BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521919.2.1
(2729 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY304540.1| Sorghum bicolor starch branching enzyme IIb ... 3935 0.0
gb|BG054395.1|BG054395 OV2_3_H07.b1_A002 Ovary 2 (OV2) Sorg... 716 0.0
gb|BG054232.1|BG054232 OV2_3_H07.g1_A002 Ovary 2 (OV2) Sorg... 559 e-157
gb|BG240463.1|BG240463 OV1_30_D01.b1_A002 Ovary 1 (OV1) Sor... 553 e-155
gb|BF585594.1|BF585594 FM1_23_C08.b1_A003 Floral-Induced Me... 353 5e-095
gb|CD423046.1|CD423046 SA1_29_C06.g1_A002 Salicylic acid-tr... 323 5e-086
gb|CW288523.1|CW288523 104_767_11411997_116_35543_095 Sorgh... 280 7e-073
gb|CW414423.1|CW414423 fsbb001f114b06f0 Sorghum methylation... 278 3e-072
gb|CW288524.1|CW288524 104_767_11411997_148_35539_095 Sorgh... 266 1e-068
gb|CW342804.1|CW342804 104_844_11487075_148_36174_002 Sorgh... 266 1e-068
gb|BG273480.1|BG273480 OV2_26_C01.b1_A002 Ovary 2 (OV2) Sor... 240 6e-061
gb|CW028433.1|CW028433 104_255_10499090_114_30394 Sorghum m... 238 2e-060
gb|AY304539.1| Sorghum bicolor starch branching enzyme IIb ... 238 2e-060
gb|BG356658.1|BG356658 OV2_26_C01.g1_A002 Ovary 2 (OV2) Sor... 210 5e-052
gb|CW066392.1|CW066392 104_313_10523659_115_30149 Sorghum m... 182 1e-043
gb|CW066390.1|CW066390 104_313_10523659_114_30148 Sorghum m... 172 1e-040
gb|CW488960.1|CW488960 fsbb001f265j24f0 Sorghum methylation... 168 2e-039
gb|CW414424.1|CW414424 fsbb001f114b06k0 Sorghum methylation... 163 1e-037
gb|CW020954.1|CW020954 104_109_10409259_114_30491 Sorghum m... 149 2e-033
gb|BG239893.1|BG239893 OV1_30_D01.g1_A002 Ovary 1 (OV1) Sor... 133 1e-028
gb|CL195061.1|CL195061 104_420_10942098_114_32301_077 Sorgh... 131 4e-028
gb|BZ335717.1|BZ335717 hz26d08.g1 WGS-SbicolorF (JM107 adap... 125 2e-026
gb|BZ335716.1|BZ335716 hz26d08.b1 WGS-SbicolorF (JM107 adap... 123 9e-026
gb|CW124939.1|CW124939 104_505_11112062_148_34710_063 Sorgh... 121 4e-025
gb|CW342803.1|CW342803 104_844_11487075_116_36173_002 Sorgh... 121 4e-025
gb|CW437259.1|CW437259 fsbb001f154e17f0 Sorghum methylation... 117 6e-024
gb|CW477931.1|CW477931 fsbb001f235i08f0 Sorghum methylation... 117 6e-024
gb|CW477932.1|CW477932 fsbb001f235i08k0 Sorghum methylation... 109 1e-021
gb|CF770718.1|CF770718 DSBF1_9_H03.b1_A010 Drought-stressed... 78 5e-012
gb|CL160894.1|CL160894 104_351_10805315_116_31825_371 Sorgh... 76 2e-011
gb|CF770707.1|CF770707 DSBF1_9_G04.b1_A010 Drought-stressed... 76 2e-011
gb|CL160893.1|CL160893 104_351_10805315_114_31824_371 Sorgh... 60 1e-006
gb|CD228917.1|CD228917 CCC1_10_C07.g1_A007 Callus culture/c... 48 0.004
gb|AF169833.2| Sorghum bicolor seed starch branching enzyme... 48 0.004
gb|CW260481.1|CW260481 104_727_11228988_148_35200_044 Sorgh... 42 0.27
gb|CW488961.1|CW488961 fsbb001f265j24k0 Sorghum methylation... 42 0.27
>gb|AY304540.1| Sorghum bicolor starch branching enzyme IIb (sbeIIb) mRNA, complete
cds; nuclear gene for plastid product
Length = 2664
Score = 3935 bits (1985), Expect = 0.0
Identities = 2450/2609 (93%), Gaps = 18/2609 (0%)
Strand = Plus / Minus
Query: 44 tctatgtttaattgacaccttgaaggtcttaaatatatagagaggacaacgcagcgagat 103
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 2664 tctatgtttaattgacaccttgaaggtcttaaatatatagagatgacaacgcagcgggat 2605
Query: 104 gcatgggctttccagcatcgattaaagtatcagaaccttattgtagcatgcatgcatgca 163
| |||||||||||||| ||||| || | |||||||||||||||||| ||||||||||
Sbjct: 2604 gtctgggctttccagcaacgattgaattttcagaaccttattgtagc---catgcatgca 2548
Query: 164 tctgccggttttggaagaaggttttt------cctcacatcgacagccccacacatgccg 217
||||||||| |||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct: 2547 tctgccggtgttggcagaatgttttttttttccctcacatcgacagccccacacatgccg 2488
Query: 218 cgcagcaacgagtaccccgctatcactccactggagcatagacgacacatgttctgcttg 277
| ||||||| |||||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct: 2487 cccagcaaccagtaccttgctatcactccactggagcatagacgacgcaggttctgcttg 2428
Query: 278 gtgtataaaccgagaatgaatatggcctattatcatgcgaacagtcggcggtgaagtgct 337
|||||||||| ||||| |||| ||||| |||||||| |||||||||| ||||||||||
Sbjct: 2427 gtgtataaacagagaacgaatggggcctgttatcatgtgaacagtcggtagtgaagtgct 2368
Query: 338 cggctgcgtgatggatcctgctaaatccaccaaatagtccagcgtcggagtccaagacca 397
| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 2367 ctgctgcgtgatggatcctgccaaatccaccaaatagtccagcgtccgagtccaagacca 2308
Query: 398 ccttatacaccccaggctttcgacaaccaatacggtagtcaaaatagctgttgttgcagt 457
||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2307 ccttatacatcccaggttttcgacaaccaatacggtagtcaaaatagctgttgttacagt 2248
Query: 458 ggaagttgaacacaaataccaaatctcccttttcgaacacaatcaccttatcctcctcat 517
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 2247 ggaagttgaacacaaataccaaatctcccttttcaaacacaatcatcttatcctcctcat 2188
Query: 518 gtttccgggaaatatactggtgatcagatgtcatgaattcatatttttgctcaagatgtt 577
||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 2187 gtttccgagaaatatactggtgatcggatgtcatgaatccatatttttgctcaagatgtt 2128
Query: 578 gcattgcctgatcaaactcttgcataccatgatacctaagatagtctgcatcacccaggt 637
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 2127 gcattgcctgatcaaactcttgcataccacgatacctaagatagtccgcatcacccaggt 2068
Query: 638 caaatcttcgacgacatttgtcataactgttgttattccctggaataaacttaccacttg 697
||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 2067 caaatcttcgacggcatttgtcataactgttattattccctggaatgaacttaccacttg 2008
Query: 698 gaagtctttgcggacctcttggaaaatctatccattcaggatgtccaaactcatttccca 757
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 gaagtctttgtggacctcttggaaaatctatccattcaggatgtccaaactcatttccca 1948
Query: 758 tgaaattaagatagccctctcctcctaaacccattgtgataagtctaatcatcttatgta 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 tgaaattaagatagccctctcctcctaaacccattgtgataagtctaatcatcttatgta 1888
Query: 818 atgctatcccacgatcaatggtaggagttgaaggtctatcgagggccatgaaatcataca 877
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 1887 atgctatcccacgatcaatggtaggagttgcaggtctatcaagggccatgaaatcataca 1828
Query: 878 tatccttgtccatcaaccaaaacgcaatagtcttgtcgccgactaatgcttgatcatgac 937
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 1827 tatccttgtccatcaaccaaaatgcaatagtcttgtcaccgactaatgcttgatcatgac 1768
Query: 938 tttcagcataagttacacacttctctaaccacctcctatttgtcagtgtgtgcacaatat 997
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct: 1767 tttcagcataagttacacacttctccaaccaccttctatttgttagtgtgtgcacaatat 1708
Query: 998 cacccatcttccaagtttcatcactttgcttgagaaggtcaatccatttgtcagccacag 1057
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1707 cacccatcttccaagcttcatcactttgcttgagaaattcaatccatttgtcagccacag 1648
Query: 1058 ccatatgcatccgatagtcaaaacctaccccaccatcgtgaacaggaagggcaaatgtag 1117
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 1647 ccatgtgcatccgatagtcaaaacctaccccaccatcttgaacaggaagggcaaatgagg 1588
Query: 1118 gcattccactaacatcttcaccaatggttacagcctcaggataaagtccatgaattagat 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1587 gcattccactaacatcttcaccaatggttacagcctcaggataaagtccatgaattagat 1528
Query: 1178 catttaccagcatcaagtaaaccactgcatctacatcggtggcaaagccaaaatactcat 1237
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1527 catttacgagcatcaagtaaaccactgcatctacatcggtggcaaagccaaaatactcat 1468
Query: 1238 tgaagttccccgtaaatgttacttgtaatccgtggtgagtgtacatcatggaggtcacac 1297
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1467 tgaagctccccgtaaatgttacttgtaatccgtggtgagtgtacatcatggaggtcacac 1408
Query: 1298 catcaaaacggaaaccatcaaacttatattcctcgagccaccatctagcattggagagaa 1357
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1407 catcaaagcggaaaccatcaaacttatattcctcaagccaccatctagcattggagagaa 1348
Query: 1358 gaaatcttaaaacttcccagttcccatagttaaataggcgagaatcccacatccagtgat 1417
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 1347 gaaatcttaaaacttcccagttcccatagttgaataagcgagaatcccacatccagtgat 1288
Query: 1418 ggccacgtggaccactgtgaaagtaatgtgtatctgtaccatcaaaaccattcaacccat 1477
|||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 1287 ggcctcgtggaccactatgaaaataatgtgtatccgtaccatcaaaaccattcaacccat 1228
Query: 1478 ccagagtattacttgacgcatgactatgaaccacatccatgagaactagcaaaccaagct 1537
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1227 ccagagtattacttgacgcatgactatggaccacatccatgagaactagcaaaccaagct 1168
Query: 1538 catgtgctctatcaatcaaagacttcaattcttctggggtaccaaaacgactacttggcg 1597
|||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||| |
Sbjct: 1167 catgtgctctatcaatcatagacttcaaatcttctggagtaccaaaacgactacttggtg 1108
Query: 1598 cnnnnnnnttagttacatggtatccaaagcttccataatatgagtgctcttggattgcca 1657
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 caaaaaaattagttacatggtatccaaagcttccataatatgagtgctcttggattgcca 1048
Query: 1658 ttatttgcactgcattgtatccaagnnnnnnnattcttgggaggacttcatccctaaagt 1717
||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 1047 ttatttgcactgcattgtatccaagtttctttattcttgggaggacctcatccctaaagt 988
Query: 1718 ttacatatgtgtttatcttcggttccgggctactcattccgacatgtgtttcatatatcc 1777
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 987 ttgcatatgtgtttatcttcggttccgggctactcattccaacatgtgtttcatatatcc 928
Query: 1778 gcaatgattttggtcgtttaggttgcgcatgcctgaacacatactttacctcttcaggag 1837
||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||
Sbjct: 927 tcaatgattttggtcgtttaggtttaggatgcttgaacacatactttacctcttcaggag 868
Query: 1838 gatcataataaatcccatcatatggtatttctcctggggcctgcactgagtacttgatcc 1897
|||||||||||| |||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 867 gatcataataaagcccatcgtatggtatttctcctggagcctgtactgagtacttgatcc 808
Query: 1898 aggctggaattgaatcctttatccctgatggagtatccattctcacctttacacgagatc 1957
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 807 aggcaggaattgaatcctttatccctgatggagtatccattctcacctttacacgagttc 748
Query: 1958 catgaggaataggtgatgtaccatctgcattgttaggcagaaaaatttcccaaacaccaa 2017
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 747 catgaggaataggtgatgtaccatctgcattgttaggcagaaaaatctcccaaacaccaa 688
Query: 2018 actcatttttgctcatacgatctgcatttggatcccagttgttgaagtcacccaccaatg 2077
||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 687 actcatttttgctcataaggtctgcatttggatcccagttgttgaagtcgcccaccaatg 628
Query: 2078 ctgcagaaaatgctccaggagcccattctcgatatgtgataccttccgcgctgcgattaa 2137
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 627 ctgcagaaagtgctccaggagcccattctcgataggtgataccttccgcgctgcgattaa 568
Query: 2138 atccaaacttctcataactacgggagaaggcttccaagcctccttcatgttcatcaatgt 2197
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 567 atccaaacttctcataactacgggagaaggcttccgagcctccttcatgctcatcaatgt 508
Query: 2198 ctgaacggattcttctatagaggctgtaccgatactcaagatggtacttatagccttgca 2257
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctgaacggattctcctatagaggctgtaccgatactcaagatggtacttatagccttgca 448
Query: 2258 acatggggtcaatctggaatattttttgtccatcgcttggtggggggaccactcgaactc 2317
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 447 gcatggggtcaatctggaatattttttgtccatcgctcggtggtgggaccactcgaactc 388
Query: 2318 tgttcaaggcttgagcatcagccacaccagcaccgcacgttgtctcttcagaaatgtctg 2377
||||||||||||||||||||||||| || ||| ||| | | |||||||||| || |||||
Sbjct: 387 tgttcaaggcttgagcatcagccacgccggcatcgcgcatcgtctcttcagtaacgtctg 328
Query: 2378 gtacctccagttcatccgactggaattgagccgagtcagcccttgatgcgaggccatcat 2437
||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| || |
Sbjct: 327 gtacctccagttcatccgactggaactgagccgagtcagccttcgatgcgaggccgtcgt 268
Query: 2438 tctcgccctcaggaaccatgaccgccttcctg---gccgcggccgccgcgcgcatggccc 2494
||||| |||||| ||||| ||||||||||||| | |||||||||||||||||||||||
Sbjct: 267 tctcgtcctcagcaaccacgaccgccttcctggacgacgcggccgccgcgcgcatggccc 208
Query: 2495 cgtgcgtccccgaacatccaactcgagcaccc------cgagttaagaagaggccggtgt 2548
|||||||||| |||| |||||||| ||||||| |||||||||||| ||||||||
Sbjct: 207 cgtgcgtcccggaacctccaactctagcaccccctgcacgagttaagaaggggccggtgc 148
Query: 2549 gccggaagactagactaccctccccgccgccggtgagtcggggagcccttacggccccac 2608
||||| |||| ||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 147 gccgggagaccagactcccctcctcgccgccggtgagtcggggagcccttacggccccac 88
Query: 2609 cgagcaccgccccagaaaccccgaacgcc 2637
||||| |||| ||||| ||| ||||||||
Sbjct: 87 cgagcgccgctccagagaccgcgaacgcc 59
>gb|BG054395.1|BG054395 OV2_3_H07.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 462
Score = 716 bits (361), Expect = 0.0
Identities = 430/453 (94%)
Strand = Plus / Minus
Query: 1992 aggcagaaaaatttcccaaacaccaaactcatttttgctcatacgatctgcatttggatc 2051
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 459 aggcagaaaaatctcccaaacaccaaactcatttttgctcatacggtctgcatttggatc 400
Query: 2052 ccagttgttgaagtcacccaccaatgctgcagaaaatgctccaggagcccattctcgata 2111
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 399 ccagttgttgaagtcgcccaccaatgctgcagaaagtgctccaggagcccattctcgata 340
Query: 2112 tgtgataccttccgcgctgcgattaaatccaaacttctcataactacgggagaaggcttc 2171
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ggtgataccttccgcgctgcgattaaatccaaacttctcataactacgggagaaggcttc 280
Query: 2172 caagcctccttcatgttcatcaatgtctgaacggattcttctatagaggctgtaccgata 2231
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 279 caagcctccttcatgctcatcaatgtctgaacggattctcctatagaggctgtaccgata 220
Query: 2232 ctcaagatggtacttatagccttgcaacatggggtcaatctggaatattttttgtccatc 2291
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 219 ctcaagatggtacttatagccttgcagcatggggtcaatctggaatattttttgtccatc 160
Query: 2292 gcttggtggggggaccactcgaactctgttcaaggcttgagcatcagccacaccagcacc 2351
||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct: 159 gctcggtggtgggaccactcgaactctgttcaaggcttgagcatcagccacgccggcatc 100
Query: 2352 gcacgttgtctcttcagaaatgtctggtacctccagttcatccgactggaattgagccga 2411
|||| | |||||||||| || |||||||||||||||||||||||||||||| ||||||||
Sbjct: 99 gcacatcgtctcttcagtaacgtctggtacctccagttcatccgactggaactgagccga 40
Query: 2412 gtcagcccttgatgcgaggccatcattctcgcc 2444
|||||| | ||||||||||| || ||||||||
Sbjct: 39 gtcagcgttcgatgcgaggccgtcgttctcgcc 7
>gb|BG054232.1|BG054232 OV2_3_H07.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 497
Score = 559 bits (282), Expect = e-157
Identities = 428/475 (90%), Gaps = 10/475 (2%)
Strand = Plus / Minus
Query: 47 atgtttaattgacaccttgaaggtcttaaatatatagagaggacaacgcagcgagatgca 106
|||||||||||||| | ||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 471 atgtttaattgacatcctgaaggtcttaaatatatagagatgacaacgcagcgggatgtc 412
Query: 107 tgggctttccagcatcgattaaagtatcagaaccttattgtagcatgcatgcatgcatct 166
|||||||||||||| ||||| || | ||||||||||||||| || |||||||||||||
Sbjct: 411 tgggctttccagcaacgattgaattttcagaaccttattgt-gc---catgcatgcatct 356
Query: 167 gccggttttggaagaaggttttt------cctcacatcgacagccccacacatgccgcgc 220
|||||| |||| |||| |||||| ||||||||||||||||||||||||||||| |
Sbjct: 355 gccggtgttggcagaatgttttttttttccctcacatcgacagccccacacatgccgccc 296
Query: 221 agcaacgagtaccccgctatcactccactggagcatagacgacacatgttctgcttggtg 280
|||||| |||||| ||||||| ||| |||||||||||||||| || |||||||||||||
Sbjct: 295 agcaaccagtaccttgctatcattccgctggagcatagacgacgcaggttctgcttggtg 236
Query: 281 tataaaccgagaatgaatatggcctattatcatgcgaacagtcggcggtgaagtgctcgg 340
||||||| ||||| |||| ||||| |||||||| |||||||||| ||||||||||| |
Sbjct: 235 tataaacagagaacgaatggggcctgttatcatgtgaacagtcggtagtgaagtgctctg 176
Query: 341 ctgcgtgatggatcctgctaaatccaccaaatagtccagcgtcggagtccaagaccacct 400
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 175 ctgcgtgatggatcctgccaaatccaccaaatagtccagcgtccgagtccaagaccacct 116
Query: 401 tatacaccccaggctttcgacaaccaatacggtagtcaaaatagctgttgttgcagtgga 460
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 tatacatcccaggttttcgacaaccaatacggtagtcaaaatagctgttgttgcagtgga 56
Query: 461 agttgaacacaaataccaaatctcccttttcgaacacaatcaccttatcctcctc 515
||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||
Sbjct: 55 agttgaacacaaataccaaatctcccttttcaaacacaatcatcttatgctcctc 1
>gb|BG240463.1|BG240463 OV1_30_D01.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence
Length = 375
Score = 553 bits (279), Expect = e-155
Identities = 337/361 (93%)
Strand = Plus / Minus
Query: 1441 taatgtgtatctgtaccatcaaaaccattcaacccatccagagtattacttgacgcatga 1500
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 taatgtgtatccgtaccatcaaaaccattcaacccatccagagtattacttgacgcatga 313
Query: 1501 ctatgaaccacatccatgagaactagcaaaccaagctcatgtgctctatcaatcaaagac 1560
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 312 ctatggaccacatccatgagaactagcaaaccaagctcatgtgctctatcaatcatagac 253
Query: 1561 ttcaattcttctggggtaccaaaacgactacttggcgcnnnnnnnttagttacatggtat 1620
||||| |||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct: 252 ttcaaatcttctggagtaccaaaacgactacttggtgcaaaaaaattagttacatggtat 193
Query: 1621 ccaaagcttccataatatgagtgctcttggattgccattatttgcactgcattgtatcca 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ccaaagcttccataatatgagtgctcttggattgccattatttgcactgcattgtatcca 133
Query: 1681 agnnnnnnnattcttgggaggacttcatccctaaagtttacatatgtgtttatcttcggt 1740
|| |||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 132 agtttttttattcttgggaggacctcatccctaaagtttgcatatgtgtttatcttcggt 73
Query: 1741 tccgggctactcattccgacatgtgtttcatatatccgcaatgattttggtcgtttaggt 1800
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 72 tccgggctactcattccaacatgtgtttcatatatcctcaatgattttggtcgtttaggt 13
Query: 1801 t 1801
|
Sbjct: 12 t 12
>gb|BF585594.1|BF585594 FM1_23_C08.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 462
Score = 353 bits (178), Expect = 5e-095
Identities = 376/442 (85%)
Strand = Plus / Minus
Query: 985 gtgtgcacaatatcacccatcttccaagtttcatcactttgcttgagaaggtcaatccat 1044
|||||||| ||||||||||| |||||| ||||||||||||||| ||||| |||||||||
Sbjct: 450 gtgtgcacgatatcacccattttccaatattcatcactttgcttcagaagttcaatccat 391
Query: 1045 ttgtcagccacagccatatgcatccgatagtcaaaacctaccccaccatcgtgaacagga 1104
||||| | ||||||||||| | ||||| |||||||| || |||||||| || ||||||
Sbjct: 390 ttgtctgggacagccatatgaaggcgataatcaaaaccaacaccaccatcttggacagga 331
Query: 1105 agggcaaatgtaggcattccactaacatcttcaccaatggttacagcctcaggataaagt 1164
| ||| ||||||||||| || |||||||||||||||| |||||| || ||||||||
Sbjct: 330 atacaaaacgtaggcattccgctgacatcttcaccaatggatacagcttctggataaagc 271
Query: 1165 ccatgaattagatcatttaccagcatcaagtaaaccactgcatctacatcggtggcaaag 1224
|||||||| ||||| ||||||||||| | |||||| |||||||| ||||| || |||||
Sbjct: 270 ccatgaatgagatcgtttaccagcattaggtaaactactgcatcaacatcagtagcaaat 211
Query: 1225 ccaaaatactcattgaagttccccgtaaatgttacttgtaatccgtggtgagtgtacatc 1284
||||||||||| ||||||| || |||| ||||||||||| |||||||| ||||||
Sbjct: 210 ccaaaatactcgccatagttcccggtgaatgccacttgtaatccatggtgagtatacatc 151
Query: 1285 atggaggtcacaccatcaaaacggaaaccatcaaacttatattcctcgagccaccatcta 1344
||||||||||| |||||||| || || ||||||||||||||||| || |||||||||||
Sbjct: 150 atggaggtcaccccatcaaatcgaaatccatcaaacttatattcttcaagccaccatctt 91
Query: 1345 gcattggagagaagaaatcttaaaacttcccagttcccatagttaaataggcgagaatcc 1404
||||| || || ||| |||| ||||||||||| ||||||| || |||||||||||||||
Sbjct: 90 gcatttgacagtagatatctcaaaacttcccaactcccataattgaataggcgagaatcc 31
Query: 1405 cacatccagtgatggccacgtg 1426
|||||||| |||||||| ||||
Sbjct: 30 cacatccaatgatggccccgtg 9
>gb|CD423046.1|CD423046 SA1_29_C06.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_29_C06_A002 5', mRNA sequence
Length = 752
Score = 323 bits (163), Expect = 5e-086
Identities = 477/584 (81%)
Strand = Plus / Minus
Query: 1612 acatggtatccaaagcttccataatatgagtgctcttggattgccattatttgcactgca 1671
|||||||| ||||||||| ||||||| ||||| || |||||||||||||| || ||||||
Sbjct: 664 acatggtacccaaagcttgcataataagagtgttcctggattgccattatctgtactgca 605
Query: 1672 ttgtatccaagnnnnnnnattcttgggaggacttcatccctaaagtttacatatgtgttt 1731
||||||||||| |||||||| || || ||||| | ||||| |||| || |||
Sbjct: 604 ttgtatccaagccttttaattcttggcagcacctcatctcggaagttagcatacgtattt 545
Query: 1732 atcttcggttccgggctactcattccgacatgtgtttcatatatccgcaatgattttggt 1791
||||| |||||||| ||||||||||| | ||||| ||| |||||||||| ||| |||||
Sbjct: 544 atctttggttccggactactcattccaatatgtgattcgtatatccgcagtgactttggc 485
Query: 1792 cgtttaggttgcgcatgcctgaacacatactttacctcttcaggaggatcataataaatc 1851
|| |||||||| | || |||| ||||| || |||||||||| ||||||||||| ||
Sbjct: 484 cgcttaggttgagggtgtttgaatacatatttctcctcttcaggtggatcataatatata 425
Query: 1852 ccatcatatggtatttctcctggggcctgcactgagtacttgatccaggctggaattgaa 1911
|||| ||||||||||| ||||| || || || || |||||| ||| || ||||| |||
Sbjct: 424 ccattgtatggtatttcacctggagcttgtacagaaaacttgacccacgcaggaatggaa 365
Query: 1912 tcctttatccctgatggagtatccattctcacctttacacgagatccatgaggaataggt 1971
||||| | || ||||| |||||||| | | ||||||||| || |||||||||||||
Sbjct: 364 tccttcacaccagatggtgtatccatccgtatctttacacgtgagccatgaggaatagca 305
Query: 1972 gatgtaccatctgcattgttaggcagaaaaatttcccaaacaccaaactcatttttgctc 2031
| | |||||| || || |||||||| ||||| |||||||| ||| |||||||| || ||
Sbjct: 304 ggggaaccatcagcgttattaggcaggaaaatctcccaaacgccatactcatttctggtc 245
Query: 2032 atacgatctgcatttggatcccagttgttgaagtcacccaccaatgctgcagaaaatgct 2091
||| ||| |||||||||| |||||||||||||||||| || ||||||||||| |||||
Sbjct: 244 atagcatcagcatttggattccagttgttgaagtcacctactaatgctgcagaggatgct 185
Query: 2092 ccaggagcccattctcgatatgtgataccttccgcgctgcgattaaatccaaacttctca 2151
|||||||||||||||| ||| ||||||||||| ||||||||| ||||||||| ||| ||
Sbjct: 184 ccaggagcccattctctataagtgataccttcagcgctgcgagtaaatccaagcttttcg 125
Query: 2152 taactacgggagaaggcttccaagcctccttcatgttcatcaat 2195
|||| || || || || |||||||| |||||||||| ||||||
Sbjct: 124 taaccgcgtgaaaatgcatccaagccaccttcatgttgatcaat 81
>gb|CW288523.1|CW288523 104_767_11411997_116_35543_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411997, DNA
sequence
Length = 532
Score = 280 bits (141), Expect = 7e-073
Identities = 285/329 (86%), Gaps = 12/329 (3%)
Strand = Plus / Plus
Query: 2 aacaatcagccatcaagcattagg-aaagcgaaaaacgaaaactctatgtttaattgaca 60
||||||||| |||||||||||||| ||| ||||||| ||||| | ||||||||||||||
Sbjct: 185 aacaatcagtcatcaagcattagggaaaacgaaaaa-gaaaaggccatgtttaattgaca 243
Query: 61 ccttgaaggtcttaaatatatagagaggacaacgcagcgagatgcatgggctttccagca 120
| ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||
Sbjct: 244 tcctgaaggtcttaaatatatagagatgacaacgcagcgggatgtctgggctttccagca 303
Query: 121 tcgattaaagtatcagaaccttattgtagcatgcatgcatgcatctgccggttttggaag 180
||||| || | ||||||||||||||| || ||||||||||||||||||| |||| ||
Sbjct: 304 acgattgaattttcagaaccttattgt-gc---catgcatgcatctgccggtgttggcag 359
Query: 181 aaggttttt------cctcacatcgacagccccacacatgccgcgcagcaacgagtaccc 234
|| |||||| ||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 360 aatgttttttttttccctcacatcgacagccccacacatgccgcccagcaaccagtacct 419
Query: 235 cgctatcactccactggagcatagacgacacatgttctgcttggtgtataaaccgagaat 294
||||||| ||| |||||||||||||||| || |||||||||||||||||||| |||||
Sbjct: 420 tgctatcattccgctggagcatagacgacgcangttctgcttggtgtataaacagagaac 479
Query: 295 gaatatggcctattatcatgcgaacagtc 323
|||| ||||| |||||||| ||||||||
Sbjct: 480 gaatggggcctgttatcatgtgaacagtc 508
>gb|CW414423.1|CW414423 fsbb001f114b06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f114b06, DNA
sequence
Length = 744
Score = 278 bits (140), Expect = 3e-072
Identities = 285/329 (86%), Gaps = 12/329 (3%)
Strand = Plus / Plus
Query: 2 aacaatcagccatcaagcattagg-aaagcgaaaaacgaaaactctatgtttaattgaca 60
||||||||| |||||||||||||| ||| ||||||| ||||| | ||||||||||||||
Sbjct: 282 aacaatcagtcatcaagcattagggaaaacgaaaaa-gaaaaggccatgtttaattgaca 340
Query: 61 ccttgaaggtcttaaatatatagagaggacaacgcagcgagatgcatgggctttccagca 120
| ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||
Sbjct: 341 tcctgaaggtcttaaatatatagagatgacaacgcagcgggatgtctgggctttccagca 400
Query: 121 tcgattaaagtatcagaaccttattgtagcatgcatgcatgcatctgccggttttggaag 180
||||| || | ||||||||||||||| || ||||||||||||||||||| |||| ||
Sbjct: 401 acgattgaattttcagaaccttattgt-gc---catgcatgcatctgccggtgttggcag 456
Query: 181 aaggttttt------cctcacatcgacagccccacacatgccgcgcagcaacgagtaccc 234
|| |||||| ||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 457 aatgttttttttttccctcacatcgacagccccacacatgccgcccagcaaccagtacct 516
Query: 235 cgctatcactccactggagcatagacgacacatgttctgcttggtgtataaaccgagaat 294
||||||| ||| |||||||||||||||| || |||||||||||||||||||| |||||
Sbjct: 517 tgctatcattccgctggagcatagacgacgcaggttctgcttggtgtataaacagagaac 576
Query: 295 gaatatggcctattatcatgcgaacagtc 323
|||| ||||| |||||||| ||||||||
Sbjct: 577 gaatggggcctgttatcatgtgaacagtc 605
Score = 54.0 bits (27), Expect = 7e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 328 gtgaagtgctcggctgcgtgatggatcctgc 358
||||||||||| |||||||||||||||||||
Sbjct: 714 gtgaagtgctctgctgcgtgatggatcctgc 744
>gb|CW288524.1|CW288524 104_767_11411997_148_35539_095 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11411997, DNA
sequence
Length = 604
Score = 266 bits (134), Expect = 1e-068
Identities = 152/158 (96%)
Strand = Plus / Minus
Query: 397 accttatacaccccaggctttcgacaaccaatacggtagtcaaaatagctgttgttgcag 456
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 accttatacatcccaggttttcgacaaccaatacggtagtcaaaatagctgttgttgcag 247
Query: 457 tggaagttgaacacaaataccaaatctcccttttcgaacacaatcaccttatcctcctca 516
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 246 tggaagttgaacacaaataccaaatctcccttttcaaacacaatcatcttatcctcctca 187
Query: 517 tgtttccgggaaatatactggtgatcagatgtcatgaa 554
|||||||| ||||||||||||||||| |||||||||||
Sbjct: 186 tgtttccgagaaatatactggtgatcggatgtcatgaa 149
>gb|CW342804.1|CW342804 104_844_11487075_148_36174_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487075, DNA
sequence
Length = 705
Score = 266 bits (134), Expect = 1e-068
Identities = 152/158 (96%)
Strand = Plus / Minus
Query: 397 accttatacaccccaggctttcgacaaccaatacggtagtcaaaatagctgttgttgcag 456
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 accttatacatcccaggttttcgacaaccaatacggtagtcaaaatagctgttgttgcag 171
Query: 457 tggaagttgaacacaaataccaaatctcccttttcgaacacaatcaccttatcctcctca 516
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 170 tggaagttgaacacaaataccaaatctcccttttcaaacacaatcatcttatcctcctca 111
Query: 517 tgtttccgggaaatatactggtgatcagatgtcatgaa 554
|||||||| ||||||||||||||||| |||||||||||
Sbjct: 110 tgtttccgagaaatatactggtgatcggatgtcatgaa 73
>gb|BG273480.1|BG273480 OV2_26_C01.b1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence
Length = 155
Score = 240 bits (121), Expect = 6e-061
Identities = 141/148 (95%)
Strand = Plus / Minus
Query: 1934 ccattctcacctttacacgagatccatgaggaataggtgatgtaccatctgcattgttag 1993
||||| ||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct: 155 ccattgtcacctttacacgagttccatgagcaataggtgatgtaccatntgcattgttag 96
Query: 1994 gcagaaaaatttcccaaacaccaaactcatttttgctcatacgatctgcatttggatccc 2053
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 95 gcagaaaaatctcccaaacaccaaactcatttttgctcatacggtctgcatttggatccc 36
Query: 2054 agttgttgaagtcacccaccaatgctgc 2081
||||||||||||| ||||||||||||||
Sbjct: 35 agttgttgaagtcgcccaccaatgctgc 8
>gb|CW028433.1|CW028433 104_255_10499090_114_30394 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10499090, DNA
sequence
Length = 723
Score = 238 bits (120), Expect = 2e-060
Identities = 150/160 (93%)
Strand = Plus / Plus
Query: 2224 taccgatactcaagatggtacttatagccttgcaacatggggtcaatctggaatattttt 2283
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 473 taccgatactcaagatggtacttatagccttgcagcatggggtcaatctggaatattttt 532
Query: 2284 tgtccatcgcttggtggggggaccactcgaactctgttcaaggcttgagcatcagccaca 2343
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgtccatcgctcggtggtgggaccactcgaactctgttcaaggcttgagcatcagccacg 592
Query: 2344 ccagcaccgcacgttgtctcttcagaaatgtctggtacct 2383
|| ||| ||||| | |||||||||| || |||||||||||
Sbjct: 593 ccggcatcgcacatcgtctcttcagtaacgtctggtacct 632
>gb|AY304539.1| Sorghum bicolor starch branching enzyme IIb (sbeIIb) gene, partial
cds; nuclear gene for plastid product
Length = 4596
Score = 238 bits (120), Expect = 2e-060
Identities = 150/160 (93%)
Strand = Plus / Minus
Query: 2224 taccgatactcaagatggtacttatagccttgcaacatggggtcaatctggaatattttt 2283
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3653 taccgatactcaagatggtacttatagccttgcagcatggggtcaatctggaatattttt 3594
Query: 2284 tgtccatcgcttggtggggggaccactcgaactctgttcaaggcttgagcatcagccaca 2343
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3593 tgtccatcgctcggtggtgggaccactcgaactctgttcaaggcttgagcatcagccacg 3534
Query: 2344 ccagcaccgcacgttgtctcttcagaaatgtctggtacct 2383
|| ||| ||||| | |||||||||| || |||||||||||
Sbjct: 3533 ccggcatcgcacatcgtctcttcagtaacgtctggtacct 3494
Score = 182 bits (92), Expect = 1e-043
Identities = 98/100 (98%)
Strand = Plus / Minus
Query: 2128 ctgcgattaaatccaaacttctcataactacgggagaaggcttccaagcctccttcatgt 2187
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4274 ctgcgattaaatccaaacttctcataactacgggagaaggcttccaagcctccttcatgc 4215
Query: 2188 tcatcaatgtctgaacggattcttctatagaggctgtacc 2227
||||||||||||||||||||||| ||||||||||||||||
Sbjct: 4214 tcatcaatgtctgaacggattctcctatagaggctgtacc 4175
Score = 176 bits (89), Expect = 7e-042
Identities = 136/151 (90%), Gaps = 3/151 (1%)
Strand = Plus / Minus
Query: 2380 acctccagttcatccgactggaattgagccgagtcagcccttgatgcgaggccatcattc 2439
||||||||||||||||||||||| ||||||||||||||| | ||||||||||| || |||
Sbjct: 3261 acctccagttcatccgactggaactgagccgagtcagccttcgatgcgaggccgtcgttc 3202
Query: 2440 tcgccctcaggaaccatgaccgccttcctg---gccgcggccgccgcgcgcatggccccg 2496
||||| |||| ||||| ||||||||||||| | |||||||||||||||||||||||||
Sbjct: 3201 tcgccttcagcaaccacgaccgccttcctggacgacgcggccgccgcgcgcatggccccg 3142
Query: 2497 tgcgtccccgaacatccaactcgagcacccc 2527
|||||||| |||| |||||||| ||||||||
Sbjct: 3141 tgcgtcccggaacctccaactctagcacccc 3111
Score = 172 bits (87), Expect = 1e-040
Identities = 183/210 (87%), Gaps = 10/210 (4%)
Strand = Plus / Minus
Query: 2527 cgagttaagaagaggccggtgtgccggaagactagactaccctccccgccgccggtgagt 2586
|||||||||||| |||||||| |||||||||| ||||| |||||| ||||||||||||||
Sbjct: 3000 cgagttaagaaggggccggtgcgccggaagaccagactcccctcctcgccgccggtgagt 2941
Query: 2587 cggggagcccttacggccccaccgagcaccgccccagaaaccccgaa---cgccatc-tc 2642
||||||||||||||||||||||||||| |||| ||||| ||| |||| ||||||| ||
Sbjct: 2940 cggggagcccttacggccccaccgagcgccgctccagagaccgcgaacgccgccatcttc 2881
Query: 2643 gcct---tcgcagccggatcggatcgaactgatca--gccaatgctaaaaccccagcgac 2697
|||| ||||| ||||||||||||| |||| || | |||||||||||||||| ||||
Sbjct: 2880 gcctccgccgcaggcggatcggatcgagctgaccagtggcaatgctaaaacccca-cgac 2822
Query: 2698 cgcaagagcgaaatccgggtctgctctggg 2727
||| |||| ||||||||||||||||||||
Sbjct: 2821 cgcgcgagcaaaatccgggtctgctctggg 2792
Score = 75.8 bits (38), Expect = 2e-011
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 2088 tgctccaggagcccattctcgatatgtgataccttccgcgct 2129
|||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4390 tgctccaggagcccattctcgataggtgataccttccgcgct 4349
>gb|BG356658.1|BG356658 OV2_26_C01.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA
sequence
Length = 251
Score = 210 bits (106), Expect = 5e-052
Identities = 216/251 (86%), Gaps = 10/251 (3%)
Strand = Plus / Minus
Query: 81 tagagaggacaacgcagcgagatgcatgggctttccagcatcgattaaagtatcagaacc 140
|||||| |||||||||||| |||| |||||||||||||| ||||| || | ||||||||
Sbjct: 251 tagagatgacaacgcagcgggatgtctgggctttccagcaacgattgaattttcagaacc 192
Query: 141 ttattgtagcatgcatgcatgcatctgccggttttggaagaaggttttt------cctca 194
||||||| || ||||||||||||||||||| |||| |||| |||||| |||||
Sbjct: 191 ttattgt-gc---catgcatgcatctgccggtgttggcagaatgttttttttttccctca 136
Query: 195 catcgacagccccacacatgccgcgcagcaacgagtaccccgctatcactccactggagc 254
|||||||||||||||||||||||| ||||||| |||||| ||||||| ||| |||||||
Sbjct: 135 catcgacagccccacacatgccgcccagcaaccagtaccttgctatcattccgctggagc 76
Query: 255 atagacgacacatgttctgcttggtgtataaaccgagaatgaatatggcctattatcatg 314
||||||||| || |||||||||||||||||||| ||||| |||| ||||| ||||||||
Sbjct: 75 atagacgacgcaggttctgcttggtgtataaacagagaacgaatggggcctgttatcatg 16
Query: 315 cgaacagtcgg 325
||||||||||
Sbjct: 15 tgaacagtcgg 5
>gb|CW066392.1|CW066392 104_313_10523659_115_30149 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523659, DNA
sequence
Length = 318
Score = 182 bits (92), Expect = 1e-043
Identities = 98/100 (98%)
Strand = Plus / Plus
Query: 2128 ctgcgattaaatccaaacttctcataactacgggagaaggcttccaagcctccttcatgt 2187
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ctgcgattaaatccaaacttctcataactacgggagaaggcttccaagcctccttcatgc 169
Query: 2188 tcatcaatgtctgaacggattcttctatagaggctgtacc 2227
||||||||||||||||||||||| ||||||||||||||||
Sbjct: 170 tcatcaatgtctgaacggattctcctatagaggctgtacc 209
Score = 61.9 bits (31), Expect = 3e-007
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 2095 ggagcccattctcgatatgtgataccttccgcgct 2129
||||||||||||||||| |||||||||||||||||
Sbjct: 1 ggagcccattctcgataggtgataccttccgcgct 35
>gb|CW066390.1|CW066390 104_313_10523659_114_30148 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10523659, DNA
sequence
Length = 587
Score = 172 bits (87), Expect = 1e-040
Identities = 183/210 (87%), Gaps = 10/210 (4%)
Strand = Plus / Minus
Query: 2527 cgagttaagaagaggccggtgtgccggaagactagactaccctccccgccgccggtgagt 2586
|||||||||||| |||||||| |||||||||| ||||| |||||| ||||||||||||||
Sbjct: 229 cgagttaagaaggggccggtgcgccggaagaccagactcccctcctcgccgccggtgagt 170
Query: 2587 cggggagcccttacggccccaccgagcaccgccccagaaaccccgaa---cgccatc-tc 2642
||||||||||||||||||||||||||| |||| ||||| ||| |||| ||||||| ||
Sbjct: 169 cggggagcccttacggccccaccgagcgccgctccagagaccgcgaacgccgccatcttc 110
Query: 2643 gcct---tcgcagccggatcggatcgaactgatca--gccaatgctaaaaccccagcgac 2697
|||| ||||| ||||||||||||| |||| || | |||||||||||||||| ||||
Sbjct: 109 gcctccgccgcaggcggatcggatcgagctgaccagtggcaatgctaaaacccca-cgac 51
Query: 2698 cgcaagagcgaaatccgggtctgctctggg 2727
||| |||| ||||||||||||||||||||
Sbjct: 50 cgcgcgagcaaaatccgggtctgctctggg 21
Score = 168 bits (85), Expect = 2e-039
Identities = 135/151 (89%), Gaps = 3/151 (1%)
Strand = Plus / Minus
Query: 2380 acctccagttcatccgactggaattgagccgagtcagcccttgatgcgaggccatcattc 2439
||||||||||||||||||||||| ||||||||||||||| | ||||||||||| || |||
Sbjct: 490 acctccagttcatccgactggaactgagccgagtcagccttcgatgcgaggccgtcgttc 431
Query: 2440 tcgccctcaggaaccatgaccgccttcctg---gccgcggccgccgcgcgcatggccccg 2496
||||| || | ||||| ||||||||||||| | |||||||||||||||||||||||||
Sbjct: 430 tcgccttcggcaaccacgaccgccttcctggacgacgcggccgccgcgcgcatggccccg 371
Query: 2497 tgcgtccccgaacatccaactcgagcacccc 2527
|||||||| |||| |||||||| ||||||||
Sbjct: 370 tgcgtcccggaacctccaactctagcacccc 340
>gb|CW488960.1|CW488960 fsbb001f265j24f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f265j24, DNA
sequence
Length = 568
Score = 168 bits (85), Expect = 2e-039
Identities = 135/151 (89%), Gaps = 3/151 (1%)
Strand = Plus / Plus
Query: 2380 acctccagttcatccgactggaattgagccgagtcagcccttgatgcgaggccatcattc 2439
||||||||||||||||||||||| ||||||||||||||| | ||||||||||| || |||
Sbjct: 55 acctccagttcatccgactggaactgagccgagtcagccttcgatgcgaggccgtcgttc 114
Query: 2440 tcgccctcaggaaccatgaccgccttcctg---gccgcggccgccgcgcgcatggccccg 2496
||||| || | ||||| ||||||||||||| | |||||||||||||||||||||||||
Sbjct: 115 tcgccttcggcaaccacgaccgccttcctggacgacgcggccgccgcgcgcatggccccg 174
Query: 2497 tgcgtccccgaacatccaactcgagcacccc 2527
|||||||| |||| |||||||| ||||||||
Sbjct: 175 tgcgtcccggaacctccaactctagcacccc 205
Score = 167 bits (84), Expect = 7e-039
Identities = 183/211 (86%), Gaps = 10/211 (4%)
Strand = Plus / Plus
Query: 2527 cgagttaagaagaggccggtgtgccggaagactagactaccctccccgccgccggtgagt 2586
|||||||||||| |||||||| |||||||||| ||||| |||||| ||||||||||||||
Sbjct: 316 cgagttaagaaggggccggtgcgccggaagaccagactcccctcctcgccgccggtgagt 375
Query: 2587 cggggagcccttacggccccaccgagcaccgccccagaaaccccgaa---cgccatc-tc 2642
||||||||||||||||||||||||||| |||| ||||| ||| |||| ||||||| ||
Sbjct: 376 cggggagcccttacggccccaccgagcgccgctccagagaccgcgaacgccgccatcttc 435
Query: 2643 gcct---tcgcagccggatcggatcgaactgatca--gccaatgctaaaaccccagcgac 2697
|||| ||||| ||||||||||||| |||| || | |||||||||||||||| ||||
Sbjct: 436 gcctccgccgcaggcggatcggatcgagctgaccagtggcaatgctaaaacccca-cgac 494
Query: 2698 cgcaagagcgaaatccgggtctgctctgggc 2728
||| |||| ||||||||| |||||||||||
Sbjct: 495 cgcgcgagcaaaatccgggcctgctctgggc 525
>gb|CW414424.1|CW414424 fsbb001f114b06k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f114b06, DNA
sequence
Length = 620
Score = 163 bits (82), Expect = 1e-037
Identities = 150/173 (86%), Gaps = 6/173 (3%)
Strand = Plus / Minus
Query: 157 gcatgcatctgccggttttggaagaaggttttt------cctcacatcgacagccccaca 210
|||||||||||||||| |||| |||| |||||| |||||||||||||||||||||
Sbjct: 620 gcatgcatctgccggtgttggcagaatgttttttttttccctcacatcgacagccccaca 561
Query: 211 catgccgcgcagcaacgagtaccccgctatcactccactggagcatagacgacacatgtt 270
|||||||| ||||||| |||||| ||||||| ||| |||||||||||||||| || |||
Sbjct: 560 catgccgcccagcaaccagtaccttgctatcattccgctggagcatagacgacgcaggtt 501
Query: 271 ctgcttggtgtataaaccgagaatgaatatggcctattatcatgcgaacagtc 323
||||||||||||||||| ||||| |||| ||||| |||||||| ||||||||
Sbjct: 500 ctgcttggtgtataaacagagaacgaatggggcctgttatcatgtgaacagtc 448
Score = 121 bits (61), Expect = 4e-025
Identities = 70/73 (95%)
Strand = Plus / Minus
Query: 328 gtgaagtgctcggctgcgtgatggatcctgctaaatccaccaaatagtccagcgtcggag 387
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 339 gtgaagtgctctgctgcgtgatggatcctgccaaatccaccaaatagtccagcgtccgag 280
Query: 388 tccaagaccacct 400
|||||||||||||
Sbjct: 279 tccaagaccacct 267
>gb|CW020954.1|CW020954 104_109_10409259_114_30491 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10409259, DNA
sequence
Length = 708
Score = 149 bits (75), Expect = 2e-033
Identities = 81/83 (97%)
Strand = Plus / Minus
Query: 1942 acctttacacgagatccatgaggaataggtgatgtaccatctgcattgttaggcagaaaa 2001
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 acctttacacgagttccatgaggaataggtgatgtaccatctgcattgttaggcagaaaa 499
Query: 2002 atttcccaaacaccaaactcatt 2024
|| ||||||||||||||||||||
Sbjct: 498 atctcccaaacaccaaactcatt 476
Score = 91.7 bits (46), Expect = 3e-016
Identities = 66/70 (94%), Gaps = 2/70 (2%)
Strand = Plus / Minus
Query: 1876 gcctgcactgagtacttgatccaggctggaattgaatcctttatccctgatggagtatcc 1935
||||| |||||||||| ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 704 gcctgtactgagtact-gatccaggcaggaat-gaatcctttatccctgatggagtatcc 647
Query: 1936 attctcacct 1945
||||||||||
Sbjct: 646 attctcacct 637
>gb|BG239893.1|BG239893 OV1_30_D01.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA
sequence
Length = 165
Score = 133 bits (67), Expect = 1e-028
Identities = 139/163 (85%)
Strand = Plus / Minus
Query: 272 tgcttggtgtataaaccgagaatgaatatggcctattatcatgcgaacagtcggcggtga 331
||||||| |||||||| | || |||| ||||| |||||||| ||||| |||| |||
Sbjct: 165 tgcttggagtataaacacacaacgaatggggcctgttatcatgtgaacactcggtactga 106
Query: 332 agtgctcggctgcgtgatggatcctgctaaatccaccaaatagtccagcgtcggagtcca 391
||||||| ||||| ||||||||||||| |||||||||||||| |||| |||| || ||||
Sbjct: 105 agtgctctgctgcctgatggatcctgccaaatccaccaaatactccaccgtccgactcca 46
Query: 392 agaccaccttatacaccccaggctttcgacaaccaatacggta 434
||||||||||||||| |||| | |||| |||||||||||||||
Sbjct: 45 agaccaccttatacatcccatgttttccacaaccaatacggta 3
>gb|CL195061.1|CL195061 104_420_10942098_114_32301_077 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10942098, DNA
sequence
Length = 649
Score = 131 bits (66), Expect = 4e-028
Identities = 81/86 (94%)
Strand = Plus / Minus
Query: 1825 acctcttcaggaggatcataataaatcccatcatatggtatttctcctggggcctgcact 1884
||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| |||
Sbjct: 86 acctcttcaggaggatcataataaagcccatcgtatggtatttctcctggagcctgtact 27
Query: 1885 gagtacttgatccaggctggaattga 1910
||||||||||||||||| ||||||||
Sbjct: 26 gagtacttgatccaggcaggaattga 1
Score = 125 bits (63), Expect = 2e-026
Identities = 81/87 (93%)
Strand = Plus / Minus
Query: 1742 ccgggctactcattccgacatgtgtttcatatatccgcaatgattttggtcgtttaggtt 1801
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 372 ccgggctactcattccaacatgtgtttcatatatcctcaatgattttggtcgtttaggtt 313
Query: 1802 gcgcatgcctgaacacatactttacct 1828
| |||| ||||||||||||||||||
Sbjct: 312 taggatgcttgaacacatactttacct 286
>gb|BZ335717.1|BZ335717 hz26d08.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz26d08 5', DNA sequence
Length = 423
Score = 125 bits (63), Expect = 2e-026
Identities = 81/87 (93%)
Strand = Plus / Minus
Query: 1742 ccgggctactcattccgacatgtgtttcatatatccgcaatgattttggtcgtttaggtt 1801
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 171 ccgggctactcattccaacatgtgtttcatatatcctcaatgattttggtcgtttaggtt 112
Query: 1802 gcgcatgcctgaacacatactttacct 1828
| |||| ||||||||||||||||||
Sbjct: 111 taggatgcttgaacacatactttacct 85
>gb|BZ335716.1|BZ335716 hz26d08.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hz26d08 5', DNA sequence
Length = 635
Score = 123 bits (62), Expect = 9e-026
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 1621 ccaaagcttccataatatgagtgctcttggattgccattatttgcactgcattgtatcca 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaaagcttccataatatgagtgctcttggattgccattatttgcactgcattgtatcca 620
Query: 1681 ag 1682
||
Sbjct: 621 ag 622
>gb|CW124939.1|CW124939 104_505_11112062_148_34710_063 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11112062, DNA
sequence
Length = 375
Score = 121 bits (61), Expect = 4e-025
Identities = 70/73 (95%)
Strand = Plus / Minus
Query: 328 gtgaagtgctcggctgcgtgatggatcctgctaaatccaccaaatagtccagcgtcggag 387
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 289 gtgaagtgctctgctgcgtgatggatcctgccaaatccaccaaatagtccagcgtccgag 230
Query: 388 tccaagaccacct 400
|||||||||||||
Sbjct: 229 tccaagaccacct 217
>gb|CW342803.1|CW342803 104_844_11487075_116_36173_002 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11487075, DNA
sequence
Length = 719
Score = 121 bits (61), Expect = 4e-025
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 328 gtgaagtgctcggctgcgtgatggatcctgctaaatccaccaaatagtccagcgtcggag 387
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 177 gtgaagtgctctgctgcgtgatggatcctgccaaatccaccaaatagtccagcgtccgag 236
Query: 388 tccaagaccacct 400
|||||||||||||
Sbjct: 237 tccaagaccacct 249
Score = 71.9 bits (36), Expect = 3e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 256 tagacgacacatgttctgcttggtgtataaaccgagaatgaatatggcctattatcatgc 315
|||||||| || |||||||||||||||||||| ||||| |||| ||||| ||||||||
Sbjct: 1 tagacgacgcaggttctgcttggtgtataaacagagaacgaatggggcctgttatcatgt 60
Query: 316 gaacagtc 323
||||||||
Sbjct: 61 gaacagtc 68
>gb|CW437259.1|CW437259 fsbb001f154e17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f154e17, DNA
sequence
Length = 719
Score = 117 bits (59), Expect = 6e-024
Identities = 116/135 (85%)
Strand = Plus / Minus
Query: 420 acaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaataccaa 479
|||||||| ||| |||||||||||||| ||| | |||||||||||||| ||||| |||||
Sbjct: 650 acaaccaacacgatagtcaaaatagctattgctccagtggaagttgaatacaaagaccaa 591
Query: 480 atctcccttttcgaacacaatcaccttatcctcctcatgtttccgggaaatatactggtg 539
|||||| | ||||| | |||||||||||||||||||||||||| || | ||| |||
Sbjct: 590 atctcctctctcgaagatgatcaccttatcctcctcatgtttccgtgatacatatgagtg 531
Query: 540 atcagatgtcatgaa 554
|||||||||||||||
Sbjct: 530 atcagatgtcatgaa 516
Score = 77.8 bits (39), Expect = 5e-012
Identities = 66/75 (88%)
Strand = Plus / Minus
Query: 555 ttcatatttttgctcaagatgttgcattgcctgatcaaactcttgcataccatgatacct 614
|||||||||| |||||| || |||||||||||||||||||||||||| ||| |||| ||
Sbjct: 255 ttcatattttccctcaaggtgctgcattgcctgatcaaactcttgcatgccacgatatct 196
Query: 615 aagatagtctgcatc 629
||||| ||||||||
Sbjct: 195 cagataatctgcatc 181
>gb|CW477931.1|CW477931 fsbb001f235i08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235i08, DNA
sequence
Length = 707
Score = 117 bits (59), Expect = 6e-024
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 1256 ttacttgtaatccgtggtgagtgtacatcatggaggtcacaccatcaaaacggaaaccat 1315
||||||||||||| |||||||| ||||||||||||||||| |||||||| || || ||||
Sbjct: 368 ttacttgtaatccatggtgagtatacatcatggaggtcaccccatcaaatcgaaatccat 427
Query: 1316 caaacttatattcctcgagccaccatctagcattggagagaagaaatcttaaaac 1370
||||||||||||| || ||||||||||| ||||| || || ||| |||| |||||
Sbjct: 428 caaacttatattcttcaagccaccatcttgcatttgacagtagatatctcaaaac 482
Score = 111 bits (56), Expect = 3e-022
Identities = 92/104 (88%)
Strand = Plus / Plus
Query: 1369 acttcccagttcccatagttaaataggcgagaatcccacatccagtgatggccacgtgga 1428
|||||||| ||||||| || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 559 acttcccaactcccataattgaataggcgagaatcccacatccaatgatggccccgtgga 618
Query: 1429 ccactgtgaaagtaatgtgtatctgtaccatcaaaaccattcaa 1472
|||| || |||||||||||||| || ||||| |||||||||||
Sbjct: 619 ccaccatggaagtaatgtgtatcagtgccatcgaaaccattcaa 662
Score = 111 bits (56), Expect = 3e-022
Identities = 98/112 (87%)
Strand = Plus / Plus
Query: 1124 cactaacatcttcaccaatggttacagcctcaggataaagtccatgaattagatcattta 1183
|||| |||||||||||||||| |||||| || |||||||| |||||||| ||||| ||||
Sbjct: 31 cactcacatcttcaccaatggatacagcttctggataaagcccatgaataagatcgttta 90
Query: 1184 ccagcatcaagtaaaccactgcatctacatcggtggcaaagccaaaatactc 1235
||||||| | |||||| |||||||| ||||| || ||||| |||||||||||
Sbjct: 91 ccagcattaggtaaactactgcatcaacatcagtagcaaatccaaaatactc 142
>gb|CW477932.1|CW477932 fsbb001f235i08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f235i08, DNA
sequence
Length = 702
Score = 109 bits (55), Expect = 1e-021
Identities = 106/123 (86%)
Strand = Plus / Minus
Query: 1380 cccatagttaaataggcgagaatcccacatccagtgatggccacgtggaccactgtgaaa 1439
|||||| || ||||||||||||||||||||||| |||||||| |||||||||| || ||
Sbjct: 700 cccataattgaataggcgagaatcccacatccaatgatggccccgtggaccaccatggaa 641
Query: 1440 gtaatgtgtatctgtaccatcaaaaccattcaacccatccagagtattacttgacgcatg 1499
|||||||||||| || ||||| ||||||||||| || |||| |||||| |||| | |||
Sbjct: 640 gtaatgtgtatcagtgccatcgaaaccattcaaaccgtccaaggtattatttgatgaatg 581
Query: 1500 act 1502
|||
Sbjct: 580 act 578
>gb|CF770718.1|CF770718 DSBF1_9_H03.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_H03_A010 5', mRNA sequence
Length = 531
Score = 77.8 bits (39), Expect = 5e-012
Identities = 174/219 (79%)
Strand = Plus / Minus
Query: 267 tgttctgcttggtgtataaaccgagaatgaatatggcctattatcatgcgaacagtcggc 326
||||||||| |||| ||| |||||||| ||| | ||||| || ||||||| ||||| ||
Sbjct: 232 tgttctgctgggtgcatagaccgagaaagaacacggcctgttgtcatgcggccagtcagc 173
Query: 327 ggtgaagtgctcggctgcgtgatggatcctgctaaatccaccaaatagtccagcgtcgga 386
||||||| ||| || | |||| | || ||||||||||| || || ||| |||| ||
Sbjct: 172 agtgaagtactcagcatcatgatcaagccgactaaatccaccgaaaaggccatcgtcaga 113
Query: 387 gtccaagaccaccttatacaccccaggctttcgacaaccaatacggtagtcaaaatagct 446
|| || || | ||| ||| ||||||||| |||||||| ||| ||||||||||||||
Sbjct: 112 atctaacacgatcttgtacttcccaggcttgaaacaaccaacacgatagtcaaaatagct 53
Query: 447 gttgttgcagtggaagttgaacacaaataccaaatctcc 485
||| | |||||||||||||| ||||| |||||||||||
Sbjct: 52 attgctccagtggaagttgaatacaaagaccaaatctcc 14
>gb|CL160894.1|CL160894 104_351_10805315_116_31825_371 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805315, DNA
sequence
Length = 729
Score = 75.8 bits (38), Expect = 2e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 1621 ccaaagcttccataatatgagtgctcttggattgccattatttgcactgcattgtatcca 1680
||||||||| ||||||| ||||| || |||||||||||||| || |||||||||||||||
Sbjct: 179 ccaaagcttgcataataagagtgttcctggattgccattatctgtactgcattgtatcca 120
Query: 1681 ag 1682
||
Sbjct: 119 ag 118
Score = 60.0 bits (30), Expect = 1e-006
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 1501 ctatgaaccacatccatgagaactagcaaaccaagctcatgtgctctatcaatcaaagac 1560
|||||||| | ||||||||| |||||||| ||||||||||| ||| | ||||||| |||
Sbjct: 490 ctatgaacaatatccatgagcactagcaagccaagctcatgcgctttgtcaatcagagat 431
Query: 1561 ttcaattcttctggggtaccaaaacgactacttggcgc 1598
|| | || || || || |||||||| |||||||||||
Sbjct: 430 tttaggtcctcaggagtcccaaaacggctacttggcgc 393
>gb|CF770707.1|CF770707 DSBF1_9_G04.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_9_G04_A010 5', mRNA sequence
Length = 195
Score = 75.8 bits (38), Expect = 2e-011
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 420 acaaccaatacggtagtcaaaatagctgttgttgcagtggaagttgaacacaaataccaa 479
|||||||| ||| |||||||||||||| ||| | |||||||||||||| ||||| |||||
Sbjct: 79 acaaccaacacgatagtcaaaatagctattgctccagtggaagttgaatacaaagaccaa 20
Query: 480 atctcc 485
||||||
Sbjct: 19 atctcc 14
>gb|CL160893.1|CL160893 104_351_10805315_114_31824_371 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10805315, DNA
sequence
Length = 750
Score = 60.0 bits (30), Expect = 1e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 1501 ctatgaaccacatccatgagaactagcaaaccaagctcatgtgctctatcaatcaaagac 1560
|||||||| | ||||||||| |||||||| ||||||||||| ||| | ||||||| |||
Sbjct: 629 ctatgaacaatatccatgagcactagcaagccaagctcatgcgctttgtcaatcagagat 688
Query: 1561 ttcaattcttctggggtaccaaaacgactacttggcgc 1598
|| | || || || || |||||||| |||||||||||
Sbjct: 689 tttaggtcctcaggagtcccaaaacggctacttggcgc 726
>gb|CD228917.1|CD228917 CCC1_10_C07.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_10_C07_A007 5', mRNA sequence
Length = 651
Score = 48.1 bits (24), Expect = 0.004
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| || || ||||||||||| ||||| |||||
Sbjct: 481 ctcttggaaagtcaatccattctgggtgaccaaactcattccccataaaatt 430
>gb|AF169833.2| Sorghum bicolor seed starch branching enzyme mRNA, complete cds
Length = 2805
Score = 48.1 bits (24), Expect = 0.004
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 713 ctcttggaaaatctatccattcaggatgtccaaactcatttcccatgaaatt 764
|||||||||| || |||||||| || || ||||||||||| ||||| |||||
Sbjct: 1847 ctcttggaaagtcaatccattctgggtgaccaaactcattccccataaaatt 1796
>gb|CW260481.1|CW260481 104_727_11228988_148_35200_044 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11228988, DNA
sequence
Length = 570
Score = 42.1 bits (21), Expect = 0.27
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 140 cttattgtagcatgcatgcat 160
|||||||||||||||||||||
Sbjct: 256 cttattgtagcatgcatgcat 236
>gb|CW488961.1|CW488961 fsbb001f265j24k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f265j24, DNA
sequence
Length = 476
Score = 42.1 bits (21), Expect = 0.27
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 2703 gagcgaaatccgggtctgctctggg 2727
|||| ||||||||||||||||||||
Sbjct: 474 gagcaaaatccgggtctgctctggg 450
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 717,030
Number of Sequences: 832831
Number of extensions: 717030
Number of successful extensions: 207514
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 207381
Number of HSP's gapped (non-prelim): 106
length of query: 2729
length of database: 491,359,669
effective HSP length: 21
effective length of query: 2708
effective length of database: 473,870,218
effective search space: 1283240550344
effective search space used: 1283240550344
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)