BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2568371.2.1
(782 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW565409.1|AW565409 LG1_343_G07.g1_A002 Light Grown 1 (L... 353 2e-095
gb|CD427188.1|CD427188 SA1_18_F03.b1_A002 Salicylic acid-tr... 188 5e-046
gb|CX613088.1|CX613088 GABR1_6_E03.b1_A002 GA- or brassinol... 155 7e-036
gb|CW373940.1|CW373940 fsbb001f050i23f0 Sorghum methylation... 147 2e-033
gb|CW483603.1|CW483603 fsbb001f245f07f0 Sorghum methylation... 94 2e-017
gb|CD213346.1|CD213346 HS1_40_B09.b1_A012 Heat-shocked seed... 94 2e-017
gb|CF074214.1|CF074214 FE1_23_G11.b1_A002 Iron-deficient se... 94 2e-017
gb|BI099061.1|BI099061 IP1_37_A08.g1_A002 Immature pannicle... 86 6e-015
gb|CW026623.1|CW026623 104_252_10498051_116_30520 Sorghum m... 82 9e-014
gb|CL190999.1|CL190999 104_409_10906474_116_32497_037 Sorgh... 76 5e-012
gb|CW411521.1|CW411521 fsbb001f106l17k0 Sorghum methylation... 76 5e-012
gb|CW464011.1|CW464011 fsbb001f213a09f0 Sorghum methylation... 76 5e-012
gb|CW056868.1|CW056868 104_298_10517912_115_30157 Sorghum m... 66 5e-009
gb|BZ332309.1|BZ332309 hx26h05.b1 WGS-SbicolorF (JM107 adap... 60 3e-007
gb|BG103495.1|BG103495 RHIZ2_37_C06.g1_A003 Rhizome2 (RHIZ2... 58 1e-006
gb|AW285511.1|AW285511 LG1_241_E06.g1_A002 Light Grown 1 (L... 54 2e-005
gb|BE363123.1|BE363123 DG1_9_B09.g1_A002 Dark Grown 1 (DG1)... 54 2e-005
gb|CF071040.1|CF071040 FE1_15_B03.b1_A002 Iron-deficient se... 50 3e-004
gb|CW039030.1|CW039030 104_271_10505258_114_30387 Sorghum m... 48 0.001
gb|CW038042.1|CW038042 104_270_10504698_114_30385 Sorghum m... 40 0.30
gb|CW084202.1|CW084202 104_426_10945640_114_32375_018 Sorgh... 40 0.30
gb|CW088062.1|CW088062 104_433_10947994_116_32576_047 Sorgh... 40 0.30
gb|CW486147.1|CW486147 fsbb001f249e02k0 Sorghum methylation... 40 0.30
gb|AW678382.1|AW678382 WS1_15_H12.g1_A002 Water-stressed 1 ... 40 0.30
gb|AW745856.1|AW745856 WS1_37_D08.g1_A002 Water-stressed 1 ... 40 0.30
gb|AW746772.1|AW746772 WS1_55_C01.b1_A002 Water-stressed 1 ... 40 0.30
gb|BE358419.1|BE358419 DG1_29_C12.g1_A002 Dark Grown 1 (DG1... 40 0.30
gb|BE361870.1|BE361870 DG1_82_F12.g1_A002 Dark Grown 1 (DG1... 40 0.30
gb|BE363283.1|BE363283 WS1_61_C07.g1_A002 Water-stressed 1 ... 40 0.30
gb|BE363678.1|BE363678 WS1_64_D02.g1_A002 Water-stressed 1 ... 40 0.30
gb|BE363717.1|BE363717 WS1_69_C09.g2_A002 Water-stressed 1 ... 40 0.30
gb|BE593298.1|BE593298 WS1_100_A10.g1_A002 Water-stressed 1... 40 0.30
gb|BE597118.1|BE597118 PI1_70_H08.g1_A002 Pathogen induced ... 40 0.30
gb|BE917642.1|BE917642 OV1_6_C06.g1_A002 Ovary 1 (OV1) Sorg... 40 0.30
gb|BE917719.1|BE917719 OV1_6_C06.b1_A002 Ovary 1 (OV1) Sorg... 40 0.30
gb|CD209057.1|CD209057 HS1_45_A12.g1_A012 Heat-shocked seed... 40 0.30
gb|CD425646.1|CD425646 SA1_13_D07.g1_A002 Salicylic acid-tr... 40 0.30
gb|CD425961.1|CD425961 SA1_15_D07.g1_A002 Salicylic acid-tr... 40 0.30
gb|CD430886.1|CD430886 ETH1_5_B05.g1_A002 Ethylene-treated ... 40 0.30
gb|CD430897.1|CD430897 ETH1_5_F03.g1_A002 Ethylene-treated ... 40 0.30
gb|CN123834.1|CN123834 RHOH1_1_C01.b1_A002 Acid- and alkali... 40 0.30
gb|CN125076.1|CN125076 RHOH1_8_E10.g1_A002 Acid- and alkali... 40 0.30
gb|CN125900.1|CN125900 RHOH1_14_B11.b1_A002 Acid- and alkal... 40 0.30
gb|CN125988.1|CN125988 RHOH1_14_B11.g1_A002 Acid- and alkal... 40 0.30
>gb|AW565409.1|AW565409 LG1_343_G07.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 646
Score = 353 bits (178), Expect = 2e-095
Identities = 202/210 (96%)
Strand = Plus / Plus
Query: 74 ttctgggtgctgttccacctctaccccttcgccaagggcatcctggggaggcacggcaag 133
|||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct: 1 ttctgggtgctgttccacctctacccgttcgccaagggcctcctcgggaggcacggcaag 60
Query: 134 acccccgtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgccgtgctgtac 193
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 61 acccccgtggtggtgctcgtctggtgggcattcaccttcgtcatcaccgccgtgctctac 120
Query: 194 atcaacataccccacatccacggccccggcggcaagcacggcggcgcgatcggaaagcac 253
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atcaacatcccccacatccatggccccggcggcaagcacggcggcgcgatcggaaagcac 180
Query: 254 ggcgccgcccaccatggcaagaagttcgac 283
|||||||||||||| |||||||||||||||
Sbjct: 181 ggcgccgcccaccacggcaagaagttcgac 210
Score = 93.7 bits (47), Expect = 2e-017
Identities = 73/81 (90%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 603 aagatgtgttgatttgatttagnnnnnnnaattaccgtacccgtggtaattaaattatgt 662
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 546 aagatgtgttgatttgatttagtttttt-aattaccgtacccgtggtaattaa-ttatgt 603
Query: 663 acctacttatatatacattac 683
|||||||||||||||||||||
Sbjct: 604 acctacttatatatacattac 624
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 336 atcgtcatgcatgcacatacctgccctgatgatgat 371
||||||| ||||||||||||||||||||||||||||
Sbjct: 279 atcgtcaagcatgcacatacctgccctgatgatgat 314
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 574 agttttgtccagaaattgaaagatgtgtt 602
|||||||||||||||||||||||||||||
Sbjct: 527 agttttgtccagaaattgaaagatgtgtt 555
Score = 56.0 bits (28), Expect = 5e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 488 tttgatcgacccagcgacgtacccgcca 515
||||||||||||||||||||||||||||
Sbjct: 431 tttgatcgacccagcgacgtacccgcca 458
>gb|CD427188.1|CD427188 SA1_18_F03.b1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_18_F03_A002 3', mRNA sequence
Length = 489
Score = 188 bits (95), Expect = 5e-046
Identities = 106/110 (96%)
Strand = Plus / Plus
Query: 174 tcatcaccgccgtgctgtacatcaacataccccacatccacggccccggcggcaagcacg 233
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 1 tcatcaccgccgtgctntacatcaacatcccccacatccatggccccggcggcaagcacg 60
Query: 234 gcggcgcgatcggaaagcacggcgccgcccaccatggcaagaagttcgac 283
|||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 61 gcggcgcgatcggaaagcacggcgccgcccaccacggcaagaagttcgac 110
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 336 atcgtcatgcatgcacatacctgccctgatgatgat 371
||||||| ||||||||||||||||||||||||||||
Sbjct: 182 atcgtcaagcatgcacatacctgccctgatgatgat 217
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 574 agttttgtccagaaattgaaagatgtgtt 602
|||||||||||||||||||||||||||||
Sbjct: 430 agttttgtccagaaattgaaagatgtgtt 458
Score = 56.0 bits (28), Expect = 5e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 488 tttgatcgacccagcgacgtacccgcca 515
||||||||||||||||||||||||||||
Sbjct: 334 tttgatcgacccagcgacgtacccgcca 361
Score = 44.1 bits (22), Expect = 0.019
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 603 aagatgtgttgatttgatttag 624
||||||||||||||||||||||
Sbjct: 449 aagatgtgttgatttgatttag 470
>gb|CX613088.1|CX613088 GABR1_6_E03.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_6_E03_A002 3', mRNA sequence
Length = 518
Score = 155 bits (78), Expect = 7e-036
Identities = 87/90 (96%)
Strand = Plus / Plus
Query: 194 atcaacataccccacatccacggccccggcggcaagcacggcggcgcgatcggaaagcac 253
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcaacatcccccacatccatggccccggcggcaagcacggcggcgcgatcggaaagcac 60
Query: 254 ggcgccgcccaccatggcaagaagttcgac 283
|||||||||||||| |||||||||||||||
Sbjct: 61 ggcgccgcccaccacggcaagaagttcgac 90
Score = 79.8 bits (40), Expect = 3e-013
Identities = 73/82 (89%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 603 aagatgtgttgatttgatttagnnnnnnnaattaccgta-cccgtggtaattaaattatg 661
|||||||||||||||||||||| |||||||||| |||||||||||||| |||||
Sbjct: 426 aagatgtgttgatttgatttagtttttt-aattaccgtancccgtggtaattaa-ttatg 483
Query: 662 tacctacttatatatacattac 683
||||||||||||||||||||||
Sbjct: 484 tacctacttatatatacattac 505
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 336 atcgtcatgcatgcacatacctgccctgatgatgat 371
||||||| ||||||||||||||||||||||||||||
Sbjct: 159 atcgtcaagcatgcacatacctgccctgatgatgat 194
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 574 agttttgtccagaaattgaaagatgtgtt 602
|||||||||||||||||||||||||||||
Sbjct: 407 agttttgtccagaaattgaaagatgtgtt 435
Score = 56.0 bits (28), Expect = 5e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 488 tttgatcgacccagcgacgtacccgcca 515
||||||||||||||||||||||||||||
Sbjct: 311 tttgatcgacccagcgacgtacccgcca 338
>gb|CW373940.1|CW373940 fsbb001f050i23f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f050i23, DNA
sequence
Length = 325
Score = 147 bits (74), Expect = 2e-033
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 198 acataccccacatccacggccccggcggcaagcacggcggcgcgatcggaaagcacggcg 257
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 acatcccccacatccatggccccggcggcaagcacggcggcgcgatcggaaagcacggcg 68
Query: 258 ccgcccaccatggcaagaagttcgac 283
|||||||||| |||||||||||||||
Sbjct: 69 ccgcccaccacggcaagaagttcgac 94
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 336 atcgtcatgcatgcacatacctgccctgatgatgat 371
||||||| ||||||||||||||||||||||||||||
Sbjct: 163 atcgtcaagcatgcacatacctgccctgatgatgat 198
>gb|CW483603.1|CW483603 fsbb001f245f07f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f245f07, DNA
sequence
Length = 619
Score = 93.7 bits (47), Expect = 2e-017
Identities = 73/81 (90%), Gaps = 2/81 (2%)
Strand = Plus / Minus
Query: 603 aagatgtgttgatttgatttagnnnnnnnaattaccgtacccgtggtaattaaattatgt 662
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 300 aagatgtgttgatttgatttagtttttt-aattaccgtacccgtggtaattaa-ttatgt 243
Query: 663 acctacttatatatacattac 683
|||||||||||||||||||||
Sbjct: 242 acctacttatatatacattac 222
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 336 atcgtcatgcatgcacatacctgccctgatgatgat 371
||||||| ||||||||||||||||||||||||||||
Sbjct: 567 atcgtcaagcatgcacatacctgccctgatgatgat 532
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 574 agttttgtccagaaattgaaagatgtgtt 602
|||||||||||||||||||||||||||||
Sbjct: 319 agttttgtccagaaattgaaagatgtgtt 291
Score = 56.0 bits (28), Expect = 5e-006
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 488 tttgatcgacccagcgacgtacccgcca 515
||||||||||||||||||||||||||||
Sbjct: 415 tttgatcgacccagcgacgtacccgcca 388
>gb|CD213346.1|CD213346 HS1_40_B09.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_40_B09_A012 3', mRNA sequence
Length = 651
Score = 93.7 bits (47), Expect = 2e-017
Identities = 73/81 (90%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 603 aagatgtgttgatttgatttagnnnnnnnaattaccgtacccgtggtaattaaattatgt 662
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 320 aagatgtgttgatttgatttagtttttt-aattaccgtacccgtggtaattaa-ttatgt 377
Query: 663 acctacttatatatacattac 683
|||||||||||||||||||||
Sbjct: 378 acctacttatatatacattac 398
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 336 atcgtcatgcatgcacatacctgccctgatgatgat 371
||||||| ||||||||||||||||||||||||||||
Sbjct: 50 atcgtcaagcatgcacatacctgccctgatgatgat 85
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 574 agttttgtccagaaattgaaagatgtgtt 602
|||||||||||||||||||||||||||||
Sbjct: 301 agttttgtccagaaattgaaagatgtgtt 329
Score = 56.0 bits (28), Expect = 5e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 488 tttgatcgacccagcgacgtacccgcca 515
||||||||||||||||||||||||||||
Sbjct: 205 tttgatcgacccagcgacgtacccgcca 232
Score = 40.1 bits (20), Expect = 0.30
Identities = 51/60 (85%), Gaps = 6/60 (10%)
Strand = Plus / Plus
Query: 362 tgatgatgatatggtga----gccgcgaaggtgaagagagtacgttcccgttcatccatc 417
||||||||||||||||| |||||||||| || |||||||||| |||| ||||||||
Sbjct: 85 tgatgatgatatggtgaggcggccgcgaaggaga--agagtacgtttccgtccatccatc 142
>gb|CF074214.1|CF074214 FE1_23_G11.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_23_G11_A002 3', mRNA sequence
Length = 659
Score = 93.7 bits (47), Expect = 2e-017
Identities = 73/81 (90%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 603 aagatgtgttgatttgatttagnnnnnnnaattaccgtacccgtggtaattaaattatgt 662
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 314 aagatgtgttgatttgatttagtttttt-aattaccgtacccgtggtaattaa-ttatgt 371
Query: 663 acctacttatatatacattac 683
|||||||||||||||||||||
Sbjct: 372 acctacttatatatacattac 392
Score = 63.9 bits (32), Expect = 2e-008
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 336 atcgtcatgcatgcacatacctgccctgatgatgat 371
||||||| ||||||||||||||||||||||||||||
Sbjct: 47 atcgtcaagcatgcacatacctgccctgatgatgat 82
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 574 agttttgtccagaaattgaaagatgtgtt 602
|||||||||||||||||||||||||||||
Sbjct: 295 agttttgtccagaaattgaaagatgtgtt 323
Score = 56.0 bits (28), Expect = 5e-006
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 488 tttgatcgacccagcgacgtacccgcca 515
||||||||||||||||||||||||||||
Sbjct: 199 tttgatcgacccagcgacgtacccgcca 226
>gb|BI099061.1|BI099061 IP1_37_A08.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 334
Score = 85.7 bits (43), Expect = 6e-015
Identities = 72/81 (88%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 603 aagatgtgttgatttgatttagnnnnnnnaattaccgtacccgtggtaattaaattatgt 662
|||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct: 242 aagatgtgttgatttgatttagtttttt-aattaccgtacccggggtaattaa-ttatgt 299
Query: 663 acctacttatatatacattac 683
|||||||||||||||||||||
Sbjct: 300 acctacttatatatacattac 320
Score = 58.0 bits (29), Expect = 1e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 574 agttttgtccagaaattgaaagatgtgtt 602
|||||||||||||||||||||||||||||
Sbjct: 223 agttttgtccagaaattgaaagatgtgtt 251
Score = 44.1 bits (22), Expect = 0.019
Identities = 76/92 (82%), Gaps = 9/92 (9%)
Strand = Plus / Plus
Query: 362 tgatgatgatatggtga----gccgcgaaggtgaagagagtacgttcccgttcatccatc 417
||||||||||||||||| |||||||||| || |||||||||| |||| ||||||
Sbjct: 7 tgatgatgatatggtgaggcggccgcgaaggaga--agagtacgtttccgtccatcca-- 62
Query: 418 gtccttagtgatgcccggtgattagttgatga 449
|||||||| || || ||||||| ||||||||
Sbjct: 63 -tccttagtaatacctggtgattggttgatga 93
>gb|CW026623.1|CW026623 104_252_10498051_116_30520 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10498051, DNA
sequence
Length = 650
Score = 81.8 bits (41), Expect = 9e-014
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 56 ggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcatc 115
||||||| |||||||| |||||||||||||| |||||||||||| ||||||||||| ||
Sbjct: 95 ggcggcgccttcttcagcttctgggtgctgtgccacctctacccgttcgccaagggactc 154
Query: 116 ctggg 120
|||||
Sbjct: 155 ctggg 159
>gb|CL190999.1|CL190999 104_409_10906474_116_32497_037 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10906474, DNA
sequence
Length = 770
Score = 75.8 bits (38), Expect = 5e-012
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 461 cggcggcggcttcttcagcttctgggtgctggcgcacctctaccccttcgccaagggc 404
>gb|CW411521.1|CW411521 fsbb001f106l17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f106l17, DNA
sequence
Length = 677
Score = 75.8 bits (38), Expect = 5e-012
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 280 cggcggcggcttcttcagcttctgggtgctggcgcacctctaccccttcgccaagggc 223
>gb|CW464011.1|CW464011 fsbb001f213a09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f213a09, DNA
sequence
Length = 634
Score = 75.8 bits (38), Expect = 5e-012
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 502 cggcggcggcttcttcagcttctgggtgctggcgcacctctaccccttcgccaagggc 445
>gb|CW056868.1|CW056868 104_298_10517912_115_30157 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10517912, DNA
sequence
Length = 446
Score = 65.9 bits (33), Expect = 5e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 64 cttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 3 cttcttcagcttctgggtgctggcgcacctctaccccttcgccaagggc 51
>gb|BZ332309.1|BZ332309 hx26h05.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hx26h05 5', DNA sequence
Length = 649
Score = 60.0 bits (30), Expect = 3e-007
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 56 ggcggcgtcttcttcaacttctgggtgctgttccacctctaccc-cttcgccaagggcat 114
||||||| |||||||| ||| |||||||||| |||||||||||| ||||||||||| |
Sbjct: 595 ggcggcgccttcttcagcttttgggtgctgtgccacctctacccgtttcgccaagggact 536
Query: 115 cctggg 120
||||||
Sbjct: 535 cctggg 530
>gb|BG103495.1|BG103495 RHIZ2_37_C06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 380
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 56 ggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
||||| |||||||||| ||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 93 ggcggtgtcttcttcagcttctgggtgctggcgcacctgtacccattcgccaagggc 149
>gb|AW285511.1|AW285511 LG1_241_E06.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 620
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 62 gtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||||| ||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 236 gtcttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggc 286
>gb|BE363123.1|BE363123 DG1_9_B09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 560
Score = 54.0 bits (27), Expect = 2e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 62 gtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||||| ||||||||||||| ||||| ||||| ||||||||||||
Sbjct: 195 gtcttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggc 245
>gb|CF071040.1|CF071040 FE1_15_B03.b1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_15_B03_A002 3', mRNA sequence
Length = 505
Score = 50.1 bits (25), Expect = 3e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 62 gtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagg 110
|||||||||| ||||||||||||| ||||| ||||| ||||||||||
Sbjct: 39 gtcttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagg 87
>gb|CW039030.1|CW039030 104_271_10505258_114_30387 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10505258, DNA
sequence
Length = 675
Score = 48.1 bits (24), Expect = 0.001
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 56 ggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaaggg 111
||||||| |||||||| ||||||||||||| ||| |||||| |||||||||||
Sbjct: 332 ggcggcggcttcttcagcttctgggtgctggcgcactactacccgttcgccaaggg 387
>gb|CW038042.1|CW038042 104_270_10504698_114_30385 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10504698, DNA
sequence
Length = 648
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 51 tggccggcggcgtcttcttc 70
||||||||||||||||||||
Sbjct: 291 tggccggcggcgtcttcttc 272
>gb|CW084202.1|CW084202 104_426_10945640_114_32375_018 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10945640, DNA
sequence
Length = 623
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 220 cggcggcaagcacggcggcg 239
||||||||||||||||||||
Sbjct: 497 cggcggcaagcacggcggcg 478
>gb|CW088062.1|CW088062 104_433_10947994_116_32576_047 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10947994, DNA
sequence
Length = 648
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 13 caaggtgctggacggcgagt 32
||||||||||||||||||||
Sbjct: 645 caaggtgctggacggcgagt 626
>gb|CW486147.1|CW486147 fsbb001f249e02k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f249e02, DNA
sequence
Length = 441
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 220 cggcggcaagcacggcggcg 239
||||||||||||||||||||
Sbjct: 258 cggcggcaagcacggcggcg 239
>gb|AW678382.1|AW678382 WS1_15_H12.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 550
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 51 tggccggcggcgtcttcttc 70
||||||||||||||||||||
Sbjct: 102 tggccggcggcgtcttcttc 83
>gb|AW745856.1|AW745856 WS1_37_D08.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 549
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 51 tggccggcggcgtcttcttc 70
||||||||||||||||||||
Sbjct: 104 tggccggcggcgtcttcttc 85
>gb|AW746772.1|AW746772 WS1_55_C01.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 500
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 51 tggccggcggcgtcttcttc 70
||||||||||||||||||||
Sbjct: 194 tggccggcggcgtcttcttc 175
>gb|BE358419.1|BE358419 DG1_29_C12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 594
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 51 tggccggcggcgtcttcttc 70
||||||||||||||||||||
Sbjct: 185 tggccggcggcgtcttcttc 166
>gb|BE361870.1|BE361870 DG1_82_F12.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 590
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 51 tggccggcggcgtcttcttc 70
||||||||||||||||||||
Sbjct: 178 tggccggcggcgtcttcttc 159
>gb|BE363283.1|BE363283 WS1_61_C07.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 504
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 51 tggccggcggcgtcttcttc 70
||||||||||||||||||||
Sbjct: 172 tggccggcggcgtcttcttc 153
>gb|BE363678.1|BE363678 WS1_64_D02.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 351
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 51 tggccggcggcgtcttcttc 70
||||||||||||||||||||
Sbjct: 140 tggccggcggcgtcttcttc 121
>gb|BE363717.1|BE363717 WS1_69_C09.g2_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 651
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 51 tggccggcggcgtcttcttc 70
||||||||||||||||||||
Sbjct: 235 tggccggcggcgtcttcttc 216
>gb|BE593298.1|BE593298 WS1_100_A10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 504
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 51 tggccggcggcgtcttcttc 70
||||||||||||||||||||
Sbjct: 103 tggccggcggcgtcttcttc 84
>gb|BE597118.1|BE597118 PI1_70_H08.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 561
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 51 tggccggcggcgtcttcttc 70
||||||||||||||||||||
Sbjct: 225 tggccggcggcgtcttcttc 206
>gb|BE917642.1|BE917642 OV1_6_C06.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 541
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 51 tggccggcggcgtcttcttc 70
||||||||||||||||||||
Sbjct: 216 tggccggcggcgtcttcttc 197
>gb|BE917719.1|BE917719 OV1_6_C06.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 600
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 51 tggccggcggcgtcttcttc 70
||||||||||||||||||||
Sbjct: 292 tggccggcggcgtcttcttc 273
>gb|CD209057.1|CD209057 HS1_45_A12.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_45_A12_A012 5', mRNA sequence
Length = 584
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 tggccggcggcgtcttcttc 70
||||||||||||||||||||
Sbjct: 173 tggccggcggcgtcttcttc 192
>gb|CD425646.1|CD425646 SA1_13_D07.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_13_D07_A002 5', mRNA sequence
Length = 566
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 tggccggcggcgtcttcttc 70
||||||||||||||||||||
Sbjct: 174 tggccggcggcgtcttcttc 193
>gb|CD425961.1|CD425961 SA1_15_D07.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_15_D07_A002 5', mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 tggccggcggcgtcttcttc 70
||||||||||||||||||||
Sbjct: 174 tggccggcggcgtcttcttc 193
>gb|CD430886.1|CD430886 ETH1_5_B05.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_5_B05_A002 5', mRNA sequence
Length = 671
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 51 tggccggcggcgtcttcttc 70
||||||||||||||||||||
Sbjct: 173 tggccggcggcgtcttcttc 192
>gb|CD430897.1|CD430897 ETH1_5_F03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA
clone ETH1_5_F03_A002 5', mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 220 cggcggcaagcacggcggcg 239
||||||||||||||||||||
Sbjct: 505 cggcggcaagcacggcggcg 524
>gb|CN123834.1|CN123834 RHOH1_1_C01.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_1_C01_A002 3', mRNA sequence
Length = 510
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 220 cggcggcaagcacggcggcg 239
||||||||||||||||||||
Sbjct: 102 cggcggcaagcacggcggcg 121
>gb|CN125076.1|CN125076 RHOH1_8_E10.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_8_E10_A002 5', mRNA sequence
Length = 563
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 220 cggcggcaagcacggcggcg 239
||||||||||||||||||||
Sbjct: 503 cggcggcaagcacggcggcg 522
>gb|CN125900.1|CN125900 RHOH1_14_B11.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_14_B11_A002 3', mRNA sequence
Length = 650
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 220 cggcggcaagcacggcggcg 239
||||||||||||||||||||
Sbjct: 243 cggcggcaagcacggcggcg 262
>gb|CN125988.1|CN125988 RHOH1_14_B11.g1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_14_B11_A002 5', mRNA sequence
Length = 555
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 220 cggcggcaagcacggcggcg 239
||||||||||||||||||||
Sbjct: 502 cggcggcaagcacggcggcg 521
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 255,298
Number of Sequences: 832831
Number of extensions: 255298
Number of successful extensions: 78275
Number of sequences better than 0.5: 44
Number of HSP's better than 0.5 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78122
Number of HSP's gapped (non-prelim): 145
length of query: 782
length of database: 491,359,669
effective HSP length: 20
effective length of query: 762
effective length of database: 474,703,049
effective search space: 361723723338
effective search space used: 361723723338
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)