BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2576652.2.4
(870 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI724233.1|AI724233 RHIZ1_7_H09.y2_A001 Rhizome1 (RHIZ1)... 728 0.0
gb|BE356061.1|BE356061 DG1_122_B07.b1_A002 Dark Grown 1 (DG... 682 0.0
gb|BE595210.1|BE595210 PI1_47_C10.b1_A002 Pathogen induced ... 678 0.0
gb|BM318248.1|BM318248 PI1_80_C05.g9_A002 Pathogen induced ... 622 e-176
gb|BE356104.1|BE356104 DG1_122_B07.g1_A002 Dark Grown 1 (DG... 620 e-176
gb|BE594899.1|BE594899 PI1_47_C10.g1_A002 Pathogen induced ... 617 e-175
gb|BE600096.1|BE600096 PI1_79_C07.b1_A002 Pathogen induced ... 553 e-156
gb|BE600178.1|BE600178 PI1_80_C05.b1_A002 Pathogen induced ... 500 e-139
gb|BM318165.1|BM318165 PI1_79_C07.g9_A002 Pathogen induced ... 420 e-116
gb|CL183302.1|CL183302 104_395_10898081_116_31918_305 Sorgh... 256 3e-066
gb|CW149327.1|CW149327 104_548_11142430_148_36291_091 Sorgh... 248 7e-064
gb|CL183301.1|CL183301 104_395_10898081_114_31917_305 Sorgh... 133 3e-029
gb|CF486594.1|CF486594 POL1_38_D04.g1_A002 Pollen Sorghum b... 98 2e-018
gb|CW319574.1|CW319574 104_812_11474558_148_35891_059 Sorgh... 92 1e-016
gb|CW149326.1|CW149326 104_548_11142430_116_36292_091 Sorgh... 90 4e-016
gb|CN129249.1|CN129249 RHOH1_34_G11.b3_A002 Acid- and alkal... 90 4e-016
gb|CN129333.1|CN129333 RHOH1_34_G11.g1_A002 Acid- and alkal... 90 4e-016
gb|BH245974.1|BH245974 pSB1549.2 S. bicolor BTx623 PstI-dig... 82 1e-013
gb|CW319573.1|CW319573 104_812_11474558_116_35887_059 Sorgh... 82 1e-013
gb|CL184654.1|CL184654 104_398_10898998_114_32367_093 Sorgh... 62 9e-008
gb|BZ694209.1|BZ694209 SP__Ba0044B21.f SP__Ba Sorghum propi... 40 0.33
gb|CW788332.1|CW788332 SP__Ba0044B21.f SP__Ba Sorghum propi... 40 0.33
gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING... 40 0.33
>gb|AI724233.1|AI724233 RHIZ1_7_H09.y2_A001 Rhizome1 (RHIZ1) Sorghum halepense cDNA, mRNA
sequence
Length = 522
Score = 728 bits (367), Expect = 0.0
Identities = 480/514 (93%), Gaps = 4/514 (0%)
Strand = Plus / Plus
Query: 63 ctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatc 122
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 8 ctgtttttgcatatgagcaaagatcctattcgcacgggagaaatagttgttttcaatgtc 67
Query: 123 gatggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacact 182
||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 68 gatggtcgtgaaattccaattgttcaccgtgtgattaaggtccatgaacgtcaggacact 127
Query: 183 gcagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gcagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatat 187
Query: 243 gcacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctacctt 302
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 188 gcacatgggcagctttggctccagcaacatcacattatgggacgtgccgtgggctacctt 247
Query: 303 ccatatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctg 362
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ccatatgttggctgggttacaattatcatgactgagaaaccatttattaagtacctgctg 307
Query: 363 attggtgcactgggcttgctggtcataacgtcgaaagattagag-tgtcaaacttc-gcg 420
||||| ||| |||||||||||||||||||||||||||||||||| || |||||||| | |
Sbjct: 308 attggcgcattgggcttgctggtcataacgtcgaaagattagagatgccaaacttcagtg 367
Query: 421 cagtatagattttgctcttatggtgcaacatcagaggttattggctttgctgcgttaaga 480
| | ||||||||||||||||||||||||| ||||||| | |||||| || |||||||||
Sbjct: 368 ccatgtagattttgctcttatggtgcaacagcagaggtcagtggcttcgcagcgttaaga 427
Query: 481 gaagccgttctgttgcaccatggatcaaacgagaatatttgtttatagac--tgagagca 538
|||||||||||||| ||||||| |||||||||||| | || ||||| || |||| |||
Sbjct: 428 gaagccgttctgttccaccatgtatcaaacgagaagaattctttatctactgtgagggca 487
Query: 539 cctgcccactaattagatagtcggttctcatcca 572
|||||||||||||| ||||||||||| |||||||
Sbjct: 488 cctgcccactaattggatagtcggttttcatcca 521
>gb|BE356061.1|BE356061 DG1_122_B07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 600
Score = 682 bits (344), Expect = 0.0
Identities = 380/392 (96%)
Strand = Plus / Plus
Query: 4 caccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcc 63
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 209 caccagttgtagtggttctctctggtagcatggagcctggatttaaaaggggtgatatcc 268
Query: 64 tgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcg 123
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 269 tgtttttgcatatgagcaaagatcctattcgcacgggagaaatagttgttttcaatgtcg 328
Query: 124 atggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactg 183
|||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct: 329 atggtcgtgaaattccaattgttcaccgtgtgattaaggtccatgaacgtcaggacactg 388
Query: 184 cagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatg 243
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 389 cagaagtggacatcctcaccaaaggtgacaataattttggggacgaccgactattatatg 448
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttc 303
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 449 cacatgggcagctttggctccagcaacatcacattatgggacgtgccgtgggctaccttc 508
Query: 304 catatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctga 363
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 catatgttggctgggttacaattatcatgactgagaaaccatttattaagtacctgctga 568
Query: 364 ttggtgcactgggcttgctggtcataacgtcg 395
|||| ||| |||||||||||||||||||||||
Sbjct: 569 ttggcgcattgggcttgctggtcataacgtcg 600
>gb|BE595210.1|BE595210 PI1_47_C10.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 580
Score = 678 bits (342), Expect = 0.0
Identities = 378/390 (96%)
Strand = Plus / Plus
Query: 4 caccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcc 63
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 191 caccagttgtagtggttctctctggtagcatggagcctggatttaaaaggggtgatatcc 250
Query: 64 tgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcg 123
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 251 tgtttttgcatatgagcaaagatcctattcgcacgggagaaatagttgttttcaatgtcg 310
Query: 124 atggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactg 183
|||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct: 311 atggtcgtgaaattccaattgttcaccgtgtgattaaggtccatgaacgtcaggacactg 370
Query: 184 cagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatg 243
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 371 cagaagtggacatcctcaccaaaggtgacaataattttggggacgaccgactattatatg 430
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttc 303
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 431 cacatgggcagctttggctccagcaacatcacattatgggacgtgccgtgggctaccttc 490
Query: 304 catatgttggctggattacaattatcatgactgagaaaccatttattaagtacctgctga 363
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 catatgttggctgggttacaattatcatgactgagaaaccatttattaagtacctgctga 550
Query: 364 ttggtgcactgggcttgctggtcataacgt 393
|||| ||| |||||||||||||||||||||
Sbjct: 551 ttggcgcattgggcttgctggtcataacgt 580
>gb|BM318248.1|BM318248 PI1_80_C05.g9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 625
Score = 622 bits (314), Expect = e-176
Identities = 439/477 (92%), Gaps = 4/477 (0%)
Strand = Plus / Plus
Query: 147 caccgcgtaattaaggtccatgaacgtcaggacactgcagaagtggacatcctcaccaaa 206
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 caccgtgtgattaaggtccatgaacgtcaggacactgcagaagtggacatcctcaccaaa 63
Query: 207 ggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctccag 266
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ggtgacaataattttggggacgaccgactattatatgcacatgggcagctttggctccag 123
Query: 267 caacatcacattatgggacgtgctgtgggctaccttccatatgttggctggattacaatt 326
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 124 caacatcacattatgggacgtgccgtgggctaccttccatatgttggctgggttacaatt 183
Query: 327 atcatgactgagaaaccatttattaagtacctgctgattggtgcactgggcttgctggtc 386
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 184 atcatgactgagaaaccatttattaagtacctgctgattggcgcattgggcttgctggtc 243
Query: 387 ataacgtcgaaagattagag-tgtcaaacttc-gcgcagtatagattttgctcttatggt 444
|||||||||||||||||||| || |||||||| | || | |||||||||||||||||||
Sbjct: 244 ataacgtcgaaagattagagatgccaaacttcagtgccatgtagattttgctcttatggt 303
Query: 445 gcaacatcagaggttattggctttgctgcgttaagagaagccgttctgttgcaccatgga 504
|||||| ||||||| | |||||| || ||||||||||||||||||||||| ||||||| |
Sbjct: 304 gcaacagcagaggtcagtggcttcgcagcgttaagagaagccgttctgttccaccatgta 363
Query: 505 tcaaacgagaatatttgtttatagac--tgagagcacctgcccactaattagatagtcgg 562
||||||||||| | || ||||| || |||| ||||||||||||||||| |||||||||
Sbjct: 364 tcaaacgagaagaattctttatctactgtgagggcacctgcccactaattggatagtcgg 423
Query: 563 ttctcatccagcatccatcttttggtatttttagcctagctaatgagttgaaccagt 619
|||||||||||||| |||||||| ||| || | | |||||||||||||||| ||||
Sbjct: 424 ttctcatccagcattcatctttttgtagttgtgccatagctaatgagttgaatcagt 480
>gb|BE356104.1|BE356104 DG1_122_B07.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 460
Score = 620 bits (313), Expect = e-176
Identities = 343/353 (97%)
Strand = Plus / Plus
Query: 4 caccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcc 63
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 108 caccagttgtagtggttctctctggtagcatggagcctggatttaaaaggggtgatatcc 167
Query: 64 tgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcg 123
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 168 tgtttttgcatatgagcaaagatcctattcgcacgggagaaatagttgttttcaatgtcg 227
Query: 124 atggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactg 183
|||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct: 228 atggtcgtgaaattccaattgttcaccgtgtgattaaggtccatgaacgtcaggacactg 287
Query: 184 cagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatg 243
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 288 cagaagtggacatcctcaccaaaggtgacaataattttggggacgaccgactattatatg 347
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttc 303
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 348 cacatgggcagctttggctccagcaacatcacattatgggacgtgccgtgggctaccttc 407
Query: 304 catatgttggctggattacaattatcatgactgagaaaccatttattaagtac 356
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 408 catatgttggctgggttacaattatcatgactgagaaaccatttattaagtac 460
>gb|BE594899.1|BE594899 PI1_47_C10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 476
Score = 617 bits (311), Expect = e-175
Identities = 341/351 (97%)
Strand = Plus / Plus
Query: 4 caccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcc 63
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 126 caccagttgtagtggttctctctggtagcatggagcctggatttaaaaggggtgatatcc 185
Query: 64 tgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcg 123
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 186 tgtttttgcatatgagcaaagatcctattcgcacgggagaaatagttgttttcaatgtcg 245
Query: 124 atggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactg 183
|||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct: 246 atggtcgtgaaattccaattgttcaccgtgtgattaaggtccatgaacgtcaggacactg 305
Query: 184 cagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatg 243
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 306 cagaagtggacatcctcaccaaaggtgacaataattttggggacgaccgactattatatg 365
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttc 303
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 366 cacatgggcagctttggctccagcaacatcacattatgggacgtgccgtgggctaccttc 425
Query: 304 catatgttggctggattacaattatcatgactgagaaaccatttattaagt 354
|||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 426 catatgttggctgggttacaattatcatgactgagaaaccatttattaagt 476
>gb|BE600096.1|BE600096 PI1_79_C07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 537
Score = 553 bits (279), Expect = e-156
Identities = 309/319 (96%)
Strand = Plus / Plus
Query: 4 caccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcc 63
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 215 caccagttgtagtggttctctctggtagcatggagcctggatttaaaaggggtgatatcc 274
Query: 64 tgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcg 123
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 275 tgtttttgcatatgagcaaagatcctattcgcacgggagaaatagttgttttcaatgtcg 334
Query: 124 atggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactg 183
|||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct: 335 atggtcgtgaaattccaattgttcaccgtgtgattaaggtccatgaacgtcaggacactg 394
Query: 184 cagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatg 243
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 395 cagaagtggacatcctcaccaaaggtgacaataattttggggacgaccgactattatatg 454
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttc 303
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 455 cacatgggcagctttggctccagcaacatcacattatgggacgtgccgtgggctaccttc 514
Query: 304 catatgttggctggattac 322
|||||||||||||| ||||
Sbjct: 515 catatgttggctgggttac 533
>gb|BE600178.1|BE600178 PI1_80_C05.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 514
Score = 500 bits (252), Expect = e-139
Identities = 288/300 (96%)
Strand = Plus / Plus
Query: 4 caccagttgtagtggttctctctggtagcatggaacctggatttaaaaggggtgatatcc 63
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 215 caccagttgtagtggttctctctggtagcatggagcctggatttaaaaggggtgatatcc 274
Query: 64 tgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgttttcaatatcg 123
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 275 tgtttttgcatatgagcaaagatcctattcgcacgggagaaatagttgttttcaatgtcg 334
Query: 124 atggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacgtcaggacactg 183
|||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct: 335 atggtcgtgaaattccaattgttcaccgtgtgattaaggtccatgaacgtcaggacactg 394
Query: 184 cagaagtggacatcctcaccaaaggtgacaataattttggggatgaccgactattatatg 243
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 395 cacaagtggacatcctcaccaaaggtgacaataattttggggacgaccgactattatatg 454
Query: 244 cacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctaccttc 303
||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 455 cacatgggcagctctggctccagcaacatcacattatgggacgtgccgggggctaccttc 514
>gb|BM318165.1|BM318165 PI1_79_C07.g9_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 511
Score = 420 bits (212), Expect = e-116
Identities = 328/363 (90%), Gaps = 4/363 (1%)
Strand = Plus / Plus
Query: 261 ctccagcaacatcacattatgggacgtgctgtgggctaccttccatatgttggctggatt 320
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 1 ctccagcaacatcacattatgggacgtgccgtgggctaccttccatatgttggctgggtt 60
Query: 321 acaattatcatgactgagaaaccatttattaagtacctgctgattggtgcactgggcttg 380
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 61 acaattatcatgactgagaaaccatttattaagtacctgctgattggcgcattgggcttg 120
Query: 381 ctggtcataacgtcgaaagattagag-tgtcaaacttc-gcgcagtatagattttgctct 438
|||||||||||||||||||||||||| || |||||||| | || | |||||||||||||
Sbjct: 121 ctggtcataacgtcgaaagattagagatgccaaacttcagtgccatgtagattttgctct 180
Query: 439 tatggtgcaacatcagaggttattggctttgctgcgttaagagaagccgttctgttgcac 498
|||||||||||| ||||||| | |||||| || ||||||||||||||||||||||| |||
Sbjct: 181 tatggtgcaacagcagaggtcagtggcttcgcagcgttaagagaagccgttctgttccac 240
Query: 499 catggatcaaacgagaatatttgtttatagac--tgagagcacctgcccactaattagat 556
|||| |||||||||||| | || ||||| || |||| ||||||||||||||||| |||
Sbjct: 241 catgtatcaaacgagaagaattctttatctactgtgagggcacctgcccactaattggat 300
Query: 557 agtcggttctcatccagcatccatcttttggtatttttagcctagctaatgagttgaacc 616
|||||||||||||||||||| |||||||| ||| || | | |||||||||||||||| |
Sbjct: 301 agtcggttctcatccagcattcatctttttgtagttgtgccatagctaatgagttgaatc 360
Query: 617 agt 619
|||
Sbjct: 361 agt 363
>gb|CL183302.1|CL183302 104_395_10898081_116_31918_305 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898081, DNA
sequence
Length = 749
Score = 256 bits (129), Expect = 3e-066
Identities = 239/272 (87%), Gaps = 4/272 (1%)
Strand = Plus / Plus
Query: 352 agtacctgctgattggtgcactgggcttgctggtcataacgtcgaaagattagag-tgtc 410
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||| || |
Sbjct: 41 agtacctgctgattggcgcattgggcttgctggtcataacgtcgaaagattagagatgcc 100
Query: 411 aaacttc-gcgcagtatagattttgctcttatggtgcaacatcagaggttattggctttg 469
||||||| | || | ||||||||||||||||||||||||| ||||||| | |||||| |
Sbjct: 101 aaacttcagtgccatgtagattttgctcttatggtgcaacagcagaggtcagtggcttcg 160
Query: 470 ctgcgttaagagaagccgttctgttgcaccatggatcaaacgagaatatttgtttataga 529
| ||||||||||||||||||||||| ||||||| |||||||||||| | || ||||| |
Sbjct: 161 cagcgttaagagaagccgttctgttccaccatgtatcaaacgagaagaattctttatcta 220
Query: 530 c--tgagagcacctgcccactaattagatagtcggttctcatccagcatccatcttttgg 587
| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct: 221 ctgtgagggcacctgcccactaattggatagtcggttctcatccagcattcatctttttg 280
Query: 588 tatttttagcctagctaatgagttgaaccagt 619
|| || | | |||||||||||||||| ||||
Sbjct: 281 tagttgtgccatagctaatgagttgaatcagt 312
>gb|CW149327.1|CW149327 104_548_11142430_148_36291_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142430, DNA
sequence
Length = 545
Score = 248 bits (125), Expect = 7e-064
Identities = 238/272 (87%), Gaps = 4/272 (1%)
Strand = Plus / Plus
Query: 352 agtacctgctgattggtgcactgggcttgctggtcataacgtcgaaagattagag-tgtc 410
|||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| || |
Sbjct: 45 agtacctgctgattggcgcattgggcttgctggtcataacgtccaaagattagagatgcc 104
Query: 411 aaacttc-gcgcagtatagattttgctcttatggtgcaacatcagaggttattggctttg 469
||||||| | || | ||||||||||||||||||||||||| ||||||| | |||||| |
Sbjct: 105 aaacttcagtgccatgtagattttgctcttatggtgcaacagcagaggtcagtggcttcg 164
Query: 470 ctgcgttaagagaagccgttctgttgcaccatggatcaaacgagaatatttgtttataga 529
| ||||||||||||||||||||||| ||||||| |||||||||||| | || ||||| |
Sbjct: 165 cagcgttaagagaagccgttctgttccaccatgtatcaaacgagaagaattctttatcta 224
Query: 530 c--tgagagcacctgcccactaattagatagtcggttctcatccagcatccatcttttgg 587
| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct: 225 ctgtgagggcacctgcccactaattggatagtcggttctcatccagcattcatctttttg 284
Query: 588 tatttttagcctagctaatgagttgaaccagt 619
|| || | | |||||||||||||||| ||||
Sbjct: 285 tagttgtgccatagctaatgagttgaatcagt 316
>gb|CL183301.1|CL183301 104_395_10898081_114_31917_305 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10898081, DNA
sequence
Length = 774
Score = 133 bits (67), Expect = 3e-029
Identities = 127/146 (86%), Gaps = 2/146 (1%)
Strand = Plus / Minus
Query: 476 taagagaagccgttctgttgcaccatggatcaaacgagaatatttgtttatagactgaga 535
||||||||||||||||||| ||||||| |||||||||||| | || ||||| |||| ||
Sbjct: 774 taagagaagccgttctgttccaccatgtatcaaacgagaagaattctttatctactgtga 715
Query: 536 g--cacctgcccactaattagatagtcggttctcatccagcatccatcttttggtatttt 593
| |||||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||
Sbjct: 714 gggcacctgcccactaattggatagtcggttctcatccagcattcatctttttgtagttg 655
Query: 594 tagcctagctaatgagttgaaccagt 619
| | |||||||||||||||| ||||
Sbjct: 654 tgccatagctaatgagttgaatcagt 629
>gb|CF486594.1|CF486594 POL1_38_D04.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_38_D04_A002 5', mRNA sequence
Length = 716
Score = 97.6 bits (49), Expect = 2e-018
Identities = 136/165 (82%)
Strand = Plus / Plus
Query: 53 gggtgatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgt 112
|||||||||||||||||| || |||| || || ||| | ||||| ||||| ||||||||
Sbjct: 121 gggtgatatcctgtttttacacatgaataaggaccctgtccgcacgggagacatagttgt 180
Query: 113 tttcaatatcgatggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacg 172
|||||||||||| |||||||| |||||||||||||| || || || ||||| || |||||
Sbjct: 181 tttcaatatcgagggccgtgatattccaattgtccatcgtgtgatcaaggttcacgaacg 240
Query: 173 tcaggacactgcagaagtggacatcctcaccaaaggtgacaataa 217
|| | | |||||| | || ||||||| ||||||||||||||
Sbjct: 241 ccatggtatggcagaatttgatgtcctcacaaaaggtgacaataa 285
Score = 91.7 bits (46), Expect = 1e-016
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 240 tatgcacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctac 299
|||||| |||||||||||||||| |||| ||| |||||||| ||||| ||||| |||||
Sbjct: 314 tatgcaaatgggcagctttggcttcagcgacagcacattattggacgggctgttggctat 373
Query: 300 cttccatatgttggctggattacaattatcatgactgagaaaccatttattaagtacctg 359
|| || |||| ||| ||| ||||||| |||||| ||||||||| | | ||||| |||
Sbjct: 374 ctgccttatgctgggtggcttacaatcgccatgacggagaaaccagtcctcaagtatctg 433
Query: 360 ctgattggtgcactgggcttgctggt 385
|| |||||||||||||| |||||||
Sbjct: 434 ctaattggtgcactggggctgctggt 459
>gb|CW319574.1|CW319574 104_812_11474558_148_35891_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474558, DNA
sequence
Length = 681
Score = 91.7 bits (46), Expect = 1e-016
Identities = 52/54 (96%)
Strand = Plus / Plus
Query: 300 cttccatatgttggctggattacaattatcatgactgagaaaccatttattaag 353
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 1 cttccatatgttggctgggttacaattatcatgactgagaagccatttattaag 54
Score = 81.8 bits (41), Expect = 1e-013
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 352 agtacctgctgattggtgcactgggcttgctggtcataacgtcgaaaga 400
|||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 291 agtacctgctgattggtgcactgggcttgctggtcataacaacgaaaga 339
>gb|CW149326.1|CW149326 104_548_11142430_116_36292_091 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11142430, DNA
sequence
Length = 654
Score = 89.7 bits (45), Expect = 4e-016
Identities = 78/89 (87%)
Strand = Plus / Minus
Query: 531 tgagagcacctgcccactaattagatagtcggttctcatccagcatccatcttttggtat 590
|||| ||||||||||||||||| ||||||| ||||||||||||||| |||||||| |||
Sbjct: 620 tgagggcacctgcccactaattggatagtcagttctcatccagcattcatcttttagtag 561
Query: 591 ttttagcctagctaatgagttgaaccagt 619
|| | | |||||||||||||||| ||||
Sbjct: 560 ttgtgccatagctaatgagttgaatcagt 532
>gb|CN129249.1|CN129249 RHOH1_34_G11.b3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_34_G11_A002 3', mRNA sequence
Length = 814
Score = 89.7 bits (45), Expect = 4e-016
Identities = 114/137 (83%)
Strand = Plus / Plus
Query: 240 tatgcacatgggcagctttggctccagcaacatcacattatgggacgtgctgtgggctac 299
|||||| |||||||||||||||| |||| ||| |||||||| ||||| ||||| |||||
Sbjct: 469 tatgcaaatgggcagctttggcttcagcgacagcacattattggacgggctgttggctat 528
Query: 300 cttccatatgttggctggattacaattatcatgactgagaaaccatttattaagtacctg 359
|| || |||| ||| ||| ||||||| |||||| ||||||||| | | ||||| |||
Sbjct: 529 ctgccttatgctgggtggcttacaatcgccatgacggagaaaccagtcctcaagtatctg 588
Query: 360 ctgattggtgcactggg 376
|| ||||||||||||||
Sbjct: 589 ctaattggtgcactggg 605
Score = 89.7 bits (45), Expect = 4e-016
Identities = 135/165 (81%)
Strand = Plus / Plus
Query: 53 gggtgatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgt 112
|||||||||||||||||| || |||| || || ||| | ||||| ||||| ||||||||
Sbjct: 276 gggtgatatcctgtttttacacatgaataaggaccctgtccgcacgggagacatagttgt 335
Query: 113 tttcaatatcgatggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacg 172
||||||||| || |||||||| |||||||||||||| || || || ||||| || |||||
Sbjct: 336 tttcaatattgagggccgtgatattccaattgtccatcgtgtgatcaaggttcacgaacg 395
Query: 173 tcaggacactgcagaagtggacatcctcaccaaaggtgacaataa 217
|| | | |||||| | || ||||||| ||||||||||||||
Sbjct: 396 ccatggtatggcagaatttgatgtcctcacaaaaggtgacaataa 440
>gb|CN129333.1|CN129333 RHOH1_34_G11.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_34_G11_A002 5', mRNA sequence
Length = 825
Score = 89.7 bits (45), Expect = 4e-016
Identities = 135/165 (81%)
Strand = Plus / Plus
Query: 53 gggtgatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagttgt 112
|||||||||||||||||| || |||| || || ||| | ||||| ||||| ||||||||
Sbjct: 608 gggtgatatcctgtttttacacatgaataaggaccctgtccgcacgggagacatagttgt 667
Query: 113 tttcaatatcgatggccgtgaaattccaattgtccaccgcgtaattaaggtccatgaacg 172
||||||||| || |||||||| |||||||||||||| || || || ||||| || |||||
Sbjct: 668 tttcaatattgagggccgtgatattccaattgtccatcgtgtgatcaaggttcacgaacg 727
Query: 173 tcaggacactgcagaagtggacatcctcaccaaaggtgacaataa 217
|| | | |||||| | || ||||||| ||||||||||||||
Sbjct: 728 ccatggtatggcagaatttgatgtcctcacaaaaggtgacaataa 772
>gb|BH245974.1|BH245974 pSB1549.2 S. bicolor BTx623 PstI-digested total genomic DNA library
Sorghum bicolor genomic clone pSB1549, DNA sequence
Length = 543
Score = 81.8 bits (41), Expect = 1e-013
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 352 agtacctgctgattggtgcactgggcttgctggtcataacgtcgaaaga 400
|||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5 agtacctgctgattggtgcactgggcttgctggtcataacaacgaaaga 53
>gb|CW319573.1|CW319573 104_812_11474558_116_35887_059 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11474558, DNA
sequence
Length = 682
Score = 81.8 bits (41), Expect = 1e-013
Identities = 47/49 (95%)
Strand = Plus / Minus
Query: 352 agtacctgctgattggtgcactgggcttgctggtcataacgtcgaaaga 400
|||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 428 agtacctgctgattggtgcactgggcttgctggtcataacaacgaaaga 380
>gb|CL184654.1|CL184654 104_398_10898998_114_32367_093 Sorghum methylation-filtered
library (LibID: 104) Sorghum bicolor genomic clone
10898998, DNA sequence
Length = 618
Score = 61.9 bits (31), Expect = 9e-008
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 12 gtagtggttctctctggtagcatggaacctggatttaaa 50
||||||||||| |||||||||||||| ||||||||||||
Sbjct: 41 gtagtggttctttctggtagcatggagcctggatttaaa 3
>gb|BZ694209.1|BZ694209 SP__Ba0044B21.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0044B21 5', DNA sequence
Length = 602
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 331 tgactgagaaaccatttatt 350
||||||||||||||||||||
Sbjct: 231 tgactgagaaaccatttatt 250
>gb|CW788332.1|CW788332 SP__Ba0044B21.f SP__Ba Sorghum propinquum genomic clone
SP__Ba0044B21 5', DNA sequence
Length = 589
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 331 tgactgagaaaccatttatt 350
||||||||||||||||||||
Sbjct: 238 tgactgagaaaccatttatt 257
>gb|AC169370.3| Sorghum bicolor clone SB_BBc0011I20, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 143922
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 723 tagacgattgttgcttttgt 742
||||||||||||||||||||
Sbjct: 22680 tagacgattgttgcttttgt 22699
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 200,916
Number of Sequences: 832831
Number of extensions: 200916
Number of successful extensions: 53036
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52962
Number of HSP's gapped (non-prelim): 63
length of query: 870
length of database: 491,359,669
effective HSP length: 20
effective length of query: 850
effective length of database: 474,703,049
effective search space: 403497591650
effective search space used: 403497591650
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)