtagttcacgtacac 461
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 364 cctttctccccctccatggcctcccgtat 392
|||| |||||| |||||||||||||||||
Sbjct: 28 ccttcctccccgtccatggcctcccgtat 56
>gb|CW434797.1|CW434797 fsbb001f150k16k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f150k16, DNA
sequence
Length = 737
Score = 167 bits (84), Expect = 3e-039
Identities = 147/168 (87%)
Strand = Plus / Plus
Query: 444 gccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagca 503
||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct: 555 gccccactccgtgcacttgtaccggcagttggtctgctgctccgcgaagaacggccagca 614
Query: 504 cagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgcgtcag 563
|||||| || || ||| |||| | ||||||||||| |||||||||||||||||||||||
Sbjct: 615 cagcattggcaccccggcgcagaggctctccagcgtcgagttccacccggagtgcgtcag 674
Query: 564 gaacacccccacggcatcatgctccagcacagctgcctgcgggcacca 611
|||||| ||||| || || ||| |||||| || |||||||||||||
Sbjct: 675 gaacacgcccaccgcctcgtgccgcagcaccgcgtcctgcgggcacca 722
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 364 cctttctccccctccatggcctcccgtat 392
|||| |||||| |||||||||||||||||
Sbjct: 475 ccttcctccccgtccatggcctcccgtat 503
>gb|CX613268.1|CX613268 GABR1_7_E10.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_7_E10_A002 3', mRNA sequence
Length = 680
Score = 167 bits (84), Expect = 3e-039
Identities = 147/168 (87%)
Strand = Plus / Minus
Query: 444 gccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagca 503
||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct: 349 gccccactccgtgcacttgtaccggcagttggtctgctgctccgcgaagaacggccagca 290
Query: 504 cagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgcgtcag 563
|||||| || || ||| |||| | ||||||||||| |||||||||||||||||||||||
Sbjct: 289 cagcattggcaccccggcgcagaggctctccagcgtcgagttccacccggagtgcgtcag 230
Query: 564 gaacacccccacggcatcatgctccagcacagctgcctgcgggcacca 611
|||||| ||||| || || ||| |||||| || |||||||||||||
Sbjct: 229 gaacacgcccaccgcctcgtgccgcagcaccgcgtcctgcgggcacca 182
Score = 115 bits (58), Expect = 9e-024
Identities = 123/144 (85%), Gaps = 3/144 (2%)
Strand = Plus / Minus
Query: 648 gaactctggcggcagcccggcggagtcgccactcttgacgaggtccgggcgtacgttcca 707
|||||| ||||||||| |||||| ||||||||| |||||||||||| || | | ||||
Sbjct: 145 gaactccggcggcagcacggcggcgtcgccact---gacgaggtccggccggatgatcca 89
Query: 708 taggaagtagtagccggtgttggccagcccccacgcgaactcgaccagctgctcgttgga 767
||||||| || |||| |||||||||| |||||||||||||| ||||||| ||||| ||
Sbjct: 88 caggaagtcgtggccgctgttggccagaccccacgcgaactccaccagctcctcgtcggt 29
Query: 768 catcaccgtgatgctcccgaagtt 791
||||||||||||||| ||| ||||
Sbjct: 28 catcaccgtgatgctgccgtagtt 5
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 364 cctttctccccctccatggcctcccgtat 392
|||| |||||| |||||||||||||||||
Sbjct: 429 ccttcctccccgtccatggcctcccgtat 401
>gb|CW434530.1|CW434530 fsbb001f150e10k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f150e10, DNA
sequence
Length = 683
Score = 155 bits (78), Expect = 1e-035
Identities = 114/126 (90%)
Strand = Plus / Plus
Query: 444 gccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagca 503
||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct: 555 gccccactccgtgcacttgtaccggcagttggtctgctgctccgcgaagaacggccagca 614
Query: 504 cagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgcgtcag 563
|||||| || || ||| |||| | ||||||||||| |||||||||||||||||||||||
Sbjct: 615 cagcattggcaccccggcgcagaggctctccagcgtcgagttccacccggagtgcgtcag 674
Query: 564 gaacac 569
||||||
Sbjct: 675 gaacac 680
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 364 cctttctccccctccatggcctcccgtat 392
|||| |||||| |||||||||||||||||
Sbjct: 475 ccttcctccccgtccatggcctcccgtat 503
>gb|BE359001.1|BE359001 DG1_38_F04.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 543
Score = 139 bits (70), Expect = 6e-031
Identities = 124/142 (87%)
Strand = Plus / Minus
Query: 720 gccggtgttggccagcccccacgcgaactcgaccagctgctcgttggacatcaccgtgat 779
|||| ||||||||||||||||||||||||| |||||||||||||||| |||||| |||||
Sbjct: 420 gccgctgttggccagcccccacgcgaactccaccagctgctcgttggtcatcacggtgat 361
Query: 780 gctcccgaagttgacatacacaacggagcgcggcgcacggccgttgagccaccggagcgg 839
||| ||||||||||| || || ||||||| ||| ||||||||| |||||||| ||
Sbjct: 360 gctgccgaagttgacgtagacgacggagcccgggtcacggccgtccagccaccgcaggca 301
Query: 840 cgcctcctgctccttccacagg 861
| ||||||||||||||||||||
Sbjct: 300 ctcctcctgctccttccacagg 279
>gb|BZ349842.1|BZ349842 hr46d12.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr46d12 5', DNA sequence
Length = 572
Score = 137 bits (69), Expect = 2e-030
Identities = 105/117 (89%)
Strand = Plus / Plus
Query: 444 gccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagca 503
||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct: 456 gccccactccgtgcacttgtaccggcagttggtctgctgctccgcgaagaacggccagca 515
Query: 504 cagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgcgt 560
|||||| || || ||| |||| | ||||||||||| ||||||||||||||||||||
Sbjct: 516 cagcattggcaccccggcgcagaggctctccagcgtcgagttccacccggagtgcgt 572
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 364 cctttctccccctccatggcctcccgtat 392
|||| |||||| |||||||||||||||||
Sbjct: 376 ccttcctccccgtccatggcctcccgtat 404
>gb|CW264348.1|CW264348 104_733_11231241_148_35249_045 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231241, DNA
sequence
Length = 688
Score = 137 bits (69), Expect = 2e-030
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 444 gccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagca 503
||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 420 gccccactcggcgcacttgtaccggcagttggtctgctgctcggcgaagaatggccagca 479
Query: 504 cagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgcgtcag 563
|||||| || || ||| ||| | ||||||||||| |||||||||||| |||||||||
Sbjct: 480 cagcatcggcaccccggcgccgaggctctccagcgtcgagttccacccgctgtgcgtcag 539
Query: 564 gaaca 568
|||||
Sbjct: 540 gaaca 544
>gb|CW495508.1|CW495508 fsbb001f287e23k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f287e23, DNA
sequence
Length = 467
Score = 137 bits (69), Expect = 2e-030
Identities = 111/125 (88%)
Strand = Plus / Plus
Query: 444 gccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagca 503
||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 163 gccccactcggcgcacttgtaccggcagttggtctgctgctcggcgaagaatggccagca 222
Query: 504 cagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgcgtcag 563
|||||| || || ||| ||| | ||||||||||| |||||||||||| |||||||||
Sbjct: 223 cagcatcggcaccccggcgccgaggctctccagcgtcgagttccacccgctgtgcgtcag 282
Query: 564 gaaca 568
|||||
Sbjct: 283 gaaca 287
>gb|CB926634.1|CB926634 ABA1_3_D04.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_3_D04_A012 3', mRNA sequence
Length = 490
Score = 137 bits (69), Expect = 2e-030
Identities = 111/125 (88%)
Strand = Plus / Minus
Query: 444 gccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagca 503
||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 146 gccccactcggcgcacttgtaccggcagttggtctgctgctcggcgaagaatggccagca 87
Query: 504 cagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgcgtcag 563
|||||| || || ||| ||| | ||||||||||| |||||||||||| |||||||||
Sbjct: 86 cagcatcggcaccccggcgccgaggctctccagcgtcgagttccacccgctgtgcgtcag 27
Query: 564 gaaca 568
|||||
Sbjct: 26 gaaca 22
>gb|CL149321.1|CL149321 104_330_10777748_114_31353_068 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10777748, DNA
sequence
Length = 656
Score = 135 bits (68), Expect = 9e-030
Identities = 107/120 (89%)
Strand = Plus / Plus
Query: 456 gcacttgtatcggcagttggtctgctgctcggcgaagaagggccagcacagcatgggaac 515
||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct: 61 gcacttgtaccggcagttggtctgctgctccgcgaagaaaggccagcacagcatgggcac 120
Query: 516 gccgccgcaaatactctccagcgtggagttccacccggagtgcgtcaggaacacccccac 575
||| |||| | ||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct: 121 cccggcgcacaggctctccatggtcgagttccacccggagtgcgtcaggaacacgcccac 180
Score = 101 bits (51), Expect = 1e-019
Identities = 128/153 (83%), Gaps = 3/153 (1%)
Strand = Plus / Plus
Query: 648 gaactctggcggcagcccggcggagtcgccactcttgacgaggtccgggcgtacgttcca 707
|||||| ||||||||| |||||| |||||| |||||||||||||| || | | ||||
Sbjct: 253 gaactccggcggcagcacggcggcgtcgccg---ttgacgaggtccggccggatgatcca 309
Query: 708 taggaagtagtagccggtgttggccagcccccacgcgaactcgaccagctgctcgttgga 767
||||||| || |||| |||||||||| ||||||||||| || ||||||| |||||||
Sbjct: 310 caggaagtcgtggccgctgttggccaggccccacgcgaattccaccagctcctcgttgct 369
Query: 768 catcaccgtgatgctcccgaagttgacatacac 800
||||||||||||||| ||| |||| || |||||
Sbjct: 370 catcaccgtgatgctgccgtagttcacgtacac 402
Score = 44.1 bits (22), Expect = 0.027
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 982 tcgagctcgtcgaaggtgttga 1003
||||||||||||||||||||||
Sbjct: 600 tcgagctcgtcgaaggtgttga 621
>gb|CW355391.1|CW355391 fsbb001f020a02f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f020a02, DNA
sequence
Length = 439
Score = 131 bits (66), Expect = 1e-028
Identities = 123/142 (86%)
Strand = Plus / Plus
Query: 470 agttggtctgctgctcggcgaagaagggccagcacagcatgggaacgccgccgcaaatac 529
|||||||||||||||| |||||||| |||||||||||||| || || ||| |||| | |
Sbjct: 1 agttggtctgctgctccgcgaagaacggccagcacagcattggcaccccggcgcagaggc 60
Query: 530 tctccagcgtggagttccacccggagtgcgtcaggaacacccccacggcatcatgctcca 589
|||||||||| ||||||||||||||||||||||||||||| ||||| || || ||| ||
Sbjct: 61 tctccagcgtcgagttccacccggagtgcgtcaggaacacgcccaccgcctcgtgccgca 120
Query: 590 gcacagctgcctgcgggcacca 611
|||| || |||||||||||||
Sbjct: 121 gcaccgcgtcctgcgggcacca 142
Score = 117 bits (59), Expect = 2e-024
Identities = 130/153 (84%), Gaps = 3/153 (1%)
Strand = Plus / Plus
Query: 648 gaactctggcggcagcccggcggagtcgccactcttgacgaggtccgggcgtacgttcca 707
|||||| ||||||||| |||||| ||||||||| |||||||||||| || | | ||||
Sbjct: 179 gaactccggcggcagcacggcggcgtcgccact---gacgaggtccggccggatgatcca 235
Query: 708 taggaagtagtagccggtgttggccagcccccacgcgaactcgaccagctgctcgttgga 767
||||||| || |||| |||||||||| |||||||||||||| ||||||| ||||| ||
Sbjct: 236 caggaagtcgtggccgctgttggccagaccccacgcgaactccaccagctcctcgtcggt 295
Query: 768 catcaccgtgatgctcccgaagttgacatacac 800
||||||||||||||| ||| |||| || |||||
Sbjct: 296 catcaccgtgatgctgccgtagttcacgtacac 328
>gb|CW467955.1|CW467955 fsbb001f219n18f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f219n18, DNA
sequence
Length = 577
Score = 131 bits (66), Expect = 1e-028
Identities = 159/190 (83%)
Strand = Plus / Plus
Query: 425 caccgatctcttttccgatgccccactcggtgcacttgtatcggcagttggtctgctgct 484
|||||||||| | |||| |||||| || || | |||||| |||||||||||||||||||
Sbjct: 113 caccgatctccatcccgacgccccattctgtacgcttgtaccggcagttggtctgctgct 172
Query: 485 cggcgaagaagggccagcacagcatgggaacgccgccgcaaatactctccagcgtggagt 544
| |||||||||||||||| ||||| || || || || | || ||||| || || ||||
Sbjct: 173 ccgcgaagaagggccagctgagcattggcacccccgcggagatgctctctagggtcgagt 232
Query: 545 tccacccggagtgcgtcaggaacacccccacggcatcatgctccagcacagctgcctgcg 604
|||||||||||||||| ||||||| |||||| || || ||| |||||||||| ||||||
Sbjct: 233 tccacccggagtgcgtgaggaacagccccaccgcctcgtgcgccagcacagcctcctgcg 292
Query: 605 ggcaccacgt 614
||||||||||
Sbjct: 293 ggcaccacgt 302
Score = 127 bits (64), Expect = 2e-027
Identities = 156/186 (83%), Gaps = 3/186 (1%)
Strand = Plus / Plus
Query: 646 gagaactctggcggcagcccggcggagtcgccactcttgacgaggtccgggcgtacgttc 705
|||||||| ||||||||| |||||| ||| || |||||| |||||||| || | ||||
Sbjct: 334 gagaactccggcggcagcacggcggtgtcacc---cttgacaaggtccggccggatgttc 390
Query: 706 cataggaagtagtagccggtgttggccagcccccacgcgaactcgaccagctgctcgttg 765
|| | ||| ||||||| || |||||||||||||||||||| | |||||||||||||
Sbjct: 391 cacatgaacgggtagccgctgccagccagcccccacgcgaactccagcagctgctcgttg 450
Query: 766 gacatcaccgtgatgctcccgaagttgacatacacaacggagcgcggcgcacggccgttg 825
|||||||| |||||||||||| ||||||| ||||| ||||||| |||||| |||||| |
Sbjct: 451 gacatcacggtgatgctcccgtagttgacgtacacgacggagcccggcgcctggccgtcg 510
Query: 826 agccac 831
||||||
Sbjct: 511 agccac 516
>gb|CX618020.1|CX618020 GABR1_37_F05.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_37_F05_A002 3', mRNA sequence
Length = 674
Score = 131 bits (66), Expect = 1e-028
Identities = 102/114 (89%)
Strand = Plus / Minus
Query: 444 gccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagca 503
||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct: 114 gccccactccgtgcacttgtaccggcagttggtctgctgctccgcgaagaacggccagca 55
Query: 504 cagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtg 557
|||||| || || ||| |||| | ||||||||||| |||||||||||||||||
Sbjct: 54 cagcattggcaccccggcgcagaggctctccagcgtcgagttccacccggagtg 1
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 364 cctttctccccctccatggcctcccgtat 392
|||| |||||| |||||||||||||||||
Sbjct: 194 ccttcctccccgtccatggcctcccgtat 166
>gb|CW238816.1|CW238816 104_695_11216936_148_37417_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11216936, DNA
sequence
Length = 642
Score = 127 bits (64), Expect = 2e-027
Identities = 156/186 (83%), Gaps = 3/186 (1%)
Strand = Plus / Plus
Query: 646 gagaactctggcggcagcccggcggagtcgccactcttgacgaggtccgggcgtacgttc 705
|||||||| ||||||||| |||||| ||| || |||||| |||||||| || | ||||
Sbjct: 55 gagaactccggcggcagcacggcggtgtcacc---cttgacaaggtccggccggatgttc 111
Query: 706 cataggaagtagtagccggtgttggccagcccccacgcgaactcgaccagctgctcgttg 765
|| | ||| ||||||| || |||||||||||||||||||| | |||||||||||||
Sbjct: 112 cacatgaacgggtagccgctgccagccagcccccacgcgaactccagcagctgctcgttg 171
Query: 766 gacatcaccgtgatgctcccgaagttgacatacacaacggagcgcggcgcacggccgttg 825
|||||||| |||||||||||| ||||||| ||||| ||||||| |||||| |||||| |
Sbjct: 172 gacatcacggtgatgctcccgtagttgacgtacacgacggagcccggcgcctggccgtcg 231
Query: 826 agccac 831
||||||
Sbjct: 232 agccac 237
>gb|CW139338.1|CW139338 104_529_11135186_148_34909_007 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11135186, DNA
sequence
Length = 531
Score = 121 bits (61), Expect = 1e-025
Identities = 180/219 (82%), Gaps = 3/219 (1%)
Strand = Plus / Minus
Query: 648 gaactctggcggcagcccggcggagtcgccactcttgacgaggtccgggcgtacgttcca 707
|||||| ||||||||| ||||||||||||| ||| ||||||||||| || | ||||||
Sbjct: 348 gaactccggcggcagcacggcggagtcgcc---cttcacgaggtccggccggatgttcca 292
Query: 708 taggaagtagtagccggtgttggccagcccccacgcgaactcgaccagctgctcgttgga 767
| ||| ||| ||| |||||||||| ||||| |||||||||| ||||||| |||||
Sbjct: 291 cacgaacgggtacccgctgttggccaggccccaggcgaactcgagcagctgcgagttggt 232
Query: 768 catcaccgtgatgctcccgaagttgacatacacaacggagcgcggcgcacggccgttgag 827
||||||||||||||| ||| |||| || ||||| ||||| |||||||| |||||| |||
Sbjct: 231 catcaccgtgatgctgccgtagttcacgtacaccacggaccgcggcgcgcggccggcgag 172
Query: 828 ccaccggagcggcgcctcctgctccttccacaggttgga 866
|||| | || |||||||||||||||| ||||||||
Sbjct: 171 ccactccgggagcccctcctgctccttccagaggttgga 133
Score = 97.6 bits (49), Expect = 2e-018
Identities = 124/149 (83%)
Strand = Plus / Minus
Query: 466 cggcagttggtctgctgctcggcgaagaagggccagcacagcatgggaacgccgccgcaa 525
|||||||| ||||||||||| || ||||||||||||| |||||||| || ||| ||||
Sbjct: 530 cggcagttagtctgctgctccgcaaagaagggccagctgagcatgggcaccccggcgcag 471
Query: 526 atactctccagcgtggagttccacccggagtgcgtcaggaacacccccacggcatcatgc 585
| |||||||| || |||||||| |||||||| |||||||||||||| || || || |||
Sbjct: 470 aggctctccagtgtcgagttccagccggagtgagtcaggaacaccccgaccgcctcgtgc 411
Query: 586 tccagcacagctgcctgcgggcaccacgt 614
||||| || ||||||||||||||||
Sbjct: 410 gggagcaccgcctcctgcgggcaccacgt 382
>gb|CW372422.1|CW372422 fsbb001f048f02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f048f02, DNA
sequence
Length = 499
Score = 121 bits (61), Expect = 1e-025
Identities = 180/219 (82%), Gaps = 3/219 (1%)
Strand = Plus / Minus
Query: 648 gaactctggcggcagcccggcggagtcgccactcttgacgaggtccgggcgtacgttcca 707
|||||| ||||||||| ||||||||||||| ||| ||||||||||| || | ||||||
Sbjct: 382 gaactccggcggcagcacggcggagtcgcc---cttcacgaggtccggccggatgttcca 326
Query: 708 taggaagtagtagccggtgttggccagcccccacgcgaactcgaccagctgctcgttgga 767
| ||| ||| ||| |||||||||| ||||| |||||||||| ||||||| |||||
Sbjct: 325 cacgaacgggtacccgctgttggccaggccccaggcgaactcgagcagctgcgagttggt 266
Query: 768 catcaccgtgatgctcccgaagttgacatacacaacggagcgcggcgcacggccgttgag 827
||||||||||||||| ||| |||| || ||||| ||||| |||||||| |||||| |||
Sbjct: 265 catcaccgtgatgctgccgtagttcacgtacaccacggaccgcggcgcgcggccggcgag 206
Query: 828 ccaccggagcggcgcctcctgctccttccacaggttgga 866
|||| | || |||||||||||||||| ||||||||
Sbjct: 205 ccactccgggagcccctcctgctccttccagaggttgga 167
Score = 40.1 bits (20), Expect = 0.42
Identities = 63/76 (82%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 540 ggagttccacccggagtgc-gtcaggaacacccccacggcatcatgctccagcacagctg 598
||||||||| |||||||| |||||||||||||| || || || ||| ||||| ||
Sbjct: 491 ggagttccagccggagtggagtcaggaacaccccgaccgcctcgtgcgggagcaccgcct 432
Query: 599 cctgcgggcaccacgt 614
||||||||||||||||
Sbjct: 431 cctgcgggcaccacgt 416
>gb|CW496448.1|CW496448 fsbb001f288l08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f288l08, DNA
sequence
Length = 536
Score = 121 bits (61), Expect = 1e-025
Identities = 100/113 (88%)
Strand = Plus / Plus
Query: 456 gcacttgtatcggcagttggtctgctgctcggcgaagaagggccagcacagcatgggaac 515
||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct: 14 gcacttgtaccggcagttggtctgctgctcggcgaagaatggccagcacagcatcggcac 73
Query: 516 gccgccgcaaatactctccagcgtggagttccacccggagtgcgtcaggaaca 568
||| ||| | ||||||||||| |||||||||||| ||||||||||||||
Sbjct: 74 cccggcgccgaggctctccagcgtcgagttccacccgctgtgcgtcaggaaca 126
Score = 42.1 bits (21), Expect = 0.11
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 709 aggaagtagtagccggtgttggccagcccccacgcgaactc 749
||||||| || |||| || | ||||||||||||||||||||
Sbjct: 273 aggaagtcgtggccgctgctcgccagcccccacgcgaactc 313
>gb|CW084020.1|CW084020 104_426_10945525_116_32440_055 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10945525, DNA
sequence
Length = 644
Score = 119 bits (60), Expect = 6e-025
Identities = 114/132 (86%)
Strand = Plus / Plus
Query: 444 gccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagca 503
|||||||||||||||| ||| || | ||||||||||||||| |||||||||||||||||
Sbjct: 402 gccccactcggtgcacgcgtaccgacggttggtctgctgctccgcgaagaagggccagca 461
Query: 504 cagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgcgtcag 563
||||||||| ||||| ||| | |||||| | |||||||||||||| |||||||||
Sbjct: 462 cagcatgggcacgcccgcgctgaggctctccgtcatggagttccacccgctgtgcgtcag 521
Query: 564 gaacacccccac 575
||||||||||||
Sbjct: 522 gaacacccccac 533
>gb|CW265350.1|CW265350 104_734_11231825_148_35261_069 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11231825, DNA
sequence
Length = 563
Score = 119 bits (60), Expect = 6e-025
Identities = 114/132 (86%)
Strand = Plus / Plus
Query: 444 gccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagca 503
|||||||||||||||| ||| || | ||||||||||||||| |||||||||||||||||
Sbjct: 262 gccccactcggtgcacgcgtaccgacggttggtctgctgctccgcgaagaagggccagca 321
Query: 504 cagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgcgtcag 563
||||||||| ||||| ||| | |||||| | |||||||||||||| |||||||||
Sbjct: 322 cagcatgggcacgcccgcgctgaggctctccgtcatggagttccacccgctgtgcgtcag 381
Query: 564 gaacacccccac 575
||||||||||||
Sbjct: 382 gaacacccccac 393
Score = 50.1 bits (25), Expect = 4e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 704 tccataggaagtagtagccggtgttggccagcccccacgcgaact 748
|||| ||||||| ||||||| || | |||||||||||||||||||
Sbjct: 519 tccacaggaagtcgtagccgctgctcgccagcccccacgcgaact 563
>gb|CW278981.1|CW278981 104_753_11406838_116_35426_085 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11406838, DNA
sequence
Length = 616
Score = 119 bits (60), Expect = 6e-025
Identities = 114/132 (86%)
Strand = Plus / Minus
Query: 444 gccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagca 503
|||||||||||||||| ||| || | ||||||||||||||| |||||||||||||||||
Sbjct: 506 gccccactcggtgcacgcgtaccgacggttggtctgctgctccgcgaagaagggccagca 447
Query: 504 cagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgcgtcag 563
||||||||| ||||| ||| | |||||| | |||||||||||||| |||||||||
Sbjct: 446 cagcatgggcacgcccgcgctgaggctctccgtcatggagttccacccgctgtgcgtcag 387
Query: 564 gaacacccccac 575
||||||||||||
Sbjct: 386 gaacacccccac 375
Score = 56.0 bits (28), Expect = 7e-006
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 704 tccataggaagtagtagccggtgttggccagcccccacgcgaactcgaccag 755
|||| ||||||| ||||||| || | |||||||||||||||||||| |||||
Sbjct: 249 tccacaggaagtcgtagccgctgctcgccagcccccacgcgaactccaccag 198
>gb|CF428156.1|CF428156 PH1_13_G05.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor
cDNA clone PH1_13_G05_A002 3', mRNA sequence
Length = 538
Score = 119 bits (60), Expect = 6e-025
Identities = 132/156 (84%)
Strand = Plus / Minus
Query: 459 cttgtatcggcagttggtctgctgctcggcgaagaagggccagcacagcatgggaacgcc 518
|||||| |||||||||||||||||||| |||||||||||||||| ||||| || || ||
Sbjct: 185 cttgtaccggcagttggtctgctgctccgcgaagaagggccagctgagcattggcacccc 126
Query: 519 gccgcaaatactctccagcgtggagttccacccggagtgcgtcaggaacacccccacggc 578
|| | || ||||| || || |||||||||||||||||||| ||||||| |||||| ||
Sbjct: 125 cgcggagatgctctctagggtcgagttccacccggagtgcgtgaggaacagccccaccgc 66
Query: 579 atcatgctccagcacagctgcctgcgggcaccacgt 614
|| ||| ||||| |||| ||||||||||||||||
Sbjct: 65 ctcgtgcgccagcgcagcctcctgcgggcaccacgt 30
>gb|CX609667.1|CX609667 ANR1_14_B08.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_14_B08_A002 3', mRNA sequence
Length = 730
Score = 119 bits (60), Expect = 6e-025
Identities = 114/132 (86%)
Strand = Plus / Minus
Query: 444 gccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagca 503
|||||||||||||||| ||| || | ||||||||||||||| |||||||||||||||||
Sbjct: 389 gccccactcggtgcacgcgtaccgacggttggtctgctgctccgcgaagaagggccagca 330
Query: 504 cagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgcgtcag 563
||||||||| ||||| ||| | |||||| | |||||||||||||| |||||||||
Sbjct: 329 cagcatgggcacgcccgcgctgaggctctccgtcatggagttccacccgctgtgcgtcag 270
Query: 564 gaacacccccac 575
||||||||||||
Sbjct: 269 gaacacccccac 258
Score = 56.0 bits (28), Expect = 7e-006
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 704 tccataggaagtagtagccggtgttggccagcccccacgcgaactcgaccag 755
|||| ||||||| ||||||| || | |||||||||||||||||||| |||||
Sbjct: 132 tccacaggaagtcgtagccgctgctcgccagcccccacgcgaactccaccag 81
>gb|BZ628007.1|BZ628007 ih57b10.b1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor
genomic clone ih57b10 5', DNA sequence
Length = 640
Score = 111 bits (56), Expect = 1e-022
Identities = 146/176 (82%)
Strand = Plus / Minus
Query: 439 ccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggc 498
|||| ||||||||| || | |||||| |||||||| ||||||||||| || |||||||||
Sbjct: 364 ccgacgccccactccgtccgcttgtaccggcagttagtctgctgctccgcaaagaagggc 305
Query: 499 cagcacagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgc 558
|||| |||||||| || ||| |||| | |||||||| || |||||||| ||||||||
Sbjct: 304 cagctgagcatgggcaccccggcgcagaggctctccagtgtcgagttccagccggagtga 245
Query: 559 gtcaggaacacccccacggcatcatgctccagcacagctgcctgcgggcaccacgt 614
|||||||||||||| || || || ||| ||||| || ||||||||||||||||
Sbjct: 244 gtcaggaacaccccgaccgcctcgtgcgggagcaccgcctcctgcgggcaccacgt 189
Score = 89.7 bits (45), Expect = 5e-016
Identities = 113/135 (83%), Gaps = 3/135 (2%)
Strand = Plus / Minus
Query: 648 gaactctggcggcagcccggcggagtcgccactcttgacgaggtccgggcgtacgttcca 707
|||||| ||||||||| ||||||||||||| ||| ||||||||||| || | ||||||
Sbjct: 155 gaactccggcggcagcacggcggagtcgcc---cttcacgaggtccggccggatgttcca 99
Query: 708 taggaagtagtagccggtgttggccagcccccacgcgaactcgaccagctgctcgttgga 767
| ||| ||| ||| |||||||||| ||||| |||||||||| ||||||| |||||
Sbjct: 98 cacgaacgggtacccgctgttggccaggccccaggcgaactcgagcagctgcgagttggt 39
Query: 768 catcaccgtgatgct 782
|||||||||||||||
Sbjct: 38 catcaccgtgatgct 24
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 344 cgcgccggagcatctcttgccctttctccccctccatggcctcc 387
|||||||| |||||||| |||| |||||||| ||||||||||||
Sbjct: 459 cgcgccggcgcatctctcgccccttctccccgtccatggcctcc 416
>gb|CW200287.1|CW200287 104_625_11183983_148_36862_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183983, DNA
sequence
Length = 699
Score = 105 bits (53), Expect = 8e-021
Identities = 68/73 (93%)
Strand = Plus / Minus
Query: 720 gccggtgttggccagcccccacgcgaactcgaccagctgctcgttggacatcaccgtgat 779
|||| ||||||||||||||||||||||||| |||||||||||||||| |||||| |||||
Sbjct: 73 gccgctgttggccagcccccacgcgaactccaccagctgctcgttggtcatcacggtgat 14
Query: 780 gctcccgaagttg 792
||| |||||||||
Sbjct: 13 gctgccgaagttg 1
Score = 97.6 bits (49), Expect = 2e-018
Identities = 109/129 (84%)
Strand = Plus / Minus
Query: 439 ccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggc 498
|||| |||||||||| |||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct: 351 ccgacgccccactcgttgcactggtaccggcagttggtctgctggtcggcgaagaagggc 292
Query: 499 cagcacagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgc 558
|||| | | || ||||||||||| || |||||||||||||||||| ||| ||||
Sbjct: 291 cagctgatgaccggcacgccgccgcacatggcctccagcgtggagttccatccgctgtgc 232
Query: 559 gtcaggaac 567
|| ||||||
Sbjct: 231 gtgaggaac 223
>gb|CX618330.1|CX618330 GABR1_39_A08.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_39_A08_A002 3', mRNA sequence
Length = 681
Score = 103 bits (52), Expect = 3e-020
Identities = 130/156 (83%)
Strand = Plus / Minus
Query: 459 cttgtatcggcagttggtctgctgctcggcgaagaagggccagcacagcatgggaacgcc 518
|||||| |||||||| ||||||||||| || ||||||||||||| |||||||| || ||
Sbjct: 332 cttgtaccggcagttagtctgctgctccgcaaagaagggccagctgagcatgggcacccc 273
Query: 519 gccgcaaatactctccagcgtggagttccacccggagtgcgtcaggaacacccccacggc 578
| |||| | |||||||| || |||||||| |||||||| |||||||||||||| || ||
Sbjct: 272 ggcgcagaggctctccagtgtcgagttccagccggagtgagtcaggaacaccccgaccgc 213
Query: 579 atcatgctccagcacagctgcctgcgggcaccacgt 614
|| ||| ||||| || ||||||||||||||||
Sbjct: 212 ctcgtgcgggagcaccgcctcctgcgggcaccacgt 177
Score = 91.7 bits (46), Expect = 1e-016
Identities = 120/144 (83%), Gaps = 3/144 (2%)
Strand = Plus / Minus
Query: 648 gaactctggcggcagcccggcggagtcgccactcttgacgaggtccgggcgtacgttcca 707
|||||| ||||||||| ||||||||||||| ||| ||||||||||| || | ||||||
Sbjct: 143 gaactccggcggcagcacggcggagtcgcc---cttcacgaggtccggccggatgttcca 87
Query: 708 taggaagtagtagccggtgttggccagcccccacgcgaactcgaccagctgctcgttgga 767
| ||| ||| ||| |||||||||| ||||| |||||||||| ||||||| |||||
Sbjct: 86 cacgaacgggtacccgctgttggccaggccccaggcgaactcgagcagctgcgagttggt 27
Query: 768 catcaccgtgatgctcccgaagtt 791
||||||||||||||| ||| ||||
Sbjct: 26 catcaccgtgatgctgccgtagtt 3
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 344 cgcgccggagcatctcttgccctttctccccctccatggcctcc 387
|||||||| |||||||| |||| |||||||| ||||||||||||
Sbjct: 447 cgcgccggcgcatctctcgccccttctccccgtccatggcctcc 404
>gb|BE359082.1|BE359082 DG1_38_F04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 515
Score = 97.6 bits (49), Expect = 2e-018
Identities = 109/129 (84%)
Strand = Plus / Minus
Query: 439 ccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggc 498
|||| |||||||||| |||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct: 279 ccgacgccccactcgttgcactggtaccggcagttggtctgctggtcggcgaagaagggc 220
Query: 499 cagcacagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgc 558
|||| | | || ||||||||||| || |||||||||||||||||| ||| ||||
Sbjct: 219 cagctgatgaccggcacgccgccgcacatggcctccagcgtggagttccatccgctgtgc 160
Query: 559 gtcaggaac 567
|| ||||||
Sbjct: 159 gtgaggaac 151
>gb|BE359974.1|BE359974 DG1_60_C01.g2_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 487
Score = 97.6 bits (49), Expect = 2e-018
Identities = 109/129 (84%)
Strand = Plus / Minus
Query: 439 ccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggc 498
|||| |||||||||| |||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct: 330 ccgacgccccactcgttgcactggtaccggcagttggtctgctggtcggcgaagaagggc 271
Query: 499 cagcacagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgc 558
|||| | | || ||||||||||| || |||||||||||||||||| ||| ||||
Sbjct: 270 cagctgatgaccggcacgccgccgcacatggcctccagcgtggagttccatccgctgtgc 211
Query: 559 gtcaggaac 567
|| ||||||
Sbjct: 210 gtgaggaac 202
Score = 79.8 bits (40), Expect = 5e-013
Identities = 49/52 (94%)
Strand = Plus / Minus
Query: 720 gccggtgttggccagcccccacgcgaactcgaccagctgctcgttggacatc 771
|||| ||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 52 gccgctgttggccagcccccacgcgaactccaccagctgctcgttggtcatc 1
>gb|CW062294.1|CW062294 104_307_10521260_5_30083 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10521260, DNA
sequence
Length = 534
Score = 95.6 bits (48), Expect = 8e-018
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 744 gaactcgaccagctgctcgttggacatcaccgtgatgctcccgaagttgacatacacaac 803
|||||| | ||||||||||||||||||||| |||||||||||| ||||||| ||||| ||
Sbjct: 1 gaactccagcagctgctcgttggacatcacggtgatgctcccgtagttgacgtacacgac 60
Query: 804 ggagcgcggcgcacggccgttgagccac 831
||||| |||||| |||||| |||||||
Sbjct: 61 ggagcccggcgcctggccgtcgagccac 88
>gb|AW679257.1|AW679257 WS1_23_F01.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 498
Score = 95.6 bits (48), Expect = 8e-018
Identities = 105/124 (84%)
Strand = Plus / Minus
Query: 444 gccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggccagca 503
|||||||||| |||||| ||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 237 gccccactcgttgcactggtaccggcagttggtctgctggtcggcgaagaagggccagct 178
Query: 504 cagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgcgtcag 563
| | || ||||||||||| || |||||||||||||||||| ||| |||||| ||
Sbjct: 177 gatgaccggcacgccgccgcacatggcctccagcgtggagttccatccgctgtgcgtgag 118
Query: 564 gaac 567
||||
Sbjct: 117 gaac 114
>gb|CW203461.1|CW203461 104_631_11186033_148_37093_077 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11186033, DNA
sequence
Length = 591
Score = 91.7 bits (46), Expect = 1e-016
Identities = 112/134 (83%)
Strand = Plus / Plus
Query: 439 ccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggc 498
|||| ||||||||| |||| |||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 82 ccgacgccccactccgtgcgcttgtaccggcagttggtctgatgctccgcgaagaagggc 141
Query: 499 cagcacagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgc 558
|||| | ||| || || | |||| | ||||||||||| |||||||| ||||||||
Sbjct: 142 cagctgatcatcggcacccacgcgcagaggctctccagcgtcgagttccagccggagtgg 201
Query: 559 gtcaggaacacccc 572
|| |||||||||||
Sbjct: 202 gtgaggaacacccc 215
Score = 75.8 bits (38), Expect = 8e-012
Identities = 107/130 (82%)
Strand = Plus / Plus
Query: 683 tgacgaggtccgggcgtacgttccataggaagtagtagccggtgttggccagcccccacg 742
|||||||||||||||| | |||||| | ||| ||| ||| ||| |||||| ||||| |
Sbjct: 325 tgacgaggtccgggcggatgttccacacgaacgggtacccgctgtcggccaggccccagg 384
Query: 743 cgaactcgaccagctgctcgttggacatcaccgtgatgctcccgaagttgacatacacaa 802
||||||||| ||||||| || ||| ||||||||||||||| || |||| || ||||| |
Sbjct: 385 cgaactcgagcagctgcgcgctggtcatcaccgtgatgctgccatagttcacgtacacca 444
Query: 803 cggagcgcgg 812
|||| |||||
Sbjct: 445 cggaccgcgg 454
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 844 tcctgctccttccacaggttg 864
|||||||||||||||||||||
Sbjct: 495 tcctgctccttccacaggttg 515
>gb|CW200286.1|CW200286 104_625_11183983_116_36861_020 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183983, DNA
sequence
Length = 696
Score = 87.7 bits (44), Expect = 2e-015
Identities = 107/128 (83%)
Strand = Plus / Plus
Query: 439 ccgatgccccactcggtgcacttgtatcggcagttggtctgctgctcggcgaagaagggc 498
|||| |||||||||| |||||| ||| ||||||||||||||||| ||||||||||| |||
Sbjct: 569 ccgacgccccactcgttgcactggtaccggcagttggtctgctggtcggcgaagaaaggc 628
Query: 499 cagcacagcatgggaacgccgccgcaaatactctccagcgtggagttccacccggagtgc 558
|||| | | || ||||||||||| || |||||||||||||||||| ||| ||||
Sbjct: 629 cagctgatgaccggcacgccgccgcacatggcctccagcgtggagttccatccgctgtgc 688
Query: 559 gtcaggaa 566
|| |||||
Sbjct: 689 gtgaggaa 696
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 258,331
Number of Sequences: 832831
Number of extensions: 258331
Number of successful extensions: 74236
Number of sequences better than 0.5: 220
Number of HSP's better than 0.5 without gapping: 219
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 73679
Number of HSP's gapped (non-prelim): 515
length of query: 1086
length of database: 491,359,669
effective HSP length: 20
effective length of query: 1066
effective length of database: 474,703,049
effective search space: 506033450234
effective search space used: 506033450234
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)